Multiple sequence alignment - TraesCS1B01G091700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G091700 chr1B 100.000 7454 0 0 1 7454 93289527 93296980 0.000000e+00 13766.0
1 TraesCS1B01G091700 chr1B 86.501 726 69 11 986 1706 92883119 92882418 0.000000e+00 771.0
2 TraesCS1B01G091700 chr1B 81.197 585 88 17 5613 6180 92876631 92876052 1.140000e-122 451.0
3 TraesCS1B01G091700 chr1B 87.313 268 28 4 6177 6440 92876026 92875761 1.220000e-77 302.0
4 TraesCS1B01G091700 chr1B 81.410 312 53 5 2892 3201 92880116 92879808 4.470000e-62 250.0
5 TraesCS1B01G091700 chr1B 81.272 283 43 5 5290 5564 92877019 92876739 3.500000e-53 220.0
6 TraesCS1B01G091700 chr1B 82.305 243 37 6 6878 7118 608049891 608050129 9.800000e-49 206.0
7 TraesCS1B01G091700 chr1B 95.833 48 2 0 4654 4701 92878025 92877978 2.230000e-10 78.7
8 TraesCS1B01G091700 chr1D 94.291 2645 78 20 749 3370 57954489 57957083 0.000000e+00 3980.0
9 TraesCS1B01G091700 chr1D 91.854 2001 100 22 4909 6877 57959199 57961168 0.000000e+00 2734.0
10 TraesCS1B01G091700 chr1D 85.519 877 70 22 986 1850 57506708 57505877 0.000000e+00 863.0
11 TraesCS1B01G091700 chr1D 87.698 756 50 23 2 737 57953775 57954507 0.000000e+00 841.0
12 TraesCS1B01G091700 chr1D 86.425 442 49 3 4262 4702 57958631 57959062 2.430000e-129 473.0
13 TraesCS1B01G091700 chr1D 88.252 349 40 1 5833 6180 57500620 57500272 4.160000e-112 416.0
14 TraesCS1B01G091700 chr1D 89.199 287 27 3 3531 3817 57957923 57958205 9.200000e-94 355.0
15 TraesCS1B01G091700 chr1D 83.500 400 43 14 3881 4267 57958202 57958591 1.190000e-92 351.0
16 TraesCS1B01G091700 chr1D 81.524 433 42 27 1964 2391 57505812 57505413 9.330000e-84 322.0
17 TraesCS1B01G091700 chr1D 87.687 268 27 3 6177 6440 57500246 57499981 2.610000e-79 307.0
18 TraesCS1B01G091700 chr1D 87.179 156 17 3 4704 4858 314705758 314705605 2.760000e-39 174.0
19 TraesCS1B01G091700 chr1D 81.333 150 21 4 2485 2634 57504166 57504024 1.700000e-21 115.0
20 TraesCS1B01G091700 chr1D 90.278 72 5 2 4631 4701 57502273 57502203 7.960000e-15 93.5
21 TraesCS1B01G091700 chr1A 93.265 2539 134 21 2706 5226 56919984 56922503 0.000000e+00 3707.0
22 TraesCS1B01G091700 chr1A 94.053 1917 39 19 749 2615 56918096 56919987 0.000000e+00 2839.0
23 TraesCS1B01G091700 chr1A 93.293 1670 80 18 5233 6877 56922624 56924286 0.000000e+00 2435.0
24 TraesCS1B01G091700 chr1A 89.229 752 40 23 7 742 56917393 56918119 0.000000e+00 902.0
25 TraesCS1B01G091700 chr1A 85.017 881 78 24 986 1850 56627889 56627047 0.000000e+00 846.0
26 TraesCS1B01G091700 chr1A 80.432 879 118 29 5613 6440 56621732 56620857 8.210000e-174 621.0
27 TraesCS1B01G091700 chr1A 82.192 438 40 27 1964 2391 56626982 56626573 7.160000e-90 342.0
28 TraesCS1B01G091700 chr1A 89.103 156 14 3 4704 4858 395177601 395177448 2.750000e-44 191.0
29 TraesCS1B01G091700 chr1A 82.000 150 20 4 2485 2634 56625299 56625157 3.650000e-23 121.0
30 TraesCS1B01G091700 chr1A 79.394 165 17 14 7119 7267 56924286 56924449 4.760000e-17 100.0
31 TraesCS1B01G091700 chr4B 93.151 219 11 3 4857 5073 88708283 88708067 1.210000e-82 318.0
32 TraesCS1B01G091700 chr4B 85.870 184 20 5 5716 5898 20175293 20175471 2.750000e-44 191.0
33 TraesCS1B01G091700 chr4B 88.679 106 12 0 6266 6371 48101435 48101330 6.070000e-26 130.0
34 TraesCS1B01G091700 chr3B 92.593 216 10 3 4857 5070 442043922 442044133 9.400000e-79 305.0
35 TraesCS1B01G091700 chr6B 91.781 219 14 3 4857 5073 527630026 527629810 1.220000e-77 302.0
36 TraesCS1B01G091700 chr3A 92.130 216 12 4 4857 5070 354907434 354907646 4.370000e-77 300.0
37 TraesCS1B01G091700 chr3A 85.714 189 18 7 5716 5898 354907245 354907430 2.750000e-44 191.0
38 TraesCS1B01G091700 chr5D 85.537 242 29 6 6879 7118 24883158 24882921 1.610000e-61 248.0
39 TraesCS1B01G091700 chr5D 87.591 137 15 2 4723 4859 252615781 252615915 2.780000e-34 158.0
40 TraesCS1B01G091700 chr5D 85.714 63 4 4 3820 3878 558339383 558339444 2.250000e-05 62.1
41 TraesCS1B01G091700 chr2B 83.265 245 34 7 6879 7120 164706286 164706526 1.260000e-52 219.0
42 TraesCS1B01G091700 chr2B 82.716 243 37 5 6878 7118 398691379 398691140 2.110000e-50 211.0
43 TraesCS1B01G091700 chr2B 100.000 29 0 0 3849 3877 97953268 97953240 4.000000e-03 54.7
44 TraesCS1B01G091700 chr2D 82.927 246 32 10 6875 7116 291886206 291885967 5.860000e-51 213.0
45 TraesCS1B01G091700 chr2D 86.047 172 16 6 5728 5898 105779686 105779522 2.140000e-40 178.0
46 TraesCS1B01G091700 chr2D 86.364 154 20 1 4704 4857 512769192 512769344 4.630000e-37 167.0
47 TraesCS1B01G091700 chr2D 82.979 141 20 3 4704 4843 28412775 28412912 2.820000e-24 124.0
48 TraesCS1B01G091700 chr7D 82.449 245 31 11 6875 7116 434300512 434300747 3.530000e-48 204.0
49 TraesCS1B01G091700 chr7D 81.967 244 39 5 6878 7119 42814832 42814592 1.270000e-47 202.0
50 TraesCS1B01G091700 chr7D 82.911 158 22 5 4704 4858 249428212 249428367 3.630000e-28 137.0
51 TraesCS1B01G091700 chrUn 82.305 243 34 9 6877 7116 305881509 305881745 1.270000e-47 202.0
52 TraesCS1B01G091700 chr4A 81.967 244 39 5 6878 7119 650372652 650372412 1.270000e-47 202.0
53 TraesCS1B01G091700 chr4A 85.271 129 17 2 6254 6381 569484203 569484330 1.690000e-26 132.0
54 TraesCS1B01G091700 chr4A 96.875 32 1 0 3846 3877 724089066 724089035 4.000000e-03 54.7
55 TraesCS1B01G091700 chr3D 86.957 184 18 5 5716 5898 327310967 327311145 1.270000e-47 202.0
56 TraesCS1B01G091700 chr5A 88.462 156 17 1 4704 4859 335291437 335291591 3.550000e-43 187.0
57 TraesCS1B01G091700 chr7B 84.783 184 22 5 5716 5898 699508618 699508796 5.940000e-41 180.0
58 TraesCS1B01G091700 chr5B 85.806 155 20 1 4704 4858 285037831 285037983 5.980000e-36 163.0
59 TraesCS1B01G091700 chr5B 84.800 125 8 9 6248 6365 586279800 586279920 1.700000e-21 115.0
60 TraesCS1B01G091700 chr4D 88.679 106 10 2 6286 6391 32940037 32939934 2.180000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G091700 chr1B 93289527 93296980 7453 False 13766.000000 13766 100.000000 1 7454 1 chr1B.!!$F1 7453
1 TraesCS1B01G091700 chr1B 92875761 92883119 7358 True 345.450000 771 85.587667 986 6440 6 chr1B.!!$R1 5454
2 TraesCS1B01G091700 chr1D 57953775 57961168 7393 False 1455.666667 3980 88.827833 2 6877 6 chr1D.!!$F1 6875
3 TraesCS1B01G091700 chr1D 57499981 57506708 6727 True 352.750000 863 85.765500 986 6440 6 chr1D.!!$R2 5454
4 TraesCS1B01G091700 chr1A 56917393 56924449 7056 False 1996.600000 3707 89.846800 7 7267 5 chr1A.!!$F1 7260
5 TraesCS1B01G091700 chr1A 56620857 56627889 7032 True 482.500000 846 82.410250 986 6440 4 chr1A.!!$R2 5454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 278 0.318120 CAAGGACACCCATGCAAACC 59.682 55.000 0.00 0.0 33.88 3.27 F
300 316 0.828343 GCCCTATGAGCCTACGTCCT 60.828 60.000 0.00 0.0 0.00 3.85 F
773 804 0.829990 CCTCCTCTCCTTCTTCCTGC 59.170 60.000 0.00 0.0 0.00 4.85 F
2300 2457 0.991146 TGTGGCTAGCTCATTTCCCA 59.009 50.000 15.72 0.0 0.00 4.37 F
2474 2830 3.049206 TGCGTGTTACACTTACGGTTAC 58.951 45.455 13.86 0.0 38.20 2.50 F
3624 6536 3.125829 CGCTCTAGTTAGGTCACACGTAA 59.874 47.826 0.00 0.0 0.00 3.18 F
4504 7533 1.004044 CTCCTCATGTGGCAAACCTCT 59.996 52.381 9.02 0.0 36.63 3.69 F
5510 10075 0.535780 TGGCACCAGCAGTTCTTCAG 60.536 55.000 0.00 0.0 44.61 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1234 1286 0.453390 GAGGGCTACAGCATGCAAAC 59.547 55.000 21.98 4.03 42.53 2.93 R
2274 2431 1.238439 TGAGCTAGCCACAGCAAAAC 58.762 50.000 12.13 0.00 44.35 2.43 R
2711 4109 3.646946 AGTGTATGTCTATGCATGCTCG 58.353 45.455 20.33 7.17 33.55 5.03 R
3841 6764 1.307097 GATGATGCAGAGGTCAAGGC 58.693 55.000 0.00 0.00 0.00 4.35 R
3847 6770 2.235845 CATCACGATGATGCAGAGGT 57.764 50.000 12.77 0.00 46.37 3.85 R
5413 9971 1.197721 CCGTGACTGGAGTTTTCATGC 59.802 52.381 0.00 0.00 0.00 4.06 R
6294 11033 0.036388 TGTTGATCTGCTTCGGGTCC 60.036 55.000 0.00 0.00 0.00 4.46 R
7267 12044 0.033504 GTCACCAACCTCTGCTTCGA 59.966 55.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 8.712228 ATATTAAAATCCCTCATTCACCTTCC 57.288 34.615 0.00 0.00 0.00 3.46
54 56 4.682021 AAAATCCCTCATTCACCTTCCT 57.318 40.909 0.00 0.00 0.00 3.36
72 74 8.744652 CACCTTCCTTCTAGTCGATATATTGAT 58.255 37.037 5.94 0.00 0.00 2.57
73 75 8.962679 ACCTTCCTTCTAGTCGATATATTGATC 58.037 37.037 5.94 1.17 0.00 2.92
74 76 8.410141 CCTTCCTTCTAGTCGATATATTGATCC 58.590 40.741 5.94 0.00 0.00 3.36
98 100 7.728532 TCCTACAATAGTAAGTATGCTCCATGA 59.271 37.037 0.00 0.00 0.00 3.07
110 112 3.165071 TGCTCCATGAAGTAGAGACACA 58.835 45.455 0.00 0.00 0.00 3.72
118 120 6.205464 CCATGAAGTAGAGACACAACAATTGT 59.795 38.462 4.92 4.92 46.75 2.71
126 142 9.382244 GTAGAGACACAACAATTGTACAATTTC 57.618 33.333 27.33 20.90 43.23 2.17
162 178 6.152831 GTGGGAGAAGTTATACTTGCCAAAAT 59.847 38.462 0.00 0.00 38.80 1.82
178 194 9.132521 CTTGCCAAAATGAAAATAAGACTACTG 57.867 33.333 0.00 0.00 0.00 2.74
206 222 7.569240 AGGTCAAAATTGGGAAATTACACAAA 58.431 30.769 0.00 0.00 36.74 2.83
209 225 9.271828 GTCAAAATTGGGAAATTACACAAATCT 57.728 29.630 0.00 0.00 36.74 2.40
250 266 0.843309 TTCAGCCTCCAACAAGGACA 59.157 50.000 0.00 0.00 43.07 4.02
262 278 0.318120 CAAGGACACCCATGCAAACC 59.682 55.000 0.00 0.00 33.88 3.27
295 311 1.618837 TCGATTGCCCTATGAGCCTAC 59.381 52.381 0.00 0.00 0.00 3.18
297 313 1.344763 GATTGCCCTATGAGCCTACGT 59.655 52.381 0.00 0.00 0.00 3.57
300 316 0.828343 GCCCTATGAGCCTACGTCCT 60.828 60.000 0.00 0.00 0.00 3.85
301 317 1.547223 GCCCTATGAGCCTACGTCCTA 60.547 57.143 0.00 0.00 0.00 2.94
302 318 2.161030 CCCTATGAGCCTACGTCCTAC 58.839 57.143 0.00 0.00 0.00 3.18
330 361 5.524646 CCTCTCTCTCATCATCAAGAAAAGC 59.475 44.000 0.00 0.00 0.00 3.51
331 362 5.426504 TCTCTCTCATCATCAAGAAAAGCC 58.573 41.667 0.00 0.00 0.00 4.35
332 363 5.189342 TCTCTCTCATCATCAAGAAAAGCCT 59.811 40.000 0.00 0.00 0.00 4.58
333 364 6.382282 TCTCTCTCATCATCAAGAAAAGCCTA 59.618 38.462 0.00 0.00 0.00 3.93
334 365 7.070946 TCTCTCTCATCATCAAGAAAAGCCTAT 59.929 37.037 0.00 0.00 0.00 2.57
335 366 7.571919 TCTCTCATCATCAAGAAAAGCCTATT 58.428 34.615 0.00 0.00 0.00 1.73
336 367 8.708378 TCTCTCATCATCAAGAAAAGCCTATTA 58.292 33.333 0.00 0.00 0.00 0.98
337 368 8.899427 TCTCATCATCAAGAAAAGCCTATTAG 57.101 34.615 0.00 0.00 0.00 1.73
338 369 8.708378 TCTCATCATCAAGAAAAGCCTATTAGA 58.292 33.333 0.00 0.00 0.00 2.10
339 370 9.334947 CTCATCATCAAGAAAAGCCTATTAGAA 57.665 33.333 0.00 0.00 0.00 2.10
340 371 9.685276 TCATCATCAAGAAAAGCCTATTAGAAA 57.315 29.630 0.00 0.00 0.00 2.52
552 583 3.154473 TCCATCCTCCCGAAGCCG 61.154 66.667 0.00 0.00 0.00 5.52
611 642 1.252215 TACCGCCGAGATCACAACCA 61.252 55.000 0.00 0.00 0.00 3.67
734 765 4.016666 TCTTCATCTTCTTCCTCCTCTCCT 60.017 45.833 0.00 0.00 0.00 3.69
735 766 4.344938 TCATCTTCTTCCTCCTCTCCTT 57.655 45.455 0.00 0.00 0.00 3.36
736 767 4.285863 TCATCTTCTTCCTCCTCTCCTTC 58.714 47.826 0.00 0.00 0.00 3.46
737 768 4.016666 TCATCTTCTTCCTCCTCTCCTTCT 60.017 45.833 0.00 0.00 0.00 2.85
738 769 4.412060 TCTTCTTCCTCCTCTCCTTCTT 57.588 45.455 0.00 0.00 0.00 2.52
739 770 4.349365 TCTTCTTCCTCCTCTCCTTCTTC 58.651 47.826 0.00 0.00 0.00 2.87
740 771 3.108847 TCTTCCTCCTCTCCTTCTTCC 57.891 52.381 0.00 0.00 0.00 3.46
741 772 2.657459 TCTTCCTCCTCTCCTTCTTCCT 59.343 50.000 0.00 0.00 0.00 3.36
742 773 2.838637 TCCTCCTCTCCTTCTTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
743 774 1.289530 TCCTCCTCTCCTTCTTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
744 775 1.290732 CCTCCTCTCCTTCTTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
745 776 2.666317 CTCCTCTCCTTCTTCCTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
746 777 2.244769 CTCCTCTCCTTCTTCCTCCTCT 59.755 54.545 0.00 0.00 0.00 3.69
747 778 2.243736 TCCTCTCCTTCTTCCTCCTCTC 59.756 54.545 0.00 0.00 0.00 3.20
748 779 2.666317 CTCTCCTTCTTCCTCCTCTCC 58.334 57.143 0.00 0.00 0.00 3.71
749 780 2.244769 CTCTCCTTCTTCCTCCTCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
750 781 2.657459 TCTCCTTCTTCCTCCTCTCCTT 59.343 50.000 0.00 0.00 0.00 3.36
751 782 3.031013 CTCCTTCTTCCTCCTCTCCTTC 58.969 54.545 0.00 0.00 0.00 3.46
752 783 2.657459 TCCTTCTTCCTCCTCTCCTTCT 59.343 50.000 0.00 0.00 0.00 2.85
753 784 3.078305 TCCTTCTTCCTCCTCTCCTTCTT 59.922 47.826 0.00 0.00 0.00 2.52
754 785 3.450817 CCTTCTTCCTCCTCTCCTTCTTC 59.549 52.174 0.00 0.00 0.00 2.87
755 786 3.108847 TCTTCCTCCTCTCCTTCTTCC 57.891 52.381 0.00 0.00 0.00 3.46
756 787 2.657459 TCTTCCTCCTCTCCTTCTTCCT 59.343 50.000 0.00 0.00 0.00 3.36
757 788 2.838637 TCCTCCTCTCCTTCTTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
758 789 1.289530 TCCTCCTCTCCTTCTTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
759 790 1.290732 CCTCCTCTCCTTCTTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
760 791 2.666317 CTCCTCTCCTTCTTCCTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
761 792 2.244769 CTCCTCTCCTTCTTCCTCCTCT 59.755 54.545 0.00 0.00 0.00 3.69
762 793 2.243736 TCCTCTCCTTCTTCCTCCTCTC 59.756 54.545 0.00 0.00 0.00 3.20
763 794 2.666317 CTCTCCTTCTTCCTCCTCTCC 58.334 57.143 0.00 0.00 0.00 3.71
773 804 0.829990 CCTCCTCTCCTTCTTCCTGC 59.170 60.000 0.00 0.00 0.00 4.85
800 831 1.219664 CCGTACCCCAAGAATCGCA 59.780 57.895 0.00 0.00 0.00 5.10
864 916 6.986762 GCTGCTGCTAGTGGTAGTAACCAG 62.987 54.167 8.53 0.00 45.64 4.00
940 992 3.494336 GGTAGCTGCGCTGTGCTG 61.494 66.667 25.05 14.80 46.63 4.41
941 993 3.494336 GTAGCTGCGCTGTGCTGG 61.494 66.667 25.05 11.20 46.63 4.85
942 994 4.765449 TAGCTGCGCTGTGCTGGG 62.765 66.667 25.05 9.02 46.63 4.45
1463 1524 3.487042 CGACGAGTTCATGGTAGGTACAG 60.487 52.174 0.00 0.00 0.00 2.74
2274 2431 2.290896 TGTGGGGGCAAGTGAAGATTAG 60.291 50.000 0.00 0.00 0.00 1.73
2300 2457 0.991146 TGTGGCTAGCTCATTTCCCA 59.009 50.000 15.72 0.00 0.00 4.37
2353 2516 8.680903 AGATATGATGTCTTGGTTGAATTTGTC 58.319 33.333 0.00 0.00 0.00 3.18
2423 2778 6.693113 GGCATTTTTCTAACGAAATCTCATCC 59.307 38.462 0.00 0.00 38.81 3.51
2474 2830 3.049206 TGCGTGTTACACTTACGGTTAC 58.951 45.455 13.86 0.00 38.20 2.50
2483 3881 7.754924 TGTTACACTTACGGTTACTACATAAGC 59.245 37.037 0.00 0.00 37.82 3.09
2642 4040 6.992123 ACATCTGCAAATCCATCGAAATAGTA 59.008 34.615 0.00 0.00 0.00 1.82
2643 4041 7.172190 ACATCTGCAAATCCATCGAAATAGTAG 59.828 37.037 0.00 0.00 0.00 2.57
2644 4042 5.466728 TCTGCAAATCCATCGAAATAGTAGC 59.533 40.000 0.00 0.00 0.00 3.58
2646 4044 5.764686 TGCAAATCCATCGAAATAGTAGCAT 59.235 36.000 0.00 0.00 0.00 3.79
2647 4045 6.073058 TGCAAATCCATCGAAATAGTAGCATC 60.073 38.462 0.00 0.00 0.00 3.91
2648 4046 6.073058 GCAAATCCATCGAAATAGTAGCATCA 60.073 38.462 0.00 0.00 0.00 3.07
2652 4050 8.627208 ATCCATCGAAATAGTAGCATCATTTT 57.373 30.769 0.00 0.00 0.00 1.82
2701 4099 9.339492 CATGTTTTTGCAAAACAATTTGTAAGT 57.661 25.926 23.79 5.23 46.83 2.24
2732 4130 3.319122 TCGAGCATGCATAGACATACACT 59.681 43.478 21.98 0.00 0.00 3.55
2789 4187 3.414700 GTTCGCGGTGGTGCTGAG 61.415 66.667 6.13 0.00 0.00 3.35
2810 4208 4.019174 AGAAATTAGGCCCACTTGACATG 58.981 43.478 0.00 0.00 0.00 3.21
2867 4313 3.494048 CCTGCAAATAACCAAGGTGCAAA 60.494 43.478 0.00 0.00 44.05 3.68
2961 4444 7.592938 TGTCTTGTAATATTGGCAAGAACAAG 58.407 34.615 23.63 23.63 46.55 3.16
2963 4446 8.579850 TCTTGTAATATTGGCAAGAACAAGAT 57.420 30.769 26.26 4.85 43.67 2.40
2984 4467 4.864704 TGGGTTTTCAGGAATTACTTGC 57.135 40.909 0.00 0.00 0.00 4.01
2985 4468 3.254657 TGGGTTTTCAGGAATTACTTGCG 59.745 43.478 0.00 0.00 0.00 4.85
3003 4486 5.065218 ACTTGCGTTTCTATCATGAACATCC 59.935 40.000 0.00 0.00 0.00 3.51
3132 4616 4.846168 TGGTGTTGCATATACCACCTAA 57.154 40.909 11.80 0.00 46.02 2.69
3249 5241 3.865745 CGGTACTACAAAGGAGCATGAAG 59.134 47.826 0.00 0.00 33.29 3.02
3278 5271 8.038944 TGATCTTTACGTGCCTAGTTAATTTCT 58.961 33.333 0.00 0.00 0.00 2.52
3344 5341 6.703319 TGAGATAATTTTACCGGAACAGTGA 58.297 36.000 9.46 0.00 0.00 3.41
3345 5342 7.162761 TGAGATAATTTTACCGGAACAGTGAA 58.837 34.615 9.46 0.00 0.00 3.18
3370 5367 3.980646 TGGTCTGTGTGCATGTTAAAC 57.019 42.857 0.00 0.00 0.00 2.01
3534 6218 8.780616 ACTATCCATCATAGCTATGCTAAGAT 57.219 34.615 26.05 23.23 46.10 2.40
3604 6293 6.806739 AGAAATGCTAAGTATTTGGTTTTCGC 59.193 34.615 0.00 0.00 31.18 4.70
3624 6536 3.125829 CGCTCTAGTTAGGTCACACGTAA 59.874 47.826 0.00 0.00 0.00 3.18
3679 6591 5.241506 CGATAGGTCAAACCATTATGGCAAT 59.758 40.000 11.72 0.00 42.67 3.56
3684 6596 4.937015 GTCAAACCATTATGGCAATTGCTT 59.063 37.500 28.42 18.69 42.67 3.91
3706 6618 8.704668 TGCTTACATGATAGTCCTTAAGAATCA 58.295 33.333 3.36 7.93 0.00 2.57
3817 6734 3.144506 CTGCACAAGTGAGGTTCAGATT 58.855 45.455 4.04 0.00 0.00 2.40
3818 6735 3.554934 TGCACAAGTGAGGTTCAGATTT 58.445 40.909 4.04 0.00 0.00 2.17
3820 6737 4.402155 TGCACAAGTGAGGTTCAGATTTTT 59.598 37.500 4.04 0.00 0.00 1.94
3847 6770 4.396357 TTTCAAAAGGGGATAGCCTTGA 57.604 40.909 0.00 0.00 0.00 3.02
3851 6774 1.512735 AAGGGGATAGCCTTGACCTC 58.487 55.000 0.00 0.00 0.00 3.85
3947 6871 6.594937 AGCAATTGTTTATGCCTAATTTGTGG 59.405 34.615 7.40 0.00 43.57 4.17
3977 6902 8.925700 TCACATAAGATTCGAATTATGATTCCG 58.074 33.333 26.73 14.81 40.34 4.30
3998 6923 6.522054 TCCGGTCTCCATATATTTTGACTTC 58.478 40.000 0.00 0.00 0.00 3.01
4072 7044 6.458232 TTCTGATTTTCTTTGACGGGAAAA 57.542 33.333 0.00 0.00 42.83 2.29
4101 7073 6.058183 CCTCTCTACCCATTTCATTAAGGTG 58.942 44.000 0.00 0.00 31.89 4.00
4183 7167 9.303537 GAGATAAAAGACGTAAGCTACATTTCT 57.696 33.333 0.00 0.00 45.62 2.52
4224 7208 6.695713 CGACTATGGTTAATTGTTCTCATCGA 59.304 38.462 0.00 0.00 0.00 3.59
4289 7318 1.080093 CACTTCGGTCAAGCGGCTA 60.080 57.895 1.35 0.00 35.17 3.93
4294 7323 1.141881 CGGTCAAGCGGCTACAGAT 59.858 57.895 1.35 0.00 0.00 2.90
4350 7379 4.006319 CCAATCCTCCAAAGAGAAGTCAC 58.994 47.826 0.00 0.00 43.39 3.67
4504 7533 1.004044 CTCCTCATGTGGCAAACCTCT 59.996 52.381 9.02 0.00 36.63 3.69
4508 7537 3.370846 CCTCATGTGGCAAACCTCTGATA 60.371 47.826 0.00 0.00 36.63 2.15
4515 7544 3.459227 TGGCAAACCTCTGATATCATGGA 59.541 43.478 23.58 11.67 36.63 3.41
4709 8390 5.254115 ACTCAATTGCTAAAAGGTACTCCC 58.746 41.667 0.00 0.00 38.49 4.30
4711 8392 6.214819 ACTCAATTGCTAAAAGGTACTCCCTA 59.785 38.462 0.00 0.00 45.47 3.53
4713 8394 4.460948 TTGCTAAAAGGTACTCCCTACG 57.539 45.455 0.00 0.00 45.47 3.51
4730 8411 8.491958 ACTCCCTACGTTCCAAAATATAAGATT 58.508 33.333 0.00 0.00 0.00 2.40
4787 8468 4.497608 ACGCGTTTTAATGTGTTTGTTCAG 59.502 37.500 5.58 0.00 35.24 3.02
4800 8481 4.946772 TGTTTGTTCAGTCATTTCAGTCCA 59.053 37.500 0.00 0.00 0.00 4.02
4807 8488 7.765819 TGTTCAGTCATTTCAGTCCATATGTAG 59.234 37.037 1.24 0.00 0.00 2.74
4843 8524 8.472007 AGTACCCAAAACATCTTACAATTTGA 57.528 30.769 2.79 0.00 33.86 2.69
4869 8550 9.592196 AAACGGAGGGAGTACATAGTAATATTA 57.408 33.333 0.00 0.00 0.00 0.98
4922 8695 7.801716 TCTTATTTATTACATGACCTGCCAC 57.198 36.000 0.00 0.00 0.00 5.01
4968 8743 4.097286 ACAAAGTTCGTTACACCAAGCAAT 59.903 37.500 0.00 0.00 0.00 3.56
4978 8753 6.143278 CGTTACACCAAGCAATTAGGAAAAAC 59.857 38.462 0.00 0.00 0.00 2.43
5002 8778 7.398024 ACAAGGAGAATAAGCAGTAAACATCT 58.602 34.615 0.00 0.00 0.00 2.90
5003 8779 8.540388 ACAAGGAGAATAAGCAGTAAACATCTA 58.460 33.333 0.00 0.00 0.00 1.98
5040 8816 6.694411 GCTCAAAACATATAGCTGTTGGAATG 59.306 38.462 0.00 0.00 39.25 2.67
5042 8818 8.347004 TCAAAACATATAGCTGTTGGAATGAA 57.653 30.769 0.00 0.00 39.25 2.57
5097 9308 5.807011 CCTAGCATAACTGTTCCATTTTTGC 59.193 40.000 0.00 2.95 33.73 3.68
5104 9315 2.554032 CTGTTCCATTTTTGCGTCCTCT 59.446 45.455 0.00 0.00 0.00 3.69
5190 9595 5.241662 ACTATGCAAAGTCTTGAGGTCTTC 58.758 41.667 0.00 0.00 34.14 2.87
5226 9631 1.541147 TGTACTACAAACTCCGTCCCG 59.459 52.381 0.00 0.00 0.00 5.14
5331 9889 8.773645 TGTACTAATGAAACTCAACTCACAATG 58.226 33.333 0.00 0.00 0.00 2.82
5398 9956 2.475487 GTGTTTCCTAACGAGACAGCAC 59.525 50.000 0.00 0.00 36.34 4.40
5413 9971 2.763933 CAGCACCTGTATGGATAGCTG 58.236 52.381 0.00 0.00 45.15 4.24
5437 9995 0.600255 AAAACTCCAGTCACGGCGAG 60.600 55.000 16.62 5.72 0.00 5.03
5448 10006 1.144969 CACGGCGAGAAAGTGCTTAA 58.855 50.000 16.62 0.00 0.00 1.85
5510 10075 0.535780 TGGCACCAGCAGTTCTTCAG 60.536 55.000 0.00 0.00 44.61 3.02
5546 10112 4.332543 CGACAGATAAAGTGGCATGCTTTA 59.667 41.667 18.92 14.62 41.04 1.85
5601 10167 5.062308 GCAGAACACGTTGACCTTTAGATAG 59.938 44.000 0.00 0.00 0.00 2.08
5610 10176 7.148272 ACGTTGACCTTTAGATAGTACAGACTC 60.148 40.741 0.00 0.00 37.10 3.36
5654 10306 8.021898 TGGAGAAATTTCCAGTTCTGAATTTT 57.978 30.769 14.61 8.08 42.24 1.82
5668 10320 6.780706 TCTGAATTTTCTTTGGTCGTCTAC 57.219 37.500 0.00 0.00 0.00 2.59
5756 10460 5.048294 CCAACAGTACCTTGGGTTTGATTAC 60.048 44.000 10.83 0.00 37.09 1.89
5770 10474 6.321181 GGGTTTGATTACCTGCTTATTGATGA 59.679 38.462 0.00 0.00 38.30 2.92
5772 10476 8.416329 GGTTTGATTACCTGCTTATTGATGATT 58.584 33.333 0.00 0.00 35.23 2.57
5775 10479 8.985315 TGATTACCTGCTTATTGATGATTTCT 57.015 30.769 0.00 0.00 0.00 2.52
5902 10610 2.113860 ACCCGTGTCTGATTTCCATG 57.886 50.000 0.00 0.00 0.00 3.66
6271 11010 0.957888 GCAGGAAGAGGACAAGGTGC 60.958 60.000 0.00 0.00 0.00 5.01
6521 11263 0.443869 CTATTGCACACAGACACGGC 59.556 55.000 0.00 0.00 0.00 5.68
6554 11296 1.051556 GTAGCAAGGGAGGGAGGGAG 61.052 65.000 0.00 0.00 0.00 4.30
6556 11298 2.367512 CAAGGGAGGGAGGGAGGG 60.368 72.222 0.00 0.00 0.00 4.30
6557 11299 2.543637 AAGGGAGGGAGGGAGGGA 60.544 66.667 0.00 0.00 0.00 4.20
6558 11300 1.954994 AAGGGAGGGAGGGAGGGAT 60.955 63.158 0.00 0.00 0.00 3.85
6559 11301 2.122189 GGGAGGGAGGGAGGGATG 60.122 72.222 0.00 0.00 0.00 3.51
6560 11302 2.727071 GGGAGGGAGGGAGGGATGA 61.727 68.421 0.00 0.00 0.00 2.92
6570 11316 4.140536 GAGGGAGGGATGAATGAATGAAC 58.859 47.826 0.00 0.00 0.00 3.18
6792 11538 3.357079 CTGCGGTTGCCCTGTGAC 61.357 66.667 0.00 0.00 41.78 3.67
6828 11574 4.013050 GGAAGGAGGAATCTGTTGGAAAG 58.987 47.826 0.00 0.00 0.00 2.62
6831 11577 4.657013 AGGAGGAATCTGTTGGAAAGTTC 58.343 43.478 0.00 0.00 0.00 3.01
6832 11578 4.104738 AGGAGGAATCTGTTGGAAAGTTCA 59.895 41.667 0.00 0.00 0.00 3.18
6842 11588 6.978080 TCTGTTGGAAAGTTCAGCAAATTTAC 59.022 34.615 0.00 0.00 32.01 2.01
6848 11594 8.519526 TGGAAAGTTCAGCAAATTTACGATTAT 58.480 29.630 0.00 0.00 33.76 1.28
6853 11599 9.774742 AGTTCAGCAAATTTACGATTATTTCTC 57.225 29.630 0.00 0.00 0.00 2.87
6854 11600 9.554724 GTTCAGCAAATTTACGATTATTTCTCA 57.445 29.630 0.00 0.00 0.00 3.27
6886 11633 9.530633 AATTCATGACTAAAACGATACTACCTC 57.469 33.333 0.00 0.00 0.00 3.85
6887 11634 7.035840 TCATGACTAAAACGATACTACCTCC 57.964 40.000 0.00 0.00 0.00 4.30
6888 11635 5.490139 TGACTAAAACGATACTACCTCCG 57.510 43.478 0.00 0.00 0.00 4.63
6889 11636 4.943705 TGACTAAAACGATACTACCTCCGT 59.056 41.667 0.00 0.00 36.77 4.69
6890 11637 5.065218 TGACTAAAACGATACTACCTCCGTC 59.935 44.000 0.00 0.00 33.84 4.79
6891 11638 3.790152 AAAACGATACTACCTCCGTCC 57.210 47.619 0.00 0.00 33.84 4.79
6892 11639 2.725221 AACGATACTACCTCCGTCCT 57.275 50.000 0.00 0.00 33.84 3.85
6893 11640 1.964552 ACGATACTACCTCCGTCCTG 58.035 55.000 0.00 0.00 0.00 3.86
6894 11641 1.236628 CGATACTACCTCCGTCCTGG 58.763 60.000 0.00 0.00 40.09 4.45
6895 11642 1.476471 CGATACTACCTCCGTCCTGGT 60.476 57.143 0.00 0.00 39.52 4.00
6896 11643 2.664015 GATACTACCTCCGTCCTGGTT 58.336 52.381 0.00 0.00 39.52 3.67
6897 11644 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
6898 11645 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
6899 11646 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
6900 11647 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
6901 11648 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
6902 11649 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
6903 11650 1.379527 CTCCGTCCTGGTTTATTGGC 58.620 55.000 0.00 0.00 39.52 4.52
6904 11651 0.034863 TCCGTCCTGGTTTATTGGCC 60.035 55.000 0.00 0.00 39.52 5.36
6905 11652 1.035385 CCGTCCTGGTTTATTGGCCC 61.035 60.000 0.00 0.00 0.00 5.80
6906 11653 0.034477 CGTCCTGGTTTATTGGCCCT 60.034 55.000 0.00 0.00 0.00 5.19
6907 11654 1.763968 GTCCTGGTTTATTGGCCCTC 58.236 55.000 0.00 0.00 0.00 4.30
6908 11655 1.285078 GTCCTGGTTTATTGGCCCTCT 59.715 52.381 0.00 0.00 0.00 3.69
6909 11656 2.000048 TCCTGGTTTATTGGCCCTCTT 59.000 47.619 0.00 0.00 0.00 2.85
6910 11657 3.053917 GTCCTGGTTTATTGGCCCTCTTA 60.054 47.826 0.00 0.00 0.00 2.10
6911 11658 3.202151 TCCTGGTTTATTGGCCCTCTTAG 59.798 47.826 0.00 0.00 0.00 2.18
6912 11659 3.053619 CCTGGTTTATTGGCCCTCTTAGT 60.054 47.826 0.00 0.00 0.00 2.24
6913 11660 4.165372 CCTGGTTTATTGGCCCTCTTAGTA 59.835 45.833 0.00 0.00 0.00 1.82
6914 11661 5.163088 CCTGGTTTATTGGCCCTCTTAGTAT 60.163 44.000 0.00 0.00 0.00 2.12
6915 11662 6.335781 TGGTTTATTGGCCCTCTTAGTATT 57.664 37.500 0.00 0.00 0.00 1.89
6916 11663 6.737608 TGGTTTATTGGCCCTCTTAGTATTT 58.262 36.000 0.00 0.00 0.00 1.40
6917 11664 7.186268 TGGTTTATTGGCCCTCTTAGTATTTT 58.814 34.615 0.00 0.00 0.00 1.82
6918 11665 7.123547 TGGTTTATTGGCCCTCTTAGTATTTTG 59.876 37.037 0.00 0.00 0.00 2.44
6919 11666 7.123697 GGTTTATTGGCCCTCTTAGTATTTTGT 59.876 37.037 0.00 0.00 0.00 2.83
6920 11667 9.181061 GTTTATTGGCCCTCTTAGTATTTTGTA 57.819 33.333 0.00 0.00 0.00 2.41
6921 11668 9.756571 TTTATTGGCCCTCTTAGTATTTTGTAA 57.243 29.630 0.00 0.00 0.00 2.41
6922 11669 9.930158 TTATTGGCCCTCTTAGTATTTTGTAAT 57.070 29.630 0.00 0.00 0.00 1.89
6923 11670 7.875327 TTGGCCCTCTTAGTATTTTGTAATC 57.125 36.000 0.00 0.00 0.00 1.75
6924 11671 6.964464 TGGCCCTCTTAGTATTTTGTAATCA 58.036 36.000 0.00 0.00 0.00 2.57
6925 11672 7.406916 TGGCCCTCTTAGTATTTTGTAATCAA 58.593 34.615 0.00 0.00 0.00 2.57
6926 11673 7.891183 TGGCCCTCTTAGTATTTTGTAATCAAA 59.109 33.333 0.00 0.00 41.10 2.69
6927 11674 8.914011 GGCCCTCTTAGTATTTTGTAATCAAAT 58.086 33.333 0.00 0.00 42.14 2.32
6983 11730 7.686438 ATGCATGTCACAAAAAGTAGTATCA 57.314 32.000 0.00 0.00 0.00 2.15
6984 11731 7.686438 TGCATGTCACAAAAAGTAGTATCAT 57.314 32.000 0.00 0.00 0.00 2.45
6985 11732 8.109705 TGCATGTCACAAAAAGTAGTATCATT 57.890 30.769 0.00 0.00 0.00 2.57
6986 11733 8.022550 TGCATGTCACAAAAAGTAGTATCATTG 58.977 33.333 0.00 0.00 0.00 2.82
6987 11734 8.236586 GCATGTCACAAAAAGTAGTATCATTGA 58.763 33.333 0.00 0.00 0.00 2.57
6999 11746 9.701098 AAGTAGTATCATTGAAAACTACGTTCA 57.299 29.630 23.35 0.00 45.70 3.18
7000 11747 9.701098 AGTAGTATCATTGAAAACTACGTTCAA 57.299 29.630 23.35 0.00 45.70 2.69
7011 11758 9.491675 TGAAAACTACGTTCAAATACTAATCCA 57.508 29.630 0.00 0.00 32.13 3.41
7094 11841 9.575783 TTTTTGACACAAAATACAAAGTAGACC 57.424 29.630 9.82 0.00 34.54 3.85
7095 11842 7.867305 TTGACACAAAATACAAAGTAGACCA 57.133 32.000 0.00 0.00 0.00 4.02
7096 11843 7.867305 TGACACAAAATACAAAGTAGACCAA 57.133 32.000 0.00 0.00 0.00 3.67
7097 11844 8.458573 TGACACAAAATACAAAGTAGACCAAT 57.541 30.769 0.00 0.00 0.00 3.16
7098 11845 9.562408 TGACACAAAATACAAAGTAGACCAATA 57.438 29.630 0.00 0.00 0.00 1.90
7105 11852 8.575649 AATACAAAGTAGACCAATAAACCAGG 57.424 34.615 0.00 0.00 0.00 4.45
7106 11853 5.321927 ACAAAGTAGACCAATAAACCAGGG 58.678 41.667 0.00 0.00 0.00 4.45
7107 11854 3.646736 AGTAGACCAATAAACCAGGGC 57.353 47.619 0.00 0.00 0.00 5.19
7108 11855 2.093128 AGTAGACCAATAAACCAGGGCG 60.093 50.000 0.00 0.00 34.90 6.13
7109 11856 0.034477 AGACCAATAAACCAGGGCGG 60.034 55.000 0.00 0.00 42.50 6.13
7110 11857 0.034863 GACCAATAAACCAGGGCGGA 60.035 55.000 0.00 0.00 38.63 5.54
7111 11858 0.034477 ACCAATAAACCAGGGCGGAG 60.034 55.000 0.00 0.00 38.63 4.63
7112 11859 0.751643 CCAATAAACCAGGGCGGAGG 60.752 60.000 0.00 0.00 38.63 4.30
7113 11860 0.034477 CAATAAACCAGGGCGGAGGT 60.034 55.000 0.00 0.00 40.61 3.85
7114 11861 1.210967 CAATAAACCAGGGCGGAGGTA 59.789 52.381 0.00 0.00 37.07 3.08
7115 11862 1.129058 ATAAACCAGGGCGGAGGTAG 58.871 55.000 0.00 0.00 37.07 3.18
7116 11863 0.252375 TAAACCAGGGCGGAGGTAGT 60.252 55.000 0.00 0.00 37.07 2.73
7117 11864 0.252375 AAACCAGGGCGGAGGTAGTA 60.252 55.000 0.00 0.00 37.07 1.82
7126 11873 4.141065 AGGGCGGAGGTAGTAGTTATTAGT 60.141 45.833 0.00 0.00 0.00 2.24
7160 11907 9.595823 GTTTTAGCATACTAGATAAACAGGACA 57.404 33.333 0.00 0.00 31.36 4.02
7163 11910 7.182817 AGCATACTAGATAAACAGGACAACA 57.817 36.000 0.00 0.00 0.00 3.33
7164 11911 7.796054 AGCATACTAGATAAACAGGACAACAT 58.204 34.615 0.00 0.00 0.00 2.71
7165 11912 7.928706 AGCATACTAGATAAACAGGACAACATC 59.071 37.037 0.00 0.00 0.00 3.06
7166 11913 7.710907 GCATACTAGATAAACAGGACAACATCA 59.289 37.037 0.00 0.00 0.00 3.07
7167 11914 9.770097 CATACTAGATAAACAGGACAACATCAT 57.230 33.333 0.00 0.00 0.00 2.45
7169 11916 8.498054 ACTAGATAAACAGGACAACATCATTG 57.502 34.615 0.00 0.00 0.00 2.82
7170 11917 6.764308 AGATAAACAGGACAACATCATTGG 57.236 37.500 0.00 0.00 0.00 3.16
7171 11918 6.484288 AGATAAACAGGACAACATCATTGGA 58.516 36.000 0.00 0.00 0.00 3.53
7172 11919 4.853924 AAACAGGACAACATCATTGGAC 57.146 40.909 0.00 0.00 0.00 4.02
7173 11920 3.507162 ACAGGACAACATCATTGGACA 57.493 42.857 0.00 0.00 0.00 4.02
7174 11921 4.038271 ACAGGACAACATCATTGGACAT 57.962 40.909 0.00 0.00 0.00 3.06
7175 11922 3.760151 ACAGGACAACATCATTGGACATG 59.240 43.478 0.00 0.00 0.00 3.21
7176 11923 2.756760 AGGACAACATCATTGGACATGC 59.243 45.455 0.00 0.00 0.00 4.06
7177 11924 2.492881 GGACAACATCATTGGACATGCA 59.507 45.455 0.00 0.00 0.00 3.96
7182 11929 4.603989 ACATCATTGGACATGCAACAAA 57.396 36.364 0.00 0.00 0.00 2.83
7240 12017 4.934602 TCACATGATCAGATTACAACGCAA 59.065 37.500 0.00 0.00 0.00 4.85
7267 12044 4.025061 CCGATCGTTCGTAGATGAAGTAGT 60.025 45.833 15.09 0.00 43.97 2.73
7268 12045 5.131890 CGATCGTTCGTAGATGAAGTAGTC 58.868 45.833 7.03 0.00 40.53 2.59
7269 12046 4.511457 TCGTTCGTAGATGAAGTAGTCG 57.489 45.455 0.00 0.00 35.04 4.18
7270 12047 4.176271 TCGTTCGTAGATGAAGTAGTCGA 58.824 43.478 0.00 0.00 35.04 4.20
7271 12048 4.627035 TCGTTCGTAGATGAAGTAGTCGAA 59.373 41.667 0.00 0.00 35.04 3.71
7272 12049 4.956778 CGTTCGTAGATGAAGTAGTCGAAG 59.043 45.833 0.00 0.00 36.72 3.79
7273 12050 4.533225 TCGTAGATGAAGTAGTCGAAGC 57.467 45.455 0.00 0.00 0.00 3.86
7274 12051 3.937079 TCGTAGATGAAGTAGTCGAAGCA 59.063 43.478 0.00 0.00 0.00 3.91
7275 12052 4.034163 TCGTAGATGAAGTAGTCGAAGCAG 59.966 45.833 0.00 0.00 0.00 4.24
7276 12053 4.034163 CGTAGATGAAGTAGTCGAAGCAGA 59.966 45.833 0.00 0.00 0.00 4.26
7277 12054 4.630894 AGATGAAGTAGTCGAAGCAGAG 57.369 45.455 0.00 0.00 0.00 3.35
7278 12055 3.380004 AGATGAAGTAGTCGAAGCAGAGG 59.620 47.826 0.00 0.00 0.00 3.69
7279 12056 2.515854 TGAAGTAGTCGAAGCAGAGGT 58.484 47.619 0.00 0.00 0.00 3.85
7280 12057 2.891580 TGAAGTAGTCGAAGCAGAGGTT 59.108 45.455 0.00 0.00 0.00 3.50
7281 12058 3.246619 GAAGTAGTCGAAGCAGAGGTTG 58.753 50.000 0.00 0.00 0.00 3.77
7282 12059 1.546476 AGTAGTCGAAGCAGAGGTTGG 59.454 52.381 0.00 0.00 0.00 3.77
7283 12060 1.272769 GTAGTCGAAGCAGAGGTTGGT 59.727 52.381 0.00 0.00 39.75 3.67
7284 12061 0.034059 AGTCGAAGCAGAGGTTGGTG 59.966 55.000 0.00 0.00 37.63 4.17
7285 12062 0.033504 GTCGAAGCAGAGGTTGGTGA 59.966 55.000 0.00 0.00 37.63 4.02
7286 12063 0.033504 TCGAAGCAGAGGTTGGTGAC 59.966 55.000 0.00 0.00 37.63 3.67
7287 12064 0.249868 CGAAGCAGAGGTTGGTGACA 60.250 55.000 0.00 0.00 37.63 3.58
7297 12074 2.283101 TGGTGACAATGGCCCTGC 60.283 61.111 0.00 0.00 37.44 4.85
7298 12075 3.443045 GGTGACAATGGCCCTGCG 61.443 66.667 0.00 0.00 0.00 5.18
7299 12076 2.672996 GTGACAATGGCCCTGCGT 60.673 61.111 0.00 0.00 0.00 5.24
7300 12077 2.672651 TGACAATGGCCCTGCGTG 60.673 61.111 0.00 0.00 0.00 5.34
7301 12078 3.443045 GACAATGGCCCTGCGTGG 61.443 66.667 0.00 0.00 0.00 4.94
7314 12091 4.345962 CGTGGGTGCGTGACGGTA 62.346 66.667 7.25 0.00 0.00 4.02
7315 12092 2.431942 GTGGGTGCGTGACGGTAG 60.432 66.667 7.25 0.00 0.00 3.18
7316 12093 2.913578 TGGGTGCGTGACGGTAGT 60.914 61.111 7.25 0.00 0.00 2.73
7317 12094 1.603171 TGGGTGCGTGACGGTAGTA 60.603 57.895 7.25 0.00 0.00 1.82
7318 12095 1.153958 GGGTGCGTGACGGTAGTAC 60.154 63.158 7.25 0.00 0.00 2.73
7319 12096 1.589716 GGGTGCGTGACGGTAGTACT 61.590 60.000 7.25 0.00 0.00 2.73
7320 12097 1.086696 GGTGCGTGACGGTAGTACTA 58.913 55.000 7.25 0.00 0.00 1.82
7321 12098 1.202076 GGTGCGTGACGGTAGTACTAC 60.202 57.143 22.53 22.53 35.40 2.73
7322 12099 1.734465 GTGCGTGACGGTAGTACTACT 59.266 52.381 27.71 12.92 36.36 2.57
7323 12100 2.160417 GTGCGTGACGGTAGTACTACTT 59.840 50.000 27.71 17.44 36.36 2.24
7324 12101 2.813754 TGCGTGACGGTAGTACTACTTT 59.186 45.455 27.71 17.12 36.36 2.66
7325 12102 3.166657 GCGTGACGGTAGTACTACTTTG 58.833 50.000 27.71 20.53 36.36 2.77
7326 12103 3.365364 GCGTGACGGTAGTACTACTTTGT 60.365 47.826 27.71 22.97 36.36 2.83
7327 12104 4.153986 CGTGACGGTAGTACTACTTTGTG 58.846 47.826 27.71 16.54 36.36 3.33
7328 12105 3.916776 GTGACGGTAGTACTACTTTGTGC 59.083 47.826 27.71 17.65 36.36 4.57
7329 12106 3.569277 TGACGGTAGTACTACTTTGTGCA 59.431 43.478 27.71 19.26 36.36 4.57
7330 12107 4.219070 TGACGGTAGTACTACTTTGTGCAT 59.781 41.667 27.71 3.31 36.36 3.96
7331 12108 5.143376 ACGGTAGTACTACTTTGTGCATT 57.857 39.130 27.71 4.50 36.36 3.56
7332 12109 5.544650 ACGGTAGTACTACTTTGTGCATTT 58.455 37.500 27.71 3.93 36.36 2.32
7333 12110 5.993441 ACGGTAGTACTACTTTGTGCATTTT 59.007 36.000 27.71 3.36 36.36 1.82
7334 12111 6.146673 ACGGTAGTACTACTTTGTGCATTTTC 59.853 38.462 27.71 9.32 36.36 2.29
7335 12112 6.146510 CGGTAGTACTACTTTGTGCATTTTCA 59.853 38.462 27.71 0.00 36.36 2.69
7336 12113 7.307514 CGGTAGTACTACTTTGTGCATTTTCAA 60.308 37.037 27.71 0.00 36.36 2.69
7337 12114 8.347035 GGTAGTACTACTTTGTGCATTTTCAAA 58.653 33.333 27.71 0.00 36.36 2.69
7344 12121 6.963017 CTTTGTGCATTTTCAAAGCAAATC 57.037 33.333 12.81 0.00 42.12 2.17
7345 12122 6.432607 TTTGTGCATTTTCAAAGCAAATCA 57.567 29.167 0.00 0.00 40.35 2.57
7346 12123 6.432607 TTGTGCATTTTCAAAGCAAATCAA 57.567 29.167 0.00 0.00 40.35 2.57
7347 12124 6.432607 TGTGCATTTTCAAAGCAAATCAAA 57.567 29.167 0.00 0.00 40.35 2.69
7348 12125 6.849502 TGTGCATTTTCAAAGCAAATCAAAA 58.150 28.000 0.00 0.00 40.35 2.44
7349 12126 7.310664 TGTGCATTTTCAAAGCAAATCAAAAA 58.689 26.923 0.00 0.00 40.35 1.94
7393 12170 9.844257 TCAAACCAAACCAATTTTATGATTTCT 57.156 25.926 0.00 0.00 0.00 2.52
7413 12190 9.989869 GATTTCTAGTTTTTGATACAGTAAGGC 57.010 33.333 0.00 0.00 0.00 4.35
7414 12191 9.740710 ATTTCTAGTTTTTGATACAGTAAGGCT 57.259 29.630 0.00 0.00 0.00 4.58
7415 12192 9.569122 TTTCTAGTTTTTGATACAGTAAGGCTT 57.431 29.630 4.58 4.58 0.00 4.35
7420 12197 9.515226 AGTTTTTGATACAGTAAGGCTTAATCA 57.485 29.630 8.86 11.37 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 7.882755 AGGAAGGTGAATGAGGGATTTTAATA 58.117 34.615 0.00 0.00 0.00 0.98
39 41 4.440802 CGACTAGAAGGAAGGTGAATGAGG 60.441 50.000 0.00 0.00 0.00 3.86
48 50 8.410141 GGATCAATATATCGACTAGAAGGAAGG 58.590 40.741 0.00 0.00 0.00 3.46
51 53 9.616156 GTAGGATCAATATATCGACTAGAAGGA 57.384 37.037 0.00 0.00 0.00 3.36
72 74 7.728532 TCATGGAGCATACTTACTATTGTAGGA 59.271 37.037 3.58 0.00 31.27 2.94
73 75 7.896811 TCATGGAGCATACTTACTATTGTAGG 58.103 38.462 0.00 0.00 32.77 3.18
74 76 9.416794 CTTCATGGAGCATACTTACTATTGTAG 57.583 37.037 0.00 0.00 0.00 2.74
98 100 8.677148 ATTGTACAATTGTTGTGTCTCTACTT 57.323 30.769 17.78 0.00 45.03 2.24
110 112 8.918961 TTCGAAAGTGAAATTGTACAATTGTT 57.081 26.923 29.54 17.82 40.57 2.83
162 178 7.776618 TGACCTCTCAGTAGTCTTATTTTCA 57.223 36.000 0.00 0.00 0.00 2.69
171 187 4.938226 CCCAATTTTGACCTCTCAGTAGTC 59.062 45.833 0.00 0.00 0.00 2.59
175 191 4.453480 TTCCCAATTTTGACCTCTCAGT 57.547 40.909 0.00 0.00 0.00 3.41
178 194 7.090808 GTGTAATTTCCCAATTTTGACCTCTC 58.909 38.462 0.00 0.00 34.29 3.20
206 222 0.839946 ATGGACGCCCTTGCTAAGAT 59.160 50.000 0.00 0.00 34.43 2.40
209 225 1.834896 TCTTATGGACGCCCTTGCTAA 59.165 47.619 0.00 0.00 34.43 3.09
220 236 4.156455 TGGAGGCTGAAATCTTATGGAC 57.844 45.455 0.00 0.00 0.00 4.02
224 240 4.952335 CCTTGTTGGAGGCTGAAATCTTAT 59.048 41.667 0.00 0.00 38.35 1.73
250 266 0.690762 AGTAGTCGGTTTGCATGGGT 59.309 50.000 0.00 0.00 0.00 4.51
262 278 3.556513 GGCAATCGATGAGTAGTAGTCG 58.443 50.000 0.00 0.00 35.55 4.18
385 416 1.873591 CGGGTGTTTTGAGAGTTGAGG 59.126 52.381 0.00 0.00 0.00 3.86
421 452 7.812669 GGTGTTTTCTTTTTCTCTTTTCTGTGA 59.187 33.333 0.00 0.00 0.00 3.58
425 456 9.856488 GTTAGGTGTTTTCTTTTTCTCTTTTCT 57.144 29.630 0.00 0.00 0.00 2.52
611 642 3.325753 GGTGCAGAGGAGCAGGGT 61.326 66.667 0.00 0.00 46.69 4.34
734 765 3.078305 AGGAAGAAGGAGAGGAGGAAGAA 59.922 47.826 0.00 0.00 0.00 2.52
735 766 2.657459 AGGAAGAAGGAGAGGAGGAAGA 59.343 50.000 0.00 0.00 0.00 2.87
736 767 3.031013 GAGGAAGAAGGAGAGGAGGAAG 58.969 54.545 0.00 0.00 0.00 3.46
737 768 2.292587 GGAGGAAGAAGGAGAGGAGGAA 60.293 54.545 0.00 0.00 0.00 3.36
738 769 1.289530 GGAGGAAGAAGGAGAGGAGGA 59.710 57.143 0.00 0.00 0.00 3.71
739 770 1.290732 AGGAGGAAGAAGGAGAGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
740 771 2.244769 AGAGGAGGAAGAAGGAGAGGAG 59.755 54.545 0.00 0.00 0.00 3.69
741 772 2.243736 GAGAGGAGGAAGAAGGAGAGGA 59.756 54.545 0.00 0.00 0.00 3.71
742 773 2.666317 GAGAGGAGGAAGAAGGAGAGG 58.334 57.143 0.00 0.00 0.00 3.69
743 774 2.244769 AGGAGAGGAGGAAGAAGGAGAG 59.755 54.545 0.00 0.00 0.00 3.20
744 775 2.293246 AGGAGAGGAGGAAGAAGGAGA 58.707 52.381 0.00 0.00 0.00 3.71
745 776 2.846665 AGGAGAGGAGGAAGAAGGAG 57.153 55.000 0.00 0.00 0.00 3.69
746 777 2.657459 AGAAGGAGAGGAGGAAGAAGGA 59.343 50.000 0.00 0.00 0.00 3.36
747 778 3.114643 AGAAGGAGAGGAGGAAGAAGG 57.885 52.381 0.00 0.00 0.00 3.46
748 779 3.450817 GGAAGAAGGAGAGGAGGAAGAAG 59.549 52.174 0.00 0.00 0.00 2.85
749 780 3.078305 AGGAAGAAGGAGAGGAGGAAGAA 59.922 47.826 0.00 0.00 0.00 2.52
750 781 2.657459 AGGAAGAAGGAGAGGAGGAAGA 59.343 50.000 0.00 0.00 0.00 2.87
751 782 2.765699 CAGGAAGAAGGAGAGGAGGAAG 59.234 54.545 0.00 0.00 0.00 3.46
752 783 2.826488 CAGGAAGAAGGAGAGGAGGAA 58.174 52.381 0.00 0.00 0.00 3.36
753 784 1.621072 GCAGGAAGAAGGAGAGGAGGA 60.621 57.143 0.00 0.00 0.00 3.71
754 785 0.829990 GCAGGAAGAAGGAGAGGAGG 59.170 60.000 0.00 0.00 0.00 4.30
755 786 1.566211 TGCAGGAAGAAGGAGAGGAG 58.434 55.000 0.00 0.00 0.00 3.69
756 787 1.905215 CTTGCAGGAAGAAGGAGAGGA 59.095 52.381 0.00 0.00 32.82 3.71
757 788 1.065564 CCTTGCAGGAAGAAGGAGAGG 60.066 57.143 2.61 0.00 41.26 3.69
758 789 1.627834 ACCTTGCAGGAAGAAGGAGAG 59.372 52.381 6.87 0.00 41.26 3.20
759 790 1.734655 ACCTTGCAGGAAGAAGGAGA 58.265 50.000 6.87 0.00 41.26 3.71
760 791 3.922171 ATACCTTGCAGGAAGAAGGAG 57.078 47.619 6.87 0.00 41.26 3.69
761 792 3.454812 GGTATACCTTGCAGGAAGAAGGA 59.545 47.826 15.09 0.00 41.26 3.36
762 793 3.741388 CGGTATACCTTGCAGGAAGAAGG 60.741 52.174 19.68 3.89 43.90 3.46
763 794 3.118738 ACGGTATACCTTGCAGGAAGAAG 60.119 47.826 19.68 2.03 37.67 2.85
773 804 3.033184 TCTTGGGGTACGGTATACCTTG 58.967 50.000 19.68 7.74 37.71 3.61
800 831 0.771755 GAAGAGGGGTGGTCCTTTGT 59.228 55.000 0.00 0.00 37.25 2.83
867 919 2.740981 CAGAACAGATCAAGAAGCGCTT 59.259 45.455 25.35 25.35 37.29 4.68
940 992 1.751924 CTGCTCACCTACTACTCACCC 59.248 57.143 0.00 0.00 0.00 4.61
941 993 2.164624 CACTGCTCACCTACTACTCACC 59.835 54.545 0.00 0.00 0.00 4.02
942 994 3.082548 TCACTGCTCACCTACTACTCAC 58.917 50.000 0.00 0.00 0.00 3.51
943 995 3.348119 CTCACTGCTCACCTACTACTCA 58.652 50.000 0.00 0.00 0.00 3.41
1234 1286 0.453390 GAGGGCTACAGCATGCAAAC 59.547 55.000 21.98 4.03 42.53 2.93
1412 1473 3.090532 GAGGCCAATCTCCCCGGT 61.091 66.667 5.01 0.00 0.00 5.28
2274 2431 1.238439 TGAGCTAGCCACAGCAAAAC 58.762 50.000 12.13 0.00 44.35 2.43
2300 2457 7.806014 AGCATGACGAAATAAAAATACGTTTGT 59.194 29.630 0.00 0.00 37.32 2.83
2423 2778 5.333645 CGAAATCTCAAGCCCATTATCTTCG 60.334 44.000 0.00 0.00 0.00 3.79
2474 2830 7.923888 ACTGCAATTACAAGATGCTTATGTAG 58.076 34.615 0.00 0.00 40.66 2.74
2483 3881 7.011389 TCCTATCGAAACTGCAATTACAAGATG 59.989 37.037 0.00 0.00 0.00 2.90
2652 4050 5.419155 TGTGTGGTTATGACAACTTGGAAAA 59.581 36.000 0.00 0.00 30.58 2.29
2654 4052 4.527944 TGTGTGGTTATGACAACTTGGAA 58.472 39.130 0.00 0.00 30.58 3.53
2656 4054 4.278170 ACATGTGTGGTTATGACAACTTGG 59.722 41.667 0.00 0.00 30.58 3.61
2657 4055 5.437289 ACATGTGTGGTTATGACAACTTG 57.563 39.130 0.00 0.62 30.58 3.16
2658 4056 6.463995 AAACATGTGTGGTTATGACAACTT 57.536 33.333 0.00 0.00 32.25 2.66
2659 4057 6.463995 AAAACATGTGTGGTTATGACAACT 57.536 33.333 0.00 0.00 33.06 3.16
2660 4058 6.509358 GCAAAAACATGTGTGGTTATGACAAC 60.509 38.462 0.00 0.00 33.06 3.32
2701 4099 6.093357 TGTCTATGCATGCTCGAAAATGTTTA 59.907 34.615 20.33 0.00 0.00 2.01
2711 4109 3.646946 AGTGTATGTCTATGCATGCTCG 58.353 45.455 20.33 7.17 33.55 5.03
2712 4110 5.998454 AAAGTGTATGTCTATGCATGCTC 57.002 39.130 20.33 5.01 33.55 4.26
2775 4173 1.577328 AATTTCTCAGCACCACCGCG 61.577 55.000 0.00 0.00 36.85 6.46
2789 4187 3.429410 GCATGTCAAGTGGGCCTAATTTC 60.429 47.826 4.53 0.00 0.00 2.17
2867 4313 3.969117 AATGCACGCATTCGACATAAT 57.031 38.095 11.41 0.00 42.32 1.28
2961 4444 5.410924 GCAAGTAATTCCTGAAAACCCATC 58.589 41.667 0.00 0.00 0.00 3.51
2963 4446 3.254657 CGCAAGTAATTCCTGAAAACCCA 59.745 43.478 0.00 0.00 0.00 4.51
2984 4467 5.043903 ACTCGGATGTTCATGATAGAAACG 58.956 41.667 0.00 0.00 0.00 3.60
2985 4468 6.910536 AACTCGGATGTTCATGATAGAAAC 57.089 37.500 0.00 0.00 0.00 2.78
3003 4486 2.680841 TGTTTTCACCACTCCAAACTCG 59.319 45.455 0.00 0.00 31.59 4.18
3132 4616 3.389983 TGGCCACAAGAACTACTGTTACT 59.610 43.478 0.00 0.00 36.39 2.24
3249 5241 3.458189 ACTAGGCACGTAAAGATCATGC 58.542 45.455 0.00 0.00 35.51 4.06
3278 5271 7.074653 AGTGGTAAAACTGATAGGAAACTCA 57.925 36.000 0.00 0.00 43.67 3.41
3344 5341 2.760092 ACATGCACACAGACCAACTTTT 59.240 40.909 0.00 0.00 0.00 2.27
3345 5342 2.378038 ACATGCACACAGACCAACTTT 58.622 42.857 0.00 0.00 0.00 2.66
3370 5367 4.174009 CTCAACATGTACGGAGTTAGTGG 58.826 47.826 0.00 0.00 37.78 4.00
3534 6218 8.978874 AGTTGCATATGGTATCATTAACTCAA 57.021 30.769 4.56 0.00 34.96 3.02
3604 6293 6.492007 TTCTTACGTGTGACCTAACTAGAG 57.508 41.667 0.00 0.00 0.00 2.43
3679 6591 9.547753 GATTCTTAAGGACTATCATGTAAGCAA 57.452 33.333 1.85 0.00 0.00 3.91
3706 6618 4.876107 CCGAGCAAACTGAACATACCTATT 59.124 41.667 0.00 0.00 0.00 1.73
3820 6737 5.843969 AGGCTATCCCCTTTTGAAAAGAAAA 59.156 36.000 18.59 4.11 0.00 2.29
3822 6739 5.010708 AGGCTATCCCCTTTTGAAAAGAA 57.989 39.130 18.59 4.78 0.00 2.52
3829 6752 2.024941 AGGTCAAGGCTATCCCCTTTTG 60.025 50.000 0.00 0.00 42.48 2.44
3841 6764 1.307097 GATGATGCAGAGGTCAAGGC 58.693 55.000 0.00 0.00 0.00 4.35
3847 6770 2.235845 CATCACGATGATGCAGAGGT 57.764 50.000 12.77 0.00 46.37 3.85
3918 6841 3.967332 AGGCATAAACAATTGCTGCTT 57.033 38.095 17.14 10.55 38.88 3.91
3947 6871 8.818141 TCATAATTCGAATCTTATGTGAGGTC 57.182 34.615 22.00 0.00 36.90 3.85
3977 6902 5.992217 AGCGAAGTCAAAATATATGGAGACC 59.008 40.000 7.63 0.00 0.00 3.85
4101 7073 9.020731 TCTTGTACTCCTTTTTGATATTTTCCC 57.979 33.333 0.00 0.00 0.00 3.97
4135 7107 4.764823 TCTTCCGTTTTCTTGCCATAATGT 59.235 37.500 0.00 0.00 0.00 2.71
4139 7111 4.280436 TCTCTTCCGTTTTCTTGCCATA 57.720 40.909 0.00 0.00 0.00 2.74
4152 7124 5.341617 AGCTTACGTCTTTTATCTCTTCCG 58.658 41.667 0.00 0.00 0.00 4.30
4204 7188 6.878923 TCTTGTCGATGAGAACAATTAACCAT 59.121 34.615 0.00 0.00 0.00 3.55
4213 7197 5.330455 AGCTTATCTTGTCGATGAGAACA 57.670 39.130 5.02 0.00 37.82 3.18
4224 7208 6.071108 ACCATGCTCGATATAGCTTATCTTGT 60.071 38.462 0.00 0.00 43.19 3.16
4289 7318 3.350219 AACCGTGATAAAGCCATCTGT 57.650 42.857 0.00 0.00 0.00 3.41
4294 7323 4.546829 ACTCTTAACCGTGATAAAGCCA 57.453 40.909 0.00 0.00 0.00 4.75
4504 7533 5.221986 CCTTTCCCACATCTCCATGATATCA 60.222 44.000 8.10 8.10 33.36 2.15
4508 7537 3.125656 TCCTTTCCCACATCTCCATGAT 58.874 45.455 0.00 0.00 33.72 2.45
4515 7544 3.266772 TGCTAACATCCTTTCCCACATCT 59.733 43.478 0.00 0.00 0.00 2.90
4630 7661 2.159099 TCCTGTGAAGTGCATATCGGAC 60.159 50.000 0.00 0.00 35.88 4.79
4745 8426 6.143496 ACGCGTCTATACACATCTGATTTAG 58.857 40.000 5.58 0.00 0.00 1.85
4746 8427 6.068473 ACGCGTCTATACACATCTGATTTA 57.932 37.500 5.58 0.00 0.00 1.40
4747 8428 4.933330 ACGCGTCTATACACATCTGATTT 58.067 39.130 5.58 0.00 0.00 2.17
4750 8431 4.365899 AAACGCGTCTATACACATCTGA 57.634 40.909 14.44 0.00 0.00 3.27
4807 8488 9.614792 AGATGTTTTGGGTACTTCAATATAGAC 57.385 33.333 0.00 0.00 0.00 2.59
4831 8512 4.975631 TCCCTCCGTTTCAAATTGTAAGA 58.024 39.130 0.00 0.00 0.00 2.10
4836 8517 4.069304 TGTACTCCCTCCGTTTCAAATTG 58.931 43.478 0.00 0.00 0.00 2.32
4843 8524 8.488308 AATATTACTATGTACTCCCTCCGTTT 57.512 34.615 0.00 0.00 0.00 3.60
4968 8743 7.724061 ACTGCTTATTCTCCTTGTTTTTCCTAA 59.276 33.333 0.00 0.00 0.00 2.69
4978 8753 7.856145 AGATGTTTACTGCTTATTCTCCTTG 57.144 36.000 0.00 0.00 0.00 3.61
5097 9308 8.077386 GTCATAATAAAAGGTCTAGAGAGGACG 58.923 40.741 0.00 0.00 34.82 4.79
5104 9315 6.039047 ACTCGCGTCATAATAAAAGGTCTAGA 59.961 38.462 5.77 0.00 0.00 2.43
5190 9595 3.525537 AGTACATGTTGGATCTTCAGCG 58.474 45.455 2.30 0.00 0.00 5.18
5226 9631 8.865090 AGCTATGGATGCAACTATATATACTCC 58.135 37.037 0.52 0.00 0.00 3.85
5276 9797 3.244700 ACCTTCTGAAACCAGACATCAGG 60.245 47.826 8.54 8.54 40.14 3.86
5398 9956 3.690475 TCATGCAGCTATCCATACAGG 57.310 47.619 0.00 0.00 39.47 4.00
5413 9971 1.197721 CCGTGACTGGAGTTTTCATGC 59.802 52.381 0.00 0.00 0.00 4.06
5437 9995 9.600646 GAAACAGAGACTATTTTAAGCACTTTC 57.399 33.333 0.00 0.00 0.00 2.62
5448 10006 5.703130 GTGCTTCAGGAAACAGAGACTATTT 59.297 40.000 0.00 0.00 0.00 1.40
5586 10152 8.053026 TGAGTCTGTACTATCTAAAGGTCAAC 57.947 38.462 0.00 0.00 35.56 3.18
5601 10167 3.785486 TGTGCTATGCATGAGTCTGTAC 58.215 45.455 10.16 3.20 41.91 2.90
5610 10176 2.488153 CCATGAGGATGTGCTATGCATG 59.512 50.000 10.16 0.26 37.86 4.06
5654 10306 4.215827 GTCTCAAGAGTAGACGACCAAAGA 59.784 45.833 0.00 0.00 34.50 2.52
5668 10320 9.578439 AAAAACTTCTGAAAAATGTCTCAAGAG 57.422 29.630 0.00 0.00 0.00 2.85
5756 10460 8.248945 AGAACAAAGAAATCATCAATAAGCAGG 58.751 33.333 0.00 0.00 0.00 4.85
5770 10474 6.705863 ACTTCAGAAGCAGAACAAAGAAAT 57.294 33.333 10.33 0.00 0.00 2.17
5772 10476 6.349300 ACTACTTCAGAAGCAGAACAAAGAA 58.651 36.000 16.26 0.00 0.00 2.52
5775 10479 5.989777 GGTACTACTTCAGAAGCAGAACAAA 59.010 40.000 16.26 0.00 0.00 2.83
5902 10610 8.362639 ACCATTTCATCTTGCATTATTGATACC 58.637 33.333 0.00 0.00 0.00 2.73
6294 11033 0.036388 TGTTGATCTGCTTCGGGTCC 60.036 55.000 0.00 0.00 0.00 4.46
6399 11141 2.721167 CGTGCCGGAAGAGGATCCA 61.721 63.158 15.82 0.00 39.61 3.41
6521 11263 3.370978 CCTTGCTACTAATCACACAACCG 59.629 47.826 0.00 0.00 0.00 4.44
6554 11296 6.875726 TCTGATATCGTTCATTCATTCATCCC 59.124 38.462 0.00 0.00 0.00 3.85
6723 11469 4.372656 GCTATTGTGGTAGTAGCTTGAGG 58.627 47.826 0.00 0.00 40.39 3.86
6792 11538 3.088532 CTCCTTCCTATCGAGAGGGATG 58.911 54.545 25.26 14.51 38.67 3.51
6828 11574 9.554724 TGAGAAATAATCGTAAATTTGCTGAAC 57.445 29.630 0.00 0.00 0.00 3.18
6831 11577 9.720667 TCATGAGAAATAATCGTAAATTTGCTG 57.279 29.630 0.00 0.00 0.00 4.41
6869 11616 4.578105 AGGACGGAGGTAGTATCGTTTTAG 59.422 45.833 0.00 0.00 35.91 1.85
6876 11623 2.361643 ACCAGGACGGAGGTAGTATC 57.638 55.000 0.00 0.00 36.07 2.24
6877 11624 2.842645 AACCAGGACGGAGGTAGTAT 57.157 50.000 0.00 0.00 37.07 2.12
6878 11625 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
6879 11626 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
6880 11627 3.431766 CCAATAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
6881 11628 2.502538 CCAATAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
6882 11629 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
6883 11630 2.017113 GCCAATAAACCAGGACGGAGG 61.017 57.143 0.00 0.00 38.63 4.30
6884 11631 1.379527 GCCAATAAACCAGGACGGAG 58.620 55.000 0.00 0.00 38.63 4.63
6885 11632 0.034863 GGCCAATAAACCAGGACGGA 60.035 55.000 0.00 0.00 38.63 4.69
6886 11633 1.035385 GGGCCAATAAACCAGGACGG 61.035 60.000 4.39 0.00 42.50 4.79
6887 11634 0.034477 AGGGCCAATAAACCAGGACG 60.034 55.000 6.18 0.00 0.00 4.79
6888 11635 1.285078 AGAGGGCCAATAAACCAGGAC 59.715 52.381 6.18 0.00 0.00 3.85
6889 11636 1.681229 AGAGGGCCAATAAACCAGGA 58.319 50.000 6.18 0.00 0.00 3.86
6890 11637 2.532250 AAGAGGGCCAATAAACCAGG 57.468 50.000 6.18 0.00 0.00 4.45
6891 11638 4.236527 ACTAAGAGGGCCAATAAACCAG 57.763 45.455 6.18 0.00 0.00 4.00
6892 11639 5.987019 ATACTAAGAGGGCCAATAAACCA 57.013 39.130 6.18 0.00 0.00 3.67
6893 11640 7.123697 ACAAAATACTAAGAGGGCCAATAAACC 59.876 37.037 6.18 0.00 0.00 3.27
6894 11641 8.063200 ACAAAATACTAAGAGGGCCAATAAAC 57.937 34.615 6.18 0.00 0.00 2.01
6895 11642 9.756571 TTACAAAATACTAAGAGGGCCAATAAA 57.243 29.630 6.18 0.00 0.00 1.40
6896 11643 9.930158 ATTACAAAATACTAAGAGGGCCAATAA 57.070 29.630 6.18 0.00 0.00 1.40
6897 11644 9.569122 GATTACAAAATACTAAGAGGGCCAATA 57.431 33.333 6.18 0.00 0.00 1.90
6898 11645 8.058847 TGATTACAAAATACTAAGAGGGCCAAT 58.941 33.333 6.18 0.00 0.00 3.16
6899 11646 7.406916 TGATTACAAAATACTAAGAGGGCCAA 58.593 34.615 6.18 0.00 0.00 4.52
6900 11647 6.964464 TGATTACAAAATACTAAGAGGGCCA 58.036 36.000 6.18 0.00 0.00 5.36
6901 11648 7.875327 TTGATTACAAAATACTAAGAGGGCC 57.125 36.000 0.00 0.00 32.73 5.80
6957 11704 9.225436 TGATACTACTTTTTGTGACATGCATTA 57.775 29.630 0.00 0.00 0.00 1.90
6958 11705 8.109705 TGATACTACTTTTTGTGACATGCATT 57.890 30.769 0.00 0.00 0.00 3.56
6959 11706 7.686438 TGATACTACTTTTTGTGACATGCAT 57.314 32.000 0.00 0.00 0.00 3.96
6960 11707 7.686438 ATGATACTACTTTTTGTGACATGCA 57.314 32.000 0.00 0.00 0.00 3.96
6961 11708 8.236586 TCAATGATACTACTTTTTGTGACATGC 58.763 33.333 0.00 0.00 0.00 4.06
7068 11815 9.575783 GGTCTACTTTGTATTTTGTGTCAAAAA 57.424 29.630 10.84 0.00 33.76 1.94
7069 11816 8.740906 TGGTCTACTTTGTATTTTGTGTCAAAA 58.259 29.630 9.52 9.52 31.07 2.44
7070 11817 8.282455 TGGTCTACTTTGTATTTTGTGTCAAA 57.718 30.769 0.00 0.00 0.00 2.69
7071 11818 7.867305 TGGTCTACTTTGTATTTTGTGTCAA 57.133 32.000 0.00 0.00 0.00 3.18
7072 11819 7.867305 TTGGTCTACTTTGTATTTTGTGTCA 57.133 32.000 0.00 0.00 0.00 3.58
7079 11826 9.020731 CCTGGTTTATTGGTCTACTTTGTATTT 57.979 33.333 0.00 0.00 0.00 1.40
7080 11827 7.614192 CCCTGGTTTATTGGTCTACTTTGTATT 59.386 37.037 0.00 0.00 0.00 1.89
7081 11828 7.116736 CCCTGGTTTATTGGTCTACTTTGTAT 58.883 38.462 0.00 0.00 0.00 2.29
7082 11829 6.478129 CCCTGGTTTATTGGTCTACTTTGTA 58.522 40.000 0.00 0.00 0.00 2.41
7083 11830 5.321927 CCCTGGTTTATTGGTCTACTTTGT 58.678 41.667 0.00 0.00 0.00 2.83
7084 11831 4.157840 GCCCTGGTTTATTGGTCTACTTTG 59.842 45.833 0.00 0.00 0.00 2.77
7085 11832 4.341487 GCCCTGGTTTATTGGTCTACTTT 58.659 43.478 0.00 0.00 0.00 2.66
7086 11833 3.621461 CGCCCTGGTTTATTGGTCTACTT 60.621 47.826 0.00 0.00 0.00 2.24
7087 11834 2.093128 CGCCCTGGTTTATTGGTCTACT 60.093 50.000 0.00 0.00 0.00 2.57
7088 11835 2.285977 CGCCCTGGTTTATTGGTCTAC 58.714 52.381 0.00 0.00 0.00 2.59
7089 11836 1.210967 CCGCCCTGGTTTATTGGTCTA 59.789 52.381 0.00 0.00 0.00 2.59
7090 11837 0.034477 CCGCCCTGGTTTATTGGTCT 60.034 55.000 0.00 0.00 0.00 3.85
7091 11838 0.034863 TCCGCCCTGGTTTATTGGTC 60.035 55.000 0.00 0.00 39.52 4.02
7092 11839 0.034477 CTCCGCCCTGGTTTATTGGT 60.034 55.000 0.00 0.00 39.52 3.67
7093 11840 0.751643 CCTCCGCCCTGGTTTATTGG 60.752 60.000 0.00 0.00 39.52 3.16
7094 11841 0.034477 ACCTCCGCCCTGGTTTATTG 60.034 55.000 0.00 0.00 39.52 1.90
7095 11842 1.489230 CTACCTCCGCCCTGGTTTATT 59.511 52.381 0.00 0.00 39.52 1.40
7096 11843 1.129058 CTACCTCCGCCCTGGTTTAT 58.871 55.000 0.00 0.00 39.52 1.40
7097 11844 0.252375 ACTACCTCCGCCCTGGTTTA 60.252 55.000 0.00 0.00 39.52 2.01
7098 11845 0.252375 TACTACCTCCGCCCTGGTTT 60.252 55.000 0.00 0.00 39.52 3.27
7099 11846 0.686769 CTACTACCTCCGCCCTGGTT 60.687 60.000 0.00 0.00 39.52 3.67
7100 11847 1.076192 CTACTACCTCCGCCCTGGT 60.076 63.158 0.00 0.00 39.52 4.00
7101 11848 0.686769 AACTACTACCTCCGCCCTGG 60.687 60.000 0.00 0.00 40.09 4.45
7102 11849 2.062971 TAACTACTACCTCCGCCCTG 57.937 55.000 0.00 0.00 0.00 4.45
7103 11850 3.325359 AATAACTACTACCTCCGCCCT 57.675 47.619 0.00 0.00 0.00 5.19
7104 11851 4.148079 ACTAATAACTACTACCTCCGCCC 58.852 47.826 0.00 0.00 0.00 6.13
7105 11852 6.624642 GCATACTAATAACTACTACCTCCGCC 60.625 46.154 0.00 0.00 0.00 6.13
7106 11853 6.072286 TGCATACTAATAACTACTACCTCCGC 60.072 42.308 0.00 0.00 0.00 5.54
7107 11854 7.444629 TGCATACTAATAACTACTACCTCCG 57.555 40.000 0.00 0.00 0.00 4.63
7137 11884 8.755028 TGTTGTCCTGTTTATCTAGTATGCTAA 58.245 33.333 0.00 0.00 0.00 3.09
7151 11898 4.214310 TGTCCAATGATGTTGTCCTGTTT 58.786 39.130 0.00 0.00 0.00 2.83
7155 11902 2.756760 GCATGTCCAATGATGTTGTCCT 59.243 45.455 0.00 0.00 0.00 3.85
7157 11904 3.853831 TGCATGTCCAATGATGTTGTC 57.146 42.857 0.00 0.00 0.00 3.18
7160 11907 4.603989 TTGTTGCATGTCCAATGATGTT 57.396 36.364 0.00 0.00 0.00 2.71
7163 11910 7.114866 TGATATTTGTTGCATGTCCAATGAT 57.885 32.000 0.00 0.00 0.00 2.45
7164 11911 6.527057 TGATATTTGTTGCATGTCCAATGA 57.473 33.333 0.00 0.00 0.00 2.57
7165 11912 8.874744 TTATGATATTTGTTGCATGTCCAATG 57.125 30.769 0.00 0.00 0.00 2.82
7267 12044 0.033504 GTCACCAACCTCTGCTTCGA 59.966 55.000 0.00 0.00 0.00 3.71
7268 12045 0.249868 TGTCACCAACCTCTGCTTCG 60.250 55.000 0.00 0.00 0.00 3.79
7269 12046 1.967319 TTGTCACCAACCTCTGCTTC 58.033 50.000 0.00 0.00 0.00 3.86
7270 12047 2.233271 CATTGTCACCAACCTCTGCTT 58.767 47.619 0.00 0.00 32.26 3.91
7271 12048 1.546323 CCATTGTCACCAACCTCTGCT 60.546 52.381 0.00 0.00 32.26 4.24
7272 12049 0.883833 CCATTGTCACCAACCTCTGC 59.116 55.000 0.00 0.00 32.26 4.26
7273 12050 0.883833 GCCATTGTCACCAACCTCTG 59.116 55.000 0.00 0.00 32.26 3.35
7274 12051 0.251341 GGCCATTGTCACCAACCTCT 60.251 55.000 0.00 0.00 32.26 3.69
7275 12052 1.250840 GGGCCATTGTCACCAACCTC 61.251 60.000 4.39 0.00 32.26 3.85
7276 12053 1.228862 GGGCCATTGTCACCAACCT 60.229 57.895 4.39 0.00 32.26 3.50
7277 12054 1.228862 AGGGCCATTGTCACCAACC 60.229 57.895 6.18 0.00 32.26 3.77
7278 12055 1.966762 CAGGGCCATTGTCACCAAC 59.033 57.895 6.18 0.00 32.26 3.77
7279 12056 1.907807 GCAGGGCCATTGTCACCAA 60.908 57.895 6.18 0.00 34.45 3.67
7280 12057 2.283101 GCAGGGCCATTGTCACCA 60.283 61.111 6.18 0.00 0.00 4.17
7281 12058 3.443045 CGCAGGGCCATTGTCACC 61.443 66.667 6.18 0.00 0.00 4.02
7282 12059 2.672996 ACGCAGGGCCATTGTCAC 60.673 61.111 6.18 0.00 0.00 3.67
7283 12060 2.672651 CACGCAGGGCCATTGTCA 60.673 61.111 6.18 0.00 0.00 3.58
7284 12061 3.443045 CCACGCAGGGCCATTGTC 61.443 66.667 6.18 0.00 0.00 3.18
7297 12074 4.345962 TACCGTCACGCACCCACG 62.346 66.667 0.00 0.00 39.50 4.94
7298 12075 1.865788 TACTACCGTCACGCACCCAC 61.866 60.000 0.00 0.00 0.00 4.61
7299 12076 1.603171 TACTACCGTCACGCACCCA 60.603 57.895 0.00 0.00 0.00 4.51
7300 12077 1.153958 GTACTACCGTCACGCACCC 60.154 63.158 0.00 0.00 0.00 4.61
7301 12078 1.086696 TAGTACTACCGTCACGCACC 58.913 55.000 0.00 0.00 0.00 5.01
7302 12079 1.734465 AGTAGTACTACCGTCACGCAC 59.266 52.381 25.97 3.39 36.75 5.34
7303 12080 2.099141 AGTAGTACTACCGTCACGCA 57.901 50.000 25.97 0.00 36.75 5.24
7304 12081 3.166657 CAAAGTAGTACTACCGTCACGC 58.833 50.000 25.97 2.42 36.75 5.34
7305 12082 4.153986 CACAAAGTAGTACTACCGTCACG 58.846 47.826 25.97 13.16 36.75 4.35
7306 12083 3.916776 GCACAAAGTAGTACTACCGTCAC 59.083 47.826 25.97 12.99 36.75 3.67
7307 12084 3.569277 TGCACAAAGTAGTACTACCGTCA 59.431 43.478 25.97 17.07 36.75 4.35
7308 12085 4.164822 TGCACAAAGTAGTACTACCGTC 57.835 45.455 25.97 15.33 36.75 4.79
7309 12086 4.796038 ATGCACAAAGTAGTACTACCGT 57.204 40.909 25.97 18.58 36.75 4.83
7310 12087 6.146510 TGAAAATGCACAAAGTAGTACTACCG 59.853 38.462 25.97 18.01 36.75 4.02
7311 12088 7.429636 TGAAAATGCACAAAGTAGTACTACC 57.570 36.000 25.97 12.37 36.75 3.18
7312 12089 9.382244 CTTTGAAAATGCACAAAGTAGTACTAC 57.618 33.333 23.03 23.03 44.20 2.73
7367 12144 9.844257 AGAAATCATAAAATTGGTTTGGTTTGA 57.156 25.926 0.00 0.00 30.20 2.69
7387 12164 9.989869 GCCTTACTGTATCAAAAACTAGAAATC 57.010 33.333 0.00 0.00 0.00 2.17
7388 12165 9.740710 AGCCTTACTGTATCAAAAACTAGAAAT 57.259 29.630 0.00 0.00 0.00 2.17
7389 12166 9.569122 AAGCCTTACTGTATCAAAAACTAGAAA 57.431 29.630 0.00 0.00 0.00 2.52
7394 12171 9.515226 TGATTAAGCCTTACTGTATCAAAAACT 57.485 29.630 0.00 0.00 30.29 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.