Multiple sequence alignment - TraesCS1B01G091100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G091100 chr1B 100.000 4017 0 0 1 4017 92327955 92323939 0.000000e+00 7419.0
1 TraesCS1B01G091100 chr6B 95.213 2611 74 15 969 3549 711723787 711726376 0.000000e+00 4082.0
2 TraesCS1B01G091100 chr6B 92.565 1197 82 5 1377 2568 711655466 711654272 0.000000e+00 1711.0
3 TraesCS1B01G091100 chr6B 83.136 1773 259 25 1267 3024 710318939 710317192 0.000000e+00 1581.0
4 TraesCS1B01G091100 chr6B 82.636 1290 180 28 1268 2522 645653491 645654771 0.000000e+00 1101.0
5 TraesCS1B01G091100 chr6B 82.234 1289 188 25 1268 2522 646010185 646008904 0.000000e+00 1074.0
6 TraesCS1B01G091100 chr6B 81.475 1193 186 21 1360 2519 710222850 710224040 0.000000e+00 946.0
7 TraesCS1B01G091100 chr6B 90.676 547 49 1 2564 3108 711636617 711636071 0.000000e+00 726.0
8 TraesCS1B01G091100 chr6B 81.184 659 47 25 177 804 711708960 711709572 3.660000e-125 459.0
9 TraesCS1B01G091100 chr6B 78.571 602 57 31 210 804 711755082 711755618 8.320000e-87 331.0
10 TraesCS1B01G091100 chr6B 85.185 324 22 16 163 478 711876581 711876886 3.900000e-80 309.0
11 TraesCS1B01G091100 chr6B 83.162 291 32 14 439 724 710152275 710151997 2.400000e-62 250.0
12 TraesCS1B01G091100 chr6B 93.671 158 7 2 788 942 711723634 711723791 2.410000e-57 233.0
13 TraesCS1B01G091100 chr6B 95.270 148 3 1 3683 3826 711726523 711726670 8.680000e-57 231.0
14 TraesCS1B01G091100 chr6B 83.951 243 25 9 526 768 711238008 711237780 1.880000e-53 220.0
15 TraesCS1B01G091100 chr6B 81.004 279 47 4 2642 2916 615085612 615085336 2.430000e-52 217.0
16 TraesCS1B01G091100 chr6B 77.119 354 70 8 2635 2984 711738124 711737778 1.140000e-45 195.0
17 TraesCS1B01G091100 chr6B 91.729 133 5 3 672 804 710319567 710319441 3.190000e-41 180.0
18 TraesCS1B01G091100 chr6B 87.413 143 6 6 3518 3649 711726380 711726521 1.930000e-33 154.0
19 TraesCS1B01G091100 chr6B 87.879 132 11 4 799 925 711709611 711709742 2.500000e-32 150.0
20 TraesCS1B01G091100 chr6B 94.624 93 5 0 799 891 710643125 710643033 1.160000e-30 145.0
21 TraesCS1B01G091100 chr6B 93.878 49 3 0 747 795 711876955 711877003 1.550000e-09 75.0
22 TraesCS1B01G091100 chr6B 100.000 30 0 0 1270 1299 711660620 711660591 5.610000e-04 56.5
23 TraesCS1B01G091100 chr6A 94.767 2656 73 30 803 3430 613079103 613081720 0.000000e+00 4074.0
24 TraesCS1B01G091100 chr6A 90.293 886 81 4 2228 3108 612568152 612567267 0.000000e+00 1155.0
25 TraesCS1B01G091100 chr6A 82.700 1289 179 28 1268 2522 573636318 573637596 0.000000e+00 1105.0
26 TraesCS1B01G091100 chr6A 93.372 694 36 3 2710 3395 613038420 613039111 0.000000e+00 1018.0
27 TraesCS1B01G091100 chr6A 82.537 607 58 24 361 939 613093713 613094299 1.300000e-134 490.0
28 TraesCS1B01G091100 chr6A 84.597 409 11 15 3438 3820 613039237 613039619 3.820000e-95 359.0
29 TraesCS1B01G091100 chr6A 85.755 351 26 12 461 804 612299228 612299561 2.300000e-92 350.0
30 TraesCS1B01G091100 chr6A 85.321 327 27 7 168 492 613078416 613078723 6.480000e-83 318.0
31 TraesCS1B01G091100 chr6A 83.333 330 24 14 526 847 612578596 612578290 3.950000e-70 276.0
32 TraesCS1B01G091100 chr6A 83.274 281 22 19 526 805 612110067 612109811 6.710000e-58 235.0
33 TraesCS1B01G091100 chr6A 76.845 393 77 11 2599 2984 554833215 554832830 4.070000e-50 209.0
34 TraesCS1B01G091100 chr6A 95.833 120 5 0 3482 3601 613081729 613081848 1.140000e-45 195.0
35 TraesCS1B01G091100 chr6A 93.701 127 3 2 3706 3828 613081936 613082061 6.860000e-43 185.0
36 TraesCS1B01G091100 chr6A 91.453 117 8 2 205 319 613093514 613093630 4.160000e-35 159.0
37 TraesCS1B01G091100 chr6A 85.621 153 18 4 799 948 612109730 612109579 1.490000e-34 158.0
38 TraesCS1B01G091100 chr6A 91.954 87 7 0 799 885 125259531 125259617 5.450000e-24 122.0
39 TraesCS1B01G091100 chr6A 97.561 41 1 0 3613 3653 613081881 613081921 2.000000e-08 71.3
40 TraesCS1B01G091100 chr6A 97.436 39 1 0 320 358 613093695 613093733 2.590000e-07 67.6
41 TraesCS1B01G091100 chr6D 83.220 1770 262 22 1267 3024 465347838 465346092 0.000000e+00 1591.0
42 TraesCS1B01G091100 chr6D 82.713 1290 177 29 1268 2522 428960275 428961553 0.000000e+00 1105.0
43 TraesCS1B01G091100 chr6D 86.813 273 26 8 535 804 462838875 462839140 3.040000e-76 296.0
44 TraesCS1B01G091100 chr6D 90.777 206 18 1 168 372 466621260 466621465 1.420000e-69 274.0
45 TraesCS1B01G091100 chr6D 80.769 390 39 26 526 904 465967565 465967201 5.120000e-69 272.0
46 TraesCS1B01G091100 chr6D 85.714 259 16 3 549 804 465348596 465348356 1.850000e-63 254.0
47 TraesCS1B01G091100 chr6D 77.582 397 74 13 2599 2984 466525200 466525592 4.040000e-55 226.0
48 TraesCS1B01G091100 chr6D 94.565 92 5 0 799 890 465348317 465348226 4.180000e-30 143.0
49 TraesCS1B01G091100 chr6D 92.708 96 7 0 799 894 465745291 465745196 5.410000e-29 139.0
50 TraesCS1B01G091100 chr6D 94.828 58 3 0 737 794 462027979 462027922 1.540000e-14 91.6
51 TraesCS1B01G091100 chr6D 96.078 51 2 0 752 802 466328585 466328635 2.570000e-12 84.2
52 TraesCS1B01G091100 chr6D 95.122 41 1 1 3152 3192 294085201 294085162 3.350000e-06 63.9
53 TraesCS1B01G091100 chr3B 82.518 1247 182 27 1349 2571 197791856 197790622 0.000000e+00 1062.0
54 TraesCS1B01G091100 chr3B 82.437 279 28 9 526 804 197794854 197794597 1.450000e-54 224.0
55 TraesCS1B01G091100 chr3D 78.929 1139 177 38 1816 2928 464051502 464052603 0.000000e+00 715.0
56 TraesCS1B01G091100 chr3D 94.652 187 10 0 3831 4017 531685856 531685670 1.410000e-74 291.0
57 TraesCS1B01G091100 chr3D 93.194 191 11 2 3828 4017 419591364 419591553 3.060000e-71 279.0
58 TraesCS1B01G091100 chr3D 97.222 36 1 0 3152 3187 26227884 26227919 1.210000e-05 62.1
59 TraesCS1B01G091100 chr7D 95.135 185 9 0 3833 4017 232942899 232943083 3.930000e-75 292.0
60 TraesCS1B01G091100 chr5B 94.652 187 9 1 3832 4017 7071474 7071660 5.080000e-74 289.0
61 TraesCS1B01G091100 chr5B 96.262 107 4 0 1 107 59786320 59786426 4.130000e-40 176.0
62 TraesCS1B01G091100 chr5A 94.652 187 9 1 3832 4017 574930003 574930189 5.080000e-74 289.0
63 TraesCS1B01G091100 chr5A 93.548 124 6 2 3 125 635854427 635854549 2.470000e-42 183.0
64 TraesCS1B01G091100 chr5A 97.143 35 1 0 3153 3187 3387888 3387854 4.340000e-05 60.2
65 TraesCS1B01G091100 chr2D 94.149 188 9 2 3832 4017 186640899 186640712 6.570000e-73 285.0
66 TraesCS1B01G091100 chr2D 91.667 120 8 2 6 124 177320679 177320797 8.930000e-37 165.0
67 TraesCS1B01G091100 chr2D 100.000 33 0 0 3152 3184 567483533 567483501 1.210000e-05 62.1
68 TraesCS1B01G091100 chr5D 94.086 186 11 0 3832 4017 361187554 361187739 2.360000e-72 283.0
69 TraesCS1B01G091100 chr7A 93.229 192 11 2 3826 4017 474324189 474324378 8.500000e-72 281.0
70 TraesCS1B01G091100 chr4A 92.386 197 11 4 3823 4016 195390215 195390020 1.100000e-70 278.0
71 TraesCS1B01G091100 chr4A 83.871 186 23 5 534 719 594050352 594050174 1.920000e-38 171.0
72 TraesCS1B01G091100 chr4B 92.913 127 7 2 1 126 166848371 166848496 2.470000e-42 183.0
73 TraesCS1B01G091100 chr2B 92.366 131 4 2 1 125 629159860 629159730 8.870000e-42 182.0
74 TraesCS1B01G091100 chr2B 100.000 32 0 0 3153 3184 680200121 680200090 4.340000e-05 60.2
75 TraesCS1B01G091100 chr2A 90.984 122 8 2 3 124 742326383 742326501 1.160000e-35 161.0
76 TraesCS1B01G091100 chr7B 100.000 84 0 0 1 84 64408711 64408794 5.380000e-34 156.0
77 TraesCS1B01G091100 chr1D 92.063 63 5 0 725 787 447556839 447556901 5.530000e-14 89.8
78 TraesCS1B01G091100 chrUn 74.457 184 30 11 2657 2827 33026942 33026763 3.350000e-06 63.9
79 TraesCS1B01G091100 chr3A 100.000 32 0 0 3152 3183 581251798 581251767 4.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G091100 chr1B 92323939 92327955 4016 True 7419.000000 7419 100.000000 1 4017 1 chr1B.!!$R1 4016
1 TraesCS1B01G091100 chr6B 711654272 711655466 1194 True 1711.000000 1711 92.565000 1377 2568 1 chr6B.!!$R7 1191
2 TraesCS1B01G091100 chr6B 711723634 711726670 3036 False 1175.000000 4082 92.891750 788 3826 4 chr6B.!!$F5 3038
3 TraesCS1B01G091100 chr6B 645653491 645654771 1280 False 1101.000000 1101 82.636000 1268 2522 1 chr6B.!!$F1 1254
4 TraesCS1B01G091100 chr6B 646008904 646010185 1281 True 1074.000000 1074 82.234000 1268 2522 1 chr6B.!!$R2 1254
5 TraesCS1B01G091100 chr6B 710222850 710224040 1190 False 946.000000 946 81.475000 1360 2519 1 chr6B.!!$F2 1159
6 TraesCS1B01G091100 chr6B 710317192 710319567 2375 True 880.500000 1581 87.432500 672 3024 2 chr6B.!!$R10 2352
7 TraesCS1B01G091100 chr6B 711636071 711636617 546 True 726.000000 726 90.676000 2564 3108 1 chr6B.!!$R6 544
8 TraesCS1B01G091100 chr6B 711755082 711755618 536 False 331.000000 331 78.571000 210 804 1 chr6B.!!$F3 594
9 TraesCS1B01G091100 chr6B 711708960 711709742 782 False 304.500000 459 84.531500 177 925 2 chr6B.!!$F4 748
10 TraesCS1B01G091100 chr6A 612567267 612568152 885 True 1155.000000 1155 90.293000 2228 3108 1 chr6A.!!$R2 880
11 TraesCS1B01G091100 chr6A 573636318 573637596 1278 False 1105.000000 1105 82.700000 1268 2522 1 chr6A.!!$F2 1254
12 TraesCS1B01G091100 chr6A 613078416 613082061 3645 False 968.660000 4074 93.436600 168 3828 5 chr6A.!!$F5 3660
13 TraesCS1B01G091100 chr6A 613038420 613039619 1199 False 688.500000 1018 88.984500 2710 3820 2 chr6A.!!$F4 1110
14 TraesCS1B01G091100 chr6A 613093514 613094299 785 False 238.866667 490 90.475333 205 939 3 chr6A.!!$F6 734
15 TraesCS1B01G091100 chr6D 428960275 428961553 1278 False 1105.000000 1105 82.713000 1268 2522 1 chr6D.!!$F1 1254
16 TraesCS1B01G091100 chr6D 465346092 465348596 2504 True 662.666667 1591 87.833000 549 3024 3 chr6D.!!$R5 2475
17 TraesCS1B01G091100 chr3B 197790622 197794854 4232 True 643.000000 1062 82.477500 526 2571 2 chr3B.!!$R1 2045
18 TraesCS1B01G091100 chr3D 464051502 464052603 1101 False 715.000000 715 78.929000 1816 2928 1 chr3D.!!$F3 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.108424 GCCATTCGCTCACTCACTCT 60.108 55.0 0.00 0.0 0.0 3.24 F
152 153 0.108992 GATGTGTCTCCCGCGTGTTA 60.109 55.0 4.92 0.0 0.0 2.41 F
1032 1278 0.036294 CGTCCTCCTGTTCCTTTCCC 60.036 60.0 0.00 0.0 0.0 3.97 F
1034 1280 0.196118 TCCTCCTGTTCCTTTCCCCT 59.804 55.0 0.00 0.0 0.0 4.79 F
2402 5052 0.251341 AACCAGAAGGCCGAAAGCAT 60.251 50.0 0.00 0.0 46.5 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 1243 0.036294 GGAAAGGAACAGGAGGACGG 60.036 60.000 0.00 0.0 0.00 4.79 R
1536 4145 0.472471 TGGGCTCAAAAGAACCGACT 59.528 50.000 0.00 0.0 0.00 4.18 R
2402 5052 0.463295 TGCGGAACACCGGTAACAAA 60.463 50.000 6.87 0.0 45.94 2.83 R
3002 5678 1.371183 CCTGTCAACTCGGGAAGCA 59.629 57.895 0.00 0.0 36.02 3.91 R
3840 6691 0.178301 GACTCCTTCCCCGGTGATTC 59.822 60.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.060000 GTCCCCCTTTTTCCGGCG 61.060 66.667 0.00 0.00 0.00 6.46
18 19 4.354162 TCCCCCTTTTTCCGGCGG 62.354 66.667 22.51 22.51 0.00 6.13
20 21 4.354162 CCCCTTTTTCCGGCGGGA 62.354 66.667 27.98 16.80 41.83 5.14
21 22 3.060000 CCCTTTTTCCGGCGGGAC 61.060 66.667 27.98 0.00 43.74 4.46
22 23 3.060000 CCTTTTTCCGGCGGGACC 61.060 66.667 27.98 0.00 43.74 4.46
49 50 4.838152 GAGGCCGCCATTCGCTCA 62.838 66.667 13.15 0.00 36.73 4.26
52 53 3.567797 GCCGCCATTCGCTCACTC 61.568 66.667 0.00 0.00 36.73 3.51
53 54 2.125552 CCGCCATTCGCTCACTCA 60.126 61.111 0.00 0.00 36.73 3.41
54 55 2.456119 CCGCCATTCGCTCACTCAC 61.456 63.158 0.00 0.00 36.73 3.51
55 56 1.446792 CGCCATTCGCTCACTCACT 60.447 57.895 0.00 0.00 34.21 3.41
56 57 1.416813 CGCCATTCGCTCACTCACTC 61.417 60.000 0.00 0.00 34.21 3.51
57 58 0.108424 GCCATTCGCTCACTCACTCT 60.108 55.000 0.00 0.00 0.00 3.24
58 59 1.638133 CCATTCGCTCACTCACTCTG 58.362 55.000 0.00 0.00 0.00 3.35
59 60 1.638133 CATTCGCTCACTCACTCTGG 58.362 55.000 0.00 0.00 0.00 3.86
60 61 1.203287 CATTCGCTCACTCACTCTGGA 59.797 52.381 0.00 0.00 0.00 3.86
61 62 1.550327 TTCGCTCACTCACTCTGGAT 58.450 50.000 0.00 0.00 0.00 3.41
62 63 1.098869 TCGCTCACTCACTCTGGATC 58.901 55.000 0.00 0.00 0.00 3.36
63 64 1.102154 CGCTCACTCACTCTGGATCT 58.898 55.000 0.00 0.00 0.00 2.75
64 65 1.065401 CGCTCACTCACTCTGGATCTC 59.935 57.143 0.00 0.00 0.00 2.75
65 66 1.408702 GCTCACTCACTCTGGATCTCC 59.591 57.143 0.00 0.00 0.00 3.71
66 67 1.675483 CTCACTCACTCTGGATCTCCG 59.325 57.143 0.00 0.00 39.43 4.63
67 68 1.004862 TCACTCACTCTGGATCTCCGT 59.995 52.381 0.00 0.00 39.43 4.69
68 69 1.403679 CACTCACTCTGGATCTCCGTC 59.596 57.143 0.00 0.00 39.43 4.79
69 70 0.660488 CTCACTCTGGATCTCCGTCG 59.340 60.000 0.00 0.00 39.43 5.12
70 71 1.064946 CACTCTGGATCTCCGTCGC 59.935 63.158 0.00 0.00 39.43 5.19
71 72 2.122167 ACTCTGGATCTCCGTCGCC 61.122 63.158 0.00 0.00 39.43 5.54
72 73 3.187699 CTCTGGATCTCCGTCGCCG 62.188 68.421 0.00 0.00 39.43 6.46
73 74 4.933064 CTGGATCTCCGTCGCCGC 62.933 72.222 0.00 0.00 39.43 6.53
76 77 4.933064 GATCTCCGTCGCCGCCAG 62.933 72.222 0.00 0.00 0.00 4.85
79 80 4.933064 CTCCGTCGCCGCCAGATC 62.933 72.222 0.00 0.00 0.00 2.75
111 112 2.439245 GGGAGCCCCCGAGTTTTT 59.561 61.111 0.00 0.00 44.02 1.94
134 135 5.923733 TTTTTGCAAAGTTGACTTAGGGA 57.076 34.783 12.41 0.00 34.61 4.20
135 136 6.478512 TTTTTGCAAAGTTGACTTAGGGAT 57.521 33.333 12.41 0.00 34.61 3.85
136 137 5.452078 TTTGCAAAGTTGACTTAGGGATG 57.548 39.130 8.05 0.00 34.61 3.51
137 138 4.098914 TGCAAAGTTGACTTAGGGATGT 57.901 40.909 0.00 0.00 34.61 3.06
138 139 3.820467 TGCAAAGTTGACTTAGGGATGTG 59.180 43.478 0.00 0.00 34.61 3.21
139 140 3.821033 GCAAAGTTGACTTAGGGATGTGT 59.179 43.478 0.00 0.00 34.61 3.72
140 141 4.083271 GCAAAGTTGACTTAGGGATGTGTC 60.083 45.833 0.00 0.00 34.61 3.67
141 142 5.308825 CAAAGTTGACTTAGGGATGTGTCT 58.691 41.667 0.00 0.00 34.61 3.41
142 143 4.810191 AGTTGACTTAGGGATGTGTCTC 57.190 45.455 0.00 0.00 0.00 3.36
143 144 3.515901 AGTTGACTTAGGGATGTGTCTCC 59.484 47.826 0.00 0.00 34.31 3.71
144 145 8.435233 AAAGTTGACTTAGGGATGTGTCTCCC 62.435 46.154 0.63 0.63 44.36 4.30
148 149 3.771160 GGGATGTGTCTCCCGCGT 61.771 66.667 4.92 0.00 45.41 6.01
149 150 2.509336 GGATGTGTCTCCCGCGTG 60.509 66.667 4.92 0.00 0.00 5.34
150 151 2.261671 GATGTGTCTCCCGCGTGT 59.738 61.111 4.92 0.00 0.00 4.49
151 152 1.374252 GATGTGTCTCCCGCGTGTT 60.374 57.895 4.92 0.00 0.00 3.32
152 153 0.108992 GATGTGTCTCCCGCGTGTTA 60.109 55.000 4.92 0.00 0.00 2.41
153 154 0.535335 ATGTGTCTCCCGCGTGTTAT 59.465 50.000 4.92 0.00 0.00 1.89
154 155 1.175654 TGTGTCTCCCGCGTGTTATA 58.824 50.000 4.92 0.00 0.00 0.98
155 156 1.135315 TGTGTCTCCCGCGTGTTATAC 60.135 52.381 4.92 0.00 0.00 1.47
156 157 0.457035 TGTCTCCCGCGTGTTATACC 59.543 55.000 4.92 0.00 0.00 2.73
157 158 0.457035 GTCTCCCGCGTGTTATACCA 59.543 55.000 4.92 0.00 0.00 3.25
158 159 1.068127 GTCTCCCGCGTGTTATACCAT 59.932 52.381 4.92 0.00 0.00 3.55
159 160 2.294233 GTCTCCCGCGTGTTATACCATA 59.706 50.000 4.92 0.00 0.00 2.74
160 161 2.957680 TCTCCCGCGTGTTATACCATAA 59.042 45.455 4.92 0.00 0.00 1.90
161 162 3.005050 TCTCCCGCGTGTTATACCATAAG 59.995 47.826 4.92 0.00 0.00 1.73
162 163 2.694628 TCCCGCGTGTTATACCATAAGT 59.305 45.455 4.92 0.00 0.00 2.24
163 164 3.132646 TCCCGCGTGTTATACCATAAGTT 59.867 43.478 4.92 0.00 0.00 2.66
164 165 3.246699 CCCGCGTGTTATACCATAAGTTG 59.753 47.826 4.92 0.00 0.00 3.16
165 166 3.866910 CCGCGTGTTATACCATAAGTTGT 59.133 43.478 4.92 0.00 0.00 3.32
166 167 4.330620 CCGCGTGTTATACCATAAGTTGTT 59.669 41.667 4.92 0.00 0.00 2.83
201 202 3.721035 CTTTGTGCAAAGGCTAGCTTTT 58.279 40.909 18.29 18.29 42.96 2.27
239 240 3.322254 AGTCTTGTCAGGTCGATGTCTTT 59.678 43.478 0.00 0.00 0.00 2.52
492 593 1.749063 CATCGCAGGCCTCGGTATATA 59.251 52.381 19.88 4.85 0.00 0.86
495 596 1.403780 CGCAGGCCTCGGTATATAACC 60.404 57.143 0.00 0.00 45.77 2.85
539 674 2.155279 GTTTCCTTCCACCAAGAGAGC 58.845 52.381 0.00 0.00 33.29 4.09
871 1095 2.261361 GTTTCCATTGGTGGCGGC 59.739 61.111 0.00 0.00 45.63 6.53
906 1136 1.136828 TATAAATCTGGCCTGGCGGT 58.863 50.000 13.40 0.00 0.00 5.68
986 1216 4.899239 CCAGATCGGCCTCGGCAC 62.899 72.222 10.51 0.00 44.11 5.01
1030 1276 0.974383 TCCGTCCTCCTGTTCCTTTC 59.026 55.000 0.00 0.00 0.00 2.62
1032 1278 0.036294 CGTCCTCCTGTTCCTTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
1033 1279 0.328592 GTCCTCCTGTTCCTTTCCCC 59.671 60.000 0.00 0.00 0.00 4.81
1034 1280 0.196118 TCCTCCTGTTCCTTTCCCCT 59.804 55.000 0.00 0.00 0.00 4.79
1038 1284 1.423921 TCCTGTTCCTTTCCCCTTGTC 59.576 52.381 0.00 0.00 0.00 3.18
1136 3591 9.883142 TTCATGGTCAAAATTTAACTTTTCTGT 57.117 25.926 0.87 0.00 0.00 3.41
1207 3662 5.250200 TCCAACACTGTGGGTAATTACATC 58.750 41.667 17.16 9.15 39.34 3.06
1208 3663 4.398044 CCAACACTGTGGGTAATTACATCC 59.602 45.833 17.16 10.40 34.77 3.51
1210 3665 5.514500 ACACTGTGGGTAATTACATCCTT 57.486 39.130 17.16 0.00 0.00 3.36
1211 3666 5.887754 ACACTGTGGGTAATTACATCCTTT 58.112 37.500 17.16 0.00 0.00 3.11
1212 3667 6.311735 ACACTGTGGGTAATTACATCCTTTT 58.688 36.000 17.16 0.00 0.00 2.27
1213 3668 6.208599 ACACTGTGGGTAATTACATCCTTTTG 59.791 38.462 17.16 7.97 0.00 2.44
1214 3669 6.208599 CACTGTGGGTAATTACATCCTTTTGT 59.791 38.462 17.16 5.99 0.00 2.83
1215 3670 6.208599 ACTGTGGGTAATTACATCCTTTTGTG 59.791 38.462 17.16 3.03 0.00 3.33
1217 3672 5.020132 TGGGTAATTACATCCTTTTGTGGG 58.980 41.667 17.16 0.00 0.00 4.61
1220 3675 6.664384 GGGTAATTACATCCTTTTGTGGGTAA 59.336 38.462 17.16 0.00 0.00 2.85
1221 3676 7.343574 GGGTAATTACATCCTTTTGTGGGTAAT 59.656 37.037 17.16 0.00 34.05 1.89
1222 3677 8.755028 GGTAATTACATCCTTTTGTGGGTAATT 58.245 33.333 17.16 0.00 41.55 1.40
1225 3680 8.887264 ATTACATCCTTTTGTGGGTAATTACA 57.113 30.769 17.16 0.00 29.78 2.41
1558 4167 0.598065 CGGTTCTTTTGAGCCCAAGG 59.402 55.000 0.00 0.00 45.63 3.61
1817 4432 3.064207 GTTACGTTGATGACCTGCTCAA 58.936 45.455 0.00 0.00 30.60 3.02
2330 4976 5.876460 TGTCATGGAGATGTTGTAGTCATTG 59.124 40.000 0.00 0.00 0.00 2.82
2402 5052 0.251341 AACCAGAAGGCCGAAAGCAT 60.251 50.000 0.00 0.00 46.50 3.79
2463 5113 4.037327 TGTTCAACATTTCCGAAGAATGCA 59.963 37.500 0.00 0.00 0.00 3.96
2562 5215 3.810310 ACCGGTTCTTCATCTCTCATC 57.190 47.619 0.00 0.00 0.00 2.92
3002 5678 2.379972 TGTCGTCAAATGTTGGGGTTT 58.620 42.857 0.00 0.00 0.00 3.27
3436 6225 4.590850 AAAATTGACCAAGTTGAGCCTC 57.409 40.909 3.87 0.00 0.00 4.70
3549 6373 9.914131 CGTATAGAGAAGATTTATCCATTGTGA 57.086 33.333 0.00 0.00 0.00 3.58
3601 6425 1.628846 AGGGTATTGTCGTGGAGCTTT 59.371 47.619 0.00 0.00 0.00 3.51
3602 6426 2.039879 AGGGTATTGTCGTGGAGCTTTT 59.960 45.455 0.00 0.00 0.00 2.27
3604 6428 3.373130 GGGTATTGTCGTGGAGCTTTTAC 59.627 47.826 0.00 0.00 0.00 2.01
3606 6430 1.504359 TTGTCGTGGAGCTTTTACGG 58.496 50.000 15.22 1.83 38.29 4.02
3608 6432 1.068895 TGTCGTGGAGCTTTTACGGAA 59.931 47.619 15.22 4.85 38.29 4.30
3609 6433 2.137523 GTCGTGGAGCTTTTACGGAAA 58.862 47.619 15.22 0.00 38.29 3.13
3610 6434 2.740447 GTCGTGGAGCTTTTACGGAAAT 59.260 45.455 15.22 0.00 38.29 2.17
3611 6435 2.997986 TCGTGGAGCTTTTACGGAAATC 59.002 45.455 15.22 0.00 38.29 2.17
3653 6499 8.641498 AAAATGGAGAACTAGATGTTGACATT 57.359 30.769 0.00 0.00 39.30 2.71
3654 6500 9.739276 AAAATGGAGAACTAGATGTTGACATTA 57.261 29.630 0.00 0.00 39.30 1.90
3655 6501 9.911788 AAATGGAGAACTAGATGTTGACATTAT 57.088 29.630 0.00 0.00 39.30 1.28
3656 6502 8.899427 ATGGAGAACTAGATGTTGACATTATG 57.101 34.615 0.00 0.00 39.30 1.90
3657 6503 8.078060 TGGAGAACTAGATGTTGACATTATGA 57.922 34.615 0.00 0.00 39.30 2.15
3658 6504 7.981789 TGGAGAACTAGATGTTGACATTATGAC 59.018 37.037 0.00 0.00 39.30 3.06
3659 6505 7.981789 GGAGAACTAGATGTTGACATTATGACA 59.018 37.037 0.00 0.00 39.30 3.58
3660 6506 9.539825 GAGAACTAGATGTTGACATTATGACAT 57.460 33.333 0.00 0.00 39.30 3.06
3828 6679 1.552337 TGAAGCACCATGGTCTCTCTC 59.448 52.381 16.53 14.21 0.00 3.20
3829 6680 1.830477 GAAGCACCATGGTCTCTCTCT 59.170 52.381 16.53 2.53 0.00 3.10
3830 6681 1.484038 AGCACCATGGTCTCTCTCTC 58.516 55.000 16.53 0.00 0.00 3.20
3831 6682 1.006998 AGCACCATGGTCTCTCTCTCT 59.993 52.381 16.53 0.00 0.00 3.10
3832 6683 1.830477 GCACCATGGTCTCTCTCTCTT 59.170 52.381 16.53 0.00 0.00 2.85
3833 6684 2.235898 GCACCATGGTCTCTCTCTCTTT 59.764 50.000 16.53 0.00 0.00 2.52
3834 6685 3.307339 GCACCATGGTCTCTCTCTCTTTT 60.307 47.826 16.53 0.00 0.00 2.27
3835 6686 4.805609 GCACCATGGTCTCTCTCTCTTTTT 60.806 45.833 16.53 0.00 0.00 1.94
3855 6706 3.359695 TTTTAGAATCACCGGGGAAGG 57.640 47.619 12.35 0.00 37.30 3.46
3856 6707 2.257391 TTAGAATCACCGGGGAAGGA 57.743 50.000 12.35 0.00 34.73 3.36
3857 6708 1.789523 TAGAATCACCGGGGAAGGAG 58.210 55.000 12.35 0.00 34.73 3.69
3858 6709 0.252742 AGAATCACCGGGGAAGGAGT 60.253 55.000 12.35 0.00 34.73 3.85
3859 6710 0.178301 GAATCACCGGGGAAGGAGTC 59.822 60.000 12.35 2.07 34.73 3.36
3878 6729 5.799213 GAGTCCCTCCACCTGAATATATTG 58.201 45.833 1.78 0.00 0.00 1.90
3879 6730 4.042187 AGTCCCTCCACCTGAATATATTGC 59.958 45.833 1.78 0.00 0.00 3.56
3880 6731 4.042187 GTCCCTCCACCTGAATATATTGCT 59.958 45.833 1.78 0.00 0.00 3.91
3881 6732 4.287067 TCCCTCCACCTGAATATATTGCTC 59.713 45.833 1.78 0.00 0.00 4.26
3882 6733 4.042062 CCCTCCACCTGAATATATTGCTCA 59.958 45.833 1.78 0.00 0.00 4.26
3883 6734 5.456619 CCCTCCACCTGAATATATTGCTCAA 60.457 44.000 1.78 0.00 0.00 3.02
3884 6735 6.064060 CCTCCACCTGAATATATTGCTCAAA 58.936 40.000 1.78 0.00 0.00 2.69
3885 6736 6.206243 CCTCCACCTGAATATATTGCTCAAAG 59.794 42.308 1.78 0.00 0.00 2.77
3886 6737 6.662755 TCCACCTGAATATATTGCTCAAAGT 58.337 36.000 1.78 0.00 0.00 2.66
3887 6738 6.543465 TCCACCTGAATATATTGCTCAAAGTG 59.457 38.462 1.78 5.90 0.00 3.16
3888 6739 6.543465 CCACCTGAATATATTGCTCAAAGTGA 59.457 38.462 1.78 0.00 30.49 3.41
3889 6740 7.412853 CACCTGAATATATTGCTCAAAGTGAC 58.587 38.462 1.78 0.00 30.49 3.67
3890 6741 6.543831 ACCTGAATATATTGCTCAAAGTGACC 59.456 38.462 1.78 0.00 0.00 4.02
3891 6742 6.543465 CCTGAATATATTGCTCAAAGTGACCA 59.457 38.462 1.78 0.00 0.00 4.02
3892 6743 7.230108 CCTGAATATATTGCTCAAAGTGACCAT 59.770 37.037 1.78 0.00 0.00 3.55
3893 6744 9.276590 CTGAATATATTGCTCAAAGTGACCATA 57.723 33.333 1.78 0.00 0.00 2.74
3894 6745 9.625747 TGAATATATTGCTCAAAGTGACCATAA 57.374 29.630 1.78 0.00 0.00 1.90
3897 6748 4.439305 TTGCTCAAAGTGACCATAATGC 57.561 40.909 0.00 0.00 0.00 3.56
3898 6749 2.754552 TGCTCAAAGTGACCATAATGCC 59.245 45.455 0.00 0.00 0.00 4.40
3899 6750 2.754552 GCTCAAAGTGACCATAATGCCA 59.245 45.455 0.00 0.00 0.00 4.92
3900 6751 3.181493 GCTCAAAGTGACCATAATGCCAG 60.181 47.826 0.00 0.00 0.00 4.85
3901 6752 4.264253 CTCAAAGTGACCATAATGCCAGA 58.736 43.478 0.00 0.00 0.00 3.86
3902 6753 4.661222 TCAAAGTGACCATAATGCCAGAA 58.339 39.130 0.00 0.00 0.00 3.02
3903 6754 4.701651 TCAAAGTGACCATAATGCCAGAAG 59.298 41.667 0.00 0.00 0.00 2.85
3904 6755 4.574674 AAGTGACCATAATGCCAGAAGA 57.425 40.909 0.00 0.00 0.00 2.87
3905 6756 4.148128 AGTGACCATAATGCCAGAAGAG 57.852 45.455 0.00 0.00 0.00 2.85
3906 6757 3.521126 AGTGACCATAATGCCAGAAGAGT 59.479 43.478 0.00 0.00 0.00 3.24
3907 6758 3.624861 GTGACCATAATGCCAGAAGAGTG 59.375 47.826 0.00 0.00 0.00 3.51
3908 6759 3.519107 TGACCATAATGCCAGAAGAGTGA 59.481 43.478 0.00 0.00 0.00 3.41
3909 6760 4.164796 TGACCATAATGCCAGAAGAGTGAT 59.835 41.667 0.00 0.00 0.00 3.06
3910 6761 4.712476 ACCATAATGCCAGAAGAGTGATC 58.288 43.478 0.00 0.00 0.00 2.92
3911 6762 4.070716 CCATAATGCCAGAAGAGTGATCC 58.929 47.826 0.00 0.00 0.00 3.36
3912 6763 4.445305 CCATAATGCCAGAAGAGTGATCCA 60.445 45.833 0.00 0.00 0.00 3.41
3913 6764 3.278668 AATGCCAGAAGAGTGATCCAG 57.721 47.619 0.00 0.00 0.00 3.86
3914 6765 1.649321 TGCCAGAAGAGTGATCCAGT 58.351 50.000 0.00 0.00 0.00 4.00
3915 6766 1.980765 TGCCAGAAGAGTGATCCAGTT 59.019 47.619 0.00 0.00 0.00 3.16
3916 6767 2.373169 TGCCAGAAGAGTGATCCAGTTT 59.627 45.455 0.00 0.00 0.00 2.66
3917 6768 3.582647 TGCCAGAAGAGTGATCCAGTTTA 59.417 43.478 0.00 0.00 0.00 2.01
3918 6769 4.225942 TGCCAGAAGAGTGATCCAGTTTAT 59.774 41.667 0.00 0.00 0.00 1.40
3919 6770 5.425217 TGCCAGAAGAGTGATCCAGTTTATA 59.575 40.000 0.00 0.00 0.00 0.98
3920 6771 6.070251 TGCCAGAAGAGTGATCCAGTTTATAA 60.070 38.462 0.00 0.00 0.00 0.98
3921 6772 6.823689 GCCAGAAGAGTGATCCAGTTTATAAA 59.176 38.462 0.00 0.00 0.00 1.40
3922 6773 7.011857 GCCAGAAGAGTGATCCAGTTTATAAAG 59.988 40.741 0.00 0.00 0.00 1.85
3923 6774 8.260818 CCAGAAGAGTGATCCAGTTTATAAAGA 58.739 37.037 0.00 0.00 0.00 2.52
3924 6775 9.658799 CAGAAGAGTGATCCAGTTTATAAAGAA 57.341 33.333 0.00 0.00 0.00 2.52
3928 6779 9.232473 AGAGTGATCCAGTTTATAAAGAAAACC 57.768 33.333 0.00 0.00 37.51 3.27
3929 6780 8.040716 AGTGATCCAGTTTATAAAGAAAACCG 57.959 34.615 0.00 0.00 37.51 4.44
3930 6781 7.120726 AGTGATCCAGTTTATAAAGAAAACCGG 59.879 37.037 0.00 0.00 37.51 5.28
3931 6782 7.120138 GTGATCCAGTTTATAAAGAAAACCGGA 59.880 37.037 9.46 6.21 43.81 5.14
3933 6784 7.619964 TCCAGTTTATAAAGAAAACCGGATC 57.380 36.000 9.46 3.11 38.09 3.36
3934 6785 6.314400 TCCAGTTTATAAAGAAAACCGGATCG 59.686 38.462 9.46 0.00 38.09 3.69
3935 6786 6.314400 CCAGTTTATAAAGAAAACCGGATCGA 59.686 38.462 9.46 0.00 36.79 3.59
3936 6787 7.148373 CCAGTTTATAAAGAAAACCGGATCGAA 60.148 37.037 9.46 0.00 36.79 3.71
3937 6788 8.231837 CAGTTTATAAAGAAAACCGGATCGAAA 58.768 33.333 9.46 0.16 37.51 3.46
3938 6789 8.785946 AGTTTATAAAGAAAACCGGATCGAAAA 58.214 29.630 9.46 0.70 37.51 2.29
3939 6790 8.843733 GTTTATAAAGAAAACCGGATCGAAAAC 58.156 33.333 9.46 8.47 31.94 2.43
3940 6791 3.909776 AAGAAAACCGGATCGAAAACC 57.090 42.857 9.46 0.00 0.00 3.27
3941 6792 3.136009 AGAAAACCGGATCGAAAACCT 57.864 42.857 9.46 0.00 0.00 3.50
3942 6793 3.483421 AGAAAACCGGATCGAAAACCTT 58.517 40.909 9.46 0.00 0.00 3.50
3943 6794 4.644498 AGAAAACCGGATCGAAAACCTTA 58.356 39.130 9.46 0.00 0.00 2.69
3944 6795 5.065235 AGAAAACCGGATCGAAAACCTTAA 58.935 37.500 9.46 0.00 0.00 1.85
3945 6796 4.754372 AAACCGGATCGAAAACCTTAAC 57.246 40.909 9.46 0.00 0.00 2.01
3946 6797 3.405823 ACCGGATCGAAAACCTTAACA 57.594 42.857 9.46 0.00 0.00 2.41
3947 6798 3.742385 ACCGGATCGAAAACCTTAACAA 58.258 40.909 9.46 0.00 0.00 2.83
3948 6799 4.136051 ACCGGATCGAAAACCTTAACAAA 58.864 39.130 9.46 0.00 0.00 2.83
3949 6800 4.763279 ACCGGATCGAAAACCTTAACAAAT 59.237 37.500 9.46 0.00 0.00 2.32
3950 6801 5.242171 ACCGGATCGAAAACCTTAACAAATT 59.758 36.000 9.46 0.00 0.00 1.82
3951 6802 5.571357 CCGGATCGAAAACCTTAACAAATTG 59.429 40.000 0.00 0.00 0.00 2.32
3952 6803 6.375377 CGGATCGAAAACCTTAACAAATTGA 58.625 36.000 0.00 0.00 0.00 2.57
3953 6804 6.304683 CGGATCGAAAACCTTAACAAATTGAC 59.695 38.462 0.00 0.00 0.00 3.18
3954 6805 6.584942 GGATCGAAAACCTTAACAAATTGACC 59.415 38.462 0.00 0.00 0.00 4.02
3955 6806 5.834169 TCGAAAACCTTAACAAATTGACCC 58.166 37.500 0.00 0.00 0.00 4.46
3956 6807 4.986034 CGAAAACCTTAACAAATTGACCCC 59.014 41.667 0.00 0.00 0.00 4.95
3957 6808 4.594123 AAACCTTAACAAATTGACCCCG 57.406 40.909 0.00 0.00 0.00 5.73
3958 6809 3.232720 ACCTTAACAAATTGACCCCGT 57.767 42.857 0.00 0.00 0.00 5.28
3959 6810 3.568443 ACCTTAACAAATTGACCCCGTT 58.432 40.909 0.00 0.00 0.00 4.44
3960 6811 3.962063 ACCTTAACAAATTGACCCCGTTT 59.038 39.130 0.00 0.00 0.00 3.60
3961 6812 5.139001 ACCTTAACAAATTGACCCCGTTTA 58.861 37.500 0.00 0.00 0.00 2.01
3962 6813 5.009911 ACCTTAACAAATTGACCCCGTTTAC 59.990 40.000 0.00 0.00 0.00 2.01
3963 6814 3.629438 AACAAATTGACCCCGTTTACG 57.371 42.857 0.00 0.00 39.44 3.18
3964 6815 2.848691 ACAAATTGACCCCGTTTACGA 58.151 42.857 0.00 0.00 43.02 3.43
3965 6816 2.809696 ACAAATTGACCCCGTTTACGAG 59.190 45.455 0.00 0.00 43.02 4.18
3966 6817 2.103537 AATTGACCCCGTTTACGAGG 57.896 50.000 3.46 2.17 43.32 4.63
3967 6818 1.269012 ATTGACCCCGTTTACGAGGA 58.731 50.000 9.90 0.00 39.83 3.71
3968 6819 1.047002 TTGACCCCGTTTACGAGGAA 58.953 50.000 9.90 0.00 39.83 3.36
3969 6820 1.047002 TGACCCCGTTTACGAGGAAA 58.953 50.000 9.90 0.00 39.83 3.13
3970 6821 1.415659 TGACCCCGTTTACGAGGAAAA 59.584 47.619 9.90 0.00 39.83 2.29
3971 6822 1.800586 GACCCCGTTTACGAGGAAAAC 59.199 52.381 9.90 0.00 39.83 2.43
3972 6823 1.159285 CCCCGTTTACGAGGAAAACC 58.841 55.000 3.46 0.00 39.83 3.27
3973 6824 1.542987 CCCCGTTTACGAGGAAAACCA 60.543 52.381 3.46 0.00 39.83 3.67
3974 6825 2.220313 CCCGTTTACGAGGAAAACCAA 58.780 47.619 3.46 0.00 43.02 3.67
3975 6826 2.224784 CCCGTTTACGAGGAAAACCAAG 59.775 50.000 3.46 0.00 43.02 3.61
3976 6827 2.350102 CCGTTTACGAGGAAAACCAAGC 60.350 50.000 3.46 0.00 43.02 4.01
3977 6828 2.350102 CGTTTACGAGGAAAACCAAGCC 60.350 50.000 0.00 0.00 43.02 4.35
3978 6829 1.515081 TTACGAGGAAAACCAAGCCG 58.485 50.000 0.00 0.00 0.00 5.52
3979 6830 0.680618 TACGAGGAAAACCAAGCCGA 59.319 50.000 0.00 0.00 0.00 5.54
3980 6831 0.179040 ACGAGGAAAACCAAGCCGAA 60.179 50.000 0.00 0.00 0.00 4.30
3981 6832 0.948678 CGAGGAAAACCAAGCCGAAA 59.051 50.000 0.00 0.00 0.00 3.46
3982 6833 1.335496 CGAGGAAAACCAAGCCGAAAA 59.665 47.619 0.00 0.00 0.00 2.29
3983 6834 2.030274 CGAGGAAAACCAAGCCGAAAAT 60.030 45.455 0.00 0.00 0.00 1.82
3984 6835 3.575630 GAGGAAAACCAAGCCGAAAATC 58.424 45.455 0.00 0.00 0.00 2.17
3985 6836 3.230976 AGGAAAACCAAGCCGAAAATCT 58.769 40.909 0.00 0.00 0.00 2.40
3986 6837 3.005791 AGGAAAACCAAGCCGAAAATCTG 59.994 43.478 0.00 0.00 0.00 2.90
3987 6838 3.005367 GGAAAACCAAGCCGAAAATCTGA 59.995 43.478 0.00 0.00 0.00 3.27
3988 6839 3.643159 AAACCAAGCCGAAAATCTGAC 57.357 42.857 0.00 0.00 0.00 3.51
3989 6840 2.270352 ACCAAGCCGAAAATCTGACA 57.730 45.000 0.00 0.00 0.00 3.58
3990 6841 2.582052 ACCAAGCCGAAAATCTGACAA 58.418 42.857 0.00 0.00 0.00 3.18
3991 6842 2.554032 ACCAAGCCGAAAATCTGACAAG 59.446 45.455 0.00 0.00 0.00 3.16
3992 6843 2.554032 CCAAGCCGAAAATCTGACAAGT 59.446 45.455 0.00 0.00 0.00 3.16
3993 6844 3.751175 CCAAGCCGAAAATCTGACAAGTA 59.249 43.478 0.00 0.00 0.00 2.24
3994 6845 4.215399 CCAAGCCGAAAATCTGACAAGTAA 59.785 41.667 0.00 0.00 0.00 2.24
3995 6846 5.147162 CAAGCCGAAAATCTGACAAGTAAC 58.853 41.667 0.00 0.00 0.00 2.50
3996 6847 4.385825 AGCCGAAAATCTGACAAGTAACA 58.614 39.130 0.00 0.00 0.00 2.41
3997 6848 4.819630 AGCCGAAAATCTGACAAGTAACAA 59.180 37.500 0.00 0.00 0.00 2.83
3998 6849 5.049405 AGCCGAAAATCTGACAAGTAACAAG 60.049 40.000 0.00 0.00 0.00 3.16
3999 6850 5.277828 GCCGAAAATCTGACAAGTAACAAGT 60.278 40.000 0.00 0.00 0.00 3.16
4000 6851 6.136071 CCGAAAATCTGACAAGTAACAAGTG 58.864 40.000 0.00 0.00 0.00 3.16
4001 6852 6.238374 CCGAAAATCTGACAAGTAACAAGTGT 60.238 38.462 0.00 0.00 0.00 3.55
4002 6853 7.186804 CGAAAATCTGACAAGTAACAAGTGTT 58.813 34.615 1.75 1.75 41.73 3.32
4003 6854 8.332464 CGAAAATCTGACAAGTAACAAGTGTTA 58.668 33.333 0.00 0.00 39.31 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.060000 CGCCGGAAAAAGGGGGAC 61.060 66.667 5.05 0.00 38.44 4.46
4 5 3.060000 GTCCCGCCGGAAAAAGGG 61.060 66.667 5.05 9.46 40.92 3.95
5 6 3.060000 GGTCCCGCCGGAAAAAGG 61.060 66.667 5.05 0.00 40.92 3.11
38 39 0.108424 AGAGTGAGTGAGCGAATGGC 60.108 55.000 0.00 0.00 44.05 4.40
39 40 1.638133 CAGAGTGAGTGAGCGAATGG 58.362 55.000 0.00 0.00 0.00 3.16
40 41 1.203287 TCCAGAGTGAGTGAGCGAATG 59.797 52.381 0.00 0.00 0.00 2.67
41 42 1.550327 TCCAGAGTGAGTGAGCGAAT 58.450 50.000 0.00 0.00 0.00 3.34
42 43 1.474478 GATCCAGAGTGAGTGAGCGAA 59.526 52.381 0.00 0.00 0.00 4.70
43 44 1.098869 GATCCAGAGTGAGTGAGCGA 58.901 55.000 0.00 0.00 0.00 4.93
44 45 1.065401 GAGATCCAGAGTGAGTGAGCG 59.935 57.143 0.00 0.00 0.00 5.03
45 46 1.408702 GGAGATCCAGAGTGAGTGAGC 59.591 57.143 0.00 0.00 35.64 4.26
46 47 1.675483 CGGAGATCCAGAGTGAGTGAG 59.325 57.143 0.00 0.00 35.14 3.51
47 48 1.004862 ACGGAGATCCAGAGTGAGTGA 59.995 52.381 0.00 0.00 35.14 3.41
48 49 1.403679 GACGGAGATCCAGAGTGAGTG 59.596 57.143 0.00 0.00 35.14 3.51
49 50 1.757682 GACGGAGATCCAGAGTGAGT 58.242 55.000 0.00 0.00 35.14 3.41
50 51 0.660488 CGACGGAGATCCAGAGTGAG 59.340 60.000 0.00 0.00 35.14 3.51
51 52 1.377366 GCGACGGAGATCCAGAGTGA 61.377 60.000 0.00 0.00 35.14 3.41
52 53 1.064946 GCGACGGAGATCCAGAGTG 59.935 63.158 0.00 0.00 35.14 3.51
53 54 2.122167 GGCGACGGAGATCCAGAGT 61.122 63.158 0.00 0.00 35.14 3.24
54 55 2.725008 GGCGACGGAGATCCAGAG 59.275 66.667 0.00 0.00 35.14 3.35
112 113 5.923733 TCCCTAAGTCAACTTTGCAAAAA 57.076 34.783 13.84 0.00 37.40 1.94
113 114 5.362430 ACATCCCTAAGTCAACTTTGCAAAA 59.638 36.000 13.84 0.00 37.40 2.44
114 115 4.892934 ACATCCCTAAGTCAACTTTGCAAA 59.107 37.500 12.14 12.14 37.40 3.68
115 116 4.278170 CACATCCCTAAGTCAACTTTGCAA 59.722 41.667 0.00 0.00 37.40 4.08
116 117 3.820467 CACATCCCTAAGTCAACTTTGCA 59.180 43.478 0.00 0.00 37.40 4.08
117 118 3.821033 ACACATCCCTAAGTCAACTTTGC 59.179 43.478 0.00 0.00 37.40 3.68
118 119 5.308825 AGACACATCCCTAAGTCAACTTTG 58.691 41.667 0.00 0.00 37.40 2.77
119 120 5.513267 GGAGACACATCCCTAAGTCAACTTT 60.513 44.000 0.00 0.00 34.00 2.66
120 121 4.020128 GGAGACACATCCCTAAGTCAACTT 60.020 45.833 0.46 0.46 35.32 2.66
121 122 3.515901 GGAGACACATCCCTAAGTCAACT 59.484 47.826 0.00 0.00 32.79 3.16
122 123 3.863041 GGAGACACATCCCTAAGTCAAC 58.137 50.000 0.00 0.00 32.79 3.18
132 133 2.509336 CACGCGGGAGACACATCC 60.509 66.667 12.47 0.00 38.76 3.51
133 134 0.108992 TAACACGCGGGAGACACATC 60.109 55.000 19.19 0.00 0.00 3.06
134 135 0.535335 ATAACACGCGGGAGACACAT 59.465 50.000 19.19 0.00 0.00 3.21
135 136 1.135315 GTATAACACGCGGGAGACACA 60.135 52.381 19.19 0.00 0.00 3.72
136 137 1.553308 GTATAACACGCGGGAGACAC 58.447 55.000 19.19 3.43 0.00 3.67
137 138 0.457035 GGTATAACACGCGGGAGACA 59.543 55.000 19.19 0.00 0.00 3.41
138 139 0.457035 TGGTATAACACGCGGGAGAC 59.543 55.000 19.19 6.77 0.00 3.36
139 140 1.405872 ATGGTATAACACGCGGGAGA 58.594 50.000 19.19 1.18 0.00 3.71
140 141 3.243636 ACTTATGGTATAACACGCGGGAG 60.244 47.826 19.19 4.25 0.00 4.30
141 142 2.694628 ACTTATGGTATAACACGCGGGA 59.305 45.455 19.19 0.00 0.00 5.14
142 143 3.102052 ACTTATGGTATAACACGCGGG 57.898 47.619 6.92 6.92 0.00 6.13
143 144 3.866910 ACAACTTATGGTATAACACGCGG 59.133 43.478 12.47 1.27 0.00 6.46
144 145 5.459110 AACAACTTATGGTATAACACGCG 57.541 39.130 3.53 3.53 0.00 6.01
145 146 8.019094 AGAAAAACAACTTATGGTATAACACGC 58.981 33.333 0.00 0.00 0.00 5.34
146 147 9.887406 AAGAAAAACAACTTATGGTATAACACG 57.113 29.630 0.00 0.00 0.00 4.49
151 152 8.723311 CCGTCAAGAAAAACAACTTATGGTATA 58.277 33.333 0.00 0.00 0.00 1.47
152 153 7.229907 ACCGTCAAGAAAAACAACTTATGGTAT 59.770 33.333 0.00 0.00 0.00 2.73
153 154 6.543100 ACCGTCAAGAAAAACAACTTATGGTA 59.457 34.615 0.00 0.00 0.00 3.25
154 155 5.358725 ACCGTCAAGAAAAACAACTTATGGT 59.641 36.000 0.00 0.00 0.00 3.55
155 156 5.827666 ACCGTCAAGAAAAACAACTTATGG 58.172 37.500 0.00 0.00 0.00 2.74
156 157 5.912955 GGACCGTCAAGAAAAACAACTTATG 59.087 40.000 0.00 0.00 0.00 1.90
157 158 5.826208 AGGACCGTCAAGAAAAACAACTTAT 59.174 36.000 0.00 0.00 0.00 1.73
158 159 5.187687 AGGACCGTCAAGAAAAACAACTTA 58.812 37.500 0.00 0.00 0.00 2.24
159 160 4.014406 AGGACCGTCAAGAAAAACAACTT 58.986 39.130 0.00 0.00 0.00 2.66
160 161 3.617284 AGGACCGTCAAGAAAAACAACT 58.383 40.909 0.00 0.00 0.00 3.16
161 162 4.365899 AAGGACCGTCAAGAAAAACAAC 57.634 40.909 0.00 0.00 0.00 3.32
162 163 4.218852 ACAAAGGACCGTCAAGAAAAACAA 59.781 37.500 0.00 0.00 0.00 2.83
163 164 3.759618 ACAAAGGACCGTCAAGAAAAACA 59.240 39.130 0.00 0.00 0.00 2.83
164 165 4.102649 CACAAAGGACCGTCAAGAAAAAC 58.897 43.478 0.00 0.00 0.00 2.43
165 166 3.428316 GCACAAAGGACCGTCAAGAAAAA 60.428 43.478 0.00 0.00 0.00 1.94
166 167 2.098443 GCACAAAGGACCGTCAAGAAAA 59.902 45.455 0.00 0.00 0.00 2.29
220 221 3.185188 CACAAAGACATCGACCTGACAAG 59.815 47.826 0.00 0.00 0.00 3.16
380 480 6.543735 AGGTCCAGCTTTTGTAGTATTTCTT 58.456 36.000 0.00 0.00 0.00 2.52
394 494 1.077625 AGTCCTCGAGGTCCAGCTT 59.922 57.895 30.17 6.47 36.34 3.74
395 495 1.680651 CAGTCCTCGAGGTCCAGCT 60.681 63.158 30.17 17.65 36.34 4.24
455 556 0.186873 ATGGAGGAATGATGGCACCC 59.813 55.000 0.00 0.00 0.00 4.61
492 593 3.007323 GGGCGGACTGGTAGGGTT 61.007 66.667 0.00 0.00 0.00 4.11
539 674 0.618458 TGACTCCCGATCCCCTTTTG 59.382 55.000 0.00 0.00 0.00 2.44
748 925 2.509336 CTTCGATTGCCGGTCGCT 60.509 61.111 1.90 0.00 38.88 4.93
795 973 3.074281 TCCGGAAAGGATTGCCGT 58.926 55.556 0.00 0.00 45.98 5.68
871 1095 9.539825 CCAGATTTATATATAGCTGCTAGGTTG 57.460 37.037 15.41 0.46 0.00 3.77
986 1216 0.031314 CGTCATGTCGAGGGAGGATG 59.969 60.000 6.49 0.00 0.00 3.51
1012 1243 0.036294 GGAAAGGAACAGGAGGACGG 60.036 60.000 0.00 0.00 0.00 4.79
1076 1323 6.626302 TGGTTCCTACTTTTTGTTGTTCTTG 58.374 36.000 0.00 0.00 0.00 3.02
1129 3584 6.712241 TTTTGACATTTCGCAAACAGAAAA 57.288 29.167 0.00 0.00 40.44 2.29
1136 3591 3.553511 ACGCAATTTTGACATTTCGCAAA 59.446 34.783 0.00 0.00 32.63 3.68
1207 3662 6.266786 AGTCCTTTGTAATTACCCACAAAAGG 59.733 38.462 24.93 24.93 42.38 3.11
1208 3663 7.145323 CAGTCCTTTGTAATTACCCACAAAAG 58.855 38.462 13.01 13.71 42.38 2.27
1210 3665 6.130569 ACAGTCCTTTGTAATTACCCACAAA 58.869 36.000 13.01 8.36 41.16 2.83
1211 3666 5.697067 ACAGTCCTTTGTAATTACCCACAA 58.303 37.500 13.01 0.24 32.98 3.33
1212 3667 5.313280 ACAGTCCTTTGTAATTACCCACA 57.687 39.130 13.01 0.00 0.00 4.17
1213 3668 6.470278 AGTACAGTCCTTTGTAATTACCCAC 58.530 40.000 13.01 2.96 35.47 4.61
1214 3669 6.691255 AGTACAGTCCTTTGTAATTACCCA 57.309 37.500 13.01 0.00 35.47 4.51
1215 3670 8.480501 TGATAGTACAGTCCTTTGTAATTACCC 58.519 37.037 13.01 0.00 35.47 3.69
1222 3677 9.787435 ACAATTTTGATAGTACAGTCCTTTGTA 57.213 29.630 0.00 0.00 32.56 2.41
1224 3679 8.567948 ACACAATTTTGATAGTACAGTCCTTTG 58.432 33.333 0.00 0.00 0.00 2.77
1225 3680 8.567948 CACACAATTTTGATAGTACAGTCCTTT 58.432 33.333 0.00 0.00 0.00 3.11
1536 4145 0.472471 TGGGCTCAAAAGAACCGACT 59.528 50.000 0.00 0.00 0.00 4.18
1558 4167 5.121925 GTGAGGTTAATTTTCTCCTTCCGTC 59.878 44.000 0.00 0.00 0.00 4.79
1611 4226 3.068881 CTCCTGGTTGCTTCCCGA 58.931 61.111 0.00 0.00 0.00 5.14
1817 4432 2.091885 ACCATGAACCGCTTCCCATAAT 60.092 45.455 0.00 0.00 0.00 1.28
2330 4976 7.832503 ATGCAGAATTATGTTAGCCAAAAAC 57.167 32.000 1.46 0.00 0.00 2.43
2402 5052 0.463295 TGCGGAACACCGGTAACAAA 60.463 50.000 6.87 0.00 45.94 2.83
2463 5113 7.050377 AGTATGAACATCGTCCAATTCAGATT 58.950 34.615 0.00 0.00 34.71 2.40
2562 5215 7.894376 ATTCAACATGTGCTGGAATAAAAAG 57.106 32.000 0.00 0.00 0.00 2.27
2708 5381 2.233676 TCTCCTCGCTAAACTCATGCAA 59.766 45.455 0.00 0.00 0.00 4.08
3002 5678 1.371183 CCTGTCAACTCGGGAAGCA 59.629 57.895 0.00 0.00 36.02 3.91
3204 5880 6.026947 ACTTGACACTACTGTTAAGGCTAG 57.973 41.667 10.38 0.00 44.56 3.42
3234 5910 6.424812 CCCAACAAGGAATGAAGAATGAAAAC 59.575 38.462 0.00 0.00 41.22 2.43
3436 6225 8.818057 GTGCTTATACCAATTTCACTACTGTAG 58.182 37.037 13.13 13.13 0.00 2.74
3653 6499 6.989709 ATAGAGACCCTACCCTATGTCATA 57.010 41.667 0.00 0.00 0.00 2.15
3654 6500 5.887480 ATAGAGACCCTACCCTATGTCAT 57.113 43.478 0.00 0.00 0.00 3.06
3655 6501 5.394738 CAATAGAGACCCTACCCTATGTCA 58.605 45.833 0.00 0.00 0.00 3.58
3656 6502 4.221041 GCAATAGAGACCCTACCCTATGTC 59.779 50.000 0.00 0.00 0.00 3.06
3657 6503 4.140663 AGCAATAGAGACCCTACCCTATGT 60.141 45.833 0.00 0.00 0.00 2.29
3658 6504 4.421131 AGCAATAGAGACCCTACCCTATG 58.579 47.826 0.00 0.00 0.00 2.23
3659 6505 4.768807 AGCAATAGAGACCCTACCCTAT 57.231 45.455 0.00 0.00 0.00 2.57
3660 6506 4.202652 GGTAGCAATAGAGACCCTACCCTA 60.203 50.000 0.00 0.00 41.24 3.53
3661 6507 3.438225 GGTAGCAATAGAGACCCTACCCT 60.438 52.174 0.00 0.00 41.24 4.34
3662 6508 2.898612 GGTAGCAATAGAGACCCTACCC 59.101 54.545 0.00 0.00 41.24 3.69
3834 6685 3.331294 TCCTTCCCCGGTGATTCTAAAAA 59.669 43.478 0.00 0.00 0.00 1.94
3835 6686 2.914278 TCCTTCCCCGGTGATTCTAAAA 59.086 45.455 0.00 0.00 0.00 1.52
3836 6687 2.504175 CTCCTTCCCCGGTGATTCTAAA 59.496 50.000 0.00 0.00 0.00 1.85
3837 6688 2.116238 CTCCTTCCCCGGTGATTCTAA 58.884 52.381 0.00 0.00 0.00 2.10
3838 6689 1.007963 ACTCCTTCCCCGGTGATTCTA 59.992 52.381 0.00 0.00 0.00 2.10
3839 6690 0.252742 ACTCCTTCCCCGGTGATTCT 60.253 55.000 0.00 0.00 0.00 2.40
3840 6691 0.178301 GACTCCTTCCCCGGTGATTC 59.822 60.000 0.00 0.00 0.00 2.52
3841 6692 1.272554 GGACTCCTTCCCCGGTGATT 61.273 60.000 0.00 0.00 38.70 2.57
3842 6693 1.689582 GGACTCCTTCCCCGGTGAT 60.690 63.158 0.00 0.00 38.70 3.06
3843 6694 2.284405 GGACTCCTTCCCCGGTGA 60.284 66.667 0.00 0.00 38.70 4.02
3857 6708 4.042187 AGCAATATATTCAGGTGGAGGGAC 59.958 45.833 0.00 0.00 0.00 4.46
3858 6709 4.242811 AGCAATATATTCAGGTGGAGGGA 58.757 43.478 0.00 0.00 0.00 4.20
3859 6710 4.042062 TGAGCAATATATTCAGGTGGAGGG 59.958 45.833 0.00 0.00 0.00 4.30
3860 6711 5.233083 TGAGCAATATATTCAGGTGGAGG 57.767 43.478 0.00 0.00 0.00 4.30
3861 6712 6.769822 ACTTTGAGCAATATATTCAGGTGGAG 59.230 38.462 0.00 0.00 0.00 3.86
3862 6713 6.543465 CACTTTGAGCAATATATTCAGGTGGA 59.457 38.462 0.00 0.00 0.00 4.02
3863 6714 6.543465 TCACTTTGAGCAATATATTCAGGTGG 59.457 38.462 14.27 0.35 32.51 4.61
3864 6715 7.412853 GTCACTTTGAGCAATATATTCAGGTG 58.587 38.462 0.00 5.27 32.70 4.00
3865 6716 6.543831 GGTCACTTTGAGCAATATATTCAGGT 59.456 38.462 0.00 0.00 43.79 4.00
3866 6717 6.963796 GGTCACTTTGAGCAATATATTCAGG 58.036 40.000 0.00 0.00 43.79 3.86
3878 6729 2.754552 TGGCATTATGGTCACTTTGAGC 59.245 45.455 0.00 0.00 44.54 4.26
3879 6730 4.264253 TCTGGCATTATGGTCACTTTGAG 58.736 43.478 0.00 0.00 0.00 3.02
3880 6731 4.299586 TCTGGCATTATGGTCACTTTGA 57.700 40.909 0.00 0.00 0.00 2.69
3881 6732 4.701651 TCTTCTGGCATTATGGTCACTTTG 59.298 41.667 0.00 0.00 0.00 2.77
3882 6733 4.922206 TCTTCTGGCATTATGGTCACTTT 58.078 39.130 0.00 0.00 0.00 2.66
3883 6734 4.018960 ACTCTTCTGGCATTATGGTCACTT 60.019 41.667 0.00 0.00 0.00 3.16
3884 6735 3.521126 ACTCTTCTGGCATTATGGTCACT 59.479 43.478 0.00 0.00 0.00 3.41
3885 6736 3.624861 CACTCTTCTGGCATTATGGTCAC 59.375 47.826 0.00 0.00 0.00 3.67
3886 6737 3.519107 TCACTCTTCTGGCATTATGGTCA 59.481 43.478 0.00 0.00 0.00 4.02
3887 6738 4.142609 TCACTCTTCTGGCATTATGGTC 57.857 45.455 0.00 0.00 0.00 4.02
3888 6739 4.445448 GGATCACTCTTCTGGCATTATGGT 60.445 45.833 0.00 0.00 0.00 3.55
3889 6740 4.070716 GGATCACTCTTCTGGCATTATGG 58.929 47.826 0.00 0.00 0.00 2.74
3890 6741 4.711399 TGGATCACTCTTCTGGCATTATG 58.289 43.478 0.00 0.00 0.00 1.90
3891 6742 4.411540 ACTGGATCACTCTTCTGGCATTAT 59.588 41.667 0.00 0.00 0.00 1.28
3892 6743 3.776969 ACTGGATCACTCTTCTGGCATTA 59.223 43.478 0.00 0.00 0.00 1.90
3893 6744 2.575279 ACTGGATCACTCTTCTGGCATT 59.425 45.455 0.00 0.00 0.00 3.56
3894 6745 2.194859 ACTGGATCACTCTTCTGGCAT 58.805 47.619 0.00 0.00 0.00 4.40
3895 6746 1.649321 ACTGGATCACTCTTCTGGCA 58.351 50.000 0.00 0.00 0.00 4.92
3896 6747 2.777832 AACTGGATCACTCTTCTGGC 57.222 50.000 0.00 0.00 0.00 4.85
3897 6748 8.260818 TCTTTATAAACTGGATCACTCTTCTGG 58.739 37.037 0.00 0.00 0.00 3.86
3898 6749 9.658799 TTCTTTATAAACTGGATCACTCTTCTG 57.341 33.333 0.00 0.00 0.00 3.02
3902 6753 9.232473 GGTTTTCTTTATAAACTGGATCACTCT 57.768 33.333 0.00 0.00 36.12 3.24
3903 6754 8.175716 CGGTTTTCTTTATAAACTGGATCACTC 58.824 37.037 0.00 0.00 37.92 3.51
3904 6755 8.040716 CGGTTTTCTTTATAAACTGGATCACT 57.959 34.615 0.00 0.00 37.92 3.41
3911 6762 7.298507 TCGATCCGGTTTTCTTTATAAACTG 57.701 36.000 0.00 0.00 40.12 3.16
3912 6763 7.910441 TTCGATCCGGTTTTCTTTATAAACT 57.090 32.000 0.00 0.00 36.12 2.66
3913 6764 8.843733 GTTTTCGATCCGGTTTTCTTTATAAAC 58.156 33.333 0.00 0.00 35.31 2.01
3914 6765 8.022550 GGTTTTCGATCCGGTTTTCTTTATAAA 58.977 33.333 0.00 0.00 0.00 1.40
3915 6766 7.391275 AGGTTTTCGATCCGGTTTTCTTTATAA 59.609 33.333 0.00 0.00 0.00 0.98
3916 6767 6.880529 AGGTTTTCGATCCGGTTTTCTTTATA 59.119 34.615 0.00 0.00 0.00 0.98
3917 6768 5.708697 AGGTTTTCGATCCGGTTTTCTTTAT 59.291 36.000 0.00 0.00 0.00 1.40
3918 6769 5.065235 AGGTTTTCGATCCGGTTTTCTTTA 58.935 37.500 0.00 0.00 0.00 1.85
3919 6770 3.887110 AGGTTTTCGATCCGGTTTTCTTT 59.113 39.130 0.00 0.00 0.00 2.52
3920 6771 3.483421 AGGTTTTCGATCCGGTTTTCTT 58.517 40.909 0.00 0.00 0.00 2.52
3921 6772 3.136009 AGGTTTTCGATCCGGTTTTCT 57.864 42.857 0.00 0.00 0.00 2.52
3922 6773 3.909776 AAGGTTTTCGATCCGGTTTTC 57.090 42.857 0.00 0.00 0.00 2.29
3923 6774 4.579753 TGTTAAGGTTTTCGATCCGGTTTT 59.420 37.500 0.00 0.00 0.00 2.43
3924 6775 4.136051 TGTTAAGGTTTTCGATCCGGTTT 58.864 39.130 0.00 0.00 0.00 3.27
3925 6776 3.742385 TGTTAAGGTTTTCGATCCGGTT 58.258 40.909 0.00 0.00 0.00 4.44
3926 6777 3.405823 TGTTAAGGTTTTCGATCCGGT 57.594 42.857 0.00 0.00 0.00 5.28
3927 6778 4.752661 TTTGTTAAGGTTTTCGATCCGG 57.247 40.909 0.00 0.00 0.00 5.14
3928 6779 6.304683 GTCAATTTGTTAAGGTTTTCGATCCG 59.695 38.462 0.00 0.00 0.00 4.18
3929 6780 6.584942 GGTCAATTTGTTAAGGTTTTCGATCC 59.415 38.462 0.00 0.00 0.00 3.36
3930 6781 6.584942 GGGTCAATTTGTTAAGGTTTTCGATC 59.415 38.462 0.00 0.00 0.00 3.69
3931 6782 6.452242 GGGTCAATTTGTTAAGGTTTTCGAT 58.548 36.000 0.00 0.00 0.00 3.59
3932 6783 5.221283 GGGGTCAATTTGTTAAGGTTTTCGA 60.221 40.000 0.00 0.00 0.00 3.71
3933 6784 4.986034 GGGGTCAATTTGTTAAGGTTTTCG 59.014 41.667 0.00 0.00 0.00 3.46
3934 6785 4.986034 CGGGGTCAATTTGTTAAGGTTTTC 59.014 41.667 0.00 0.00 0.00 2.29
3935 6786 4.406326 ACGGGGTCAATTTGTTAAGGTTTT 59.594 37.500 0.00 0.00 0.00 2.43
3936 6787 3.962063 ACGGGGTCAATTTGTTAAGGTTT 59.038 39.130 0.00 0.00 0.00 3.27
3937 6788 3.568443 ACGGGGTCAATTTGTTAAGGTT 58.432 40.909 0.00 0.00 0.00 3.50
3938 6789 3.232720 ACGGGGTCAATTTGTTAAGGT 57.767 42.857 0.00 0.00 0.00 3.50
3939 6790 4.594123 AAACGGGGTCAATTTGTTAAGG 57.406 40.909 0.00 0.00 0.00 2.69
3940 6791 5.049543 TCGTAAACGGGGTCAATTTGTTAAG 60.050 40.000 2.24 0.00 40.29 1.85
3941 6792 4.818546 TCGTAAACGGGGTCAATTTGTTAA 59.181 37.500 2.24 0.00 40.29 2.01
3942 6793 4.384056 TCGTAAACGGGGTCAATTTGTTA 58.616 39.130 2.24 0.00 40.29 2.41
3943 6794 3.212685 TCGTAAACGGGGTCAATTTGTT 58.787 40.909 2.24 0.00 40.29 2.83
3944 6795 2.809696 CTCGTAAACGGGGTCAATTTGT 59.190 45.455 2.24 0.00 40.29 2.83
3945 6796 3.465122 CTCGTAAACGGGGTCAATTTG 57.535 47.619 2.24 0.00 40.29 2.32
3954 6805 1.881591 TGGTTTTCCTCGTAAACGGG 58.118 50.000 2.24 0.00 41.38 5.28
3955 6806 2.350102 GCTTGGTTTTCCTCGTAAACGG 60.350 50.000 2.24 0.00 41.38 4.44
3956 6807 2.350102 GGCTTGGTTTTCCTCGTAAACG 60.350 50.000 0.00 0.00 41.38 3.60
3957 6808 2.350102 CGGCTTGGTTTTCCTCGTAAAC 60.350 50.000 0.00 0.00 41.38 2.01
3958 6809 1.874872 CGGCTTGGTTTTCCTCGTAAA 59.125 47.619 0.00 0.00 41.38 2.01
3959 6810 1.070445 TCGGCTTGGTTTTCCTCGTAA 59.930 47.619 0.00 0.00 41.38 3.18
3960 6811 0.680618 TCGGCTTGGTTTTCCTCGTA 59.319 50.000 0.00 0.00 41.38 3.43
3961 6812 0.179040 TTCGGCTTGGTTTTCCTCGT 60.179 50.000 0.00 0.00 41.38 4.18
3962 6813 0.948678 TTTCGGCTTGGTTTTCCTCG 59.051 50.000 0.00 0.00 41.38 4.63
3963 6814 3.255888 AGATTTTCGGCTTGGTTTTCCTC 59.744 43.478 0.00 0.00 41.38 3.71
3964 6815 3.005791 CAGATTTTCGGCTTGGTTTTCCT 59.994 43.478 0.00 0.00 41.38 3.36
3965 6816 3.005367 TCAGATTTTCGGCTTGGTTTTCC 59.995 43.478 0.00 0.00 41.14 3.13
3966 6817 3.981416 GTCAGATTTTCGGCTTGGTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
3967 6818 3.383185 TGTCAGATTTTCGGCTTGGTTTT 59.617 39.130 0.00 0.00 0.00 2.43
3968 6819 2.955660 TGTCAGATTTTCGGCTTGGTTT 59.044 40.909 0.00 0.00 0.00 3.27
3969 6820 2.582052 TGTCAGATTTTCGGCTTGGTT 58.418 42.857 0.00 0.00 0.00 3.67
3970 6821 2.270352 TGTCAGATTTTCGGCTTGGT 57.730 45.000 0.00 0.00 0.00 3.67
3971 6822 2.554032 ACTTGTCAGATTTTCGGCTTGG 59.446 45.455 0.00 0.00 0.00 3.61
3972 6823 3.904136 ACTTGTCAGATTTTCGGCTTG 57.096 42.857 0.00 0.00 0.00 4.01
3973 6824 4.819630 TGTTACTTGTCAGATTTTCGGCTT 59.180 37.500 0.00 0.00 0.00 4.35
3974 6825 4.385825 TGTTACTTGTCAGATTTTCGGCT 58.614 39.130 0.00 0.00 0.00 5.52
3975 6826 4.742438 TGTTACTTGTCAGATTTTCGGC 57.258 40.909 0.00 0.00 0.00 5.54
3976 6827 6.136071 CACTTGTTACTTGTCAGATTTTCGG 58.864 40.000 0.00 0.00 0.00 4.30
3977 6828 6.715464 ACACTTGTTACTTGTCAGATTTTCG 58.285 36.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.