Multiple sequence alignment - TraesCS1B01G090100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G090100 chr1B 100.000 3173 0 0 1 3173 90885322 90882150 0.000000e+00 5860.0
1 TraesCS1B01G090100 chr1B 88.119 101 9 3 453 550 627922260 627922360 2.000000e-22 117.0
2 TraesCS1B01G090100 chr1A 89.587 1815 121 29 721 2518 54016663 54014900 0.000000e+00 2242.0
3 TraesCS1B01G090100 chr1A 82.456 456 72 5 1 456 54017120 54016673 2.970000e-105 392.0
4 TraesCS1B01G090100 chr1A 85.047 107 13 3 451 555 49276252 49276357 4.330000e-19 106.0
5 TraesCS1B01G090100 chr1D 93.085 1287 85 4 723 2008 55423745 55422462 0.000000e+00 1881.0
6 TraesCS1B01G090100 chr1D 88.017 459 42 6 1 456 55424204 55423756 6.030000e-147 531.0
7 TraesCS1B01G090100 chr1D 82.917 480 49 21 2001 2466 55417430 55416970 4.930000e-108 401.0
8 TraesCS1B01G090100 chr1D 88.272 324 18 5 2853 3173 55416015 55415709 1.390000e-98 370.0
9 TraesCS1B01G090100 chr1D 86.792 106 12 2 448 552 490538217 490538113 2.000000e-22 117.0
10 TraesCS1B01G090100 chr1D 92.727 55 3 1 2588 2641 55416741 55416687 9.440000e-11 78.7
11 TraesCS1B01G090100 chr3B 80.911 1032 181 13 898 1921 819364751 819363728 0.000000e+00 800.0
12 TraesCS1B01G090100 chr3B 80.466 1029 191 10 898 1921 819504078 819503055 0.000000e+00 778.0
13 TraesCS1B01G090100 chr3B 81.023 938 171 5 977 1910 819187741 819186807 0.000000e+00 739.0
14 TraesCS1B01G090100 chr3B 80.475 968 170 15 898 1857 819630372 819629416 0.000000e+00 723.0
15 TraesCS1B01G090100 chr3B 81.290 155 21 8 447 599 628403544 628403692 5.560000e-23 119.0
16 TraesCS1B01G090100 chr3A 80.676 1035 177 18 898 1921 742321819 742320797 0.000000e+00 782.0
17 TraesCS1B01G090100 chr3D 80.466 1029 191 9 898 1921 608925243 608924220 0.000000e+00 778.0
18 TraesCS1B01G090100 chr5D 80.042 942 184 3 993 1933 447687290 447688228 0.000000e+00 695.0
19 TraesCS1B01G090100 chr6B 78.340 1048 215 10 893 1934 73164125 73163084 0.000000e+00 667.0
20 TraesCS1B01G090100 chr6A 92.655 177 13 0 552 728 153669704 153669880 4.060000e-64 255.0
21 TraesCS1B01G090100 chr2D 94.545 165 9 0 560 724 309971583 309971419 4.060000e-64 255.0
22 TraesCS1B01G090100 chr2D 88.235 102 9 3 453 553 305909908 305909809 5.560000e-23 119.0
23 TraesCS1B01G090100 chr5A 92.982 171 12 0 556 726 640948089 640948259 1.890000e-62 250.0
24 TraesCS1B01G090100 chr4A 92.529 174 13 0 551 724 362067902 362068075 1.890000e-62 250.0
25 TraesCS1B01G090100 chr4A 92.529 174 13 0 559 732 732790025 732790198 1.890000e-62 250.0
26 TraesCS1B01G090100 chr2B 83.394 277 36 10 453 725 778844978 778844708 6.800000e-62 248.0
27 TraesCS1B01G090100 chr6D 91.573 178 15 0 551 728 389700532 389700709 2.440000e-61 246.0
28 TraesCS1B01G090100 chr4D 91.620 179 13 2 549 725 477898782 477898960 2.440000e-61 246.0
29 TraesCS1B01G090100 chr7D 89.947 189 15 4 543 729 381797776 381797962 1.140000e-59 241.0
30 TraesCS1B01G090100 chr2A 88.235 102 9 3 453 553 384882140 384882041 5.560000e-23 119.0
31 TraesCS1B01G090100 chr4B 86.139 101 14 0 453 553 97390158 97390258 3.350000e-20 110.0
32 TraesCS1B01G090100 chr7B 81.667 120 20 2 436 553 40080474 40080593 7.240000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G090100 chr1B 90882150 90885322 3172 True 5860.000000 5860 100.0000 1 3173 1 chr1B.!!$R1 3172
1 TraesCS1B01G090100 chr1A 54014900 54017120 2220 True 1317.000000 2242 86.0215 1 2518 2 chr1A.!!$R1 2517
2 TraesCS1B01G090100 chr1D 55422462 55424204 1742 True 1206.000000 1881 90.5510 1 2008 2 chr1D.!!$R3 2007
3 TraesCS1B01G090100 chr1D 55415709 55417430 1721 True 283.233333 401 87.9720 2001 3173 3 chr1D.!!$R2 1172
4 TraesCS1B01G090100 chr3B 819363728 819364751 1023 True 800.000000 800 80.9110 898 1921 1 chr3B.!!$R2 1023
5 TraesCS1B01G090100 chr3B 819503055 819504078 1023 True 778.000000 778 80.4660 898 1921 1 chr3B.!!$R3 1023
6 TraesCS1B01G090100 chr3B 819186807 819187741 934 True 739.000000 739 81.0230 977 1910 1 chr3B.!!$R1 933
7 TraesCS1B01G090100 chr3B 819629416 819630372 956 True 723.000000 723 80.4750 898 1857 1 chr3B.!!$R4 959
8 TraesCS1B01G090100 chr3A 742320797 742321819 1022 True 782.000000 782 80.6760 898 1921 1 chr3A.!!$R1 1023
9 TraesCS1B01G090100 chr3D 608924220 608925243 1023 True 778.000000 778 80.4660 898 1921 1 chr3D.!!$R1 1023
10 TraesCS1B01G090100 chr5D 447687290 447688228 938 False 695.000000 695 80.0420 993 1933 1 chr5D.!!$F1 940
11 TraesCS1B01G090100 chr6B 73163084 73164125 1041 True 667.000000 667 78.3400 893 1934 1 chr6B.!!$R1 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 108 0.387565 AAAATTTTGTCGCCGCCTGT 59.612 45.000 1.75 0.0 0.00 4.00 F
326 330 0.387929 CGCGGAGGTAGCCAGAAATA 59.612 55.000 0.00 0.0 0.00 1.40 F
670 674 1.416030 TGCCTATGTACATCCGCATGT 59.584 47.619 20.27 0.0 45.73 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 1975 0.243636 CAAATTCCTTGGCCGACACC 59.756 55.000 0.00 0.00 0.00 4.16 R
1971 1978 1.740025 CTCTCAAATTCCTTGGCCGAC 59.260 52.381 0.00 0.00 35.56 4.79 R
2643 2776 0.106769 TTGAAACCTGCAGTGGCTCA 60.107 50.000 13.81 6.93 41.91 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.593006 CTCCATATCCGCGAACAACAC 59.407 52.381 8.23 0.00 0.00 3.32
33 34 1.066787 TCCATATCCGCGAACAACACA 60.067 47.619 8.23 0.00 0.00 3.72
53 57 1.224069 CCCGCATCGTGGATGATCAC 61.224 60.000 9.66 0.00 42.09 3.06
60 64 4.800582 GCATCGTGGATGATCACCAGAATA 60.801 45.833 14.84 4.62 42.09 1.75
63 67 4.835056 TCGTGGATGATCACCAGAATAGAT 59.165 41.667 14.84 0.00 38.14 1.98
74 78 4.406972 CACCAGAATAGATGAGAACCAGGA 59.593 45.833 0.00 0.00 0.00 3.86
92 96 2.158827 AGGAAACGCAGGGCAAAATTTT 60.159 40.909 0.00 0.00 0.00 1.82
93 97 2.032117 GGAAACGCAGGGCAAAATTTTG 60.032 45.455 23.74 23.74 41.03 2.44
94 98 2.323968 AACGCAGGGCAAAATTTTGT 57.676 40.000 27.13 9.34 40.24 2.83
104 108 0.387565 AAAATTTTGTCGCCGCCTGT 59.612 45.000 1.75 0.00 0.00 4.00
148 152 2.508436 TGGTTCGACCAGCAGCAA 59.492 55.556 0.00 0.00 44.79 3.91
181 185 1.743252 GGCCCGAGACTTTCAGCAG 60.743 63.158 0.00 0.00 0.00 4.24
184 188 1.018226 CCCGAGACTTTCAGCAGCAG 61.018 60.000 0.00 0.00 0.00 4.24
202 206 2.897436 CAGCGTGAAGGATTGAGATCA 58.103 47.619 0.00 0.00 33.77 2.92
211 215 2.158928 AGGATTGAGATCAGAGCTGCAC 60.159 50.000 1.02 0.00 33.77 4.57
239 243 4.444306 CCGCTATTTTAGAATGGGAGGTCA 60.444 45.833 0.00 0.00 0.00 4.02
242 246 5.474876 GCTATTTTAGAATGGGAGGTCATGG 59.525 44.000 0.00 0.00 0.00 3.66
246 250 2.850833 AGAATGGGAGGTCATGGAAGA 58.149 47.619 0.00 0.00 0.00 2.87
251 255 1.065126 GGGAGGTCATGGAAGACTTGG 60.065 57.143 0.00 0.00 38.57 3.61
254 258 2.501723 GAGGTCATGGAAGACTTGGCTA 59.498 50.000 0.00 0.00 38.57 3.93
255 259 2.237392 AGGTCATGGAAGACTTGGCTAC 59.763 50.000 0.00 0.00 38.57 3.58
257 261 1.899814 TCATGGAAGACTTGGCTACGT 59.100 47.619 0.00 0.00 0.00 3.57
285 289 2.180017 CGCCAAGTTGCAGCATCC 59.820 61.111 2.55 0.00 0.00 3.51
286 290 2.180017 GCCAAGTTGCAGCATCCG 59.820 61.111 2.55 0.00 0.00 4.18
287 291 2.334946 GCCAAGTTGCAGCATCCGA 61.335 57.895 2.55 0.00 0.00 4.55
306 310 2.050714 GACGACGGCGACTTGTCA 60.051 61.111 22.49 0.00 41.64 3.58
324 328 2.280552 ACGCGGAGGTAGCCAGAAA 61.281 57.895 12.47 0.00 0.00 2.52
326 330 0.387929 CGCGGAGGTAGCCAGAAATA 59.612 55.000 0.00 0.00 0.00 1.40
411 415 2.125673 CTACGTCGGCAACCCCTG 60.126 66.667 0.00 0.00 0.00 4.45
461 465 4.338795 TTCTCCATCTTGTACTCCTCCT 57.661 45.455 0.00 0.00 0.00 3.69
462 466 3.636679 TCTCCATCTTGTACTCCTCCTG 58.363 50.000 0.00 0.00 0.00 3.86
463 467 3.011821 TCTCCATCTTGTACTCCTCCTGT 59.988 47.826 0.00 0.00 0.00 4.00
465 469 4.168101 TCCATCTTGTACTCCTCCTGTTT 58.832 43.478 0.00 0.00 0.00 2.83
466 470 4.223032 TCCATCTTGTACTCCTCCTGTTTC 59.777 45.833 0.00 0.00 0.00 2.78
467 471 4.020218 CCATCTTGTACTCCTCCTGTTTCA 60.020 45.833 0.00 0.00 0.00 2.69
468 472 5.513094 CCATCTTGTACTCCTCCTGTTTCAA 60.513 44.000 0.00 0.00 0.00 2.69
469 473 5.623956 TCTTGTACTCCTCCTGTTTCAAA 57.376 39.130 0.00 0.00 0.00 2.69
470 474 5.996644 TCTTGTACTCCTCCTGTTTCAAAA 58.003 37.500 0.00 0.00 0.00 2.44
471 475 6.601332 TCTTGTACTCCTCCTGTTTCAAAAT 58.399 36.000 0.00 0.00 0.00 1.82
472 476 7.741785 TCTTGTACTCCTCCTGTTTCAAAATA 58.258 34.615 0.00 0.00 0.00 1.40
473 477 8.215050 TCTTGTACTCCTCCTGTTTCAAAATAA 58.785 33.333 0.00 0.00 0.00 1.40
474 478 7.979444 TGTACTCCTCCTGTTTCAAAATAAG 57.021 36.000 0.00 0.00 0.00 1.73
475 479 7.514721 TGTACTCCTCCTGTTTCAAAATAAGT 58.485 34.615 0.00 0.00 0.00 2.24
476 480 6.884280 ACTCCTCCTGTTTCAAAATAAGTG 57.116 37.500 0.00 0.00 0.00 3.16
477 481 6.365520 ACTCCTCCTGTTTCAAAATAAGTGT 58.634 36.000 0.00 0.00 0.00 3.55
478 482 6.486993 ACTCCTCCTGTTTCAAAATAAGTGTC 59.513 38.462 0.00 0.00 0.00 3.67
479 483 6.601332 TCCTCCTGTTTCAAAATAAGTGTCT 58.399 36.000 0.00 0.00 0.00 3.41
480 484 6.710744 TCCTCCTGTTTCAAAATAAGTGTCTC 59.289 38.462 0.00 0.00 0.00 3.36
481 485 6.486657 CCTCCTGTTTCAAAATAAGTGTCTCA 59.513 38.462 0.00 0.00 0.00 3.27
482 486 7.013274 CCTCCTGTTTCAAAATAAGTGTCTCAA 59.987 37.037 0.00 0.00 0.00 3.02
483 487 7.703328 TCCTGTTTCAAAATAAGTGTCTCAAC 58.297 34.615 0.00 0.00 0.00 3.18
484 488 7.556275 TCCTGTTTCAAAATAAGTGTCTCAACT 59.444 33.333 0.00 0.00 0.00 3.16
485 489 8.190784 CCTGTTTCAAAATAAGTGTCTCAACTT 58.809 33.333 0.00 0.00 42.89 2.66
486 490 9.573133 CTGTTTCAAAATAAGTGTCTCAACTTT 57.427 29.630 0.00 0.00 40.77 2.66
527 531 9.754382 TTAAAGTTAGTACAAAATCGAGACACT 57.246 29.630 0.00 0.00 0.00 3.55
528 532 8.658499 AAAGTTAGTACAAAATCGAGACACTT 57.342 30.769 0.00 0.00 0.00 3.16
529 533 9.754382 AAAGTTAGTACAAAATCGAGACACTTA 57.246 29.630 0.00 0.00 0.00 2.24
530 534 9.924650 AAGTTAGTACAAAATCGAGACACTTAT 57.075 29.630 0.00 0.00 0.00 1.73
531 535 9.924650 AGTTAGTACAAAATCGAGACACTTATT 57.075 29.630 0.00 0.00 0.00 1.40
543 547 8.263940 TCGAGACACTTATTTTAAAATGGAGG 57.736 34.615 21.19 14.24 0.00 4.30
544 548 7.335924 TCGAGACACTTATTTTAAAATGGAGGG 59.664 37.037 21.19 19.93 0.00 4.30
545 549 7.335924 CGAGACACTTATTTTAAAATGGAGGGA 59.664 37.037 23.92 5.42 0.00 4.20
546 550 8.581253 AGACACTTATTTTAAAATGGAGGGAG 57.419 34.615 23.92 16.64 0.00 4.30
547 551 8.170730 AGACACTTATTTTAAAATGGAGGGAGT 58.829 33.333 23.92 18.54 0.00 3.85
548 552 9.457436 GACACTTATTTTAAAATGGAGGGAGTA 57.543 33.333 23.92 3.70 0.00 2.59
549 553 9.239551 ACACTTATTTTAAAATGGAGGGAGTAC 57.760 33.333 23.92 0.00 0.00 2.73
550 554 9.462606 CACTTATTTTAAAATGGAGGGAGTACT 57.537 33.333 21.19 0.00 0.00 2.73
556 560 8.618240 TTTAAAATGGAGGGAGTACTATCTCA 57.382 34.615 20.06 10.92 36.30 3.27
557 561 8.798975 TTAAAATGGAGGGAGTACTATCTCAT 57.201 34.615 20.06 12.15 36.30 2.90
558 562 6.678568 AAATGGAGGGAGTACTATCTCATG 57.321 41.667 20.06 0.00 36.30 3.07
559 563 4.816048 TGGAGGGAGTACTATCTCATGT 57.184 45.455 20.06 0.00 36.30 3.21
560 564 5.924769 TGGAGGGAGTACTATCTCATGTA 57.075 43.478 20.06 6.74 36.30 2.29
561 565 5.632118 TGGAGGGAGTACTATCTCATGTAC 58.368 45.833 20.06 8.33 39.26 2.90
570 574 8.048016 AGTACTATCTCATGTACTCCCTTAGT 57.952 38.462 0.00 0.00 43.90 2.24
571 575 8.504409 AGTACTATCTCATGTACTCCCTTAGTT 58.496 37.037 0.00 0.00 43.90 2.24
572 576 7.826918 ACTATCTCATGTACTCCCTTAGTTC 57.173 40.000 0.00 0.00 39.80 3.01
573 577 6.778559 ACTATCTCATGTACTCCCTTAGTTCC 59.221 42.308 0.00 0.00 39.80 3.62
574 578 5.208294 TCTCATGTACTCCCTTAGTTCCT 57.792 43.478 0.00 0.00 39.80 3.36
575 579 6.337185 TCTCATGTACTCCCTTAGTTCCTA 57.663 41.667 0.00 0.00 39.80 2.94
576 580 6.738635 TCTCATGTACTCCCTTAGTTCCTAA 58.261 40.000 0.00 0.00 39.80 2.69
577 581 7.186972 TCTCATGTACTCCCTTAGTTCCTAAA 58.813 38.462 0.00 0.00 39.80 1.85
578 582 7.844779 TCTCATGTACTCCCTTAGTTCCTAAAT 59.155 37.037 0.00 0.00 39.80 1.40
579 583 9.144298 CTCATGTACTCCCTTAGTTCCTAAATA 57.856 37.037 0.00 0.00 39.80 1.40
580 584 9.670442 TCATGTACTCCCTTAGTTCCTAAATAT 57.330 33.333 0.00 0.00 39.80 1.28
586 590 9.059023 ACTCCCTTAGTTCCTAAATATTTGTCT 57.941 33.333 11.05 4.79 33.35 3.41
587 591 9.907229 CTCCCTTAGTTCCTAAATATTTGTCTT 57.093 33.333 11.05 0.00 0.00 3.01
606 610 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
607 611 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
608 612 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
609 613 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
610 614 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
611 615 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
612 616 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
613 617 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
614 618 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
616 620 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
617 621 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
618 622 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
619 623 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
620 624 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
621 625 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
622 626 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
623 627 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
639 643 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
640 644 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
653 657 8.894768 AGTGAATCTACACTCTAAAATATGCC 57.105 34.615 0.00 0.00 46.36 4.40
654 658 8.709308 AGTGAATCTACACTCTAAAATATGCCT 58.291 33.333 0.00 0.00 46.36 4.75
655 659 9.982651 GTGAATCTACACTCTAAAATATGCCTA 57.017 33.333 0.00 0.00 37.73 3.93
663 667 9.712305 ACACTCTAAAATATGCCTATGTACATC 57.288 33.333 12.68 0.00 0.00 3.06
664 668 9.155975 CACTCTAAAATATGCCTATGTACATCC 57.844 37.037 12.68 2.97 0.00 3.51
665 669 8.035394 ACTCTAAAATATGCCTATGTACATCCG 58.965 37.037 12.68 4.67 0.00 4.18
666 670 5.880054 AAAATATGCCTATGTACATCCGC 57.120 39.130 12.68 15.04 0.00 5.54
667 671 4.551702 AATATGCCTATGTACATCCGCA 57.448 40.909 24.17 24.17 32.05 5.69
668 672 4.760530 ATATGCCTATGTACATCCGCAT 57.239 40.909 30.24 30.24 38.45 4.73
669 673 2.168326 TGCCTATGTACATCCGCATG 57.832 50.000 20.27 1.14 35.92 4.06
670 674 1.416030 TGCCTATGTACATCCGCATGT 59.584 47.619 20.27 0.00 45.73 3.21
671 675 1.800586 GCCTATGTACATCCGCATGTG 59.199 52.381 12.68 0.00 43.54 3.21
672 676 2.806745 GCCTATGTACATCCGCATGTGT 60.807 50.000 12.68 0.00 43.54 3.72
673 677 3.466836 CCTATGTACATCCGCATGTGTT 58.533 45.455 12.68 0.00 43.54 3.32
674 678 4.627058 CCTATGTACATCCGCATGTGTTA 58.373 43.478 12.68 0.00 43.54 2.41
675 679 4.686091 CCTATGTACATCCGCATGTGTTAG 59.314 45.833 12.68 0.79 43.54 2.34
676 680 3.603158 TGTACATCCGCATGTGTTAGT 57.397 42.857 1.14 3.01 43.54 2.24
677 681 3.517602 TGTACATCCGCATGTGTTAGTC 58.482 45.455 1.14 0.00 43.54 2.59
678 682 3.194755 TGTACATCCGCATGTGTTAGTCT 59.805 43.478 1.14 0.00 43.54 3.24
679 683 4.399934 TGTACATCCGCATGTGTTAGTCTA 59.600 41.667 1.14 0.00 43.54 2.59
680 684 4.672587 ACATCCGCATGTGTTAGTCTAT 57.327 40.909 5.38 0.00 42.05 1.98
681 685 5.023533 ACATCCGCATGTGTTAGTCTATT 57.976 39.130 5.38 0.00 42.05 1.73
682 686 5.428253 ACATCCGCATGTGTTAGTCTATTT 58.572 37.500 5.38 0.00 42.05 1.40
683 687 6.578944 ACATCCGCATGTGTTAGTCTATTTA 58.421 36.000 5.38 0.00 42.05 1.40
684 688 7.045416 ACATCCGCATGTGTTAGTCTATTTAA 58.955 34.615 5.38 0.00 42.05 1.52
685 689 7.551262 ACATCCGCATGTGTTAGTCTATTTAAA 59.449 33.333 5.38 0.00 42.05 1.52
686 690 7.908827 TCCGCATGTGTTAGTCTATTTAAAA 57.091 32.000 5.38 0.00 0.00 1.52
687 691 8.500753 TCCGCATGTGTTAGTCTATTTAAAAT 57.499 30.769 5.38 0.00 0.00 1.82
688 692 8.609176 TCCGCATGTGTTAGTCTATTTAAAATC 58.391 33.333 5.38 0.00 0.00 2.17
689 693 8.612619 CCGCATGTGTTAGTCTATTTAAAATCT 58.387 33.333 5.38 0.00 0.00 2.40
690 694 9.638300 CGCATGTGTTAGTCTATTTAAAATCTC 57.362 33.333 0.00 0.00 0.00 2.75
799 803 5.683876 AGTCTTTACATACAGGTGAGCAT 57.316 39.130 0.00 0.00 0.00 3.79
828 832 8.958043 CCTTTAACTTGAACAAATTTTCTCTCG 58.042 33.333 0.00 0.00 0.00 4.04
849 855 8.922058 TCTCGTCTTTTCACCTATATTTACAC 57.078 34.615 0.00 0.00 0.00 2.90
850 856 8.525316 TCTCGTCTTTTCACCTATATTTACACA 58.475 33.333 0.00 0.00 0.00 3.72
852 858 7.274033 TCGTCTTTTCACCTATATTTACACACG 59.726 37.037 0.00 0.00 0.00 4.49
913 920 8.757164 TGTATTTTCAGGTATATACATCAGCG 57.243 34.615 14.70 0.00 30.73 5.18
915 922 7.891183 ATTTTCAGGTATATACATCAGCGTC 57.109 36.000 14.70 0.00 0.00 5.19
940 947 2.182842 GCTATTGGGGCTGCTGTCG 61.183 63.158 0.00 0.00 0.00 4.35
965 972 5.455392 ACTTTCGTTCTTCATTGCATTCTG 58.545 37.500 0.00 0.00 0.00 3.02
966 973 5.239306 ACTTTCGTTCTTCATTGCATTCTGA 59.761 36.000 0.00 0.00 0.00 3.27
976 983 7.601130 TCTTCATTGCATTCTGAATTTCAAAGG 59.399 33.333 14.75 11.54 31.39 3.11
1140 1147 6.626882 CCACAAACAATTTTGATAAAACACGC 59.373 34.615 4.18 0.00 44.38 5.34
1371 1378 5.163205 TGAGTTCATATCCAATGGTACCCTG 60.163 44.000 10.07 6.78 0.00 4.45
1407 1414 2.647299 TGTTGAGGGGCCAAGATCTTTA 59.353 45.455 4.86 0.00 0.00 1.85
1453 1460 5.772825 AGCAACTGAAACAGCTAAATCAA 57.227 34.783 0.00 0.00 35.19 2.57
1470 1477 8.663911 GCTAAATCAATAGCATATCTTCACTCC 58.336 37.037 1.64 0.00 46.06 3.85
1579 1586 3.010027 TGGTGCTTCAAGATACATTCCCA 59.990 43.478 0.00 0.00 0.00 4.37
1886 1893 3.621715 GCTAAGGCATGTGTACACCTAAC 59.378 47.826 22.91 11.02 38.54 2.34
1903 1910 1.668101 AACAGGAGAGGATCGTCCGC 61.668 60.000 11.71 4.77 42.75 5.54
1924 1931 3.866651 CCCATGAGACAAGTAGAGTTGG 58.133 50.000 0.00 0.00 0.00 3.77
1949 1956 2.629336 GAAGGCCTTCCAGTATCCAG 57.371 55.000 31.91 0.00 33.64 3.86
1956 1963 4.195416 GCCTTCCAGTATCCAGAAAGAAG 58.805 47.826 0.00 0.00 0.00 2.85
1971 1978 8.260818 TCCAGAAAGAAGATGTTAGATAAGGTG 58.739 37.037 0.00 0.00 0.00 4.00
2041 2048 4.565652 GGGTTGGAGATGAAAGAAGCAGTA 60.566 45.833 0.00 0.00 0.00 2.74
2046 2053 6.169094 TGGAGATGAAAGAAGCAGTAAAGAG 58.831 40.000 0.00 0.00 0.00 2.85
2047 2054 6.014242 TGGAGATGAAAGAAGCAGTAAAGAGA 60.014 38.462 0.00 0.00 0.00 3.10
2050 2057 4.945246 TGAAAGAAGCAGTAAAGAGACGT 58.055 39.130 0.00 0.00 0.00 4.34
2072 2079 5.333645 CGTCAAGACAATATAGCATGGAAGC 60.334 44.000 0.00 0.00 0.00 3.86
2140 2155 5.048921 ACAATGCAGACTCAATTTCTGACAG 60.049 40.000 9.37 0.00 42.81 3.51
2182 2197 8.958119 ATTTGAATTCATCTAACCTAGCGTTA 57.042 30.769 9.40 4.43 35.79 3.18
2198 2213 3.685058 GCGTTATGCTCTTGGTTCATTC 58.315 45.455 0.00 0.00 41.73 2.67
2212 2227 4.155826 TGGTTCATTCGCTCAAATGGTTAG 59.844 41.667 4.23 0.00 37.27 2.34
2224 2242 6.763610 GCTCAAATGGTTAGAAGCTATGTAGT 59.236 38.462 0.00 0.00 0.00 2.73
2304 2322 8.878769 GTGAACTTGTTTTCAATGGTTAATTGT 58.121 29.630 0.00 0.00 45.14 2.71
2411 2431 8.608844 AAACTCAAAGTCAGTCTTGGTTATAG 57.391 34.615 0.00 0.00 36.40 1.31
2429 2449 1.979155 GACCTTCTTTGGGCCTGCC 60.979 63.158 4.53 0.00 0.00 4.85
2456 2476 2.033322 GCTTTCAGTAATAGCTGAGCGC 60.033 50.000 0.00 0.00 45.03 5.92
2470 2490 2.104530 GCGCGACCTCTTAGGACC 59.895 66.667 12.10 0.00 37.67 4.46
2473 2493 1.432657 GCGACCTCTTAGGACCGAC 59.567 63.158 13.58 4.87 37.67 4.79
2518 2553 7.039434 TGGAACCAAATTGATGTGCTTACATAA 60.039 33.333 0.00 0.00 0.00 1.90
2520 2555 8.706492 AACCAAATTGATGTGCTTACATAATG 57.294 30.769 0.00 0.00 0.00 1.90
2521 2556 6.757947 ACCAAATTGATGTGCTTACATAATGC 59.242 34.615 0.00 0.00 0.00 3.56
2522 2557 6.074729 CCAAATTGATGTGCTTACATAATGCG 60.075 38.462 0.00 0.00 0.00 4.73
2523 2558 3.607422 TGATGTGCTTACATAATGCGC 57.393 42.857 0.00 0.00 37.67 6.09
2524 2559 2.290367 TGATGTGCTTACATAATGCGCC 59.710 45.455 4.18 0.00 36.51 6.53
2525 2560 1.743996 TGTGCTTACATAATGCGCCA 58.256 45.000 4.18 0.00 36.51 5.69
2526 2561 2.296792 TGTGCTTACATAATGCGCCAT 58.703 42.857 4.18 0.00 36.51 4.40
2527 2562 2.290367 TGTGCTTACATAATGCGCCATC 59.710 45.455 4.18 0.00 36.51 3.51
2529 2564 2.807967 TGCTTACATAATGCGCCATCTC 59.192 45.455 4.18 0.00 0.00 2.75
2530 2565 3.070018 GCTTACATAATGCGCCATCTCT 58.930 45.455 4.18 0.00 0.00 3.10
2531 2566 3.120408 GCTTACATAATGCGCCATCTCTG 60.120 47.826 4.18 0.00 0.00 3.35
2532 2567 2.916702 ACATAATGCGCCATCTCTGA 57.083 45.000 4.18 0.00 0.00 3.27
2533 2568 3.198409 ACATAATGCGCCATCTCTGAA 57.802 42.857 4.18 0.00 0.00 3.02
2534 2569 3.748083 ACATAATGCGCCATCTCTGAAT 58.252 40.909 4.18 0.00 0.00 2.57
2535 2570 3.501062 ACATAATGCGCCATCTCTGAATG 59.499 43.478 4.18 0.00 0.00 2.67
2539 2574 2.646930 TGCGCCATCTCTGAATGAAAT 58.353 42.857 4.18 0.00 0.00 2.17
2573 2691 9.717942 TTTTATTTTTACCACTGCATAGCAATT 57.282 25.926 0.00 0.00 38.41 2.32
2580 2698 3.560481 CCACTGCATAGCAATTCTCAGAG 59.440 47.826 0.00 0.00 38.41 3.35
2582 2700 4.270566 CACTGCATAGCAATTCTCAGAGAC 59.729 45.833 0.00 0.00 38.41 3.36
2583 2701 4.081254 ACTGCATAGCAATTCTCAGAGACA 60.081 41.667 0.00 0.00 38.41 3.41
2585 2703 3.559242 GCATAGCAATTCTCAGAGACACC 59.441 47.826 0.00 0.00 0.00 4.16
2586 2704 4.763073 CATAGCAATTCTCAGAGACACCA 58.237 43.478 0.00 0.00 0.00 4.17
2624 2751 8.049117 TCTCATCTGCTAGTAACCAAAATGAAT 58.951 33.333 0.00 0.00 0.00 2.57
2653 2786 3.015327 AGAATCAAAGATGAGCCACTGC 58.985 45.455 0.00 0.00 39.39 4.40
2654 2787 2.502142 ATCAAAGATGAGCCACTGCA 57.498 45.000 0.00 0.00 39.39 4.41
2657 2790 0.403271 AAAGATGAGCCACTGCAGGT 59.597 50.000 19.93 0.24 41.13 4.00
2665 2798 0.746659 GCCACTGCAGGTTTCAACTT 59.253 50.000 19.93 0.00 37.47 2.66
2670 2809 2.612212 ACTGCAGGTTTCAACTTACGTG 59.388 45.455 19.93 0.00 34.28 4.49
2675 2814 3.122948 CAGGTTTCAACTTACGTGGATCG 59.877 47.826 0.00 0.00 46.00 3.69
2690 2829 4.307432 GTGGATCGTCTCACTTGAAGAAA 58.693 43.478 0.00 0.00 0.00 2.52
2695 2834 2.155279 GTCTCACTTGAAGAAAGGGGC 58.845 52.381 0.00 0.00 40.01 5.80
2696 2835 1.160137 CTCACTTGAAGAAAGGGGCG 58.840 55.000 0.00 0.00 40.01 6.13
2697 2836 0.889186 TCACTTGAAGAAAGGGGCGC 60.889 55.000 0.00 0.00 40.01 6.53
2699 2838 2.671619 TTGAAGAAAGGGGCGCCG 60.672 61.111 22.54 0.00 0.00 6.46
2700 2839 3.185299 TTGAAGAAAGGGGCGCCGA 62.185 57.895 22.54 0.00 0.00 5.54
2701 2840 3.125573 GAAGAAAGGGGCGCCGAC 61.126 66.667 22.54 16.46 0.00 4.79
2713 2974 3.554692 GCCGACGCATCTTCCACG 61.555 66.667 0.00 0.00 34.03 4.94
2714 2975 2.885644 CCGACGCATCTTCCACGG 60.886 66.667 0.00 0.00 34.77 4.94
2716 2977 2.125512 GACGCATCTTCCACGGCT 60.126 61.111 0.00 0.00 0.00 5.52
2717 2978 2.434884 ACGCATCTTCCACGGCTG 60.435 61.111 0.00 0.00 0.00 4.85
2720 2981 2.125552 CATCTTCCACGGCTGCGA 60.126 61.111 0.00 0.00 0.00 5.10
2724 2985 3.288308 CTTCCACGGCTGCGACTCT 62.288 63.158 0.00 0.00 0.00 3.24
2725 2986 3.573772 TTCCACGGCTGCGACTCTG 62.574 63.158 0.00 0.00 0.00 3.35
2728 2989 3.295273 ACGGCTGCGACTCTGTCA 61.295 61.111 0.00 0.00 32.09 3.58
2730 2991 1.875813 CGGCTGCGACTCTGTCATC 60.876 63.158 0.00 0.00 32.09 2.92
2733 2994 1.508545 CTGCGACTCTGTCATCCGT 59.491 57.895 0.00 0.00 32.09 4.69
2734 2995 0.799917 CTGCGACTCTGTCATCCGTG 60.800 60.000 0.00 0.00 32.09 4.94
2737 2998 1.517257 GACTCTGTCATCCGTGCCG 60.517 63.158 0.00 0.00 32.09 5.69
2738 2999 2.890847 GACTCTGTCATCCGTGCCGG 62.891 65.000 0.00 0.00 39.34 6.13
2747 3008 3.066190 CCGTGCCGGTGGAGTAGA 61.066 66.667 1.90 0.00 42.73 2.59
2748 3009 2.181021 CGTGCCGGTGGAGTAGAC 59.819 66.667 1.90 0.00 0.00 2.59
2749 3010 2.632544 CGTGCCGGTGGAGTAGACA 61.633 63.158 1.90 0.00 0.00 3.41
2750 3011 1.669440 GTGCCGGTGGAGTAGACAA 59.331 57.895 1.90 0.00 0.00 3.18
2753 3014 0.320697 GCCGGTGGAGTAGACAAGTT 59.679 55.000 1.90 0.00 0.00 2.66
2754 3015 1.939838 GCCGGTGGAGTAGACAAGTTG 60.940 57.143 1.90 0.00 0.00 3.16
2755 3016 1.337823 CCGGTGGAGTAGACAAGTTGG 60.338 57.143 7.96 0.00 0.00 3.77
2756 3017 1.616865 CGGTGGAGTAGACAAGTTGGA 59.383 52.381 7.96 0.00 0.00 3.53
2758 3019 3.600388 GGTGGAGTAGACAAGTTGGATG 58.400 50.000 7.96 0.00 0.00 3.51
2759 3020 3.260884 GGTGGAGTAGACAAGTTGGATGA 59.739 47.826 7.96 0.00 0.00 2.92
2761 3022 4.021016 GTGGAGTAGACAAGTTGGATGACT 60.021 45.833 7.96 4.88 0.00 3.41
2762 3023 4.021104 TGGAGTAGACAAGTTGGATGACTG 60.021 45.833 7.96 0.00 0.00 3.51
2765 3026 4.780021 AGTAGACAAGTTGGATGACTGGAT 59.220 41.667 7.96 0.00 0.00 3.41
2766 3027 3.947868 AGACAAGTTGGATGACTGGATG 58.052 45.455 7.96 0.00 0.00 3.51
2767 3028 3.012518 GACAAGTTGGATGACTGGATGG 58.987 50.000 7.96 0.00 0.00 3.51
2768 3029 2.376518 ACAAGTTGGATGACTGGATGGT 59.623 45.455 7.96 0.00 0.00 3.55
2772 3033 0.977627 TGGATGACTGGATGGTCGCT 60.978 55.000 0.00 0.00 38.91 4.93
2775 3389 0.390860 ATGACTGGATGGTCGCTAGC 59.609 55.000 4.06 4.06 38.91 3.42
2781 3395 1.589196 GATGGTCGCTAGCCGTGTC 60.589 63.158 9.66 0.00 38.35 3.67
2783 3397 3.807538 GGTCGCTAGCCGTGTCGA 61.808 66.667 9.66 0.00 38.35 4.20
2787 3401 2.409651 GCTAGCCGTGTCGAGGAG 59.590 66.667 2.29 0.00 0.00 3.69
2811 3425 4.351054 CTGCGGGGCAAGGTCCTT 62.351 66.667 0.00 0.00 38.41 3.36
2812 3426 4.659172 TGCGGGGCAAGGTCCTTG 62.659 66.667 25.05 25.05 43.57 3.61
2813 3427 4.344865 GCGGGGCAAGGTCCTTGA 62.345 66.667 31.94 0.00 43.42 3.02
2814 3428 2.677228 CGGGGCAAGGTCCTTGAT 59.323 61.111 31.94 0.00 43.42 2.57
2815 3429 1.452108 CGGGGCAAGGTCCTTGATC 60.452 63.158 31.94 21.92 43.42 2.92
2817 3431 1.299976 GGGCAAGGTCCTTGATCGT 59.700 57.895 31.94 0.00 43.42 3.73
2819 3433 0.321653 GGCAAGGTCCTTGATCGTGT 60.322 55.000 31.94 0.00 43.42 4.49
2820 3434 1.523758 GCAAGGTCCTTGATCGTGTT 58.476 50.000 31.94 0.00 43.42 3.32
2821 3435 1.464997 GCAAGGTCCTTGATCGTGTTC 59.535 52.381 31.94 10.33 43.42 3.18
2823 3437 3.338249 CAAGGTCCTTGATCGTGTTCAT 58.662 45.455 25.15 0.00 43.42 2.57
2826 3440 3.198635 AGGTCCTTGATCGTGTTCATCAT 59.801 43.478 0.00 0.00 30.26 2.45
2827 3441 3.941483 GGTCCTTGATCGTGTTCATCATT 59.059 43.478 0.00 0.00 30.26 2.57
2828 3442 4.396166 GGTCCTTGATCGTGTTCATCATTT 59.604 41.667 0.00 0.00 30.26 2.32
2829 3443 5.106157 GGTCCTTGATCGTGTTCATCATTTT 60.106 40.000 0.00 0.00 30.26 1.82
2830 3444 6.381801 GTCCTTGATCGTGTTCATCATTTTT 58.618 36.000 0.00 0.00 30.26 1.94
2831 3445 7.361713 GGTCCTTGATCGTGTTCATCATTTTTA 60.362 37.037 0.00 0.00 30.26 1.52
2832 3446 8.184192 GTCCTTGATCGTGTTCATCATTTTTAT 58.816 33.333 0.00 0.00 30.26 1.40
2833 3447 8.739039 TCCTTGATCGTGTTCATCATTTTTATT 58.261 29.630 0.00 0.00 30.26 1.40
2834 3448 9.357652 CCTTGATCGTGTTCATCATTTTTATTT 57.642 29.630 0.00 0.00 30.26 1.40
2862 3476 8.922058 TTTTTAATCTAGACTAGATCGCGTTT 57.078 30.769 22.45 11.12 44.44 3.60
2869 3483 2.789893 GACTAGATCGCGTTTGTCATCC 59.210 50.000 5.77 0.00 0.00 3.51
2875 3489 1.421485 GCGTTTGTCATCCGCAGAG 59.579 57.895 10.69 0.00 46.26 3.35
2883 3500 1.043816 TCATCCGCAGAGGGAAGATC 58.956 55.000 0.00 0.00 40.09 2.75
2885 3502 0.468214 ATCCGCAGAGGGAAGATCGA 60.468 55.000 0.00 0.00 40.09 3.59
2904 3521 2.556622 CGACTTGGTGGGCTTTTGTTAT 59.443 45.455 0.00 0.00 0.00 1.89
2930 3547 0.040425 GCGTGCGTCTGGATTTGTTT 60.040 50.000 0.00 0.00 0.00 2.83
2987 3604 0.753262 CACGGAGACATAGGGAAGGG 59.247 60.000 0.00 0.00 0.00 3.95
3079 3696 2.815211 CACCTGGACGACGGCATG 60.815 66.667 1.63 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.224069 GATCATCCACGATGCGGGTG 61.224 60.000 0.00 0.00 39.63 4.61
33 34 1.069765 GATCATCCACGATGCGGGT 59.930 57.895 0.00 0.00 39.63 5.28
53 57 5.620738 TTCCTGGTTCTCATCTATTCTGG 57.379 43.478 0.00 0.00 0.00 3.86
60 64 1.347707 TGCGTTTCCTGGTTCTCATCT 59.652 47.619 0.00 0.00 0.00 2.90
63 67 0.250295 CCTGCGTTTCCTGGTTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
74 78 2.611751 GACAAAATTTTGCCCTGCGTTT 59.388 40.909 26.94 7.59 41.79 3.60
125 129 3.246112 CTGGTCGAACCACCCCCA 61.246 66.667 0.00 0.00 44.79 4.96
130 134 1.845809 CTTGCTGCTGGTCGAACCAC 61.846 60.000 0.00 0.00 44.79 4.16
181 185 1.596727 GATCTCAATCCTTCACGCTGC 59.403 52.381 0.00 0.00 0.00 5.25
184 188 3.122297 CTCTGATCTCAATCCTTCACGC 58.878 50.000 0.00 0.00 0.00 5.34
188 192 3.132925 GCAGCTCTGATCTCAATCCTTC 58.867 50.000 0.29 0.00 0.00 3.46
189 193 2.504585 TGCAGCTCTGATCTCAATCCTT 59.495 45.455 0.29 0.00 0.00 3.36
219 223 6.841601 TCCATGACCTCCCATTCTAAAATAG 58.158 40.000 0.00 0.00 0.00 1.73
239 243 1.066143 CCACGTAGCCAAGTCTTCCAT 60.066 52.381 0.00 0.00 0.00 3.41
242 246 1.019805 GCCCACGTAGCCAAGTCTTC 61.020 60.000 0.00 0.00 0.00 2.87
246 250 4.388499 CCGCCCACGTAGCCAAGT 62.388 66.667 4.32 0.00 37.70 3.16
285 289 4.731503 AAGTCGCCGTCGTCGTCG 62.732 66.667 4.87 4.87 39.77 5.12
286 290 3.164011 CAAGTCGCCGTCGTCGTC 61.164 66.667 0.71 0.00 36.96 4.20
287 291 3.868951 GACAAGTCGCCGTCGTCGT 62.869 63.158 0.71 0.00 36.96 4.34
306 310 1.614241 ATTTCTGGCTACCTCCGCGT 61.614 55.000 4.92 0.00 0.00 6.01
347 351 3.057033 CCTCTTCTCCCAAGTTTGCAATG 60.057 47.826 0.00 0.00 0.00 2.82
357 361 3.873801 GCACAAATAGCCTCTTCTCCCAA 60.874 47.826 0.00 0.00 0.00 4.12
436 440 7.671819 CAGGAGGAGTACAAGATGGAGAATATA 59.328 40.741 0.00 0.00 0.00 0.86
456 460 6.486657 TGAGACACTTATTTTGAAACAGGAGG 59.513 38.462 0.00 0.00 0.00 4.30
457 461 7.496529 TGAGACACTTATTTTGAAACAGGAG 57.503 36.000 0.00 0.00 0.00 3.69
458 462 7.556275 AGTTGAGACACTTATTTTGAAACAGGA 59.444 33.333 0.00 0.00 0.00 3.86
459 463 7.707104 AGTTGAGACACTTATTTTGAAACAGG 58.293 34.615 0.00 0.00 0.00 4.00
501 505 9.754382 AGTGTCTCGATTTTGTACTAACTTTAA 57.246 29.630 0.00 0.00 0.00 1.52
502 506 9.754382 AAGTGTCTCGATTTTGTACTAACTTTA 57.246 29.630 0.00 0.00 0.00 1.85
503 507 8.658499 AAGTGTCTCGATTTTGTACTAACTTT 57.342 30.769 0.00 0.00 0.00 2.66
504 508 9.924650 ATAAGTGTCTCGATTTTGTACTAACTT 57.075 29.630 0.00 0.00 0.00 2.66
505 509 9.924650 AATAAGTGTCTCGATTTTGTACTAACT 57.075 29.630 0.00 0.00 0.00 2.24
517 521 8.893727 CCTCCATTTTAAAATAAGTGTCTCGAT 58.106 33.333 12.98 0.00 0.00 3.59
518 522 7.335924 CCCTCCATTTTAAAATAAGTGTCTCGA 59.664 37.037 12.98 0.00 0.00 4.04
519 523 7.335924 TCCCTCCATTTTAAAATAAGTGTCTCG 59.664 37.037 12.98 0.00 0.00 4.04
520 524 8.575649 TCCCTCCATTTTAAAATAAGTGTCTC 57.424 34.615 12.98 0.00 0.00 3.36
521 525 8.170730 ACTCCCTCCATTTTAAAATAAGTGTCT 58.829 33.333 12.98 0.00 0.00 3.41
522 526 8.349568 ACTCCCTCCATTTTAAAATAAGTGTC 57.650 34.615 12.98 0.00 0.00 3.67
523 527 9.239551 GTACTCCCTCCATTTTAAAATAAGTGT 57.760 33.333 12.98 12.50 0.00 3.55
524 528 9.462606 AGTACTCCCTCCATTTTAAAATAAGTG 57.537 33.333 12.98 8.60 0.00 3.16
530 534 9.053472 TGAGATAGTACTCCCTCCATTTTAAAA 57.947 33.333 16.99 2.51 36.22 1.52
531 535 8.618240 TGAGATAGTACTCCCTCCATTTTAAA 57.382 34.615 16.99 0.00 36.22 1.52
532 536 8.651389 CATGAGATAGTACTCCCTCCATTTTAA 58.349 37.037 16.99 2.94 36.22 1.52
533 537 7.789831 ACATGAGATAGTACTCCCTCCATTTTA 59.210 37.037 16.99 3.47 36.22 1.52
534 538 6.617371 ACATGAGATAGTACTCCCTCCATTTT 59.383 38.462 16.99 1.23 36.22 1.82
535 539 6.146760 ACATGAGATAGTACTCCCTCCATTT 58.853 40.000 16.99 6.13 36.22 2.32
536 540 5.721225 ACATGAGATAGTACTCCCTCCATT 58.279 41.667 16.99 4.78 36.22 3.16
537 541 5.346782 ACATGAGATAGTACTCCCTCCAT 57.653 43.478 16.99 10.45 36.22 3.41
538 542 4.816048 ACATGAGATAGTACTCCCTCCA 57.184 45.455 16.99 9.13 36.22 3.86
539 543 5.883180 AGTACATGAGATAGTACTCCCTCC 58.117 45.833 16.99 6.03 45.69 4.30
546 550 8.694581 AACTAAGGGAGTACATGAGATAGTAC 57.305 38.462 0.00 0.00 37.44 2.73
547 551 7.943447 GGAACTAAGGGAGTACATGAGATAGTA 59.057 40.741 0.00 0.00 37.44 1.82
548 552 6.778559 GGAACTAAGGGAGTACATGAGATAGT 59.221 42.308 0.00 0.00 37.44 2.12
549 553 7.007723 AGGAACTAAGGGAGTACATGAGATAG 58.992 42.308 0.00 0.00 37.44 2.08
550 554 6.923670 AGGAACTAAGGGAGTACATGAGATA 58.076 40.000 0.00 0.00 37.44 1.98
551 555 5.782925 AGGAACTAAGGGAGTACATGAGAT 58.217 41.667 0.00 0.00 37.44 2.75
552 556 5.208294 AGGAACTAAGGGAGTACATGAGA 57.792 43.478 0.00 0.00 37.44 3.27
580 584 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
581 585 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
582 586 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
583 587 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
584 588 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
585 589 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
586 590 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
587 591 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
588 592 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
589 593 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
590 594 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
591 595 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
592 596 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
593 597 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
594 598 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
595 599 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
596 600 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
597 601 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
598 602 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
599 603 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
600 604 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
601 605 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
602 606 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
603 607 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
604 608 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
605 609 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
606 610 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
607 611 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
608 612 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
609 613 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
610 614 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
611 615 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
612 616 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
613 617 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
614 618 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
615 619 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
616 620 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
629 633 8.894768 AGGCATATTTTAGAGTGTAGATTCAC 57.105 34.615 0.00 0.00 38.46 3.18
637 641 9.712305 GATGTACATAGGCATATTTTAGAGTGT 57.288 33.333 8.71 0.00 0.00 3.55
638 642 9.155975 GGATGTACATAGGCATATTTTAGAGTG 57.844 37.037 8.71 0.00 0.00 3.51
639 643 8.035394 CGGATGTACATAGGCATATTTTAGAGT 58.965 37.037 8.71 0.00 0.00 3.24
640 644 7.010552 GCGGATGTACATAGGCATATTTTAGAG 59.989 40.741 20.09 0.00 0.00 2.43
641 645 6.816640 GCGGATGTACATAGGCATATTTTAGA 59.183 38.462 20.09 0.00 0.00 2.10
642 646 6.593770 TGCGGATGTACATAGGCATATTTTAG 59.406 38.462 22.54 1.21 0.00 1.85
643 647 6.468543 TGCGGATGTACATAGGCATATTTTA 58.531 36.000 22.54 5.28 0.00 1.52
644 648 5.312895 TGCGGATGTACATAGGCATATTTT 58.687 37.500 22.54 0.00 0.00 1.82
645 649 4.905429 TGCGGATGTACATAGGCATATTT 58.095 39.130 22.54 0.00 0.00 1.40
646 650 4.551702 TGCGGATGTACATAGGCATATT 57.448 40.909 22.54 0.00 0.00 1.28
647 651 4.080919 ACATGCGGATGTACATAGGCATAT 60.081 41.667 30.39 23.32 41.27 1.78
648 652 3.260632 ACATGCGGATGTACATAGGCATA 59.739 43.478 30.39 15.28 41.27 3.14
649 653 2.038952 ACATGCGGATGTACATAGGCAT 59.961 45.455 27.69 27.69 41.27 4.40
650 654 1.416030 ACATGCGGATGTACATAGGCA 59.584 47.619 26.27 26.27 41.27 4.75
651 655 1.800586 CACATGCGGATGTACATAGGC 59.199 52.381 22.75 18.82 41.12 3.93
652 656 3.111853 ACACATGCGGATGTACATAGG 57.888 47.619 22.75 11.43 41.12 2.57
653 657 5.289595 ACTAACACATGCGGATGTACATAG 58.710 41.667 22.75 22.70 41.12 2.23
654 658 5.068591 AGACTAACACATGCGGATGTACATA 59.931 40.000 22.75 13.82 41.12 2.29
655 659 4.119862 GACTAACACATGCGGATGTACAT 58.880 43.478 22.75 8.43 41.12 2.29
656 660 3.194755 AGACTAACACATGCGGATGTACA 59.805 43.478 22.75 9.43 41.12 2.90
657 661 3.782046 AGACTAACACATGCGGATGTAC 58.218 45.455 22.75 9.65 41.12 2.90
658 662 5.784578 ATAGACTAACACATGCGGATGTA 57.215 39.130 22.75 6.53 41.12 2.29
659 663 4.672587 ATAGACTAACACATGCGGATGT 57.327 40.909 17.64 17.64 44.08 3.06
660 664 5.991328 AAATAGACTAACACATGCGGATG 57.009 39.130 16.07 16.07 35.49 3.51
661 665 8.500753 TTTTAAATAGACTAACACATGCGGAT 57.499 30.769 0.00 0.00 0.00 4.18
662 666 7.908827 TTTTAAATAGACTAACACATGCGGA 57.091 32.000 0.00 0.00 0.00 5.54
663 667 8.612619 AGATTTTAAATAGACTAACACATGCGG 58.387 33.333 0.00 0.00 0.00 5.69
664 668 9.638300 GAGATTTTAAATAGACTAACACATGCG 57.362 33.333 0.00 0.00 0.00 4.73
695 699 9.804758 CTCTCTCCGTTACTAAATATTTGTCTT 57.195 33.333 11.05 0.00 0.00 3.01
696 700 8.968969 ACTCTCTCCGTTACTAAATATTTGTCT 58.031 33.333 11.05 0.00 0.00 3.41
703 707 8.954350 GGCATATACTCTCTCCGTTACTAAATA 58.046 37.037 0.00 0.00 0.00 1.40
704 708 7.450634 TGGCATATACTCTCTCCGTTACTAAAT 59.549 37.037 0.00 0.00 0.00 1.40
705 709 6.774170 TGGCATATACTCTCTCCGTTACTAAA 59.226 38.462 0.00 0.00 0.00 1.85
706 710 6.301486 TGGCATATACTCTCTCCGTTACTAA 58.699 40.000 0.00 0.00 0.00 2.24
707 711 5.872963 TGGCATATACTCTCTCCGTTACTA 58.127 41.667 0.00 0.00 0.00 1.82
708 712 4.726583 TGGCATATACTCTCTCCGTTACT 58.273 43.478 0.00 0.00 0.00 2.24
709 713 4.616373 GCTGGCATATACTCTCTCCGTTAC 60.616 50.000 0.00 0.00 0.00 2.50
710 714 3.506455 GCTGGCATATACTCTCTCCGTTA 59.494 47.826 0.00 0.00 0.00 3.18
711 715 2.297597 GCTGGCATATACTCTCTCCGTT 59.702 50.000 0.00 0.00 0.00 4.44
712 716 1.889829 GCTGGCATATACTCTCTCCGT 59.110 52.381 0.00 0.00 0.00 4.69
713 717 1.889170 TGCTGGCATATACTCTCTCCG 59.111 52.381 0.00 0.00 0.00 4.63
714 718 2.233431 CCTGCTGGCATATACTCTCTCC 59.767 54.545 0.00 0.00 0.00 3.71
715 719 3.591196 CCTGCTGGCATATACTCTCTC 57.409 52.381 0.00 0.00 0.00 3.20
773 777 5.568825 GCTCACCTGTATGTAAAGACTTCCA 60.569 44.000 0.00 0.00 0.00 3.53
799 803 9.581099 GAGAAAATTTGTTCAAGTTAAAGGTGA 57.419 29.630 0.00 0.00 0.00 4.02
802 806 8.958043 CGAGAGAAAATTTGTTCAAGTTAAAGG 58.042 33.333 0.00 0.00 0.00 3.11
828 832 7.546667 TCCGTGTGTAAATATAGGTGAAAAGAC 59.453 37.037 0.00 0.00 0.00 3.01
849 855 4.002982 TCAATCATTTTCTCCAGTCCGTG 58.997 43.478 0.00 0.00 0.00 4.94
850 856 4.286297 TCAATCATTTTCTCCAGTCCGT 57.714 40.909 0.00 0.00 0.00 4.69
852 858 6.319658 TGCTAATCAATCATTTTCTCCAGTCC 59.680 38.462 0.00 0.00 0.00 3.85
913 920 1.095807 GCCCCAATAGCAACTCCGAC 61.096 60.000 0.00 0.00 0.00 4.79
915 922 1.097547 CAGCCCCAATAGCAACTCCG 61.098 60.000 0.00 0.00 0.00 4.63
940 947 7.571244 TCAGAATGCAATGAAGAACGAAAGTAC 60.571 37.037 0.00 0.00 39.36 2.73
976 983 0.457166 GCCCGCCGGTGTTTAATTTC 60.457 55.000 15.14 0.00 0.00 2.17
1099 1106 1.428912 TGTGGCCTTCTCAATCCCTTT 59.571 47.619 3.32 0.00 0.00 3.11
1103 1110 2.238521 TGTTTGTGGCCTTCTCAATCC 58.761 47.619 3.32 0.18 0.00 3.01
1155 1162 1.318886 TGTAAACCATGCCATGCCCG 61.319 55.000 0.00 0.00 0.00 6.13
1299 1306 5.750524 TCAAGGCAGCAACCATATAGTTTA 58.249 37.500 0.00 0.00 0.00 2.01
1453 1460 7.179872 TGAAGCTATGGAGTGAAGATATGCTAT 59.820 37.037 0.00 0.00 0.00 2.97
1470 1477 7.389232 TGTGGATGATAGGTATTGAAGCTATG 58.611 38.462 1.72 0.00 46.49 2.23
1472 1479 6.782494 TCTGTGGATGATAGGTATTGAAGCTA 59.218 38.462 0.00 0.00 42.20 3.32
1579 1586 5.030147 TGTTGTTACTCCTGACCTATCCAT 58.970 41.667 0.00 0.00 0.00 3.41
1881 1888 1.957877 GGACGATCCTCTCCTGTTAGG 59.042 57.143 0.00 0.00 32.69 2.69
1886 1893 2.725008 GCGGACGATCCTCTCCTG 59.275 66.667 0.00 0.00 33.30 3.86
1903 1910 3.866651 CCAACTCTACTTGTCTCATGGG 58.133 50.000 0.00 0.00 0.00 4.00
1949 1956 7.222999 CCGACACCTTATCTAACATCTTCTTTC 59.777 40.741 0.00 0.00 0.00 2.62
1956 1963 3.181469 TGGCCGACACCTTATCTAACATC 60.181 47.826 0.00 0.00 0.00 3.06
1968 1975 0.243636 CAAATTCCTTGGCCGACACC 59.756 55.000 0.00 0.00 0.00 4.16
1971 1978 1.740025 CTCTCAAATTCCTTGGCCGAC 59.260 52.381 0.00 0.00 35.56 4.79
2041 2048 6.631016 TGCTATATTGTCTTGACGTCTCTTT 58.369 36.000 17.92 0.00 0.00 2.52
2046 2053 5.289595 TCCATGCTATATTGTCTTGACGTC 58.710 41.667 9.11 9.11 0.00 4.34
2047 2054 5.276461 TCCATGCTATATTGTCTTGACGT 57.724 39.130 0.00 0.00 0.00 4.34
2050 2057 5.761726 CAGCTTCCATGCTATATTGTCTTGA 59.238 40.000 0.00 0.00 41.98 3.02
2072 2079 4.827835 TCGAGGATACCTTGAGGATAACAG 59.172 45.833 3.59 0.00 38.98 3.16
2112 2127 6.880529 TCAGAAATTGAGTCTGCATTGTATCA 59.119 34.615 1.40 0.00 41.94 2.15
2115 2130 5.997129 TGTCAGAAATTGAGTCTGCATTGTA 59.003 36.000 1.40 0.00 41.94 2.41
2116 2131 4.823442 TGTCAGAAATTGAGTCTGCATTGT 59.177 37.500 1.40 0.00 41.94 2.71
2117 2132 5.048921 ACTGTCAGAAATTGAGTCTGCATTG 60.049 40.000 6.91 0.00 41.94 2.82
2118 2133 5.068636 ACTGTCAGAAATTGAGTCTGCATT 58.931 37.500 6.91 0.00 41.94 3.56
2120 2135 4.077300 ACTGTCAGAAATTGAGTCTGCA 57.923 40.909 6.91 0.00 41.94 4.41
2121 2136 5.698545 ACTAACTGTCAGAAATTGAGTCTGC 59.301 40.000 6.91 0.00 41.94 4.26
2128 2143 7.141363 CCTTTGGAACTAACTGTCAGAAATTG 58.859 38.462 6.91 0.00 0.00 2.32
2130 2145 6.365520 ACCTTTGGAACTAACTGTCAGAAAT 58.634 36.000 6.91 0.00 0.00 2.17
2182 2197 2.012673 GAGCGAATGAACCAAGAGCAT 58.987 47.619 0.00 0.00 0.00 3.79
2186 2201 3.191162 CCATTTGAGCGAATGAACCAAGA 59.809 43.478 11.18 0.00 38.93 3.02
2198 2213 4.572389 ACATAGCTTCTAACCATTTGAGCG 59.428 41.667 0.00 0.00 0.00 5.03
2212 2227 5.848406 AGGCAATACAGACTACATAGCTTC 58.152 41.667 0.00 0.00 0.00 3.86
2224 2242 2.103373 AGAGCGAGAAGGCAATACAGA 58.897 47.619 0.00 0.00 34.64 3.41
2304 2322 6.459024 GCAGTGTAACCATTGACAACAAGTTA 60.459 38.462 0.00 0.00 37.13 2.24
2411 2431 1.979155 GGCAGGCCCAAAGAAGGTC 60.979 63.158 0.00 0.00 0.00 3.85
2423 2443 1.584380 CTGAAAGCAGAGTGGCAGGC 61.584 60.000 0.00 0.00 45.17 4.85
2429 2449 5.414360 TCAGCTATTACTGAAAGCAGAGTG 58.586 41.667 0.00 0.00 43.59 3.51
2456 2476 0.394080 AGGTCGGTCCTAAGAGGTCG 60.394 60.000 0.00 0.00 46.10 4.79
2470 2490 1.518133 GCTGCTGCAGAGTAGGTCG 60.518 63.158 32.30 4.57 39.41 4.79
2493 2528 5.132897 TGTAAGCACATCAATTTGGTTCC 57.867 39.130 0.00 0.00 35.21 3.62
2496 2531 6.757947 GCATTATGTAAGCACATCAATTTGGT 59.242 34.615 0.00 0.00 44.42 3.67
2518 2553 2.336945 TTCATTCAGAGATGGCGCAT 57.663 45.000 10.83 0.00 0.00 4.73
2520 2555 3.549625 GGAATTTCATTCAGAGATGGCGC 60.550 47.826 0.00 0.00 41.03 6.53
2521 2556 3.881688 AGGAATTTCATTCAGAGATGGCG 59.118 43.478 0.00 0.00 41.03 5.69
2522 2557 8.804912 ATATAGGAATTTCATTCAGAGATGGC 57.195 34.615 0.00 0.00 41.03 4.40
2547 2582 9.717942 AATTGCTATGCAGTGGTAAAAATAAAA 57.282 25.926 0.00 0.00 40.61 1.52
2548 2583 9.364989 GAATTGCTATGCAGTGGTAAAAATAAA 57.635 29.630 0.00 0.00 40.61 1.40
2549 2584 8.748412 AGAATTGCTATGCAGTGGTAAAAATAA 58.252 29.630 0.00 0.00 40.61 1.40
2550 2585 8.292444 AGAATTGCTATGCAGTGGTAAAAATA 57.708 30.769 0.00 0.00 40.61 1.40
2551 2586 7.093814 TGAGAATTGCTATGCAGTGGTAAAAAT 60.094 33.333 0.00 0.00 40.61 1.82
2552 2587 6.208402 TGAGAATTGCTATGCAGTGGTAAAAA 59.792 34.615 0.00 0.00 40.61 1.94
2556 2674 4.162131 TCTGAGAATTGCTATGCAGTGGTA 59.838 41.667 0.00 0.00 40.61 3.25
2562 2680 4.186926 GTGTCTCTGAGAATTGCTATGCA 58.813 43.478 9.31 0.00 36.47 3.96
2570 2688 5.624159 TGAAATGTGGTGTCTCTGAGAATT 58.376 37.500 9.31 1.69 0.00 2.17
2571 2689 5.012458 TCTGAAATGTGGTGTCTCTGAGAAT 59.988 40.000 9.31 0.00 0.00 2.40
2573 2691 3.897505 TCTGAAATGTGGTGTCTCTGAGA 59.102 43.478 2.58 2.58 0.00 3.27
2580 2698 5.947228 TGAGAAATCTGAAATGTGGTGTC 57.053 39.130 0.00 0.00 0.00 3.67
2582 2700 6.552629 CAGATGAGAAATCTGAAATGTGGTG 58.447 40.000 9.28 0.00 46.25 4.17
2583 2701 5.125097 GCAGATGAGAAATCTGAAATGTGGT 59.875 40.000 17.36 0.00 46.25 4.16
2585 2703 6.438259 AGCAGATGAGAAATCTGAAATGTG 57.562 37.500 17.36 0.00 46.25 3.21
2586 2704 7.337167 ACTAGCAGATGAGAAATCTGAAATGT 58.663 34.615 17.36 8.12 46.25 2.71
2627 2754 7.012704 GCAGTGGCTCATCTTTGATTCTATTTA 59.987 37.037 0.00 0.00 36.96 1.40
2637 2770 0.809385 CCTGCAGTGGCTCATCTTTG 59.191 55.000 13.81 0.00 41.91 2.77
2640 2773 0.403271 AAACCTGCAGTGGCTCATCT 59.597 50.000 13.81 0.00 41.91 2.90
2642 2775 0.111061 TGAAACCTGCAGTGGCTCAT 59.889 50.000 13.81 0.00 41.91 2.90
2643 2776 0.106769 TTGAAACCTGCAGTGGCTCA 60.107 50.000 13.81 6.93 41.91 4.26
2670 2809 3.929610 CCTTTCTTCAAGTGAGACGATCC 59.070 47.826 0.00 0.00 0.00 3.36
2675 2814 2.155279 GCCCCTTTCTTCAAGTGAGAC 58.845 52.381 0.00 0.00 0.00 3.36
2677 2816 1.160137 CGCCCCTTTCTTCAAGTGAG 58.840 55.000 0.00 0.00 0.00 3.51
2695 2834 3.554692 GTGGAAGATGCGTCGGCG 61.555 66.667 4.29 4.29 44.10 6.46
2696 2835 3.554692 CGTGGAAGATGCGTCGGC 61.555 66.667 0.00 0.00 40.52 5.54
2697 2836 2.885644 CCGTGGAAGATGCGTCGG 60.886 66.667 0.00 0.00 0.00 4.79
2699 2838 2.125512 AGCCGTGGAAGATGCGTC 60.126 61.111 0.00 0.00 0.00 5.19
2700 2839 2.434884 CAGCCGTGGAAGATGCGT 60.435 61.111 0.00 0.00 0.00 5.24
2701 2840 3.869272 GCAGCCGTGGAAGATGCG 61.869 66.667 0.00 0.00 0.00 4.73
2704 2965 2.125512 GTCGCAGCCGTGGAAGAT 60.126 61.111 0.00 0.00 35.54 2.40
2706 2967 2.811317 GAGTCGCAGCCGTGGAAG 60.811 66.667 0.00 0.00 35.54 3.46
2713 2974 1.520342 GGATGACAGAGTCGCAGCC 60.520 63.158 2.98 2.98 34.95 4.85
2714 2975 1.875813 CGGATGACAGAGTCGCAGC 60.876 63.158 0.00 0.00 34.95 5.25
2716 2977 1.212751 CACGGATGACAGAGTCGCA 59.787 57.895 0.00 0.00 34.95 5.10
2717 2978 2.161486 GCACGGATGACAGAGTCGC 61.161 63.158 0.00 0.00 34.95 5.19
2733 2994 0.830444 ACTTGTCTACTCCACCGGCA 60.830 55.000 0.00 0.00 0.00 5.69
2734 2995 0.320697 AACTTGTCTACTCCACCGGC 59.679 55.000 0.00 0.00 0.00 6.13
2737 2998 3.260884 TCATCCAACTTGTCTACTCCACC 59.739 47.826 0.00 0.00 0.00 4.61
2738 2999 4.021016 AGTCATCCAACTTGTCTACTCCAC 60.021 45.833 0.00 0.00 0.00 4.02
2742 3003 4.160329 TCCAGTCATCCAACTTGTCTACT 58.840 43.478 0.00 0.00 0.00 2.57
2743 3004 4.537135 TCCAGTCATCCAACTTGTCTAC 57.463 45.455 0.00 0.00 0.00 2.59
2744 3005 4.080919 CCATCCAGTCATCCAACTTGTCTA 60.081 45.833 0.00 0.00 0.00 2.59
2745 3006 3.307975 CCATCCAGTCATCCAACTTGTCT 60.308 47.826 0.00 0.00 0.00 3.41
2746 3007 3.012518 CCATCCAGTCATCCAACTTGTC 58.987 50.000 0.00 0.00 0.00 3.18
2747 3008 2.376518 ACCATCCAGTCATCCAACTTGT 59.623 45.455 0.00 0.00 0.00 3.16
2748 3009 3.012518 GACCATCCAGTCATCCAACTTG 58.987 50.000 0.00 0.00 36.73 3.16
2749 3010 2.355108 CGACCATCCAGTCATCCAACTT 60.355 50.000 0.00 0.00 36.52 2.66
2750 3011 1.208052 CGACCATCCAGTCATCCAACT 59.792 52.381 0.00 0.00 36.52 3.16
2753 3014 0.977627 AGCGACCATCCAGTCATCCA 60.978 55.000 0.00 0.00 36.52 3.41
2754 3015 1.000283 CTAGCGACCATCCAGTCATCC 60.000 57.143 0.00 0.00 36.52 3.51
2755 3016 1.604185 GCTAGCGACCATCCAGTCATC 60.604 57.143 0.00 0.00 36.52 2.92
2756 3017 0.390860 GCTAGCGACCATCCAGTCAT 59.609 55.000 0.00 0.00 36.52 3.06
2758 3019 1.068250 GGCTAGCGACCATCCAGTC 59.932 63.158 9.00 0.00 0.00 3.51
2759 3020 2.786495 CGGCTAGCGACCATCCAGT 61.786 63.158 9.00 0.00 0.00 4.00
2761 3022 2.758327 ACGGCTAGCGACCATCCA 60.758 61.111 9.00 0.00 0.00 3.41
2762 3023 2.279517 CACGGCTAGCGACCATCC 60.280 66.667 9.00 0.00 0.00 3.51
2765 3026 4.111016 CGACACGGCTAGCGACCA 62.111 66.667 9.00 0.00 0.00 4.02
2766 3027 3.736482 CTCGACACGGCTAGCGACC 62.736 68.421 9.00 0.00 0.00 4.79
2767 3028 2.277373 CTCGACACGGCTAGCGAC 60.277 66.667 9.00 0.00 0.00 5.19
2768 3029 3.506096 CCTCGACACGGCTAGCGA 61.506 66.667 9.00 0.00 0.00 4.93
2772 3033 3.138798 GCCTCCTCGACACGGCTA 61.139 66.667 6.81 0.00 39.42 3.93
2794 3408 4.351054 AAGGACCTTGCCCCGCAG 62.351 66.667 5.76 0.00 40.61 5.18
2796 3410 3.645268 ATCAAGGACCTTGCCCCGC 62.645 63.158 26.79 0.00 40.84 6.13
2797 3411 1.452108 GATCAAGGACCTTGCCCCG 60.452 63.158 26.79 5.79 40.84 5.73
2799 3413 1.026718 CACGATCAAGGACCTTGCCC 61.027 60.000 26.79 18.94 40.84 5.36
2801 3415 1.464997 GAACACGATCAAGGACCTTGC 59.535 52.381 26.79 14.31 40.84 4.01
2803 3417 3.007940 TGATGAACACGATCAAGGACCTT 59.992 43.478 0.00 0.00 32.06 3.50
2805 3419 2.972625 TGATGAACACGATCAAGGACC 58.027 47.619 0.00 0.00 32.06 4.46
2807 3421 6.573664 AAAAATGATGAACACGATCAAGGA 57.426 33.333 0.00 0.00 33.59 3.36
2808 3422 8.915871 AATAAAAATGATGAACACGATCAAGG 57.084 30.769 0.00 0.00 33.59 3.61
2836 3450 9.530633 AAACGCGATCTAGTCTAGATTAAAAAT 57.469 29.630 20.94 6.96 45.16 1.82
2837 3451 8.804743 CAAACGCGATCTAGTCTAGATTAAAAA 58.195 33.333 20.94 0.00 45.16 1.94
2838 3452 7.972277 ACAAACGCGATCTAGTCTAGATTAAAA 59.028 33.333 20.94 0.00 45.16 1.52
2839 3453 7.478322 ACAAACGCGATCTAGTCTAGATTAAA 58.522 34.615 20.94 0.00 45.16 1.52
2840 3454 7.024340 ACAAACGCGATCTAGTCTAGATTAA 57.976 36.000 20.94 0.00 45.16 1.40
2841 3455 6.259387 TGACAAACGCGATCTAGTCTAGATTA 59.741 38.462 20.94 0.00 45.16 1.75
2842 3456 5.066117 TGACAAACGCGATCTAGTCTAGATT 59.934 40.000 20.94 5.51 45.16 2.40
2844 3458 3.937079 TGACAAACGCGATCTAGTCTAGA 59.063 43.478 15.93 12.02 39.50 2.43
2845 3459 4.274421 TGACAAACGCGATCTAGTCTAG 57.726 45.455 15.93 0.00 0.00 2.43
2846 3460 4.261072 GGATGACAAACGCGATCTAGTCTA 60.261 45.833 15.93 5.09 0.00 2.59
2847 3461 3.489398 GGATGACAAACGCGATCTAGTCT 60.489 47.826 15.93 3.77 0.00 3.24
2848 3462 2.789893 GGATGACAAACGCGATCTAGTC 59.210 50.000 15.93 13.51 0.00 2.59
2849 3463 2.794981 CGGATGACAAACGCGATCTAGT 60.795 50.000 15.93 3.30 0.00 2.57
2850 3464 1.781429 CGGATGACAAACGCGATCTAG 59.219 52.381 15.93 0.00 0.00 2.43
2851 3465 1.835121 CGGATGACAAACGCGATCTA 58.165 50.000 15.93 0.00 0.00 1.98
2862 3476 0.614697 TCTTCCCTCTGCGGATGACA 60.615 55.000 0.00 0.00 32.62 3.58
2869 3483 0.457851 AAGTCGATCTTCCCTCTGCG 59.542 55.000 0.00 0.00 0.00 5.18
2875 3489 0.107654 CCCACCAAGTCGATCTTCCC 60.108 60.000 0.00 0.00 33.63 3.97
2883 3500 0.744281 AACAAAAGCCCACCAAGTCG 59.256 50.000 0.00 0.00 0.00 4.18
2885 3502 3.070878 CCAATAACAAAAGCCCACCAAGT 59.929 43.478 0.00 0.00 0.00 3.16
2938 3555 9.051679 CCATCGGTATTTGTCTGTTTATTATCA 57.948 33.333 0.00 0.00 0.00 2.15
2939 3556 9.268268 TCCATCGGTATTTGTCTGTTTATTATC 57.732 33.333 0.00 0.00 0.00 1.75
2940 3557 9.273016 CTCCATCGGTATTTGTCTGTTTATTAT 57.727 33.333 0.00 0.00 0.00 1.28
2941 3558 8.262227 ACTCCATCGGTATTTGTCTGTTTATTA 58.738 33.333 0.00 0.00 0.00 0.98
2942 3559 7.110155 ACTCCATCGGTATTTGTCTGTTTATT 58.890 34.615 0.00 0.00 0.00 1.40
2952 3569 2.159156 TCCGTGACTCCATCGGTATTTG 60.159 50.000 0.00 0.00 43.94 2.32
2987 3604 1.648467 GGGTTCGCCATCTGCACTTC 61.648 60.000 0.00 0.00 41.33 3.01
3004 3621 2.280389 CATCTCGGCGTGATGGGG 60.280 66.667 32.87 15.95 38.04 4.96
3088 3705 0.393808 TGGGCAGCCGGTAAAGAATC 60.394 55.000 5.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.