Multiple sequence alignment - TraesCS1B01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G089400 chr1B 100.000 2333 0 0 1 2333 89959872 89962204 0.000000e+00 4309
1 TraesCS1B01G089400 chr1B 100.000 599 0 0 2601 3199 89962472 89963070 0.000000e+00 1107
2 TraesCS1B01G089400 chr1B 77.414 1253 241 26 853 2089 90205137 90206363 0.000000e+00 708
3 TraesCS1B01G089400 chr1B 88.043 92 10 1 2613 2704 89962606 89962696 1.210000e-19 108
4 TraesCS1B01G089400 chr1A 92.694 1095 78 2 996 2089 53654311 53655404 0.000000e+00 1578
5 TraesCS1B01G089400 chr1A 80.538 1079 191 12 1019 2089 53471759 53472826 0.000000e+00 811
6 TraesCS1B01G089400 chr1A 78.768 1234 226 25 869 2089 53656936 53658146 0.000000e+00 795
7 TraesCS1B01G089400 chr1A 77.355 1051 198 23 1051 2089 53509448 53510470 1.280000e-163 586
8 TraesCS1B01G089400 chr1A 90.000 80 7 1 2073 2151 53655421 53655500 5.650000e-18 102
9 TraesCS1B01G089400 chrUn 89.988 839 77 3 1 837 110779508 110780341 0.000000e+00 1077
10 TraesCS1B01G089400 chrUn 81.357 1105 182 17 997 2089 3946381 3947473 0.000000e+00 878
11 TraesCS1B01G089400 chrUn 81.357 1105 182 17 997 2089 284396414 284397506 0.000000e+00 878
12 TraesCS1B01G089400 chr6A 89.543 832 78 5 2 831 2044139 2044963 0.000000e+00 1046
13 TraesCS1B01G089400 chr6A 91.892 74 4 2 2259 2331 569589040 569588968 5.650000e-18 102
14 TraesCS1B01G089400 chr1D 89.684 824 79 2 16 838 191379006 191378188 0.000000e+00 1046
15 TraesCS1B01G089400 chr1D 77.798 1108 216 21 1000 2089 54196011 54197106 0.000000e+00 656
16 TraesCS1B01G089400 chr1D 85.169 472 44 16 2738 3187 77346493 77346960 8.090000e-126 460
17 TraesCS1B01G089400 chr1D 81.462 383 51 10 1000 1378 54017221 54017587 2.410000e-76 296
18 TraesCS1B01G089400 chr1D 86.735 98 12 1 2607 2704 61382979 61383075 1.210000e-19 108
19 TraesCS1B01G089400 chr1D 92.958 71 5 0 2261 2331 58486384 58486314 1.570000e-18 104
20 TraesCS1B01G089400 chr6D 89.286 840 80 5 1 837 30533728 30534560 0.000000e+00 1044
21 TraesCS1B01G089400 chr6D 89.711 622 32 12 2607 3199 422228853 422229471 0.000000e+00 765
22 TraesCS1B01G089400 chr6D 93.478 92 5 1 2613 2704 422229009 422229099 5.570000e-28 135
23 TraesCS1B01G089400 chr6D 88.235 85 10 0 2607 2691 292058957 292058873 5.650000e-18 102
24 TraesCS1B01G089400 chr5D 89.128 837 85 2 2 837 376719263 376720094 0.000000e+00 1037
25 TraesCS1B01G089400 chr3B 89.290 831 83 2 1 830 764782578 764783403 0.000000e+00 1037
26 TraesCS1B01G089400 chr3B 87.896 347 33 8 2738 3079 13990177 13989835 1.790000e-107 399
27 TraesCS1B01G089400 chr3B 85.455 330 21 10 2873 3199 722584156 722583851 5.150000e-83 318
28 TraesCS1B01G089400 chr6B 89.222 835 81 5 8 839 57716717 57715889 0.000000e+00 1035
29 TraesCS1B01G089400 chr6B 83.158 475 49 19 2738 3187 420670199 420670667 3.840000e-109 405
30 TraesCS1B01G089400 chr4A 89.035 839 86 2 1 838 729537589 729536756 0.000000e+00 1035
31 TraesCS1B01G089400 chr4A 90.000 130 11 2 3072 3199 660870276 660870147 1.970000e-37 167
32 TraesCS1B01G089400 chr7A 89.062 832 85 2 1 831 682327122 682327948 0.000000e+00 1027
33 TraesCS1B01G089400 chr5B 93.696 349 12 6 2856 3199 469494286 469494629 6.120000e-142 514
34 TraesCS1B01G089400 chr5B 76.307 612 132 11 1487 2089 57498220 57497613 6.660000e-82 315
35 TraesCS1B01G089400 chr7B 90.741 378 28 6 2735 3110 447333422 447333050 6.160000e-137 497
36 TraesCS1B01G089400 chr2B 90.716 377 29 4 2735 3110 407992286 407991915 6.160000e-137 497
37 TraesCS1B01G089400 chr2B 87.129 101 12 1 2607 2707 407992292 407992193 2.610000e-21 113
38 TraesCS1B01G089400 chr3D 85.895 475 41 15 2735 3187 263229131 263229601 1.730000e-132 483
39 TraesCS1B01G089400 chr3D 85.577 104 12 3 2607 2708 263229125 263229227 4.360000e-19 106
40 TraesCS1B01G089400 chr2D 89.286 336 24 8 2735 3065 343540795 343541123 8.260000e-111 411
41 TraesCS1B01G089400 chr2D 90.909 88 8 0 3112 3199 296535623 296535536 5.610000e-23 119
42 TraesCS1B01G089400 chr2D 85.859 99 13 1 2606 2704 343540788 343540885 1.570000e-18 104
43 TraesCS1B01G089400 chr3A 88.529 340 32 7 2746 3081 623885023 623885359 3.840000e-109 405
44 TraesCS1B01G089400 chr4D 91.860 86 7 0 3114 3199 497397133 497397048 1.560000e-23 121
45 TraesCS1B01G089400 chr4D 85.149 101 12 3 2610 2708 47154596 47154695 2.030000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G089400 chr1B 89959872 89963070 3198 False 1841.333333 4309 96.014333 1 3199 3 chr1B.!!$F2 3198
1 TraesCS1B01G089400 chr1B 90205137 90206363 1226 False 708.000000 708 77.414000 853 2089 1 chr1B.!!$F1 1236
2 TraesCS1B01G089400 chr1A 53654311 53658146 3835 False 825.000000 1578 87.154000 869 2151 3 chr1A.!!$F3 1282
3 TraesCS1B01G089400 chr1A 53471759 53472826 1067 False 811.000000 811 80.538000 1019 2089 1 chr1A.!!$F1 1070
4 TraesCS1B01G089400 chr1A 53509448 53510470 1022 False 586.000000 586 77.355000 1051 2089 1 chr1A.!!$F2 1038
5 TraesCS1B01G089400 chrUn 110779508 110780341 833 False 1077.000000 1077 89.988000 1 837 1 chrUn.!!$F2 836
6 TraesCS1B01G089400 chrUn 3946381 3947473 1092 False 878.000000 878 81.357000 997 2089 1 chrUn.!!$F1 1092
7 TraesCS1B01G089400 chrUn 284396414 284397506 1092 False 878.000000 878 81.357000 997 2089 1 chrUn.!!$F3 1092
8 TraesCS1B01G089400 chr6A 2044139 2044963 824 False 1046.000000 1046 89.543000 2 831 1 chr6A.!!$F1 829
9 TraesCS1B01G089400 chr1D 191378188 191379006 818 True 1046.000000 1046 89.684000 16 838 1 chr1D.!!$R2 822
10 TraesCS1B01G089400 chr1D 54196011 54197106 1095 False 656.000000 656 77.798000 1000 2089 1 chr1D.!!$F2 1089
11 TraesCS1B01G089400 chr6D 30533728 30534560 832 False 1044.000000 1044 89.286000 1 837 1 chr6D.!!$F1 836
12 TraesCS1B01G089400 chr6D 422228853 422229471 618 False 450.000000 765 91.594500 2607 3199 2 chr6D.!!$F2 592
13 TraesCS1B01G089400 chr5D 376719263 376720094 831 False 1037.000000 1037 89.128000 2 837 1 chr5D.!!$F1 835
14 TraesCS1B01G089400 chr3B 764782578 764783403 825 False 1037.000000 1037 89.290000 1 830 1 chr3B.!!$F1 829
15 TraesCS1B01G089400 chr6B 57715889 57716717 828 True 1035.000000 1035 89.222000 8 839 1 chr6B.!!$R1 831
16 TraesCS1B01G089400 chr4A 729536756 729537589 833 True 1035.000000 1035 89.035000 1 838 1 chr4A.!!$R2 837
17 TraesCS1B01G089400 chr7A 682327122 682327948 826 False 1027.000000 1027 89.062000 1 831 1 chr7A.!!$F1 830
18 TraesCS1B01G089400 chr5B 57497613 57498220 607 True 315.000000 315 76.307000 1487 2089 1 chr5B.!!$R1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 612 0.104356 TGTCTTCCCCCTGGTACCAA 60.104 55.0 17.11 0.0 0.00 3.67 F
981 988 0.255890 TTCCATTGGAGTGCCTAGCC 59.744 55.0 5.36 0.0 31.21 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2019 0.035152 TCACTTGCCATCATCGCCTT 60.035 50.0 0.0 0.0 0.0 4.35 R
2218 5005 0.037590 ATGAGCTAACGCCAAACCCA 59.962 50.0 0.0 0.0 36.6 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.117584 TGAAGCACCGTTCAGTTAAGTTTA 58.882 37.500 0.00 0.00 32.54 2.01
26 27 5.761234 TGAAGCACCGTTCAGTTAAGTTTAT 59.239 36.000 0.00 0.00 32.54 1.40
32 33 7.442657 CACCGTTCAGTTAAGTTTATACGAAG 58.557 38.462 0.00 0.00 0.00 3.79
43 44 5.539048 AGTTTATACGAAGCTTGACACACT 58.461 37.500 2.10 0.00 0.00 3.55
55 56 4.142600 GCTTGACACACTGAGACAGTTTTT 60.143 41.667 1.46 0.00 42.59 1.94
102 103 3.692406 GGGCGTTGGAGAGGTCGT 61.692 66.667 0.00 0.00 0.00 4.34
157 159 2.218603 CTGTGTGGGCGAACTAGTTTT 58.781 47.619 10.02 0.00 0.00 2.43
165 167 1.662026 GCGAACTAGTTTTTGCCCACG 60.662 52.381 10.02 7.11 30.55 4.94
239 242 4.242475 GACAGTCATACGTTGTTGGATGA 58.758 43.478 0.00 0.00 0.00 2.92
351 355 5.356751 GTGGCAATCAGGTAAACATACATGA 59.643 40.000 0.00 5.90 43.51 3.07
416 422 9.415008 ACATGGCAACTATTGTTTAACCATATA 57.585 29.630 14.44 0.00 38.59 0.86
531 537 4.006319 GAGAGAGTTGCCATGCTTTTACT 58.994 43.478 0.00 0.00 0.00 2.24
533 539 5.749462 AGAGAGTTGCCATGCTTTTACTAT 58.251 37.500 0.00 0.00 0.00 2.12
572 578 1.496060 AACTACATCTGCCATCCCGA 58.504 50.000 0.00 0.00 0.00 5.14
586 592 4.261801 CCATCCCGAATGACAACTAAACT 58.738 43.478 0.00 0.00 37.59 2.66
590 596 4.039973 TCCCGAATGACAACTAAACTGTCT 59.960 41.667 4.74 0.00 43.03 3.41
595 601 4.081322 TGACAACTAAACTGTCTTCCCC 57.919 45.455 4.74 0.00 43.03 4.81
597 603 3.053826 ACAACTAAACTGTCTTCCCCCT 58.946 45.455 0.00 0.00 0.00 4.79
604 610 0.546747 CTGTCTTCCCCCTGGTACCA 60.547 60.000 15.39 15.39 0.00 3.25
605 612 0.104356 TGTCTTCCCCCTGGTACCAA 60.104 55.000 17.11 0.00 0.00 3.67
623 630 1.539388 CAATTGTAGTTGCGCCAGGAA 59.461 47.619 4.18 0.00 0.00 3.36
691 698 0.955905 GTATTTGTTGGGCGTGTGGT 59.044 50.000 0.00 0.00 0.00 4.16
693 700 1.917872 ATTTGTTGGGCGTGTGGTAT 58.082 45.000 0.00 0.00 0.00 2.73
733 740 4.272504 CACGTGTGGACAATTCTACTGTTT 59.727 41.667 7.58 0.00 34.36 2.83
748 755 2.127232 GTTTGCCCACACACAGCCT 61.127 57.895 0.00 0.00 0.00 4.58
839 846 3.635373 TGTAGTGGATATCGGTGTCCTTC 59.365 47.826 13.11 6.13 36.63 3.46
840 847 3.033659 AGTGGATATCGGTGTCCTTCT 57.966 47.619 13.11 8.24 36.63 2.85
841 848 3.375699 AGTGGATATCGGTGTCCTTCTT 58.624 45.455 13.11 0.00 36.63 2.52
842 849 4.543689 AGTGGATATCGGTGTCCTTCTTA 58.456 43.478 13.11 0.00 36.63 2.10
843 850 5.148502 AGTGGATATCGGTGTCCTTCTTAT 58.851 41.667 13.11 0.00 36.63 1.73
844 851 6.312529 AGTGGATATCGGTGTCCTTCTTATA 58.687 40.000 13.11 0.00 36.63 0.98
845 852 6.954684 AGTGGATATCGGTGTCCTTCTTATAT 59.045 38.462 13.11 0.00 36.63 0.86
846 853 7.122948 AGTGGATATCGGTGTCCTTCTTATATC 59.877 40.741 13.11 0.00 36.63 1.63
847 854 6.095021 TGGATATCGGTGTCCTTCTTATATCG 59.905 42.308 13.11 0.00 36.63 2.92
848 855 6.095160 GGATATCGGTGTCCTTCTTATATCGT 59.905 42.308 3.85 0.00 33.16 3.73
849 856 5.786264 ATCGGTGTCCTTCTTATATCGTT 57.214 39.130 0.00 0.00 0.00 3.85
850 857 5.179045 TCGGTGTCCTTCTTATATCGTTC 57.821 43.478 0.00 0.00 0.00 3.95
851 858 4.037208 TCGGTGTCCTTCTTATATCGTTCC 59.963 45.833 0.00 0.00 0.00 3.62
861 868 6.413783 TCTTATATCGTTCCTTGGCATGTA 57.586 37.500 0.00 0.00 0.00 2.29
862 869 6.455647 TCTTATATCGTTCCTTGGCATGTAG 58.544 40.000 0.00 0.00 0.00 2.74
863 870 4.689612 ATATCGTTCCTTGGCATGTAGT 57.310 40.909 0.00 0.00 0.00 2.73
864 871 2.380084 TCGTTCCTTGGCATGTAGTC 57.620 50.000 0.00 0.00 0.00 2.59
865 872 1.066430 TCGTTCCTTGGCATGTAGTCC 60.066 52.381 0.00 0.00 0.00 3.85
875 882 4.420206 TGGCATGTAGTCCTATATCTGCT 58.580 43.478 0.00 0.00 0.00 4.24
876 883 4.464244 TGGCATGTAGTCCTATATCTGCTC 59.536 45.833 0.00 0.00 0.00 4.26
879 886 6.098679 GCATGTAGTCCTATATCTGCTCTTG 58.901 44.000 0.00 0.00 0.00 3.02
892 899 2.079158 TGCTCTTGATTTGCTTCGAGG 58.921 47.619 0.00 0.00 0.00 4.63
897 904 2.408271 TGATTTGCTTCGAGGCAGAT 57.592 45.000 22.94 22.94 43.39 2.90
906 913 2.209838 TCGAGGCAGATCGATCAAAC 57.790 50.000 26.47 15.18 46.20 2.93
907 914 1.751351 TCGAGGCAGATCGATCAAACT 59.249 47.619 26.47 19.29 46.20 2.66
908 915 2.166459 TCGAGGCAGATCGATCAAACTT 59.834 45.455 26.47 11.80 46.20 2.66
909 916 2.537625 CGAGGCAGATCGATCAAACTTC 59.462 50.000 26.47 17.98 45.56 3.01
910 917 2.869192 GAGGCAGATCGATCAAACTTCC 59.131 50.000 26.47 16.09 0.00 3.46
911 918 1.943340 GGCAGATCGATCAAACTTCCC 59.057 52.381 26.47 11.51 0.00 3.97
914 921 3.599343 CAGATCGATCAAACTTCCCACA 58.401 45.455 26.47 0.00 0.00 4.17
921 928 1.496857 TCAAACTTCCCACATCCCACA 59.503 47.619 0.00 0.00 0.00 4.17
925 932 2.344592 ACTTCCCACATCCCACAGTAA 58.655 47.619 0.00 0.00 0.00 2.24
932 939 8.513139 TTCCCACATCCCACAGTAATATATAA 57.487 34.615 0.00 0.00 0.00 0.98
936 943 7.876068 CCACATCCCACAGTAATATATAAACGT 59.124 37.037 0.00 0.00 0.00 3.99
949 956 5.834239 ATATAAACGTAGGGAATTTCGCG 57.166 39.130 0.00 0.00 34.19 5.87
954 961 1.461897 CGTAGGGAATTTCGCGTTGTT 59.538 47.619 5.77 0.00 34.19 2.83
958 965 0.318275 GGAATTTCGCGTTGTTGCCA 60.318 50.000 5.77 0.00 0.00 4.92
959 966 1.482278 GAATTTCGCGTTGTTGCCAA 58.518 45.000 5.77 0.00 0.00 4.52
968 975 2.610232 GCGTTGTTGCCAATCTTCCATT 60.610 45.455 0.00 0.00 32.11 3.16
977 984 2.731572 CAATCTTCCATTGGAGTGCCT 58.268 47.619 5.36 0.00 31.21 4.75
978 985 3.889815 CAATCTTCCATTGGAGTGCCTA 58.110 45.455 5.36 0.00 31.21 3.93
979 986 3.853355 ATCTTCCATTGGAGTGCCTAG 57.147 47.619 5.36 0.00 31.21 3.02
981 988 0.255890 TTCCATTGGAGTGCCTAGCC 59.744 55.000 5.36 0.00 31.21 3.93
982 989 1.152881 CCATTGGAGTGCCTAGCCC 60.153 63.158 0.00 0.00 34.31 5.19
983 990 1.609239 CATTGGAGTGCCTAGCCCA 59.391 57.895 0.00 0.00 34.31 5.36
984 991 0.749454 CATTGGAGTGCCTAGCCCAC 60.749 60.000 4.17 4.17 34.31 4.61
985 992 1.926426 ATTGGAGTGCCTAGCCCACC 61.926 60.000 7.81 0.00 33.75 4.61
987 994 2.602676 GGAGTGCCTAGCCCACCAA 61.603 63.158 7.81 0.00 33.75 3.67
988 995 1.377333 GAGTGCCTAGCCCACCAAC 60.377 63.158 7.81 0.00 33.75 3.77
992 999 1.228429 GCCTAGCCCACCAACACAA 60.228 57.895 0.00 0.00 0.00 3.33
993 1000 0.611896 GCCTAGCCCACCAACACAAT 60.612 55.000 0.00 0.00 0.00 2.71
994 1001 1.923356 CCTAGCCCACCAACACAATT 58.077 50.000 0.00 0.00 0.00 2.32
995 1002 2.882229 GCCTAGCCCACCAACACAATTA 60.882 50.000 0.00 0.00 0.00 1.40
998 1005 1.960689 AGCCCACCAACACAATTACAC 59.039 47.619 0.00 0.00 0.00 2.90
1015 1022 2.241160 ACACAATGGCAGAGATTTGCA 58.759 42.857 0.00 0.00 45.86 4.08
1037 1044 1.630369 TCTTCCTGCTGCCAATGTAGT 59.370 47.619 0.00 0.00 0.00 2.73
1045 1052 2.611292 GCTGCCAATGTAGTGTCATCTC 59.389 50.000 0.00 0.00 0.00 2.75
1100 1107 2.097825 CTCCAGAATCAAGGGGCAAAG 58.902 52.381 0.00 0.00 0.00 2.77
1116 1123 2.477863 GCAAAGCGAGCGTGGAAAATAT 60.478 45.455 0.00 0.00 0.00 1.28
1214 1227 4.924305 AGTACGAAGCCGGTTTCATATA 57.076 40.909 27.64 15.12 40.78 0.86
1286 1305 9.927668 CAATGTTGGATTTAGTTTGTTTCCTAT 57.072 29.630 0.00 0.00 0.00 2.57
1293 1312 8.040727 GGATTTAGTTTGTTTCCTATTGGCAAT 58.959 33.333 18.01 18.01 0.00 3.56
1298 1317 4.046286 TGTTTCCTATTGGCAATGAGGT 57.954 40.909 22.57 0.00 0.00 3.85
1327 1346 4.570772 CAGTGGGTTCATATAACAAGACCG 59.429 45.833 0.00 0.00 0.00 4.79
1390 1412 8.784043 GTTTCTCTAACTTTATCAAGAAGGCAA 58.216 33.333 0.00 0.00 33.79 4.52
1469 1492 1.732259 GTCGTGAAGTATGGCCACAAG 59.268 52.381 8.16 3.33 0.00 3.16
1537 1563 3.280295 TCGGTGAGCTCCTAAAGAGTAG 58.720 50.000 12.15 0.00 45.21 2.57
1746 1779 0.608640 AGACTCACCACCCATTCGTC 59.391 55.000 0.00 0.00 0.00 4.20
1760 1805 3.273434 CATTCGTCTGATGACCAATGGT 58.727 45.455 3.74 3.74 43.35 3.55
1784 1829 0.737715 AAGCACGAAGAGATGCGGTC 60.738 55.000 0.00 0.00 46.74 4.79
1807 1852 1.614317 GGCTGGCCATCTACTTGTTGT 60.614 52.381 5.51 0.00 35.81 3.32
1821 1866 5.228945 ACTTGTTGTAGCTGACAGGTATT 57.771 39.130 16.91 0.00 39.88 1.89
1842 1887 1.701847 ACATTGAGAGGCTGAAGGTGT 59.298 47.619 0.00 0.00 0.00 4.16
1869 1914 4.094146 GTGAAGAGAAGTTATGCAAGCTCC 59.906 45.833 0.00 0.00 0.00 4.70
1974 2019 3.753272 CCTCGCTTCTCTTTCCAATTTGA 59.247 43.478 0.00 0.00 0.00 2.69
2047 4834 1.141657 TGTTCTCAAAGAGCTGGCTGT 59.858 47.619 0.00 0.00 0.00 4.40
2090 4877 4.801891 TGAAAGCAGTCAAAGATCATTGC 58.198 39.130 5.80 0.00 0.00 3.56
2091 4878 4.278919 TGAAAGCAGTCAAAGATCATTGCA 59.721 37.500 5.80 0.00 34.17 4.08
2092 4879 5.047590 TGAAAGCAGTCAAAGATCATTGCAT 60.048 36.000 5.80 0.00 34.17 3.96
2093 4880 4.634184 AGCAGTCAAAGATCATTGCATC 57.366 40.909 5.80 0.21 34.17 3.91
2094 4881 4.270834 AGCAGTCAAAGATCATTGCATCT 58.729 39.130 5.80 2.31 34.34 2.90
2095 4882 4.705507 AGCAGTCAAAGATCATTGCATCTT 59.294 37.500 5.80 0.00 43.70 2.40
2096 4883 5.884232 AGCAGTCAAAGATCATTGCATCTTA 59.116 36.000 5.80 0.00 41.45 2.10
2097 4884 6.546403 AGCAGTCAAAGATCATTGCATCTTAT 59.454 34.615 5.80 0.00 41.45 1.73
2098 4885 6.856938 GCAGTCAAAGATCATTGCATCTTATC 59.143 38.462 5.80 0.00 41.45 1.75
2099 4886 7.255173 GCAGTCAAAGATCATTGCATCTTATCT 60.255 37.037 5.80 0.00 41.45 1.98
2100 4887 9.269453 CAGTCAAAGATCATTGCATCTTATCTA 57.731 33.333 5.80 0.00 41.45 1.98
2129 4916 9.990868 TTAGTATCCATATCTTCTACCATAGCA 57.009 33.333 0.00 0.00 0.00 3.49
2130 4917 8.901472 AGTATCCATATCTTCTACCATAGCAA 57.099 34.615 0.00 0.00 0.00 3.91
2131 4918 8.754080 AGTATCCATATCTTCTACCATAGCAAC 58.246 37.037 0.00 0.00 0.00 4.17
2132 4919 7.805083 ATCCATATCTTCTACCATAGCAACT 57.195 36.000 0.00 0.00 0.00 3.16
2133 4920 6.997655 TCCATATCTTCTACCATAGCAACTG 58.002 40.000 0.00 0.00 0.00 3.16
2134 4921 5.641209 CCATATCTTCTACCATAGCAACTGC 59.359 44.000 0.00 0.00 42.49 4.40
2135 4922 4.760530 ATCTTCTACCATAGCAACTGCA 57.239 40.909 4.22 0.00 45.16 4.41
2136 4923 4.551702 TCTTCTACCATAGCAACTGCAA 57.448 40.909 4.22 0.00 45.16 4.08
2137 4924 4.905429 TCTTCTACCATAGCAACTGCAAA 58.095 39.130 4.22 0.00 45.16 3.68
2138 4925 5.312895 TCTTCTACCATAGCAACTGCAAAA 58.687 37.500 4.22 0.00 45.16 2.44
2139 4926 5.412594 TCTTCTACCATAGCAACTGCAAAAG 59.587 40.000 4.22 0.00 45.16 2.27
2140 4927 4.651778 TCTACCATAGCAACTGCAAAAGT 58.348 39.130 4.22 0.00 45.16 2.66
2141 4928 3.648339 ACCATAGCAACTGCAAAAGTG 57.352 42.857 4.22 0.00 45.16 3.16
2218 5005 8.903059 ATATAAGGGATCTCTCCGTAAAATCT 57.097 34.615 0.00 0.00 43.11 2.40
2219 5006 4.946478 AGGGATCTCTCCGTAAAATCTG 57.054 45.455 0.00 0.00 43.11 2.90
2220 5007 3.643792 AGGGATCTCTCCGTAAAATCTGG 59.356 47.826 0.00 0.00 43.11 3.86
2221 5008 3.244249 GGGATCTCTCCGTAAAATCTGGG 60.244 52.174 0.00 0.00 43.11 4.45
2222 5009 3.388350 GGATCTCTCCGTAAAATCTGGGT 59.612 47.826 0.00 0.00 0.00 4.51
2223 5010 4.141688 GGATCTCTCCGTAAAATCTGGGTT 60.142 45.833 0.00 0.00 0.00 4.11
2224 5011 4.903045 TCTCTCCGTAAAATCTGGGTTT 57.097 40.909 0.00 0.00 0.00 3.27
2225 5012 4.575885 TCTCTCCGTAAAATCTGGGTTTG 58.424 43.478 0.00 0.00 0.00 2.93
2226 5013 3.681593 TCTCCGTAAAATCTGGGTTTGG 58.318 45.455 0.00 0.00 0.00 3.28
2227 5014 2.163613 CTCCGTAAAATCTGGGTTTGGC 59.836 50.000 0.00 0.00 0.00 4.52
2228 5015 1.135517 CCGTAAAATCTGGGTTTGGCG 60.136 52.381 0.00 0.00 0.00 5.69
2229 5016 1.538075 CGTAAAATCTGGGTTTGGCGT 59.462 47.619 0.00 0.00 0.00 5.68
2230 5017 2.030628 CGTAAAATCTGGGTTTGGCGTT 60.031 45.455 0.00 0.00 0.00 4.84
2231 5018 3.188873 CGTAAAATCTGGGTTTGGCGTTA 59.811 43.478 0.00 0.00 0.00 3.18
2232 5019 3.934457 AAAATCTGGGTTTGGCGTTAG 57.066 42.857 0.00 0.00 0.00 2.34
2233 5020 1.173913 AATCTGGGTTTGGCGTTAGC 58.826 50.000 0.00 0.00 44.18 3.09
2234 5021 0.328258 ATCTGGGTTTGGCGTTAGCT 59.672 50.000 0.00 0.00 44.37 3.32
2235 5022 0.321298 TCTGGGTTTGGCGTTAGCTC 60.321 55.000 0.00 0.00 44.37 4.09
2236 5023 0.605319 CTGGGTTTGGCGTTAGCTCA 60.605 55.000 0.00 0.00 44.37 4.26
2237 5024 0.037590 TGGGTTTGGCGTTAGCTCAT 59.962 50.000 0.00 0.00 44.37 2.90
2238 5025 0.733150 GGGTTTGGCGTTAGCTCATC 59.267 55.000 0.00 0.00 44.37 2.92
2239 5026 1.679032 GGGTTTGGCGTTAGCTCATCT 60.679 52.381 0.00 0.00 44.37 2.90
2240 5027 2.084546 GGTTTGGCGTTAGCTCATCTT 58.915 47.619 0.00 0.00 44.37 2.40
2241 5028 3.267483 GGTTTGGCGTTAGCTCATCTTA 58.733 45.455 0.00 0.00 44.37 2.10
2242 5029 3.877508 GGTTTGGCGTTAGCTCATCTTAT 59.122 43.478 0.00 0.00 44.37 1.73
2243 5030 5.054477 GGTTTGGCGTTAGCTCATCTTATA 58.946 41.667 0.00 0.00 44.37 0.98
2244 5031 5.701290 GGTTTGGCGTTAGCTCATCTTATAT 59.299 40.000 0.00 0.00 44.37 0.86
2245 5032 6.347725 GGTTTGGCGTTAGCTCATCTTATATG 60.348 42.308 0.00 0.00 44.37 1.78
2246 5033 4.245660 TGGCGTTAGCTCATCTTATATGC 58.754 43.478 0.00 0.00 44.37 3.14
2247 5034 4.245660 GGCGTTAGCTCATCTTATATGCA 58.754 43.478 0.00 0.00 44.37 3.96
2248 5035 4.328440 GGCGTTAGCTCATCTTATATGCAG 59.672 45.833 0.00 0.00 44.37 4.41
2249 5036 4.926238 GCGTTAGCTCATCTTATATGCAGT 59.074 41.667 0.00 0.00 41.01 4.40
2250 5037 5.406780 GCGTTAGCTCATCTTATATGCAGTT 59.593 40.000 0.00 0.00 41.01 3.16
2251 5038 6.073548 GCGTTAGCTCATCTTATATGCAGTTT 60.074 38.462 0.00 0.00 41.01 2.66
2252 5039 7.519008 GCGTTAGCTCATCTTATATGCAGTTTT 60.519 37.037 0.00 0.00 41.01 2.43
2253 5040 8.338259 CGTTAGCTCATCTTATATGCAGTTTTT 58.662 33.333 0.00 0.00 0.00 1.94
2254 5041 9.443283 GTTAGCTCATCTTATATGCAGTTTTTG 57.557 33.333 0.00 0.00 0.00 2.44
2255 5042 7.636150 AGCTCATCTTATATGCAGTTTTTGT 57.364 32.000 0.00 0.00 0.00 2.83
2256 5043 8.059798 AGCTCATCTTATATGCAGTTTTTGTT 57.940 30.769 0.00 0.00 0.00 2.83
2257 5044 9.177608 AGCTCATCTTATATGCAGTTTTTGTTA 57.822 29.630 0.00 0.00 0.00 2.41
2258 5045 9.226345 GCTCATCTTATATGCAGTTTTTGTTAC 57.774 33.333 0.00 0.00 0.00 2.50
2269 5056 9.606631 ATGCAGTTTTTGTTACAATTTTTAGGA 57.393 25.926 0.00 0.00 0.00 2.94
2270 5057 8.874816 TGCAGTTTTTGTTACAATTTTTAGGAC 58.125 29.630 0.00 0.00 0.00 3.85
2271 5058 8.053653 GCAGTTTTTGTTACAATTTTTAGGACG 58.946 33.333 0.00 0.00 0.00 4.79
2272 5059 8.053653 CAGTTTTTGTTACAATTTTTAGGACGC 58.946 33.333 0.00 0.00 0.00 5.19
2273 5060 6.735263 TTTTGTTACAATTTTTAGGACGCG 57.265 33.333 3.53 3.53 0.00 6.01
2274 5061 5.421212 TTGTTACAATTTTTAGGACGCGT 57.579 34.783 13.85 13.85 0.00 6.01
2275 5062 5.021120 TGTTACAATTTTTAGGACGCGTC 57.979 39.130 30.67 30.67 0.00 5.19
2276 5063 4.751098 TGTTACAATTTTTAGGACGCGTCT 59.249 37.500 35.50 23.99 0.00 4.18
2277 5064 5.925397 TGTTACAATTTTTAGGACGCGTCTA 59.075 36.000 35.50 23.01 0.00 2.59
2278 5065 6.089820 TGTTACAATTTTTAGGACGCGTCTAG 59.910 38.462 35.50 17.56 0.00 2.43
2279 5066 4.563061 ACAATTTTTAGGACGCGTCTAGT 58.437 39.130 35.50 23.19 0.00 2.57
2280 5067 4.387862 ACAATTTTTAGGACGCGTCTAGTG 59.612 41.667 35.50 23.18 0.00 2.74
2281 5068 2.642139 TTTTAGGACGCGTCTAGTGG 57.358 50.000 35.50 0.00 33.90 4.00
2282 5069 0.813184 TTTAGGACGCGTCTAGTGGG 59.187 55.000 35.50 0.00 33.90 4.61
2283 5070 1.660560 TTAGGACGCGTCTAGTGGGC 61.661 60.000 35.50 18.86 33.90 5.36
2289 5076 4.514577 CGTCTAGTGGGCGGCTGG 62.515 72.222 9.56 0.00 0.00 4.85
2290 5077 4.840005 GTCTAGTGGGCGGCTGGC 62.840 72.222 11.40 11.40 42.51 4.85
2292 5079 4.845580 CTAGTGGGCGGCTGGCTG 62.846 72.222 19.72 0.00 42.94 4.85
2302 5089 2.437359 GCTGGCTGCCCACTAGTG 60.437 66.667 17.53 16.34 35.79 2.74
2303 5090 2.437359 CTGGCTGCCCACTAGTGC 60.437 66.667 17.86 7.82 35.79 4.40
2304 5091 2.930019 TGGCTGCCCACTAGTGCT 60.930 61.111 17.86 0.00 35.79 4.40
2305 5092 1.612146 TGGCTGCCCACTAGTGCTA 60.612 57.895 17.86 0.36 35.79 3.49
2306 5093 0.982852 TGGCTGCCCACTAGTGCTAT 60.983 55.000 17.86 0.00 35.79 2.97
2307 5094 0.250081 GGCTGCCCACTAGTGCTATC 60.250 60.000 17.86 6.20 0.00 2.08
2308 5095 0.598680 GCTGCCCACTAGTGCTATCG 60.599 60.000 17.86 3.23 0.00 2.92
2309 5096 1.032794 CTGCCCACTAGTGCTATCGA 58.967 55.000 17.86 0.00 0.00 3.59
2310 5097 1.000827 CTGCCCACTAGTGCTATCGAG 60.001 57.143 17.86 1.75 0.00 4.04
2329 5116 2.283316 GGCCGGCCCAAAAAGGTA 60.283 61.111 36.64 0.00 34.66 3.08
2330 5117 1.909287 GGCCGGCCCAAAAAGGTAA 60.909 57.895 36.64 0.00 34.66 2.85
2331 5118 1.589630 GCCGGCCCAAAAAGGTAAG 59.410 57.895 18.11 0.00 34.66 2.34
2332 5119 1.589630 CCGGCCCAAAAAGGTAAGC 59.410 57.895 0.00 0.00 34.66 3.09
2620 5407 2.342179 CGCCTTCTTCTTCTTCTCCAC 58.658 52.381 0.00 0.00 0.00 4.02
2621 5408 2.289072 CGCCTTCTTCTTCTTCTCCACA 60.289 50.000 0.00 0.00 0.00 4.17
2625 5412 4.444876 CCTTCTTCTTCTTCTCCACACCAA 60.445 45.833 0.00 0.00 0.00 3.67
2656 5443 2.379459 GGCCCTTCTTCCTCCTCCC 61.379 68.421 0.00 0.00 0.00 4.30
2662 5449 1.751924 CTTCTTCCTCCTCCCGTACAG 59.248 57.143 0.00 0.00 0.00 2.74
2712 5527 7.690256 AGAAACTACTTCCAAGACATACCAAT 58.310 34.615 0.00 0.00 34.21 3.16
2724 5539 5.789535 AGACATACCAATAGTAGAAGGGGT 58.210 41.667 0.00 0.00 33.42 4.95
2728 5543 5.607171 CATACCAATAGTAGAAGGGGTTCCT 59.393 44.000 0.00 0.00 38.72 3.36
2742 5557 1.512735 GTTCCTAGGCCCTTCTCCAT 58.487 55.000 2.96 0.00 0.00 3.41
2745 5560 1.348008 CCTAGGCCCTTCTCCATGCA 61.348 60.000 0.00 0.00 0.00 3.96
2764 5579 1.584717 AAGAAGGGGATCCAAGGCCC 61.585 60.000 15.23 4.85 43.91 5.80
2784 5599 3.173965 CCTTCTTCCTCCTCCTGTACAA 58.826 50.000 0.00 0.00 0.00 2.41
2793 5608 0.249120 CTCCTGTACAACCGCCATGA 59.751 55.000 0.00 0.00 0.00 3.07
2802 5617 0.887933 AACCGCCATGACAATCCAAC 59.112 50.000 0.00 0.00 0.00 3.77
2814 5629 7.121759 CCATGACAATCCAACAGTAGAAGAAAT 59.878 37.037 0.00 0.00 0.00 2.17
2840 5655 5.278957 GCTTCAAGAAATTGTTCTAAGGGCA 60.279 40.000 0.00 0.00 43.59 5.36
2843 5658 5.473504 TCAAGAAATTGTTCTAAGGGCAGTC 59.526 40.000 0.00 0.00 43.59 3.51
2850 5665 3.196469 TGTTCTAAGGGCAGTCTGATCAG 59.804 47.826 17.07 17.07 0.00 2.90
2854 5669 1.145819 GGGCAGTCTGATCAGAGCC 59.854 63.158 33.11 33.11 43.90 4.70
2871 5686 2.678336 GAGCCATAACAGGTAGCAACAC 59.322 50.000 0.00 0.00 0.00 3.32
2933 5748 5.352569 CCCTTCTTGTACTGCATCTGTAAAG 59.647 44.000 0.00 0.00 0.00 1.85
2979 5794 2.345124 ATCCATGGAGAAGCTGCTTC 57.655 50.000 30.02 30.02 40.45 3.86
3007 5822 4.939399 TGGATCTGCCACATCACG 57.061 55.556 0.00 0.00 43.33 4.35
3017 5832 0.168788 CCACATCACGCCATTGTCAC 59.831 55.000 0.00 0.00 0.00 3.67
3018 5833 0.873721 CACATCACGCCATTGTCACA 59.126 50.000 0.00 0.00 0.00 3.58
3019 5834 1.469703 CACATCACGCCATTGTCACAT 59.530 47.619 0.00 0.00 0.00 3.21
3020 5835 1.739466 ACATCACGCCATTGTCACATC 59.261 47.619 0.00 0.00 0.00 3.06
3021 5836 1.738908 CATCACGCCATTGTCACATCA 59.261 47.619 0.00 0.00 0.00 3.07
3022 5837 1.155889 TCACGCCATTGTCACATCAC 58.844 50.000 0.00 0.00 0.00 3.06
3023 5838 0.873721 CACGCCATTGTCACATCACA 59.126 50.000 0.00 0.00 0.00 3.58
3024 5839 0.874390 ACGCCATTGTCACATCACAC 59.126 50.000 0.00 0.00 0.00 3.82
3085 5900 9.349713 ACTAAACATGGTTTGAGATCAAGTTTA 57.650 29.630 12.01 12.59 37.15 2.01
3095 5910 8.534778 GTTTGAGATCAAGTTTAGCAAAAACTG 58.465 33.333 15.45 10.82 40.10 3.16
3100 5915 8.416329 AGATCAAGTTTAGCAAAAACTGAACAT 58.584 29.630 15.45 7.43 40.10 2.71
3113 5928 9.956797 CAAAAACTGAACATGTTTTCTAAACTG 57.043 29.630 13.36 4.72 43.94 3.16
3139 5954 3.024547 TGTTCAGCTAGCCGACTAAGAT 58.975 45.455 12.13 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.345741 TCGTATAAACTTAACTGAACGGTGC 59.654 40.000 0.00 0.00 0.00 5.01
25 26 3.255888 TCTCAGTGTGTCAAGCTTCGTAT 59.744 43.478 0.00 0.00 0.00 3.06
26 27 2.621526 TCTCAGTGTGTCAAGCTTCGTA 59.378 45.455 0.00 0.00 0.00 3.43
32 33 2.231215 ACTGTCTCAGTGTGTCAAGC 57.769 50.000 1.44 0.00 43.63 4.01
43 44 0.380378 GGCACGCAAAAACTGTCTCA 59.620 50.000 0.00 0.00 0.00 3.27
102 103 1.522806 GTGTTGTGAGGCGTGTGGA 60.523 57.895 0.00 0.00 0.00 4.02
165 167 0.175989 GTGGACTAGGTGGTAGCTGC 59.824 60.000 0.00 0.00 30.92 5.25
170 172 2.703798 GCGCGTGGACTAGGTGGTA 61.704 63.158 8.43 0.00 0.00 3.25
197 199 1.134175 CGTGTGGGTGAAAAGCAGTTT 59.866 47.619 0.00 0.00 0.00 2.66
318 322 1.431488 CTGATTGCCACGTATGCGCT 61.431 55.000 9.73 0.00 42.83 5.92
351 355 4.693566 CCACGTGTGGTTAATCATAGTTGT 59.306 41.667 15.65 0.00 45.53 3.32
416 422 3.374058 GTGTGCGATTAACTACTTGCCAT 59.626 43.478 0.00 0.00 0.00 4.40
433 439 2.546368 TCAAACCATAGTTGTCGTGTGC 59.454 45.455 0.00 0.00 35.97 4.57
501 507 3.558931 TGGCAACTCTCTCTGTTTTGA 57.441 42.857 0.00 0.00 37.61 2.69
531 537 4.860802 ATCCGGGATGGCAAATATGATA 57.139 40.909 9.17 0.00 37.80 2.15
533 539 4.042809 AGTTATCCGGGATGGCAAATATGA 59.957 41.667 19.82 0.00 37.80 2.15
572 578 5.070685 GGGGAAGACAGTTTAGTTGTCATT 58.929 41.667 7.96 0.48 45.72 2.57
586 592 0.104356 TTGGTACCAGGGGGAAGACA 60.104 55.000 15.65 0.00 38.05 3.41
590 596 1.462426 ACAATTGGTACCAGGGGGAA 58.538 50.000 15.65 0.00 38.05 3.97
595 601 2.418628 CGCAACTACAATTGGTACCAGG 59.581 50.000 15.65 11.36 0.00 4.45
597 603 1.807742 GCGCAACTACAATTGGTACCA 59.192 47.619 11.60 11.60 0.00 3.25
604 610 1.812571 CTTCCTGGCGCAACTACAATT 59.187 47.619 10.83 0.00 0.00 2.32
605 612 1.271379 ACTTCCTGGCGCAACTACAAT 60.271 47.619 10.83 0.00 0.00 2.71
663 670 4.081087 ACGCCCAACAAATACTACTCATCT 60.081 41.667 0.00 0.00 0.00 2.90
733 740 3.807839 ACAGGCTGTGTGTGGGCA 61.808 61.111 21.37 0.00 38.28 5.36
794 801 3.066621 CGTGTGGCATAATAGGCATTTGT 59.933 43.478 0.00 0.00 46.23 2.83
839 846 6.223852 ACTACATGCCAAGGAACGATATAAG 58.776 40.000 0.00 0.00 0.00 1.73
840 847 6.169557 ACTACATGCCAAGGAACGATATAA 57.830 37.500 0.00 0.00 0.00 0.98
841 848 5.279306 GGACTACATGCCAAGGAACGATATA 60.279 44.000 0.00 0.00 0.00 0.86
842 849 4.503296 GGACTACATGCCAAGGAACGATAT 60.503 45.833 0.00 0.00 0.00 1.63
843 850 3.181469 GGACTACATGCCAAGGAACGATA 60.181 47.826 0.00 0.00 0.00 2.92
844 851 2.420129 GGACTACATGCCAAGGAACGAT 60.420 50.000 0.00 0.00 0.00 3.73
845 852 1.066430 GGACTACATGCCAAGGAACGA 60.066 52.381 0.00 0.00 0.00 3.85
846 853 1.066143 AGGACTACATGCCAAGGAACG 60.066 52.381 0.00 0.00 0.00 3.95
847 854 2.789409 AGGACTACATGCCAAGGAAC 57.211 50.000 0.00 0.00 0.00 3.62
848 855 6.014242 CAGATATAGGACTACATGCCAAGGAA 60.014 42.308 0.00 0.00 0.00 3.36
849 856 5.481824 CAGATATAGGACTACATGCCAAGGA 59.518 44.000 0.00 0.00 0.00 3.36
850 857 5.728471 CAGATATAGGACTACATGCCAAGG 58.272 45.833 0.00 0.00 0.00 3.61
851 858 5.046735 AGCAGATATAGGACTACATGCCAAG 60.047 44.000 0.00 0.00 32.95 3.61
861 868 6.043012 AGCAAATCAAGAGCAGATATAGGACT 59.957 38.462 0.00 0.00 0.00 3.85
862 869 6.229733 AGCAAATCAAGAGCAGATATAGGAC 58.770 40.000 0.00 0.00 0.00 3.85
863 870 6.430962 AGCAAATCAAGAGCAGATATAGGA 57.569 37.500 0.00 0.00 0.00 2.94
864 871 6.128607 CGAAGCAAATCAAGAGCAGATATAGG 60.129 42.308 0.00 0.00 0.00 2.57
865 872 6.644181 TCGAAGCAAATCAAGAGCAGATATAG 59.356 38.462 0.00 0.00 0.00 1.31
875 882 2.079158 CTGCCTCGAAGCAAATCAAGA 58.921 47.619 10.42 0.00 43.52 3.02
876 883 2.079158 TCTGCCTCGAAGCAAATCAAG 58.921 47.619 10.42 0.00 43.52 3.02
879 886 1.260033 CGATCTGCCTCGAAGCAAATC 59.740 52.381 11.56 11.56 43.52 2.17
892 899 2.352960 GTGGGAAGTTTGATCGATCTGC 59.647 50.000 25.02 14.79 0.00 4.26
897 904 2.355716 GGGATGTGGGAAGTTTGATCGA 60.356 50.000 0.00 0.00 0.00 3.59
903 910 1.499007 ACTGTGGGATGTGGGAAGTTT 59.501 47.619 0.00 0.00 0.00 2.66
905 912 2.038863 TACTGTGGGATGTGGGAAGT 57.961 50.000 0.00 0.00 0.00 3.01
906 913 3.652057 ATTACTGTGGGATGTGGGAAG 57.348 47.619 0.00 0.00 0.00 3.46
907 914 8.513139 TTATATATTACTGTGGGATGTGGGAA 57.487 34.615 0.00 0.00 0.00 3.97
908 915 8.380099 GTTTATATATTACTGTGGGATGTGGGA 58.620 37.037 0.00 0.00 0.00 4.37
909 916 7.333423 CGTTTATATATTACTGTGGGATGTGGG 59.667 40.741 0.00 0.00 0.00 4.61
910 917 7.876068 ACGTTTATATATTACTGTGGGATGTGG 59.124 37.037 0.00 0.00 0.00 4.17
911 918 8.827177 ACGTTTATATATTACTGTGGGATGTG 57.173 34.615 0.00 0.00 0.00 3.21
914 921 8.755977 CCCTACGTTTATATATTACTGTGGGAT 58.244 37.037 0.00 0.00 0.00 3.85
925 932 7.092716 ACGCGAAATTCCCTACGTTTATATAT 58.907 34.615 15.93 0.00 0.00 0.86
932 939 1.461897 CAACGCGAAATTCCCTACGTT 59.538 47.619 15.93 0.00 43.73 3.99
936 943 1.198178 GCAACAACGCGAAATTCCCTA 59.802 47.619 15.93 0.00 0.00 3.53
954 961 2.449464 CACTCCAATGGAAGATTGGCA 58.551 47.619 2.61 0.00 46.11 4.92
958 965 3.686691 GCTAGGCACTCCAATGGAAGATT 60.687 47.826 2.61 0.00 41.75 2.40
959 966 2.158696 GCTAGGCACTCCAATGGAAGAT 60.159 50.000 2.61 0.00 41.75 2.40
968 975 3.009115 GGTGGGCTAGGCACTCCA 61.009 66.667 19.14 3.63 44.06 3.86
976 983 3.190535 GTGTAATTGTGTTGGTGGGCTAG 59.809 47.826 0.00 0.00 0.00 3.42
977 984 3.150767 GTGTAATTGTGTTGGTGGGCTA 58.849 45.455 0.00 0.00 0.00 3.93
978 985 1.960689 GTGTAATTGTGTTGGTGGGCT 59.039 47.619 0.00 0.00 0.00 5.19
979 986 1.683917 TGTGTAATTGTGTTGGTGGGC 59.316 47.619 0.00 0.00 0.00 5.36
981 988 4.305769 CCATTGTGTAATTGTGTTGGTGG 58.694 43.478 0.00 0.00 0.00 4.61
982 989 3.740321 GCCATTGTGTAATTGTGTTGGTG 59.260 43.478 0.00 0.00 0.00 4.17
983 990 3.386078 TGCCATTGTGTAATTGTGTTGGT 59.614 39.130 0.00 0.00 0.00 3.67
984 991 3.987547 TGCCATTGTGTAATTGTGTTGG 58.012 40.909 0.00 0.00 0.00 3.77
985 992 4.869215 TCTGCCATTGTGTAATTGTGTTG 58.131 39.130 0.00 0.00 0.00 3.33
987 994 4.397420 TCTCTGCCATTGTGTAATTGTGT 58.603 39.130 0.00 0.00 0.00 3.72
988 995 5.571784 ATCTCTGCCATTGTGTAATTGTG 57.428 39.130 0.00 0.00 0.00 3.33
992 999 4.463539 TGCAAATCTCTGCCATTGTGTAAT 59.536 37.500 0.00 0.00 41.90 1.89
993 1000 3.825585 TGCAAATCTCTGCCATTGTGTAA 59.174 39.130 0.00 0.00 41.90 2.41
994 1001 3.419943 TGCAAATCTCTGCCATTGTGTA 58.580 40.909 0.00 0.00 41.90 2.90
995 1002 2.241160 TGCAAATCTCTGCCATTGTGT 58.759 42.857 0.00 0.00 41.90 3.72
998 1005 4.386867 AGATTGCAAATCTCTGCCATTG 57.613 40.909 1.71 0.00 41.90 2.82
1015 1022 2.226962 ACATTGGCAGCAGGAAGATT 57.773 45.000 0.00 0.00 0.00 2.40
1037 1044 5.426509 ACATATGAACTTCCCTGAGATGACA 59.573 40.000 10.38 0.00 0.00 3.58
1045 1052 6.351711 TCTTGATCACATATGAACTTCCCTG 58.648 40.000 10.38 0.00 38.69 4.45
1100 1107 1.663643 TCACATATTTTCCACGCTCGC 59.336 47.619 0.00 0.00 0.00 5.03
1116 1123 2.105821 ACTGAAAGGGGTCGATTTCACA 59.894 45.455 7.63 0.00 39.76 3.58
1214 1227 6.658391 AGCAGAATCAAGAGCTAGAAAAACAT 59.342 34.615 0.00 0.00 35.19 2.71
1282 1301 4.137543 GGTTCTACCTCATTGCCAATAGG 58.862 47.826 9.86 9.86 34.73 2.57
1283 1302 4.780815 TGGTTCTACCTCATTGCCAATAG 58.219 43.478 0.00 0.00 39.58 1.73
1284 1303 4.227300 ACTGGTTCTACCTCATTGCCAATA 59.773 41.667 0.00 0.00 39.58 1.90
1285 1304 3.010584 ACTGGTTCTACCTCATTGCCAAT 59.989 43.478 0.00 0.00 39.58 3.16
1286 1305 2.375174 ACTGGTTCTACCTCATTGCCAA 59.625 45.455 0.00 0.00 39.58 4.52
1287 1306 1.985159 ACTGGTTCTACCTCATTGCCA 59.015 47.619 0.00 0.00 39.58 4.92
1293 1312 3.884467 ACCCACTGGTTCTACCTCA 57.116 52.632 0.00 0.00 44.75 3.86
1327 1346 2.037251 TGCTAGGGAAGATATGTTCGGC 59.963 50.000 6.52 8.42 0.00 5.54
1390 1412 7.736691 TCCTTAGATACATTGATCCCTCAGATT 59.263 37.037 0.00 0.00 34.42 2.40
1537 1563 1.227674 GTCACATCCGCTCCATCCC 60.228 63.158 0.00 0.00 0.00 3.85
1610 1640 3.529533 CTCCGCTTTGAAGACAGATGAT 58.470 45.455 0.00 0.00 0.00 2.45
1669 1699 6.996879 ATCAGGTTCCATATCACTGATTTCAG 59.003 38.462 6.03 6.03 44.08 3.02
1760 1805 2.346803 GCATCTCTTCGTGCTTTACCA 58.653 47.619 0.00 0.00 38.30 3.25
1764 1809 0.320771 ACCGCATCTCTTCGTGCTTT 60.321 50.000 0.00 0.00 39.16 3.51
1807 1852 6.040955 CCTCTCAATGTAATACCTGTCAGCTA 59.959 42.308 0.00 0.00 0.00 3.32
1821 1866 2.906389 ACACCTTCAGCCTCTCAATGTA 59.094 45.455 0.00 0.00 0.00 2.29
1842 1887 6.039717 AGCTTGCATAACTTCTCTTCACAAAA 59.960 34.615 0.00 0.00 0.00 2.44
1869 1914 1.337167 TGCCACAATGTCAGAGTCGAG 60.337 52.381 0.00 0.00 0.00 4.04
1919 1964 0.390472 CTTCCTTGAGTCTGCGGGAC 60.390 60.000 0.00 0.00 44.80 4.46
1974 2019 0.035152 TCACTTGCCATCATCGCCTT 60.035 50.000 0.00 0.00 0.00 4.35
2047 4834 1.482593 GCTCAGCAGGTAGGAAGCTAA 59.517 52.381 0.00 0.00 36.73 3.09
2057 4844 1.453235 TGCTTTCAGCTCAGCAGGT 59.547 52.632 0.00 0.00 41.20 4.00
2103 4890 9.990868 TGCTATGGTAGAAGATATGGATACTAA 57.009 33.333 0.00 0.00 37.61 2.24
2104 4891 9.990868 TTGCTATGGTAGAAGATATGGATACTA 57.009 33.333 0.00 0.00 37.61 1.82
2105 4892 8.754080 GTTGCTATGGTAGAAGATATGGATACT 58.246 37.037 0.00 0.00 37.61 2.12
2106 4893 8.754080 AGTTGCTATGGTAGAAGATATGGATAC 58.246 37.037 0.00 0.00 0.00 2.24
2107 4894 8.753133 CAGTTGCTATGGTAGAAGATATGGATA 58.247 37.037 0.00 0.00 0.00 2.59
2108 4895 7.619050 CAGTTGCTATGGTAGAAGATATGGAT 58.381 38.462 0.00 0.00 0.00 3.41
2109 4896 6.519043 GCAGTTGCTATGGTAGAAGATATGGA 60.519 42.308 0.00 0.00 38.21 3.41
2110 4897 5.641209 GCAGTTGCTATGGTAGAAGATATGG 59.359 44.000 0.00 0.00 38.21 2.74
2111 4898 6.226052 TGCAGTTGCTATGGTAGAAGATATG 58.774 40.000 5.62 0.00 42.66 1.78
2112 4899 6.425210 TGCAGTTGCTATGGTAGAAGATAT 57.575 37.500 5.62 0.00 42.66 1.63
2113 4900 5.869649 TGCAGTTGCTATGGTAGAAGATA 57.130 39.130 5.62 0.00 42.66 1.98
2114 4901 4.760530 TGCAGTTGCTATGGTAGAAGAT 57.239 40.909 5.62 0.00 42.66 2.40
2115 4902 4.551702 TTGCAGTTGCTATGGTAGAAGA 57.448 40.909 5.62 0.00 42.66 2.87
2116 4903 5.182001 ACTTTTGCAGTTGCTATGGTAGAAG 59.818 40.000 5.62 0.73 42.66 2.85
2117 4904 5.048782 CACTTTTGCAGTTGCTATGGTAGAA 60.049 40.000 5.62 0.00 42.66 2.10
2118 4905 4.455533 CACTTTTGCAGTTGCTATGGTAGA 59.544 41.667 5.62 0.00 42.66 2.59
2119 4906 4.726416 CACTTTTGCAGTTGCTATGGTAG 58.274 43.478 5.62 0.00 42.66 3.18
2120 4907 4.764679 CACTTTTGCAGTTGCTATGGTA 57.235 40.909 5.62 0.00 42.66 3.25
2121 4908 3.648339 CACTTTTGCAGTTGCTATGGT 57.352 42.857 5.62 0.00 42.66 3.55
2192 4979 9.992442 AGATTTTACGGAGAGATCCCTTATATA 57.008 33.333 0.00 0.00 0.00 0.86
2193 4980 8.754080 CAGATTTTACGGAGAGATCCCTTATAT 58.246 37.037 0.00 0.00 0.00 0.86
2194 4981 7.178628 CCAGATTTTACGGAGAGATCCCTTATA 59.821 40.741 0.00 0.00 0.00 0.98
2195 4982 6.014156 CCAGATTTTACGGAGAGATCCCTTAT 60.014 42.308 0.00 0.00 0.00 1.73
2196 4983 5.304614 CCAGATTTTACGGAGAGATCCCTTA 59.695 44.000 0.00 0.00 0.00 2.69
2197 4984 4.101741 CCAGATTTTACGGAGAGATCCCTT 59.898 45.833 0.00 0.00 0.00 3.95
2198 4985 3.643792 CCAGATTTTACGGAGAGATCCCT 59.356 47.826 0.00 0.00 0.00 4.20
2199 4986 3.244249 CCCAGATTTTACGGAGAGATCCC 60.244 52.174 0.00 0.00 0.00 3.85
2200 4987 3.388350 ACCCAGATTTTACGGAGAGATCC 59.612 47.826 0.00 0.00 0.00 3.36
2201 4988 4.674281 ACCCAGATTTTACGGAGAGATC 57.326 45.455 0.00 0.00 0.00 2.75
2202 4989 5.186198 CAAACCCAGATTTTACGGAGAGAT 58.814 41.667 0.00 0.00 0.00 2.75
2203 4990 4.564821 CCAAACCCAGATTTTACGGAGAGA 60.565 45.833 0.00 0.00 0.00 3.10
2204 4991 3.689649 CCAAACCCAGATTTTACGGAGAG 59.310 47.826 0.00 0.00 0.00 3.20
2205 4992 3.681593 CCAAACCCAGATTTTACGGAGA 58.318 45.455 0.00 0.00 0.00 3.71
2206 4993 2.163613 GCCAAACCCAGATTTTACGGAG 59.836 50.000 0.00 0.00 0.00 4.63
2207 4994 2.164338 GCCAAACCCAGATTTTACGGA 58.836 47.619 0.00 0.00 0.00 4.69
2208 4995 1.135517 CGCCAAACCCAGATTTTACGG 60.136 52.381 0.00 0.00 0.00 4.02
2209 4996 1.538075 ACGCCAAACCCAGATTTTACG 59.462 47.619 0.00 0.00 0.00 3.18
2210 4997 3.653539 AACGCCAAACCCAGATTTTAC 57.346 42.857 0.00 0.00 0.00 2.01
2211 4998 3.191791 GCTAACGCCAAACCCAGATTTTA 59.808 43.478 0.00 0.00 0.00 1.52
2212 4999 2.029380 GCTAACGCCAAACCCAGATTTT 60.029 45.455 0.00 0.00 0.00 1.82
2213 5000 1.544246 GCTAACGCCAAACCCAGATTT 59.456 47.619 0.00 0.00 0.00 2.17
2214 5001 1.173913 GCTAACGCCAAACCCAGATT 58.826 50.000 0.00 0.00 0.00 2.40
2215 5002 0.328258 AGCTAACGCCAAACCCAGAT 59.672 50.000 0.00 0.00 36.60 2.90
2216 5003 0.321298 GAGCTAACGCCAAACCCAGA 60.321 55.000 0.00 0.00 36.60 3.86
2217 5004 0.605319 TGAGCTAACGCCAAACCCAG 60.605 55.000 0.00 0.00 36.60 4.45
2218 5005 0.037590 ATGAGCTAACGCCAAACCCA 59.962 50.000 0.00 0.00 36.60 4.51
2219 5006 0.733150 GATGAGCTAACGCCAAACCC 59.267 55.000 0.00 0.00 36.60 4.11
2220 5007 1.739067 AGATGAGCTAACGCCAAACC 58.261 50.000 0.00 0.00 36.60 3.27
2221 5008 6.593978 CATATAAGATGAGCTAACGCCAAAC 58.406 40.000 0.00 0.00 36.60 2.93
2222 5009 5.179368 GCATATAAGATGAGCTAACGCCAAA 59.821 40.000 0.00 0.00 36.60 3.28
2223 5010 4.690748 GCATATAAGATGAGCTAACGCCAA 59.309 41.667 0.00 0.00 36.60 4.52
2224 5011 4.245660 GCATATAAGATGAGCTAACGCCA 58.754 43.478 0.00 0.00 36.60 5.69
2225 5012 4.245660 TGCATATAAGATGAGCTAACGCC 58.754 43.478 0.00 0.00 36.60 5.68
2226 5013 4.926238 ACTGCATATAAGATGAGCTAACGC 59.074 41.667 0.00 0.00 0.00 4.84
2227 5014 7.413475 AAACTGCATATAAGATGAGCTAACG 57.587 36.000 0.00 0.00 0.00 3.18
2228 5015 9.443283 CAAAAACTGCATATAAGATGAGCTAAC 57.557 33.333 0.00 0.00 0.00 2.34
2229 5016 9.177608 ACAAAAACTGCATATAAGATGAGCTAA 57.822 29.630 0.00 0.00 0.00 3.09
2230 5017 8.737168 ACAAAAACTGCATATAAGATGAGCTA 57.263 30.769 0.00 0.00 0.00 3.32
2231 5018 7.636150 ACAAAAACTGCATATAAGATGAGCT 57.364 32.000 0.00 0.00 0.00 4.09
2232 5019 9.226345 GTAACAAAAACTGCATATAAGATGAGC 57.774 33.333 0.00 0.00 0.00 4.26
2243 5030 9.606631 TCCTAAAAATTGTAACAAAAACTGCAT 57.393 25.926 0.00 0.00 0.00 3.96
2244 5031 8.874816 GTCCTAAAAATTGTAACAAAAACTGCA 58.125 29.630 0.00 0.00 0.00 4.41
2245 5032 8.053653 CGTCCTAAAAATTGTAACAAAAACTGC 58.946 33.333 0.00 0.00 0.00 4.40
2246 5033 8.053653 GCGTCCTAAAAATTGTAACAAAAACTG 58.946 33.333 0.00 0.00 0.00 3.16
2247 5034 7.043920 CGCGTCCTAAAAATTGTAACAAAAACT 60.044 33.333 0.00 0.00 0.00 2.66
2248 5035 7.052602 CGCGTCCTAAAAATTGTAACAAAAAC 58.947 34.615 0.00 0.00 0.00 2.43
2249 5036 6.750963 ACGCGTCCTAAAAATTGTAACAAAAA 59.249 30.769 5.58 0.00 0.00 1.94
2250 5037 6.264088 ACGCGTCCTAAAAATTGTAACAAAA 58.736 32.000 5.58 0.00 0.00 2.44
2251 5038 5.819059 ACGCGTCCTAAAAATTGTAACAAA 58.181 33.333 5.58 0.00 0.00 2.83
2252 5039 5.236911 AGACGCGTCCTAAAAATTGTAACAA 59.763 36.000 34.08 0.00 0.00 2.83
2253 5040 4.751098 AGACGCGTCCTAAAAATTGTAACA 59.249 37.500 34.08 0.00 0.00 2.41
2254 5041 5.273523 AGACGCGTCCTAAAAATTGTAAC 57.726 39.130 34.08 5.44 0.00 2.50
2255 5042 6.089820 CACTAGACGCGTCCTAAAAATTGTAA 59.910 38.462 34.08 0.00 0.00 2.41
2256 5043 5.574055 CACTAGACGCGTCCTAAAAATTGTA 59.426 40.000 34.08 15.33 0.00 2.41
2257 5044 4.387862 CACTAGACGCGTCCTAAAAATTGT 59.612 41.667 34.08 17.94 0.00 2.71
2258 5045 4.201685 CCACTAGACGCGTCCTAAAAATTG 60.202 45.833 34.08 17.31 0.00 2.32
2259 5046 3.930848 CCACTAGACGCGTCCTAAAAATT 59.069 43.478 34.08 16.48 0.00 1.82
2260 5047 3.518590 CCACTAGACGCGTCCTAAAAAT 58.481 45.455 34.08 17.23 0.00 1.82
2261 5048 2.353011 CCCACTAGACGCGTCCTAAAAA 60.353 50.000 34.08 12.82 0.00 1.94
2262 5049 1.203052 CCCACTAGACGCGTCCTAAAA 59.797 52.381 34.08 14.54 0.00 1.52
2263 5050 0.813184 CCCACTAGACGCGTCCTAAA 59.187 55.000 34.08 16.98 0.00 1.85
2264 5051 1.660560 GCCCACTAGACGCGTCCTAA 61.661 60.000 34.08 19.45 0.00 2.69
2265 5052 2.117156 GCCCACTAGACGCGTCCTA 61.117 63.158 34.08 22.90 0.00 2.94
2266 5053 3.450115 GCCCACTAGACGCGTCCT 61.450 66.667 34.08 23.01 0.00 3.85
2267 5054 4.849329 CGCCCACTAGACGCGTCC 62.849 72.222 34.08 16.62 40.99 4.79
2268 5055 4.849329 CCGCCCACTAGACGCGTC 62.849 72.222 31.30 31.30 44.29 5.19
2272 5059 4.514577 CCAGCCGCCCACTAGACG 62.515 72.222 0.00 0.00 0.00 4.18
2273 5060 4.840005 GCCAGCCGCCCACTAGAC 62.840 72.222 0.00 0.00 0.00 2.59
2275 5062 4.845580 CAGCCAGCCGCCCACTAG 62.846 72.222 0.00 0.00 38.78 2.57
2285 5072 2.437359 CACTAGTGGGCAGCCAGC 60.437 66.667 15.19 4.94 44.65 4.85
2286 5073 1.617018 TAGCACTAGTGGGCAGCCAG 61.617 60.000 23.95 4.12 0.00 4.85
2287 5074 0.982852 ATAGCACTAGTGGGCAGCCA 60.983 55.000 23.95 0.00 0.00 4.75
2288 5075 0.250081 GATAGCACTAGTGGGCAGCC 60.250 60.000 23.95 1.26 0.00 4.85
2289 5076 0.598680 CGATAGCACTAGTGGGCAGC 60.599 60.000 23.95 9.45 0.00 5.25
2290 5077 1.000827 CTCGATAGCACTAGTGGGCAG 60.001 57.143 23.95 0.00 0.00 4.85
2291 5078 1.032794 CTCGATAGCACTAGTGGGCA 58.967 55.000 23.95 2.89 0.00 5.36
2292 5079 3.875838 CTCGATAGCACTAGTGGGC 57.124 57.895 23.95 10.97 0.00 5.36
2312 5099 1.884075 CTTACCTTTTTGGGCCGGCC 61.884 60.000 38.57 38.57 41.11 6.13
2313 5100 1.589630 CTTACCTTTTTGGGCCGGC 59.410 57.895 21.18 21.18 41.11 6.13
2314 5101 1.589630 GCTTACCTTTTTGGGCCGG 59.410 57.895 0.00 0.00 41.11 6.13
2600 5387 2.289072 TGTGGAGAAGAAGAAGAAGGCG 60.289 50.000 0.00 0.00 0.00 5.52
2601 5388 3.070748 GTGTGGAGAAGAAGAAGAAGGC 58.929 50.000 0.00 0.00 0.00 4.35
2602 5389 3.071602 TGGTGTGGAGAAGAAGAAGAAGG 59.928 47.826 0.00 0.00 0.00 3.46
2603 5390 4.342862 TGGTGTGGAGAAGAAGAAGAAG 57.657 45.455 0.00 0.00 0.00 2.85
2604 5391 4.771114 TTGGTGTGGAGAAGAAGAAGAA 57.229 40.909 0.00 0.00 0.00 2.52
2605 5392 4.771114 TTTGGTGTGGAGAAGAAGAAGA 57.229 40.909 0.00 0.00 0.00 2.87
2620 5407 1.560505 CCTTGGATCCCCTTTTGGTG 58.439 55.000 9.90 0.00 38.10 4.17
2621 5408 0.252239 GCCTTGGATCCCCTTTTGGT 60.252 55.000 9.90 0.00 38.10 3.67
2625 5412 1.547495 AGGGCCTTGGATCCCCTTT 60.547 57.895 9.90 0.00 46.98 3.11
2680 5467 8.701908 TGTCTTGGAAGTAGTTTCTTCTACTA 57.298 34.615 6.78 0.00 46.49 1.82
2699 5486 6.099845 ACCCCTTCTACTATTGGTATGTCTTG 59.900 42.308 0.00 0.00 0.00 3.02
2701 5488 5.789535 ACCCCTTCTACTATTGGTATGTCT 58.210 41.667 0.00 0.00 0.00 3.41
2702 5489 6.464039 GGAACCCCTTCTACTATTGGTATGTC 60.464 46.154 0.00 0.00 0.00 3.06
2712 5527 2.090887 GGCCTAGGAACCCCTTCTACTA 60.091 54.545 14.75 0.00 40.78 1.82
2724 5539 1.511613 CATGGAGAAGGGCCTAGGAA 58.488 55.000 14.75 0.00 0.00 3.36
2728 5543 0.548031 CTTGCATGGAGAAGGGCCTA 59.452 55.000 6.41 0.00 0.00 3.93
2742 5557 0.332632 CCTTGGATCCCCTTCTTGCA 59.667 55.000 9.90 0.00 0.00 4.08
2745 5560 1.584717 GGGCCTTGGATCCCCTTCTT 61.585 60.000 9.90 0.00 36.50 2.52
2764 5579 3.055747 GGTTGTACAGGAGGAGGAAGAAG 60.056 52.174 0.00 0.00 0.00 2.85
2784 5599 0.251121 TGTTGGATTGTCATGGCGGT 60.251 50.000 0.00 0.00 0.00 5.68
2793 5608 6.491403 AGCAATTTCTTCTACTGTTGGATTGT 59.509 34.615 0.00 0.00 0.00 2.71
2802 5617 9.688592 AATTTCTTGAAGCAATTTCTTCTACTG 57.311 29.630 17.01 6.53 42.15 2.74
2814 5629 6.738453 GCCCTTAGAACAATTTCTTGAAGCAA 60.738 38.462 0.00 0.00 39.17 3.91
2840 5655 3.387374 CCTGTTATGGCTCTGATCAGACT 59.613 47.826 21.67 9.06 33.22 3.24
2843 5658 3.834489 ACCTGTTATGGCTCTGATCAG 57.166 47.619 17.07 17.07 0.00 2.90
2850 5665 2.678336 GTGTTGCTACCTGTTATGGCTC 59.322 50.000 0.00 0.00 0.00 4.70
2854 5669 3.009723 CCTGGTGTTGCTACCTGTTATG 58.990 50.000 0.00 0.00 41.43 1.90
2871 5686 0.253327 GAGGGGAGTTACTTGCCTGG 59.747 60.000 0.00 0.00 0.00 4.45
2933 5748 1.734655 TAGATCCATGGAGAAGGGGC 58.265 55.000 21.33 3.41 0.00 5.80
3007 5822 1.068333 GTGGTGTGATGTGACAATGGC 60.068 52.381 0.00 0.00 0.00 4.40
3017 5832 2.035626 GGGGGTGGTGGTGTGATG 59.964 66.667 0.00 0.00 0.00 3.07
3018 5833 2.451493 TGGGGGTGGTGGTGTGAT 60.451 61.111 0.00 0.00 0.00 3.06
3019 5834 3.494254 GTGGGGGTGGTGGTGTGA 61.494 66.667 0.00 0.00 0.00 3.58
3020 5835 4.596585 GGTGGGGGTGGTGGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
3039 5854 4.970621 GCAGATGCACTCATGGGA 57.029 55.556 0.00 0.00 41.59 4.37
3085 5900 8.655970 GTTTAGAAAACATGTTCAGTTTTTGCT 58.344 29.630 12.39 0.56 46.01 3.91
3095 5910 6.039382 ACACCTCCAGTTTAGAAAACATGTTC 59.961 38.462 12.39 0.00 0.00 3.18
3100 5915 5.502079 TGAACACCTCCAGTTTAGAAAACA 58.498 37.500 5.42 0.00 0.00 2.83
3113 5928 1.153549 CGGCTAGCTGAACACCTCC 60.154 63.158 19.34 0.00 0.00 4.30
3139 5954 9.249053 TCATGTTTTAGTTGGCCAGAAAATATA 57.751 29.630 20.99 13.73 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.