Multiple sequence alignment - TraesCS1B01G088500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G088500 chr1B 100.000 2969 0 0 1 2969 84981951 84978983 0.000000e+00 5483.0
1 TraesCS1B01G088500 chr1D 92.568 2543 80 42 474 2966 52978127 52975644 0.000000e+00 3548.0
2 TraesCS1B01G088500 chr1A 91.938 1873 57 40 1148 2965 52574523 52572690 0.000000e+00 2536.0
3 TraesCS1B01G088500 chr1A 92.000 650 27 12 441 1075 52575610 52574971 0.000000e+00 889.0
4 TraesCS1B01G088500 chr4A 97.872 47 1 0 1238 1284 695467810 695467764 6.820000e-12 82.4
5 TraesCS1B01G088500 chr5B 96.970 33 0 1 962 994 713014054 713014085 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G088500 chr1B 84978983 84981951 2968 True 5483.0 5483 100.000 1 2969 1 chr1B.!!$R1 2968
1 TraesCS1B01G088500 chr1D 52975644 52978127 2483 True 3548.0 3548 92.568 474 2966 1 chr1D.!!$R1 2492
2 TraesCS1B01G088500 chr1A 52572690 52575610 2920 True 1712.5 2536 91.969 441 2965 2 chr1A.!!$R1 2524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 399 0.041238 AGCTGGCAGTAGTACCCTCA 59.959 55.0 17.16 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2399 0.028505 GTGCGTGCATAGCATGGAAG 59.971 55.0 20.06 0.0 46.44 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.012319 CAGAGTTGCGGAGATTCAAATG 57.988 45.455 0.00 0.00 0.00 2.32
22 23 3.438087 CAGAGTTGCGGAGATTCAAATGT 59.562 43.478 0.00 0.00 0.00 2.71
23 24 4.631377 CAGAGTTGCGGAGATTCAAATGTA 59.369 41.667 0.00 0.00 0.00 2.29
24 25 4.631813 AGAGTTGCGGAGATTCAAATGTAC 59.368 41.667 0.00 0.00 0.00 2.90
25 26 4.323417 AGTTGCGGAGATTCAAATGTACA 58.677 39.130 0.00 0.00 0.00 2.90
26 27 4.943705 AGTTGCGGAGATTCAAATGTACAT 59.056 37.500 1.41 1.41 0.00 2.29
27 28 6.112734 AGTTGCGGAGATTCAAATGTACATA 58.887 36.000 9.21 0.00 0.00 2.29
28 29 6.767902 AGTTGCGGAGATTCAAATGTACATAT 59.232 34.615 9.21 0.00 0.00 1.78
29 30 7.283127 AGTTGCGGAGATTCAAATGTACATATT 59.717 33.333 9.21 3.31 0.00 1.28
30 31 7.566760 TGCGGAGATTCAAATGTACATATTT 57.433 32.000 9.21 0.00 0.00 1.40
31 32 7.639039 TGCGGAGATTCAAATGTACATATTTC 58.361 34.615 9.21 3.79 0.00 2.17
32 33 7.498900 TGCGGAGATTCAAATGTACATATTTCT 59.501 33.333 9.21 7.48 0.00 2.52
33 34 8.988934 GCGGAGATTCAAATGTACATATTTCTA 58.011 33.333 9.21 0.00 0.00 2.10
82 83 9.947669 ACTTATTATTGTCTACGTCATGTACTC 57.052 33.333 0.00 0.00 0.00 2.59
88 89 8.858003 ATTGTCTACGTCATGTACTCTATTTG 57.142 34.615 0.00 0.00 0.00 2.32
89 90 7.387119 TGTCTACGTCATGTACTCTATTTGT 57.613 36.000 0.00 0.00 0.00 2.83
90 91 8.496707 TGTCTACGTCATGTACTCTATTTGTA 57.503 34.615 0.00 0.00 0.00 2.41
91 92 8.949177 TGTCTACGTCATGTACTCTATTTGTAA 58.051 33.333 0.00 0.00 0.00 2.41
92 93 9.435802 GTCTACGTCATGTACTCTATTTGTAAG 57.564 37.037 0.00 0.00 0.00 2.34
93 94 8.127327 TCTACGTCATGTACTCTATTTGTAAGC 58.873 37.037 0.00 0.00 0.00 3.09
94 95 6.864342 ACGTCATGTACTCTATTTGTAAGCT 58.136 36.000 0.00 0.00 0.00 3.74
95 96 7.993101 ACGTCATGTACTCTATTTGTAAGCTA 58.007 34.615 0.00 0.00 0.00 3.32
96 97 8.464404 ACGTCATGTACTCTATTTGTAAGCTAA 58.536 33.333 0.00 0.00 0.00 3.09
97 98 9.464714 CGTCATGTACTCTATTTGTAAGCTAAT 57.535 33.333 0.00 0.00 0.00 1.73
140 141 5.597806 TCAATAGGACTAACTATGGTTGCG 58.402 41.667 4.47 0.00 36.92 4.85
141 142 5.128171 TCAATAGGACTAACTATGGTTGCGT 59.872 40.000 4.47 1.71 36.92 5.24
142 143 3.247006 AGGACTAACTATGGTTGCGTG 57.753 47.619 4.47 0.00 36.92 5.34
143 144 1.664151 GGACTAACTATGGTTGCGTGC 59.336 52.381 4.47 3.65 36.92 5.34
144 145 2.343101 GACTAACTATGGTTGCGTGCA 58.657 47.619 4.47 0.00 36.92 4.57
145 146 2.346803 ACTAACTATGGTTGCGTGCAG 58.653 47.619 4.47 0.00 36.92 4.41
146 147 1.665679 CTAACTATGGTTGCGTGCAGG 59.334 52.381 4.47 1.01 36.92 4.85
147 148 1.586154 AACTATGGTTGCGTGCAGGC 61.586 55.000 23.98 23.98 33.96 4.85
148 149 2.749839 TATGGTTGCGTGCAGGCC 60.750 61.111 27.10 13.41 0.00 5.19
152 153 2.749839 GTTGCGTGCAGGCCCATA 60.750 61.111 27.10 6.99 0.00 2.74
153 154 2.034843 TTGCGTGCAGGCCCATAA 59.965 55.556 27.10 12.83 0.00 1.90
154 155 1.604879 TTGCGTGCAGGCCCATAAA 60.605 52.632 27.10 12.46 0.00 1.40
155 156 0.969917 TTGCGTGCAGGCCCATAAAT 60.970 50.000 27.10 0.00 0.00 1.40
156 157 1.360192 GCGTGCAGGCCCATAAATC 59.640 57.895 20.50 0.00 0.00 2.17
157 158 1.383456 GCGTGCAGGCCCATAAATCA 61.383 55.000 20.50 0.00 0.00 2.57
158 159 0.664761 CGTGCAGGCCCATAAATCAG 59.335 55.000 0.00 0.00 0.00 2.90
159 160 1.035139 GTGCAGGCCCATAAATCAGG 58.965 55.000 0.00 0.00 0.00 3.86
160 161 0.925558 TGCAGGCCCATAAATCAGGA 59.074 50.000 0.00 0.00 0.00 3.86
161 162 1.133699 TGCAGGCCCATAAATCAGGAG 60.134 52.381 0.00 0.00 0.00 3.69
162 163 1.820877 GCAGGCCCATAAATCAGGAGG 60.821 57.143 0.00 0.00 0.00 4.30
163 164 1.496429 CAGGCCCATAAATCAGGAGGT 59.504 52.381 0.00 0.00 0.00 3.85
164 165 2.091665 CAGGCCCATAAATCAGGAGGTT 60.092 50.000 0.00 0.00 0.00 3.50
165 166 2.175715 AGGCCCATAAATCAGGAGGTTC 59.824 50.000 0.00 0.00 0.00 3.62
166 167 2.091885 GGCCCATAAATCAGGAGGTTCA 60.092 50.000 0.00 0.00 0.00 3.18
167 168 3.627237 GGCCCATAAATCAGGAGGTTCAA 60.627 47.826 0.00 0.00 0.00 2.69
168 169 4.218312 GCCCATAAATCAGGAGGTTCAAT 58.782 43.478 0.00 0.00 0.00 2.57
169 170 4.279420 GCCCATAAATCAGGAGGTTCAATC 59.721 45.833 0.00 0.00 0.00 2.67
170 171 5.699143 CCCATAAATCAGGAGGTTCAATCT 58.301 41.667 0.00 0.00 0.00 2.40
171 172 6.131961 CCCATAAATCAGGAGGTTCAATCTT 58.868 40.000 0.00 0.00 0.00 2.40
172 173 6.264067 CCCATAAATCAGGAGGTTCAATCTTC 59.736 42.308 0.00 0.00 0.00 2.87
173 174 6.830324 CCATAAATCAGGAGGTTCAATCTTCA 59.170 38.462 0.00 0.00 0.00 3.02
174 175 7.504911 CCATAAATCAGGAGGTTCAATCTTCAT 59.495 37.037 0.00 0.00 0.00 2.57
175 176 8.910944 CATAAATCAGGAGGTTCAATCTTCATT 58.089 33.333 0.00 0.00 0.00 2.57
178 179 9.484806 AAATCAGGAGGTTCAATCTTCATTATT 57.515 29.630 0.00 0.00 0.00 1.40
179 180 7.870509 TCAGGAGGTTCAATCTTCATTATTG 57.129 36.000 0.00 0.00 35.98 1.90
180 181 7.632861 TCAGGAGGTTCAATCTTCATTATTGA 58.367 34.615 0.00 0.00 40.63 2.57
181 182 8.108999 TCAGGAGGTTCAATCTTCATTATTGAA 58.891 33.333 7.05 7.05 46.08 2.69
208 209 9.844257 AATAAAAAGAAATGGTGTTGAAATGGA 57.156 25.926 0.00 0.00 0.00 3.41
210 211 8.750515 AAAAAGAAATGGTGTTGAAATGGATT 57.249 26.923 0.00 0.00 0.00 3.01
211 212 7.967890 AAAGAAATGGTGTTGAAATGGATTC 57.032 32.000 0.00 0.00 38.60 2.52
212 213 6.669125 AGAAATGGTGTTGAAATGGATTCA 57.331 33.333 0.00 0.00 46.22 2.57
225 226 8.537049 TGAAATGGATTCAATGCTAGTTTTTG 57.463 30.769 0.00 0.00 44.94 2.44
226 227 7.603404 TGAAATGGATTCAATGCTAGTTTTTGG 59.397 33.333 0.00 0.00 44.94 3.28
227 228 5.404466 TGGATTCAATGCTAGTTTTTGGG 57.596 39.130 0.00 0.00 0.00 4.12
228 229 4.222588 TGGATTCAATGCTAGTTTTTGGGG 59.777 41.667 0.00 0.00 0.00 4.96
229 230 4.466015 GGATTCAATGCTAGTTTTTGGGGA 59.534 41.667 0.00 0.00 0.00 4.81
230 231 5.046663 GGATTCAATGCTAGTTTTTGGGGAA 60.047 40.000 0.00 0.00 0.00 3.97
231 232 5.878406 TTCAATGCTAGTTTTTGGGGAAA 57.122 34.783 0.00 0.00 0.00 3.13
232 233 5.467035 TCAATGCTAGTTTTTGGGGAAAG 57.533 39.130 0.00 0.00 0.00 2.62
233 234 5.144100 TCAATGCTAGTTTTTGGGGAAAGA 58.856 37.500 0.00 0.00 0.00 2.52
234 235 5.600484 TCAATGCTAGTTTTTGGGGAAAGAA 59.400 36.000 0.00 0.00 0.00 2.52
235 236 4.929819 TGCTAGTTTTTGGGGAAAGAAC 57.070 40.909 0.00 0.00 0.00 3.01
236 237 4.282496 TGCTAGTTTTTGGGGAAAGAACA 58.718 39.130 0.00 0.00 0.00 3.18
237 238 4.098807 TGCTAGTTTTTGGGGAAAGAACAC 59.901 41.667 0.00 0.00 0.00 3.32
238 239 4.341235 GCTAGTTTTTGGGGAAAGAACACT 59.659 41.667 0.00 0.00 0.00 3.55
239 240 5.163447 GCTAGTTTTTGGGGAAAGAACACTT 60.163 40.000 0.00 0.00 0.00 3.16
240 241 5.755409 AGTTTTTGGGGAAAGAACACTTT 57.245 34.783 0.00 0.00 36.69 2.66
241 242 6.121776 AGTTTTTGGGGAAAGAACACTTTT 57.878 33.333 0.00 0.00 34.54 2.27
242 243 5.937540 AGTTTTTGGGGAAAGAACACTTTTG 59.062 36.000 0.00 0.00 34.54 2.44
243 244 5.746990 TTTTGGGGAAAGAACACTTTTGA 57.253 34.783 0.00 0.00 34.54 2.69
244 245 5.948742 TTTGGGGAAAGAACACTTTTGAT 57.051 34.783 0.00 0.00 34.54 2.57
245 246 5.948742 TTGGGGAAAGAACACTTTTGATT 57.051 34.783 0.00 0.00 34.54 2.57
246 247 5.275067 TGGGGAAAGAACACTTTTGATTG 57.725 39.130 0.00 0.00 34.54 2.67
247 248 4.959210 TGGGGAAAGAACACTTTTGATTGA 59.041 37.500 0.00 0.00 34.54 2.57
248 249 5.163457 TGGGGAAAGAACACTTTTGATTGAC 60.163 40.000 0.00 0.00 34.54 3.18
249 250 5.069119 GGGGAAAGAACACTTTTGATTGACT 59.931 40.000 0.00 0.00 34.54 3.41
250 251 6.209361 GGGAAAGAACACTTTTGATTGACTC 58.791 40.000 0.00 0.00 34.54 3.36
251 252 6.183360 GGGAAAGAACACTTTTGATTGACTCA 60.183 38.462 0.00 0.00 34.54 3.41
252 253 7.428826 GGAAAGAACACTTTTGATTGACTCAT 58.571 34.615 0.00 0.00 34.54 2.90
253 254 8.567948 GGAAAGAACACTTTTGATTGACTCATA 58.432 33.333 0.00 0.00 34.54 2.15
254 255 9.950680 GAAAGAACACTTTTGATTGACTCATAA 57.049 29.630 0.00 0.00 34.54 1.90
255 256 9.956720 AAAGAACACTTTTGATTGACTCATAAG 57.043 29.630 2.41 2.41 44.13 1.73
256 257 8.908786 AGAACACTTTTGATTGACTCATAAGA 57.091 30.769 9.29 0.00 42.34 2.10
257 258 9.342308 AGAACACTTTTGATTGACTCATAAGAA 57.658 29.630 9.29 0.00 42.34 2.52
258 259 9.950680 GAACACTTTTGATTGACTCATAAGAAA 57.049 29.630 9.29 0.00 42.34 2.52
280 281 5.994887 AAAATACAAACACTACGAGCACA 57.005 34.783 0.00 0.00 0.00 4.57
281 282 6.554334 AAAATACAAACACTACGAGCACAT 57.446 33.333 0.00 0.00 0.00 3.21
282 283 7.661127 AAAATACAAACACTACGAGCACATA 57.339 32.000 0.00 0.00 0.00 2.29
283 284 6.642683 AATACAAACACTACGAGCACATAC 57.357 37.500 0.00 0.00 0.00 2.39
284 285 3.985008 ACAAACACTACGAGCACATACA 58.015 40.909 0.00 0.00 0.00 2.29
285 286 3.739300 ACAAACACTACGAGCACATACAC 59.261 43.478 0.00 0.00 0.00 2.90
286 287 3.653539 AACACTACGAGCACATACACA 57.346 42.857 0.00 0.00 0.00 3.72
287 288 3.653539 ACACTACGAGCACATACACAA 57.346 42.857 0.00 0.00 0.00 3.33
288 289 3.314553 ACACTACGAGCACATACACAAC 58.685 45.455 0.00 0.00 0.00 3.32
289 290 3.005472 ACACTACGAGCACATACACAACT 59.995 43.478 0.00 0.00 0.00 3.16
290 291 3.987868 CACTACGAGCACATACACAACTT 59.012 43.478 0.00 0.00 0.00 2.66
291 292 4.090066 CACTACGAGCACATACACAACTTC 59.910 45.833 0.00 0.00 0.00 3.01
292 293 3.386768 ACGAGCACATACACAACTTCT 57.613 42.857 0.00 0.00 0.00 2.85
293 294 3.059884 ACGAGCACATACACAACTTCTG 58.940 45.455 0.00 0.00 0.00 3.02
294 295 2.159787 CGAGCACATACACAACTTCTGC 60.160 50.000 0.00 0.00 0.00 4.26
295 296 2.807967 GAGCACATACACAACTTCTGCA 59.192 45.455 0.00 0.00 0.00 4.41
296 297 3.415212 AGCACATACACAACTTCTGCAT 58.585 40.909 0.00 0.00 0.00 3.96
297 298 3.189910 AGCACATACACAACTTCTGCATG 59.810 43.478 0.00 0.00 0.00 4.06
298 299 3.189080 GCACATACACAACTTCTGCATGA 59.811 43.478 0.00 0.00 0.00 3.07
299 300 4.715896 CACATACACAACTTCTGCATGAC 58.284 43.478 0.00 0.00 0.00 3.06
300 301 3.753272 ACATACACAACTTCTGCATGACC 59.247 43.478 0.00 0.00 0.00 4.02
301 302 2.346766 ACACAACTTCTGCATGACCA 57.653 45.000 0.00 0.00 0.00 4.02
302 303 2.224606 ACACAACTTCTGCATGACCAG 58.775 47.619 0.00 0.00 0.00 4.00
303 304 1.538512 CACAACTTCTGCATGACCAGG 59.461 52.381 0.00 0.00 33.64 4.45
304 305 1.421268 ACAACTTCTGCATGACCAGGA 59.579 47.619 0.00 0.00 33.64 3.86
305 306 2.158623 ACAACTTCTGCATGACCAGGAA 60.159 45.455 0.00 0.00 33.64 3.36
306 307 2.486472 ACTTCTGCATGACCAGGAAG 57.514 50.000 0.00 7.78 33.64 3.46
307 308 1.093159 CTTCTGCATGACCAGGAAGC 58.907 55.000 0.00 0.00 33.64 3.86
308 309 0.674581 TTCTGCATGACCAGGAAGCG 60.675 55.000 0.00 0.00 33.64 4.68
309 310 2.747460 TGCATGACCAGGAAGCGC 60.747 61.111 0.00 0.00 0.00 5.92
310 311 2.747460 GCATGACCAGGAAGCGCA 60.747 61.111 11.47 0.00 0.00 6.09
311 312 3.044059 GCATGACCAGGAAGCGCAC 62.044 63.158 11.47 2.54 0.00 5.34
312 313 1.672030 CATGACCAGGAAGCGCACA 60.672 57.895 11.47 0.00 0.00 4.57
313 314 1.376424 ATGACCAGGAAGCGCACAG 60.376 57.895 11.47 0.00 0.00 3.66
314 315 1.830587 ATGACCAGGAAGCGCACAGA 61.831 55.000 11.47 0.00 0.00 3.41
315 316 2.029844 GACCAGGAAGCGCACAGAC 61.030 63.158 11.47 0.00 0.00 3.51
316 317 2.031012 CCAGGAAGCGCACAGACA 59.969 61.111 11.47 0.00 0.00 3.41
317 318 1.597854 CCAGGAAGCGCACAGACAA 60.598 57.895 11.47 0.00 0.00 3.18
318 319 1.571460 CAGGAAGCGCACAGACAAC 59.429 57.895 11.47 0.00 0.00 3.32
319 320 1.146041 AGGAAGCGCACAGACAACA 59.854 52.632 11.47 0.00 0.00 3.33
320 321 1.160329 AGGAAGCGCACAGACAACAC 61.160 55.000 11.47 0.00 0.00 3.32
321 322 1.279840 GAAGCGCACAGACAACACC 59.720 57.895 11.47 0.00 0.00 4.16
322 323 2.430080 GAAGCGCACAGACAACACCG 62.430 60.000 11.47 0.00 0.00 4.94
323 324 2.916502 AAGCGCACAGACAACACCGA 62.917 55.000 11.47 0.00 0.00 4.69
324 325 2.928361 CGCACAGACAACACCGAC 59.072 61.111 0.00 0.00 0.00 4.79
325 326 1.880796 CGCACAGACAACACCGACA 60.881 57.895 0.00 0.00 0.00 4.35
326 327 1.641677 GCACAGACAACACCGACAC 59.358 57.895 0.00 0.00 0.00 3.67
327 328 1.087202 GCACAGACAACACCGACACA 61.087 55.000 0.00 0.00 0.00 3.72
328 329 1.581934 CACAGACAACACCGACACAT 58.418 50.000 0.00 0.00 0.00 3.21
329 330 2.749776 CACAGACAACACCGACACATA 58.250 47.619 0.00 0.00 0.00 2.29
330 331 2.731451 CACAGACAACACCGACACATAG 59.269 50.000 0.00 0.00 0.00 2.23
331 332 2.288825 ACAGACAACACCGACACATAGG 60.289 50.000 0.00 0.00 0.00 2.57
332 333 1.076332 GACAACACCGACACATAGGC 58.924 55.000 0.00 0.00 0.00 3.93
333 334 0.394938 ACAACACCGACACATAGGCA 59.605 50.000 0.00 0.00 0.00 4.75
334 335 1.202710 ACAACACCGACACATAGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
335 336 1.464608 CAACACCGACACATAGGCAAG 59.535 52.381 0.00 0.00 0.00 4.01
336 337 0.973632 ACACCGACACATAGGCAAGA 59.026 50.000 0.00 0.00 0.00 3.02
337 338 1.555075 ACACCGACACATAGGCAAGAT 59.445 47.619 0.00 0.00 0.00 2.40
338 339 2.764010 ACACCGACACATAGGCAAGATA 59.236 45.455 0.00 0.00 0.00 1.98
339 340 3.196901 ACACCGACACATAGGCAAGATAA 59.803 43.478 0.00 0.00 0.00 1.75
340 341 4.188462 CACCGACACATAGGCAAGATAAA 58.812 43.478 0.00 0.00 0.00 1.40
341 342 4.634004 CACCGACACATAGGCAAGATAAAA 59.366 41.667 0.00 0.00 0.00 1.52
342 343 5.123186 CACCGACACATAGGCAAGATAAAAA 59.877 40.000 0.00 0.00 0.00 1.94
361 362 4.365899 AAAAACACGACCTCCAAACTTC 57.634 40.909 0.00 0.00 0.00 3.01
362 363 3.277142 AAACACGACCTCCAAACTTCT 57.723 42.857 0.00 0.00 0.00 2.85
363 364 3.277142 AACACGACCTCCAAACTTCTT 57.723 42.857 0.00 0.00 0.00 2.52
364 365 2.561569 ACACGACCTCCAAACTTCTTG 58.438 47.619 0.00 0.00 0.00 3.02
365 366 1.264288 CACGACCTCCAAACTTCTTGC 59.736 52.381 0.00 0.00 0.00 4.01
366 367 1.141053 ACGACCTCCAAACTTCTTGCT 59.859 47.619 0.00 0.00 0.00 3.91
367 368 1.532868 CGACCTCCAAACTTCTTGCTG 59.467 52.381 0.00 0.00 0.00 4.41
368 369 2.806745 CGACCTCCAAACTTCTTGCTGA 60.807 50.000 0.00 0.00 0.00 4.26
369 370 3.214328 GACCTCCAAACTTCTTGCTGAA 58.786 45.455 0.00 0.00 0.00 3.02
370 371 3.631250 ACCTCCAAACTTCTTGCTGAAA 58.369 40.909 0.00 0.00 33.79 2.69
371 372 3.381590 ACCTCCAAACTTCTTGCTGAAAC 59.618 43.478 0.00 0.00 33.79 2.78
372 373 3.548818 CCTCCAAACTTCTTGCTGAAACG 60.549 47.826 0.00 0.00 33.79 3.60
373 374 3.275143 TCCAAACTTCTTGCTGAAACGA 58.725 40.909 0.00 0.00 33.79 3.85
374 375 3.692101 TCCAAACTTCTTGCTGAAACGAA 59.308 39.130 0.00 0.00 33.79 3.85
375 376 3.791353 CCAAACTTCTTGCTGAAACGAAC 59.209 43.478 0.00 0.00 33.79 3.95
376 377 4.438744 CCAAACTTCTTGCTGAAACGAACT 60.439 41.667 0.00 0.00 33.79 3.01
377 378 5.220777 CCAAACTTCTTGCTGAAACGAACTA 60.221 40.000 0.00 0.00 33.79 2.24
378 379 6.255215 CAAACTTCTTGCTGAAACGAACTAA 58.745 36.000 0.00 0.00 33.79 2.24
379 380 6.431198 AACTTCTTGCTGAAACGAACTAAA 57.569 33.333 0.00 0.00 33.79 1.85
380 381 6.049263 ACTTCTTGCTGAAACGAACTAAAG 57.951 37.500 0.00 0.00 33.79 1.85
381 382 4.468095 TCTTGCTGAAACGAACTAAAGC 57.532 40.909 0.00 0.00 0.00 3.51
382 383 4.127171 TCTTGCTGAAACGAACTAAAGCT 58.873 39.130 0.00 0.00 0.00 3.74
383 384 3.878086 TGCTGAAACGAACTAAAGCTG 57.122 42.857 0.00 0.00 0.00 4.24
384 385 2.548057 TGCTGAAACGAACTAAAGCTGG 59.452 45.455 0.00 0.00 0.00 4.85
385 386 2.665794 GCTGAAACGAACTAAAGCTGGC 60.666 50.000 0.00 0.00 0.00 4.85
386 387 2.548057 CTGAAACGAACTAAAGCTGGCA 59.452 45.455 0.00 0.00 0.00 4.92
387 388 2.548057 TGAAACGAACTAAAGCTGGCAG 59.452 45.455 10.94 10.94 0.00 4.85
388 389 2.256117 AACGAACTAAAGCTGGCAGT 57.744 45.000 17.16 0.00 0.00 4.40
389 390 3.396260 AACGAACTAAAGCTGGCAGTA 57.604 42.857 17.16 0.00 0.00 2.74
390 391 2.960819 ACGAACTAAAGCTGGCAGTAG 58.039 47.619 17.16 12.25 0.00 2.57
391 392 2.299297 ACGAACTAAAGCTGGCAGTAGT 59.701 45.455 17.16 12.91 0.00 2.73
392 393 3.508793 ACGAACTAAAGCTGGCAGTAGTA 59.491 43.478 17.16 4.82 0.00 1.82
393 394 3.858238 CGAACTAAAGCTGGCAGTAGTAC 59.142 47.826 17.16 0.00 0.00 2.73
394 395 3.889520 ACTAAAGCTGGCAGTAGTACC 57.110 47.619 17.16 0.00 0.00 3.34
395 396 2.500504 ACTAAAGCTGGCAGTAGTACCC 59.499 50.000 17.16 0.00 0.00 3.69
396 397 1.657804 AAAGCTGGCAGTAGTACCCT 58.342 50.000 17.16 0.00 0.00 4.34
397 398 1.196012 AAGCTGGCAGTAGTACCCTC 58.804 55.000 17.16 0.00 0.00 4.30
398 399 0.041238 AGCTGGCAGTAGTACCCTCA 59.959 55.000 17.16 0.00 0.00 3.86
399 400 0.461961 GCTGGCAGTAGTACCCTCAG 59.538 60.000 17.16 3.70 0.00 3.35
400 401 0.461961 CTGGCAGTAGTACCCTCAGC 59.538 60.000 6.28 0.00 0.00 4.26
401 402 0.252057 TGGCAGTAGTACCCTCAGCA 60.252 55.000 0.00 0.00 0.00 4.41
402 403 1.123928 GGCAGTAGTACCCTCAGCAT 58.876 55.000 0.00 0.00 0.00 3.79
403 404 1.069358 GGCAGTAGTACCCTCAGCATC 59.931 57.143 0.00 0.00 0.00 3.91
404 405 1.757118 GCAGTAGTACCCTCAGCATCA 59.243 52.381 0.00 0.00 0.00 3.07
405 406 2.223923 GCAGTAGTACCCTCAGCATCAG 60.224 54.545 0.00 0.00 0.00 2.90
406 407 2.035632 AGTAGTACCCTCAGCATCAGC 58.964 52.381 0.00 0.00 42.56 4.26
407 408 1.069358 GTAGTACCCTCAGCATCAGCC 59.931 57.143 0.00 0.00 43.56 4.85
408 409 1.227380 GTACCCTCAGCATCAGCCG 60.227 63.158 0.00 0.00 43.56 5.52
409 410 1.381191 TACCCTCAGCATCAGCCGA 60.381 57.895 0.00 0.00 43.56 5.54
410 411 1.676678 TACCCTCAGCATCAGCCGAC 61.677 60.000 0.00 0.00 43.56 4.79
411 412 2.584418 CCTCAGCATCAGCCGACG 60.584 66.667 0.00 0.00 43.56 5.12
412 413 2.584418 CTCAGCATCAGCCGACGG 60.584 66.667 10.29 10.29 43.56 4.79
413 414 3.362399 CTCAGCATCAGCCGACGGT 62.362 63.158 16.73 0.00 43.56 4.83
414 415 3.190849 CAGCATCAGCCGACGGTG 61.191 66.667 16.73 12.44 43.56 4.94
419 420 3.450507 TCAGCCGACGGTGAGAAA 58.549 55.556 16.73 0.00 41.50 2.52
420 421 1.743391 TCAGCCGACGGTGAGAAAA 59.257 52.632 16.73 0.00 41.50 2.29
421 422 0.105224 TCAGCCGACGGTGAGAAAAA 59.895 50.000 16.73 0.00 41.50 1.94
422 423 0.512952 CAGCCGACGGTGAGAAAAAG 59.487 55.000 16.73 0.00 40.02 2.27
423 424 0.391597 AGCCGACGGTGAGAAAAAGA 59.608 50.000 16.73 0.00 0.00 2.52
424 425 1.002087 AGCCGACGGTGAGAAAAAGAT 59.998 47.619 16.73 0.00 0.00 2.40
425 426 1.128692 GCCGACGGTGAGAAAAAGATG 59.871 52.381 16.73 0.00 0.00 2.90
426 427 1.128692 CCGACGGTGAGAAAAAGATGC 59.871 52.381 5.48 0.00 0.00 3.91
427 428 2.069273 CGACGGTGAGAAAAAGATGCT 58.931 47.619 0.00 0.00 0.00 3.79
428 429 2.480419 CGACGGTGAGAAAAAGATGCTT 59.520 45.455 0.00 0.00 0.00 3.91
429 430 3.423645 CGACGGTGAGAAAAAGATGCTTC 60.424 47.826 0.00 0.00 0.00 3.86
430 431 3.476552 ACGGTGAGAAAAAGATGCTTCA 58.523 40.909 2.07 0.00 0.00 3.02
431 432 3.882888 ACGGTGAGAAAAAGATGCTTCAA 59.117 39.130 2.07 0.00 0.00 2.69
432 433 4.222114 CGGTGAGAAAAAGATGCTTCAAC 58.778 43.478 2.07 0.00 0.00 3.18
433 434 4.261155 CGGTGAGAAAAAGATGCTTCAACA 60.261 41.667 2.07 0.00 0.00 3.33
434 435 5.591099 GGTGAGAAAAAGATGCTTCAACAA 58.409 37.500 2.07 0.00 0.00 2.83
435 436 6.218746 GGTGAGAAAAAGATGCTTCAACAAT 58.781 36.000 2.07 0.00 0.00 2.71
436 437 6.145048 GGTGAGAAAAAGATGCTTCAACAATG 59.855 38.462 2.07 0.00 0.00 2.82
437 438 6.698766 GTGAGAAAAAGATGCTTCAACAATGT 59.301 34.615 2.07 0.00 0.00 2.71
438 439 7.223387 GTGAGAAAAAGATGCTTCAACAATGTT 59.777 33.333 2.07 0.00 0.00 2.71
439 440 7.223193 TGAGAAAAAGATGCTTCAACAATGTTG 59.777 33.333 19.23 19.23 0.00 3.33
443 444 6.639632 AAGATGCTTCAACAATGTTGTAGT 57.360 33.333 25.87 12.99 41.31 2.73
456 457 6.267471 ACAATGTTGTAGTTCATGGGTTTCAT 59.733 34.615 0.00 0.00 40.16 2.57
458 459 7.630242 ATGTTGTAGTTCATGGGTTTCATAG 57.370 36.000 0.00 0.00 34.12 2.23
459 460 6.774673 TGTTGTAGTTCATGGGTTTCATAGA 58.225 36.000 0.00 0.00 34.12 1.98
460 461 6.878923 TGTTGTAGTTCATGGGTTTCATAGAG 59.121 38.462 0.00 0.00 34.12 2.43
466 469 7.331791 AGTTCATGGGTTTCATAGAGTAGAAC 58.668 38.462 0.00 0.00 34.35 3.01
469 472 6.212589 TCATGGGTTTCATAGAGTAGAACACA 59.787 38.462 0.00 0.00 34.12 3.72
471 474 6.640518 TGGGTTTCATAGAGTAGAACACATC 58.359 40.000 0.00 0.00 0.00 3.06
485 488 3.594603 ACACATCCGGACAAACTCTAG 57.405 47.619 6.12 0.00 0.00 2.43
520 523 3.802948 AGAGGATGACGTGAATACCAC 57.197 47.619 0.00 0.00 42.30 4.16
530 533 2.945008 CGTGAATACCACCATCATTGCT 59.055 45.455 0.00 0.00 42.76 3.91
585 588 2.882137 TCATTCCGGAACCAAACTTGTC 59.118 45.455 21.56 0.00 0.00 3.18
758 786 1.683917 GGCATAGCCTTCGAGAAGAGA 59.316 52.381 13.90 0.04 46.69 3.10
1041 1069 2.529389 ACCGCCTTCTCCAACCCT 60.529 61.111 0.00 0.00 0.00 4.34
1068 1096 2.197324 CTCCTCTCCTCCTCCCCG 59.803 72.222 0.00 0.00 0.00 5.73
1497 1909 2.108250 CAAGAAGGTCAAGGGGAAGGAA 59.892 50.000 0.00 0.00 0.00 3.36
1680 2092 3.157252 GCATCAGCGGGAGGAGGA 61.157 66.667 0.00 0.00 0.00 3.71
1974 2386 0.895530 ACACGTCGTCCTGATCCATT 59.104 50.000 0.00 0.00 0.00 3.16
1984 2396 2.158769 TCCTGATCCATTCCACCAATCG 60.159 50.000 0.00 0.00 0.00 3.34
1985 2397 1.605710 CTGATCCATTCCACCAATCGC 59.394 52.381 0.00 0.00 0.00 4.58
1986 2398 0.954452 GATCCATTCCACCAATCGCC 59.046 55.000 0.00 0.00 0.00 5.54
1987 2399 0.468029 ATCCATTCCACCAATCGCCC 60.468 55.000 0.00 0.00 0.00 6.13
1988 2400 1.076777 CCATTCCACCAATCGCCCT 60.077 57.895 0.00 0.00 0.00 5.19
1989 2401 0.684153 CCATTCCACCAATCGCCCTT 60.684 55.000 0.00 0.00 0.00 3.95
1990 2402 0.740737 CATTCCACCAATCGCCCTTC 59.259 55.000 0.00 0.00 0.00 3.46
1991 2403 0.395724 ATTCCACCAATCGCCCTTCC 60.396 55.000 0.00 0.00 0.00 3.46
1992 2404 1.784301 TTCCACCAATCGCCCTTCCA 61.784 55.000 0.00 0.00 0.00 3.53
1993 2405 1.076777 CCACCAATCGCCCTTCCAT 60.077 57.895 0.00 0.00 0.00 3.41
1994 2406 1.386525 CCACCAATCGCCCTTCCATG 61.387 60.000 0.00 0.00 0.00 3.66
1995 2407 1.754234 ACCAATCGCCCTTCCATGC 60.754 57.895 0.00 0.00 0.00 4.06
1996 2408 1.454479 CCAATCGCCCTTCCATGCT 60.454 57.895 0.00 0.00 0.00 3.79
1997 2409 0.179020 CCAATCGCCCTTCCATGCTA 60.179 55.000 0.00 0.00 0.00 3.49
1998 2410 1.546323 CCAATCGCCCTTCCATGCTAT 60.546 52.381 0.00 0.00 0.00 2.97
1999 2411 1.538512 CAATCGCCCTTCCATGCTATG 59.461 52.381 0.00 0.00 0.00 2.23
2003 2415 1.789078 GCCCTTCCATGCTATGCACG 61.789 60.000 0.00 0.00 43.04 5.34
2053 2469 5.427036 ACTCGCTAGCTAGTTACTTCATC 57.573 43.478 21.62 1.21 0.00 2.92
2059 2475 5.859648 GCTAGCTAGTTACTTCATCGATTCC 59.140 44.000 21.62 0.00 0.00 3.01
2060 2476 6.294286 GCTAGCTAGTTACTTCATCGATTCCT 60.294 42.308 21.62 0.00 0.00 3.36
2093 2516 4.212847 CACTAGGCAATGTAATGCTAGCAG 59.787 45.833 23.89 8.53 45.68 4.24
2097 2520 5.243981 AGGCAATGTAATGCTAGCAGATAG 58.756 41.667 23.89 9.80 45.68 2.08
2099 2522 5.106791 GGCAATGTAATGCTAGCAGATAGTG 60.107 44.000 23.89 19.70 45.68 2.74
2100 2523 5.468072 GCAATGTAATGCTAGCAGATAGTGT 59.532 40.000 23.89 0.56 43.06 3.55
2101 2524 6.646653 GCAATGTAATGCTAGCAGATAGTGTA 59.353 38.462 23.89 4.35 43.06 2.90
2102 2525 7.171508 GCAATGTAATGCTAGCAGATAGTGTAA 59.828 37.037 23.89 2.09 43.06 2.41
2103 2526 9.212641 CAATGTAATGCTAGCAGATAGTGTAAT 57.787 33.333 23.89 0.00 33.65 1.89
2125 2548 7.938140 AATATTTTCCTCATTTTCGTGGAGA 57.062 32.000 0.00 0.00 30.61 3.71
2127 2550 9.627123 AATATTTTCCTCATTTTCGTGGAGATA 57.373 29.630 0.00 0.00 30.61 1.98
2353 2798 6.419980 TTTGCAAACATCTTTCCTTTGTTG 57.580 33.333 8.05 0.00 34.04 3.33
2354 2799 5.083533 TGCAAACATCTTTCCTTTGTTGT 57.916 34.783 0.00 0.00 34.04 3.32
2356 2801 6.634805 TGCAAACATCTTTCCTTTGTTGTTA 58.365 32.000 0.00 0.00 34.04 2.41
2357 2802 6.756074 TGCAAACATCTTTCCTTTGTTGTTAG 59.244 34.615 0.00 0.00 34.04 2.34
2358 2803 6.292328 GCAAACATCTTTCCTTTGTTGTTAGC 60.292 38.462 0.00 0.00 34.04 3.09
2359 2804 6.715347 AACATCTTTCCTTTGTTGTTAGCT 57.285 33.333 0.00 0.00 32.61 3.32
2360 2805 6.715347 ACATCTTTCCTTTGTTGTTAGCTT 57.285 33.333 0.00 0.00 0.00 3.74
2361 2806 7.817418 ACATCTTTCCTTTGTTGTTAGCTTA 57.183 32.000 0.00 0.00 0.00 3.09
2362 2807 7.875971 ACATCTTTCCTTTGTTGTTAGCTTAG 58.124 34.615 0.00 0.00 0.00 2.18
2363 2808 6.313744 TCTTTCCTTTGTTGTTAGCTTAGC 57.686 37.500 0.00 0.00 0.00 3.09
2364 2809 5.240844 TCTTTCCTTTGTTGTTAGCTTAGCC 59.759 40.000 0.00 0.00 0.00 3.93
2365 2810 4.367039 TCCTTTGTTGTTAGCTTAGCCT 57.633 40.909 0.00 0.00 0.00 4.58
2366 2811 5.492855 TCCTTTGTTGTTAGCTTAGCCTA 57.507 39.130 0.00 0.00 0.00 3.93
2367 2812 5.488341 TCCTTTGTTGTTAGCTTAGCCTAG 58.512 41.667 0.00 0.00 0.00 3.02
2368 2813 4.095036 CCTTTGTTGTTAGCTTAGCCTAGC 59.905 45.833 0.00 0.00 41.53 3.42
2404 2849 4.645136 ACTGTAAACTCACTCACTCACTGA 59.355 41.667 0.00 0.00 0.00 3.41
2441 2893 2.556534 GCTACATGCAGCTTTCCAAG 57.443 50.000 10.85 0.00 42.31 3.61
2455 2907 2.113860 TCCAAGTGCATGGAAGCTAC 57.886 50.000 6.57 0.00 46.36 3.58
2456 2908 1.350684 TCCAAGTGCATGGAAGCTACA 59.649 47.619 6.57 0.00 46.36 2.74
2457 2909 2.025981 TCCAAGTGCATGGAAGCTACAT 60.026 45.455 6.57 0.00 46.36 2.29
2458 2910 2.098607 CCAAGTGCATGGAAGCTACATG 59.901 50.000 21.02 21.02 46.45 3.21
2463 2915 2.417339 CATGGAAGCTACATGCATGC 57.583 50.000 26.53 11.82 45.94 4.06
2464 2916 1.679153 CATGGAAGCTACATGCATGCA 59.321 47.619 26.53 25.04 44.11 3.96
2465 2917 2.061509 TGGAAGCTACATGCATGCAT 57.938 45.000 27.46 27.46 45.94 3.96
2495 2951 2.373169 ACCCATCCATCGATGTTGCTAT 59.627 45.455 23.27 6.63 43.87 2.97
2496 2952 3.582647 ACCCATCCATCGATGTTGCTATA 59.417 43.478 23.27 1.25 43.87 1.31
2497 2953 4.186926 CCCATCCATCGATGTTGCTATAG 58.813 47.826 23.27 6.20 43.87 1.31
2498 2954 3.620374 CCATCCATCGATGTTGCTATAGC 59.380 47.826 23.27 18.18 43.87 2.97
2499 2955 4.502016 CATCCATCGATGTTGCTATAGCT 58.498 43.478 24.61 5.05 40.97 3.32
2500 2956 4.607293 TCCATCGATGTTGCTATAGCTT 57.393 40.909 24.61 7.87 42.66 3.74
2501 2957 4.560128 TCCATCGATGTTGCTATAGCTTC 58.440 43.478 24.61 17.01 42.66 3.86
2502 2958 4.281941 TCCATCGATGTTGCTATAGCTTCT 59.718 41.667 24.61 7.70 42.66 2.85
2503 2959 4.993584 CCATCGATGTTGCTATAGCTTCTT 59.006 41.667 24.61 14.79 42.66 2.52
2525 2981 2.356665 TCTCCTCCTTCTCCTCATCG 57.643 55.000 0.00 0.00 0.00 3.84
2584 3040 1.414919 TCTAACAACGTGGGTTCTGCT 59.585 47.619 8.91 0.00 32.98 4.24
2754 3212 6.996180 TTTCTAGTGAGAGGAAAGAAAGGA 57.004 37.500 0.00 0.00 32.70 3.36
2778 3236 3.824425 GCAGGGCATGATGGGGGA 61.824 66.667 1.99 0.00 0.00 4.81
2840 3298 4.280174 GCTTATCGTGTAGGAAGGGTATCA 59.720 45.833 0.00 0.00 0.00 2.15
2869 3327 5.068198 CCTGCTTGTATATGTTTGCCTGATT 59.932 40.000 0.00 0.00 0.00 2.57
2870 3328 5.893687 TGCTTGTATATGTTTGCCTGATTG 58.106 37.500 0.00 0.00 0.00 2.67
2903 3370 1.339438 TGCAGAAGCCAGAATCCACTC 60.339 52.381 0.00 0.00 41.13 3.51
2930 3397 1.471287 CCCTGACTGCATCATGTGTTG 59.529 52.381 0.00 0.00 36.48 3.33
2955 3422 7.611855 TGATGCATACTAGCTAGATAGTGCTTA 59.388 37.037 26.97 10.44 40.35 3.09
2966 3433 8.744652 AGCTAGATAGTGCTTATTTGACGATAT 58.255 33.333 0.00 0.00 35.86 1.63
2967 3434 9.360093 GCTAGATAGTGCTTATTTGACGATATT 57.640 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.438087 ACATTTGAATCTCCGCAACTCTG 59.562 43.478 0.00 0.00 0.00 3.35
1 2 3.679389 ACATTTGAATCTCCGCAACTCT 58.321 40.909 0.00 0.00 0.00 3.24
2 3 4.391830 TGTACATTTGAATCTCCGCAACTC 59.608 41.667 0.00 0.00 0.00 3.01
3 4 4.323417 TGTACATTTGAATCTCCGCAACT 58.677 39.130 0.00 0.00 0.00 3.16
4 5 4.678509 TGTACATTTGAATCTCCGCAAC 57.321 40.909 0.00 0.00 0.00 4.17
5 6 7.566760 AATATGTACATTTGAATCTCCGCAA 57.433 32.000 14.77 0.00 0.00 4.85
6 7 7.498900 AGAAATATGTACATTTGAATCTCCGCA 59.501 33.333 14.77 0.00 0.00 5.69
7 8 7.865707 AGAAATATGTACATTTGAATCTCCGC 58.134 34.615 14.77 0.00 0.00 5.54
56 57 9.947669 GAGTACATGACGTAGACAATAATAAGT 57.052 33.333 0.00 0.00 35.03 2.24
62 63 9.946165 CAAATAGAGTACATGACGTAGACAATA 57.054 33.333 0.00 0.00 35.03 1.90
63 64 8.467598 ACAAATAGAGTACATGACGTAGACAAT 58.532 33.333 0.00 0.00 35.03 2.71
64 65 7.823665 ACAAATAGAGTACATGACGTAGACAA 58.176 34.615 0.00 0.00 35.03 3.18
65 66 7.387119 ACAAATAGAGTACATGACGTAGACA 57.613 36.000 0.00 0.00 36.25 3.41
66 67 9.435802 CTTACAAATAGAGTACATGACGTAGAC 57.564 37.037 0.00 0.00 0.00 2.59
67 68 8.127327 GCTTACAAATAGAGTACATGACGTAGA 58.873 37.037 0.00 0.00 0.00 2.59
68 69 8.129840 AGCTTACAAATAGAGTACATGACGTAG 58.870 37.037 0.00 0.00 0.00 3.51
69 70 7.993101 AGCTTACAAATAGAGTACATGACGTA 58.007 34.615 0.00 0.00 0.00 3.57
70 71 6.864342 AGCTTACAAATAGAGTACATGACGT 58.136 36.000 0.00 0.00 0.00 4.34
71 72 8.851960 TTAGCTTACAAATAGAGTACATGACG 57.148 34.615 0.00 0.00 0.00 4.35
111 112 8.832735 AACCATAGTTAGTCCTATTGAGGAAAA 58.167 33.333 0.00 0.00 43.67 2.29
112 113 8.265055 CAACCATAGTTAGTCCTATTGAGGAAA 58.735 37.037 0.00 0.00 43.67 3.13
113 114 7.635089 GCAACCATAGTTAGTCCTATTGAGGAA 60.635 40.741 0.00 0.00 43.67 3.36
114 115 6.183360 GCAACCATAGTTAGTCCTATTGAGGA 60.183 42.308 0.00 0.00 41.42 3.71
115 116 5.992217 GCAACCATAGTTAGTCCTATTGAGG 59.008 44.000 0.00 0.00 38.20 3.86
116 117 5.692204 CGCAACCATAGTTAGTCCTATTGAG 59.308 44.000 0.00 0.00 33.27 3.02
117 118 5.128171 ACGCAACCATAGTTAGTCCTATTGA 59.872 40.000 0.00 0.00 33.27 2.57
118 119 5.234329 CACGCAACCATAGTTAGTCCTATTG 59.766 44.000 0.00 0.00 33.27 1.90
119 120 5.357257 CACGCAACCATAGTTAGTCCTATT 58.643 41.667 0.00 0.00 33.27 1.73
120 121 4.739735 GCACGCAACCATAGTTAGTCCTAT 60.740 45.833 0.00 0.00 33.27 2.57
121 122 3.429822 GCACGCAACCATAGTTAGTCCTA 60.430 47.826 0.00 0.00 33.27 2.94
122 123 2.677037 GCACGCAACCATAGTTAGTCCT 60.677 50.000 0.00 0.00 33.27 3.85
123 124 1.664151 GCACGCAACCATAGTTAGTCC 59.336 52.381 0.00 0.00 33.27 3.85
124 125 2.343101 TGCACGCAACCATAGTTAGTC 58.657 47.619 0.00 0.00 33.27 2.59
125 126 2.346803 CTGCACGCAACCATAGTTAGT 58.653 47.619 0.00 0.00 33.27 2.24
126 127 1.665679 CCTGCACGCAACCATAGTTAG 59.334 52.381 0.00 0.00 33.27 2.34
127 128 1.732941 CCTGCACGCAACCATAGTTA 58.267 50.000 0.00 0.00 33.27 2.24
128 129 1.586154 GCCTGCACGCAACCATAGTT 61.586 55.000 2.56 0.00 36.33 2.24
129 130 2.040544 GCCTGCACGCAACCATAGT 61.041 57.895 2.56 0.00 0.00 2.12
130 131 2.764314 GGCCTGCACGCAACCATAG 61.764 63.158 9.92 0.00 0.00 2.23
131 132 2.749839 GGCCTGCACGCAACCATA 60.750 61.111 9.92 0.00 0.00 2.74
135 136 1.872197 TTTATGGGCCTGCACGCAAC 61.872 55.000 4.53 2.77 35.97 4.17
136 137 0.969917 ATTTATGGGCCTGCACGCAA 60.970 50.000 4.53 0.00 35.97 4.85
137 138 1.379710 ATTTATGGGCCTGCACGCA 60.380 52.632 4.53 3.29 36.87 5.24
138 139 1.360192 GATTTATGGGCCTGCACGC 59.640 57.895 4.53 0.00 0.00 5.34
139 140 0.664761 CTGATTTATGGGCCTGCACG 59.335 55.000 4.53 0.00 0.00 5.34
140 141 1.035139 CCTGATTTATGGGCCTGCAC 58.965 55.000 4.53 0.00 0.00 4.57
141 142 0.925558 TCCTGATTTATGGGCCTGCA 59.074 50.000 4.53 0.00 0.00 4.41
142 143 1.613836 CTCCTGATTTATGGGCCTGC 58.386 55.000 4.53 0.00 0.00 4.85
143 144 1.496429 ACCTCCTGATTTATGGGCCTG 59.504 52.381 4.53 0.00 0.00 4.85
144 145 1.912862 ACCTCCTGATTTATGGGCCT 58.087 50.000 4.53 0.00 0.00 5.19
145 146 2.091885 TGAACCTCCTGATTTATGGGCC 60.092 50.000 0.00 0.00 0.00 5.80
146 147 3.297134 TGAACCTCCTGATTTATGGGC 57.703 47.619 0.00 0.00 0.00 5.36
147 148 5.699143 AGATTGAACCTCCTGATTTATGGG 58.301 41.667 0.00 0.00 0.00 4.00
148 149 6.830324 TGAAGATTGAACCTCCTGATTTATGG 59.170 38.462 0.00 0.00 0.00 2.74
149 150 7.870509 TGAAGATTGAACCTCCTGATTTATG 57.129 36.000 0.00 0.00 0.00 1.90
152 153 9.484806 AATAATGAAGATTGAACCTCCTGATTT 57.515 29.630 0.00 0.00 0.00 2.17
153 154 8.910944 CAATAATGAAGATTGAACCTCCTGATT 58.089 33.333 0.00 0.00 36.57 2.57
154 155 8.277197 TCAATAATGAAGATTGAACCTCCTGAT 58.723 33.333 0.00 0.00 39.71 2.90
155 156 7.632861 TCAATAATGAAGATTGAACCTCCTGA 58.367 34.615 0.00 0.00 39.71 3.86
156 157 7.870509 TCAATAATGAAGATTGAACCTCCTG 57.129 36.000 0.00 0.00 39.71 3.86
182 183 9.844257 TCCATTTCAACACCATTTCTTTTTATT 57.156 25.926 0.00 0.00 0.00 1.40
184 185 9.844257 AATCCATTTCAACACCATTTCTTTTTA 57.156 25.926 0.00 0.00 0.00 1.52
185 186 8.750515 AATCCATTTCAACACCATTTCTTTTT 57.249 26.923 0.00 0.00 0.00 1.94
186 187 7.992033 TGAATCCATTTCAACACCATTTCTTTT 59.008 29.630 0.00 0.00 41.38 2.27
187 188 7.507829 TGAATCCATTTCAACACCATTTCTTT 58.492 30.769 0.00 0.00 41.38 2.52
188 189 7.065120 TGAATCCATTTCAACACCATTTCTT 57.935 32.000 0.00 0.00 41.38 2.52
189 190 6.669125 TGAATCCATTTCAACACCATTTCT 57.331 33.333 0.00 0.00 41.38 2.52
200 201 7.603404 CCAAAAACTAGCATTGAATCCATTTCA 59.397 33.333 4.75 0.00 42.62 2.69
201 202 7.064966 CCCAAAAACTAGCATTGAATCCATTTC 59.935 37.037 4.75 0.00 34.72 2.17
202 203 6.880529 CCCAAAAACTAGCATTGAATCCATTT 59.119 34.615 4.75 0.00 0.00 2.32
203 204 6.408869 CCCAAAAACTAGCATTGAATCCATT 58.591 36.000 4.75 0.00 0.00 3.16
204 205 5.104817 CCCCAAAAACTAGCATTGAATCCAT 60.105 40.000 4.75 0.00 0.00 3.41
205 206 4.222588 CCCCAAAAACTAGCATTGAATCCA 59.777 41.667 4.75 0.00 0.00 3.41
206 207 4.466015 TCCCCAAAAACTAGCATTGAATCC 59.534 41.667 4.75 0.00 0.00 3.01
207 208 5.659440 TCCCCAAAAACTAGCATTGAATC 57.341 39.130 4.75 0.00 0.00 2.52
208 209 6.269769 TCTTTCCCCAAAAACTAGCATTGAAT 59.730 34.615 4.75 0.00 0.00 2.57
209 210 5.600484 TCTTTCCCCAAAAACTAGCATTGAA 59.400 36.000 4.75 0.00 0.00 2.69
210 211 5.144100 TCTTTCCCCAAAAACTAGCATTGA 58.856 37.500 4.75 0.00 0.00 2.57
211 212 5.467035 TCTTTCCCCAAAAACTAGCATTG 57.533 39.130 0.00 0.00 0.00 2.82
212 213 5.365314 TGTTCTTTCCCCAAAAACTAGCATT 59.635 36.000 0.00 0.00 0.00 3.56
213 214 4.898861 TGTTCTTTCCCCAAAAACTAGCAT 59.101 37.500 0.00 0.00 0.00 3.79
214 215 4.098807 GTGTTCTTTCCCCAAAAACTAGCA 59.901 41.667 0.00 0.00 0.00 3.49
215 216 4.341235 AGTGTTCTTTCCCCAAAAACTAGC 59.659 41.667 0.00 0.00 0.00 3.42
216 217 6.465439 AAGTGTTCTTTCCCCAAAAACTAG 57.535 37.500 0.00 0.00 0.00 2.57
217 218 6.860790 AAAGTGTTCTTTCCCCAAAAACTA 57.139 33.333 0.00 0.00 39.36 2.24
218 219 5.755409 AAAGTGTTCTTTCCCCAAAAACT 57.245 34.783 0.00 0.00 39.36 2.66
219 220 5.935206 TCAAAAGTGTTCTTTCCCCAAAAAC 59.065 36.000 0.00 0.00 42.26 2.43
220 221 6.115448 TCAAAAGTGTTCTTTCCCCAAAAA 57.885 33.333 0.00 0.00 42.26 1.94
221 222 5.746990 TCAAAAGTGTTCTTTCCCCAAAA 57.253 34.783 0.00 0.00 42.26 2.44
222 223 5.948742 ATCAAAAGTGTTCTTTCCCCAAA 57.051 34.783 0.00 0.00 42.26 3.28
223 224 5.423610 TCAATCAAAAGTGTTCTTTCCCCAA 59.576 36.000 0.00 0.00 42.26 4.12
224 225 4.959210 TCAATCAAAAGTGTTCTTTCCCCA 59.041 37.500 0.00 0.00 42.26 4.96
225 226 5.069119 AGTCAATCAAAAGTGTTCTTTCCCC 59.931 40.000 0.00 0.00 42.26 4.81
226 227 6.149129 AGTCAATCAAAAGTGTTCTTTCCC 57.851 37.500 0.00 0.00 42.26 3.97
227 228 6.795399 TGAGTCAATCAAAAGTGTTCTTTCC 58.205 36.000 0.00 0.00 42.26 3.13
228 229 9.950680 TTATGAGTCAATCAAAAGTGTTCTTTC 57.049 29.630 0.00 0.00 42.26 2.62
229 230 9.956720 CTTATGAGTCAATCAAAAGTGTTCTTT 57.043 29.630 0.00 0.00 44.59 2.52
230 231 9.342308 TCTTATGAGTCAATCAAAAGTGTTCTT 57.658 29.630 0.00 0.00 42.53 2.52
231 232 8.908786 TCTTATGAGTCAATCAAAAGTGTTCT 57.091 30.769 0.00 0.00 42.53 3.01
232 233 9.950680 TTTCTTATGAGTCAATCAAAAGTGTTC 57.049 29.630 0.00 0.00 42.53 3.18
257 258 6.366315 TGTGCTCGTAGTGTTTGTATTTTT 57.634 33.333 0.00 0.00 0.00 1.94
258 259 5.994887 TGTGCTCGTAGTGTTTGTATTTT 57.005 34.783 0.00 0.00 0.00 1.82
259 260 6.647481 TGTATGTGCTCGTAGTGTTTGTATTT 59.353 34.615 0.00 0.00 0.00 1.40
260 261 6.090358 GTGTATGTGCTCGTAGTGTTTGTATT 59.910 38.462 0.00 0.00 0.00 1.89
261 262 5.575606 GTGTATGTGCTCGTAGTGTTTGTAT 59.424 40.000 0.00 0.00 0.00 2.29
262 263 4.919168 GTGTATGTGCTCGTAGTGTTTGTA 59.081 41.667 0.00 0.00 0.00 2.41
263 264 3.739300 GTGTATGTGCTCGTAGTGTTTGT 59.261 43.478 0.00 0.00 0.00 2.83
264 265 3.738791 TGTGTATGTGCTCGTAGTGTTTG 59.261 43.478 0.00 0.00 0.00 2.93
265 266 3.985008 TGTGTATGTGCTCGTAGTGTTT 58.015 40.909 0.00 0.00 0.00 2.83
266 267 3.653539 TGTGTATGTGCTCGTAGTGTT 57.346 42.857 0.00 0.00 0.00 3.32
267 268 3.005472 AGTTGTGTATGTGCTCGTAGTGT 59.995 43.478 0.00 0.00 0.00 3.55
268 269 3.575630 AGTTGTGTATGTGCTCGTAGTG 58.424 45.455 0.00 0.00 0.00 2.74
269 270 3.936372 AGTTGTGTATGTGCTCGTAGT 57.064 42.857 0.00 0.00 0.00 2.73
270 271 4.324669 CAGAAGTTGTGTATGTGCTCGTAG 59.675 45.833 0.00 0.00 0.00 3.51
271 272 4.234574 CAGAAGTTGTGTATGTGCTCGTA 58.765 43.478 0.00 0.00 0.00 3.43
272 273 3.059884 CAGAAGTTGTGTATGTGCTCGT 58.940 45.455 0.00 0.00 0.00 4.18
273 274 2.159787 GCAGAAGTTGTGTATGTGCTCG 60.160 50.000 1.56 0.00 0.00 5.03
274 275 2.807967 TGCAGAAGTTGTGTATGTGCTC 59.192 45.455 1.56 0.00 0.00 4.26
275 276 2.849942 TGCAGAAGTTGTGTATGTGCT 58.150 42.857 1.56 0.00 0.00 4.40
276 277 3.189080 TCATGCAGAAGTTGTGTATGTGC 59.811 43.478 23.87 2.23 38.66 4.57
277 278 4.378770 GGTCATGCAGAAGTTGTGTATGTG 60.379 45.833 23.87 7.86 38.66 3.21
278 279 3.753272 GGTCATGCAGAAGTTGTGTATGT 59.247 43.478 23.87 0.00 38.66 2.29
279 280 3.752747 TGGTCATGCAGAAGTTGTGTATG 59.247 43.478 20.55 20.55 38.84 2.39
280 281 4.005650 CTGGTCATGCAGAAGTTGTGTAT 58.994 43.478 1.56 0.00 0.00 2.29
281 282 3.402110 CTGGTCATGCAGAAGTTGTGTA 58.598 45.455 1.56 0.00 0.00 2.90
282 283 2.224606 CTGGTCATGCAGAAGTTGTGT 58.775 47.619 1.56 0.00 0.00 3.72
283 284 1.538512 CCTGGTCATGCAGAAGTTGTG 59.461 52.381 2.22 0.00 0.00 3.33
284 285 1.421268 TCCTGGTCATGCAGAAGTTGT 59.579 47.619 2.22 0.00 0.00 3.32
285 286 2.189594 TCCTGGTCATGCAGAAGTTG 57.810 50.000 2.22 0.00 0.00 3.16
286 287 2.787994 CTTCCTGGTCATGCAGAAGTT 58.212 47.619 2.22 0.00 0.00 2.66
287 288 1.612726 GCTTCCTGGTCATGCAGAAGT 60.613 52.381 10.27 0.00 0.00 3.01
288 289 1.093159 GCTTCCTGGTCATGCAGAAG 58.907 55.000 5.49 5.49 0.00 2.85
289 290 0.674581 CGCTTCCTGGTCATGCAGAA 60.675 55.000 2.22 0.00 0.00 3.02
290 291 1.078918 CGCTTCCTGGTCATGCAGA 60.079 57.895 2.22 0.00 0.00 4.26
291 292 2.758089 GCGCTTCCTGGTCATGCAG 61.758 63.158 0.00 0.00 0.00 4.41
292 293 2.747460 GCGCTTCCTGGTCATGCA 60.747 61.111 0.00 0.00 0.00 3.96
293 294 2.747460 TGCGCTTCCTGGTCATGC 60.747 61.111 9.73 0.00 0.00 4.06
294 295 1.642037 CTGTGCGCTTCCTGGTCATG 61.642 60.000 9.73 0.00 0.00 3.07
295 296 1.376424 CTGTGCGCTTCCTGGTCAT 60.376 57.895 9.73 0.00 0.00 3.06
296 297 2.031012 CTGTGCGCTTCCTGGTCA 59.969 61.111 9.73 0.00 0.00 4.02
297 298 2.029844 GTCTGTGCGCTTCCTGGTC 61.030 63.158 9.73 0.00 0.00 4.02
298 299 2.031163 GTCTGTGCGCTTCCTGGT 59.969 61.111 9.73 0.00 0.00 4.00
299 300 1.597854 TTGTCTGTGCGCTTCCTGG 60.598 57.895 9.73 0.00 0.00 4.45
300 301 1.159713 TGTTGTCTGTGCGCTTCCTG 61.160 55.000 9.73 0.77 0.00 3.86
301 302 1.146041 TGTTGTCTGTGCGCTTCCT 59.854 52.632 9.73 0.00 0.00 3.36
302 303 1.279840 GTGTTGTCTGTGCGCTTCC 59.720 57.895 9.73 0.00 0.00 3.46
303 304 1.279840 GGTGTTGTCTGTGCGCTTC 59.720 57.895 9.73 2.14 0.00 3.86
304 305 2.534019 CGGTGTTGTCTGTGCGCTT 61.534 57.895 9.73 0.00 0.00 4.68
305 306 2.967076 CGGTGTTGTCTGTGCGCT 60.967 61.111 9.73 0.00 0.00 5.92
306 307 2.964925 TCGGTGTTGTCTGTGCGC 60.965 61.111 0.00 0.00 0.00 6.09
307 308 1.880796 TGTCGGTGTTGTCTGTGCG 60.881 57.895 0.00 0.00 0.00 5.34
308 309 1.087202 TGTGTCGGTGTTGTCTGTGC 61.087 55.000 0.00 0.00 0.00 4.57
309 310 1.581934 ATGTGTCGGTGTTGTCTGTG 58.418 50.000 0.00 0.00 0.00 3.66
310 311 2.288825 CCTATGTGTCGGTGTTGTCTGT 60.289 50.000 0.00 0.00 0.00 3.41
311 312 2.337583 CCTATGTGTCGGTGTTGTCTG 58.662 52.381 0.00 0.00 0.00 3.51
312 313 1.337823 GCCTATGTGTCGGTGTTGTCT 60.338 52.381 0.00 0.00 0.00 3.41
313 314 1.076332 GCCTATGTGTCGGTGTTGTC 58.924 55.000 0.00 0.00 0.00 3.18
314 315 0.394938 TGCCTATGTGTCGGTGTTGT 59.605 50.000 0.00 0.00 0.00 3.32
315 316 1.464608 CTTGCCTATGTGTCGGTGTTG 59.535 52.381 0.00 0.00 0.00 3.33
316 317 1.346395 TCTTGCCTATGTGTCGGTGTT 59.654 47.619 0.00 0.00 0.00 3.32
317 318 0.973632 TCTTGCCTATGTGTCGGTGT 59.026 50.000 0.00 0.00 0.00 4.16
318 319 2.315925 ATCTTGCCTATGTGTCGGTG 57.684 50.000 0.00 0.00 0.00 4.94
319 320 4.481368 TTTATCTTGCCTATGTGTCGGT 57.519 40.909 0.00 0.00 0.00 4.69
320 321 5.811399 TTTTTATCTTGCCTATGTGTCGG 57.189 39.130 0.00 0.00 0.00 4.79
340 341 4.014406 AGAAGTTTGGAGGTCGTGTTTTT 58.986 39.130 0.00 0.00 0.00 1.94
341 342 3.617284 AGAAGTTTGGAGGTCGTGTTTT 58.383 40.909 0.00 0.00 0.00 2.43
342 343 3.277142 AGAAGTTTGGAGGTCGTGTTT 57.723 42.857 0.00 0.00 0.00 2.83
343 344 2.943033 CAAGAAGTTTGGAGGTCGTGTT 59.057 45.455 0.00 0.00 0.00 3.32
344 345 2.561569 CAAGAAGTTTGGAGGTCGTGT 58.438 47.619 0.00 0.00 0.00 4.49
345 346 1.264288 GCAAGAAGTTTGGAGGTCGTG 59.736 52.381 0.00 0.00 0.00 4.35
346 347 1.141053 AGCAAGAAGTTTGGAGGTCGT 59.859 47.619 0.00 0.00 0.00 4.34
347 348 1.532868 CAGCAAGAAGTTTGGAGGTCG 59.467 52.381 0.00 0.00 0.00 4.79
348 349 2.851195 TCAGCAAGAAGTTTGGAGGTC 58.149 47.619 0.00 0.00 0.00 3.85
349 350 3.297134 TTCAGCAAGAAGTTTGGAGGT 57.703 42.857 0.00 0.00 0.00 3.85
350 351 3.548818 CGTTTCAGCAAGAAGTTTGGAGG 60.549 47.826 0.00 0.00 37.57 4.30
351 352 3.312421 TCGTTTCAGCAAGAAGTTTGGAG 59.688 43.478 0.00 0.00 37.57 3.86
352 353 3.275143 TCGTTTCAGCAAGAAGTTTGGA 58.725 40.909 0.00 0.00 37.57 3.53
353 354 3.691049 TCGTTTCAGCAAGAAGTTTGG 57.309 42.857 0.00 0.00 37.57 3.28
354 355 4.662145 AGTTCGTTTCAGCAAGAAGTTTG 58.338 39.130 0.00 0.00 37.57 2.93
355 356 4.965119 AGTTCGTTTCAGCAAGAAGTTT 57.035 36.364 0.00 0.00 37.57 2.66
356 357 6.431198 TTTAGTTCGTTTCAGCAAGAAGTT 57.569 33.333 0.00 0.00 37.57 2.66
357 358 5.504173 GCTTTAGTTCGTTTCAGCAAGAAGT 60.504 40.000 0.00 0.00 37.57 3.01
358 359 4.906437 GCTTTAGTTCGTTTCAGCAAGAAG 59.094 41.667 0.00 0.00 37.57 2.85
359 360 4.574828 AGCTTTAGTTCGTTTCAGCAAGAA 59.425 37.500 0.00 0.00 0.00 2.52
360 361 4.024893 CAGCTTTAGTTCGTTTCAGCAAGA 60.025 41.667 0.00 0.00 0.00 3.02
361 362 4.214437 CAGCTTTAGTTCGTTTCAGCAAG 58.786 43.478 0.00 0.00 0.00 4.01
362 363 3.003275 CCAGCTTTAGTTCGTTTCAGCAA 59.997 43.478 0.00 0.00 0.00 3.91
363 364 2.548057 CCAGCTTTAGTTCGTTTCAGCA 59.452 45.455 0.00 0.00 0.00 4.41
364 365 2.665794 GCCAGCTTTAGTTCGTTTCAGC 60.666 50.000 0.00 0.00 0.00 4.26
365 366 2.548057 TGCCAGCTTTAGTTCGTTTCAG 59.452 45.455 0.00 0.00 0.00 3.02
366 367 2.548057 CTGCCAGCTTTAGTTCGTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
367 368 2.548480 ACTGCCAGCTTTAGTTCGTTTC 59.452 45.455 0.00 0.00 0.00 2.78
368 369 2.572290 ACTGCCAGCTTTAGTTCGTTT 58.428 42.857 0.00 0.00 0.00 3.60
369 370 2.256117 ACTGCCAGCTTTAGTTCGTT 57.744 45.000 0.00 0.00 0.00 3.85
370 371 2.299297 ACTACTGCCAGCTTTAGTTCGT 59.701 45.455 0.00 0.00 0.00 3.85
371 372 2.960819 ACTACTGCCAGCTTTAGTTCG 58.039 47.619 0.00 0.00 0.00 3.95
372 373 4.182339 GGTACTACTGCCAGCTTTAGTTC 58.818 47.826 8.43 4.90 0.00 3.01
373 374 3.055312 GGGTACTACTGCCAGCTTTAGTT 60.055 47.826 8.43 0.00 0.00 2.24
374 375 2.500504 GGGTACTACTGCCAGCTTTAGT 59.499 50.000 0.00 0.00 0.00 2.24
375 376 2.766828 AGGGTACTACTGCCAGCTTTAG 59.233 50.000 0.00 0.00 0.00 1.85
376 377 2.764572 GAGGGTACTACTGCCAGCTTTA 59.235 50.000 0.00 0.00 0.00 1.85
377 378 1.555533 GAGGGTACTACTGCCAGCTTT 59.444 52.381 0.00 0.00 0.00 3.51
378 379 1.196012 GAGGGTACTACTGCCAGCTT 58.804 55.000 0.00 0.00 0.00 3.74
379 380 0.041238 TGAGGGTACTACTGCCAGCT 59.959 55.000 0.00 0.00 0.00 4.24
380 381 0.461961 CTGAGGGTACTACTGCCAGC 59.538 60.000 0.00 0.00 0.00 4.85
381 382 0.461961 GCTGAGGGTACTACTGCCAG 59.538 60.000 0.00 0.00 0.00 4.85
382 383 0.252057 TGCTGAGGGTACTACTGCCA 60.252 55.000 0.00 0.00 0.00 4.92
383 384 1.069358 GATGCTGAGGGTACTACTGCC 59.931 57.143 0.00 0.00 0.00 4.85
384 385 1.757118 TGATGCTGAGGGTACTACTGC 59.243 52.381 0.00 1.67 0.00 4.40
385 386 2.223923 GCTGATGCTGAGGGTACTACTG 60.224 54.545 0.00 0.00 36.03 2.74
386 387 2.035632 GCTGATGCTGAGGGTACTACT 58.964 52.381 0.00 0.00 36.03 2.57
387 388 1.069358 GGCTGATGCTGAGGGTACTAC 59.931 57.143 0.00 0.00 39.59 2.73
388 389 1.414158 GGCTGATGCTGAGGGTACTA 58.586 55.000 0.00 0.00 39.59 1.82
389 390 2.216148 GGCTGATGCTGAGGGTACT 58.784 57.895 0.00 0.00 39.59 2.73
390 391 4.865865 GGCTGATGCTGAGGGTAC 57.134 61.111 0.00 0.00 39.59 3.34
397 398 3.190849 CACCGTCGGCTGATGCTG 61.191 66.667 12.28 2.28 46.48 4.41
398 399 3.362399 CTCACCGTCGGCTGATGCT 62.362 63.158 12.28 0.00 39.59 3.79
399 400 2.835701 TTCTCACCGTCGGCTGATGC 62.836 60.000 12.28 0.00 38.76 3.91
400 401 0.389817 TTTCTCACCGTCGGCTGATG 60.390 55.000 12.28 7.86 0.00 3.07
401 402 0.320374 TTTTCTCACCGTCGGCTGAT 59.680 50.000 12.28 0.00 0.00 2.90
402 403 0.105224 TTTTTCTCACCGTCGGCTGA 59.895 50.000 12.28 13.08 0.00 4.26
403 404 0.512952 CTTTTTCTCACCGTCGGCTG 59.487 55.000 12.28 9.27 0.00 4.85
404 405 0.391597 TCTTTTTCTCACCGTCGGCT 59.608 50.000 12.28 0.00 0.00 5.52
405 406 1.128692 CATCTTTTTCTCACCGTCGGC 59.871 52.381 12.28 0.00 0.00 5.54
406 407 1.128692 GCATCTTTTTCTCACCGTCGG 59.871 52.381 10.48 10.48 0.00 4.79
407 408 2.069273 AGCATCTTTTTCTCACCGTCG 58.931 47.619 0.00 0.00 0.00 5.12
408 409 3.498397 TGAAGCATCTTTTTCTCACCGTC 59.502 43.478 0.00 0.00 0.00 4.79
409 410 3.476552 TGAAGCATCTTTTTCTCACCGT 58.523 40.909 0.00 0.00 0.00 4.83
410 411 4.222114 GTTGAAGCATCTTTTTCTCACCG 58.778 43.478 0.00 0.00 0.00 4.94
411 412 5.186996 TGTTGAAGCATCTTTTTCTCACC 57.813 39.130 0.00 0.00 0.00 4.02
412 413 6.698766 ACATTGTTGAAGCATCTTTTTCTCAC 59.301 34.615 0.00 0.00 0.00 3.51
413 414 6.808829 ACATTGTTGAAGCATCTTTTTCTCA 58.191 32.000 0.00 0.00 0.00 3.27
414 415 7.223387 ACAACATTGTTGAAGCATCTTTTTCTC 59.777 33.333 30.84 0.00 38.47 2.87
415 416 7.043565 ACAACATTGTTGAAGCATCTTTTTCT 58.956 30.769 30.84 5.31 38.47 2.52
416 417 7.237920 ACAACATTGTTGAAGCATCTTTTTC 57.762 32.000 30.84 0.00 38.47 2.29
417 418 7.981225 ACTACAACATTGTTGAAGCATCTTTTT 59.019 29.630 30.84 10.42 42.35 1.94
418 419 7.491682 ACTACAACATTGTTGAAGCATCTTTT 58.508 30.769 30.84 10.87 42.35 2.27
419 420 7.042797 ACTACAACATTGTTGAAGCATCTTT 57.957 32.000 30.84 11.50 42.35 2.52
420 421 6.639632 ACTACAACATTGTTGAAGCATCTT 57.360 33.333 30.84 12.13 42.35 2.40
421 422 6.262944 TGAACTACAACATTGTTGAAGCATCT 59.737 34.615 30.84 12.77 42.35 2.90
422 423 6.437928 TGAACTACAACATTGTTGAAGCATC 58.562 36.000 30.84 21.07 42.35 3.91
423 424 6.389830 TGAACTACAACATTGTTGAAGCAT 57.610 33.333 30.84 14.04 42.35 3.79
424 425 5.826601 TGAACTACAACATTGTTGAAGCA 57.173 34.783 30.84 18.65 42.35 3.91
425 426 5.630680 CCATGAACTACAACATTGTTGAAGC 59.369 40.000 30.84 16.80 42.35 3.86
426 427 6.151691 CCCATGAACTACAACATTGTTGAAG 58.848 40.000 30.84 9.75 42.35 3.02
427 428 5.596361 ACCCATGAACTACAACATTGTTGAA 59.404 36.000 30.84 12.35 42.35 2.69
428 429 5.136828 ACCCATGAACTACAACATTGTTGA 58.863 37.500 30.84 15.99 42.35 3.18
429 430 5.452078 ACCCATGAACTACAACATTGTTG 57.548 39.130 24.40 24.40 42.35 3.33
430 431 6.097554 TGAAACCCATGAACTACAACATTGTT 59.902 34.615 1.98 0.00 42.35 2.83
431 432 5.596361 TGAAACCCATGAACTACAACATTGT 59.404 36.000 2.32 2.32 44.86 2.71
432 433 6.083098 TGAAACCCATGAACTACAACATTG 57.917 37.500 0.00 0.00 0.00 2.82
433 434 6.916360 ATGAAACCCATGAACTACAACATT 57.084 33.333 0.00 0.00 33.39 2.71
434 435 7.402054 TCTATGAAACCCATGAACTACAACAT 58.598 34.615 0.00 0.00 36.71 2.71
435 436 6.774673 TCTATGAAACCCATGAACTACAACA 58.225 36.000 0.00 0.00 36.71 3.33
436 437 6.879458 ACTCTATGAAACCCATGAACTACAAC 59.121 38.462 0.00 0.00 36.71 3.32
437 438 7.016153 ACTCTATGAAACCCATGAACTACAA 57.984 36.000 0.00 0.00 36.71 2.41
438 439 6.620877 ACTCTATGAAACCCATGAACTACA 57.379 37.500 0.00 0.00 36.71 2.74
439 440 8.008513 TCTACTCTATGAAACCCATGAACTAC 57.991 38.462 0.00 0.00 36.71 2.73
443 444 7.103641 GTGTTCTACTCTATGAAACCCATGAA 58.896 38.462 0.00 0.00 36.71 2.57
456 457 3.959293 TGTCCGGATGTGTTCTACTCTA 58.041 45.455 7.81 0.00 0.00 2.43
458 459 3.587797 TTGTCCGGATGTGTTCTACTC 57.412 47.619 7.81 0.00 0.00 2.59
459 460 3.323979 AGTTTGTCCGGATGTGTTCTACT 59.676 43.478 7.81 0.29 0.00 2.57
460 461 3.660865 AGTTTGTCCGGATGTGTTCTAC 58.339 45.455 7.81 0.00 0.00 2.59
466 469 3.868757 TCTAGAGTTTGTCCGGATGTG 57.131 47.619 7.81 0.00 0.00 3.21
469 472 4.192317 GCATTTCTAGAGTTTGTCCGGAT 58.808 43.478 7.81 0.00 0.00 4.18
471 474 2.678336 GGCATTTCTAGAGTTTGTCCGG 59.322 50.000 0.00 0.00 0.00 5.14
520 523 4.214971 GCTGGTTGTATCTAGCAATGATGG 59.785 45.833 0.00 0.00 40.72 3.51
530 533 5.238868 GTCTGATCTACGCTGGTTGTATCTA 59.761 44.000 0.00 0.00 0.00 1.98
585 588 4.787083 GTCACGTCACTGTTATAGTTCTCG 59.213 45.833 0.00 0.00 37.60 4.04
645 649 7.120579 TGTTGTTTGAACACTACAGACTTGAAT 59.879 33.333 0.00 0.00 38.92 2.57
647 651 5.935206 TGTTGTTTGAACACTACAGACTTGA 59.065 36.000 0.00 0.00 38.92 3.02
654 658 6.971602 TGAGTTTTGTTGTTTGAACACTACA 58.028 32.000 0.00 0.00 38.92 2.74
758 786 3.660111 GCCTGCAAACCGCGTCTT 61.660 61.111 4.92 0.00 46.97 3.01
992 1020 1.075748 AAGGGATCCATGGCTTGGC 60.076 57.895 15.23 1.82 46.01 4.52
1041 1069 1.684734 GGAGAGGAGCGGGTGGTAA 60.685 63.158 0.00 0.00 0.00 2.85
1484 1896 3.077907 CGGCTTCCTTCCCCTTGA 58.922 61.111 0.00 0.00 0.00 3.02
1680 2092 1.810532 GACCTCGCCAATCTCGACT 59.189 57.895 0.00 0.00 32.08 4.18
1893 2305 3.191836 CGCTCCTCTCGCTCTTCA 58.808 61.111 0.00 0.00 0.00 3.02
1967 2379 0.954452 GGCGATTGGTGGAATGGATC 59.046 55.000 0.00 0.00 0.00 3.36
1974 2386 1.570857 ATGGAAGGGCGATTGGTGGA 61.571 55.000 0.00 0.00 0.00 4.02
1984 2396 1.789078 CGTGCATAGCATGGAAGGGC 61.789 60.000 3.35 0.00 41.91 5.19
1985 2397 1.789078 GCGTGCATAGCATGGAAGGG 61.789 60.000 12.56 0.00 44.72 3.95
1986 2398 1.096967 TGCGTGCATAGCATGGAAGG 61.097 55.000 14.56 0.00 42.49 3.46
1987 2399 0.028505 GTGCGTGCATAGCATGGAAG 59.971 55.000 20.06 0.00 46.44 3.46
1988 2400 1.375853 GGTGCGTGCATAGCATGGAA 61.376 55.000 20.06 0.00 46.44 3.53
1989 2401 1.819208 GGTGCGTGCATAGCATGGA 60.819 57.895 20.06 7.29 46.96 3.41
1990 2402 1.449726 ATGGTGCGTGCATAGCATGG 61.450 55.000 20.06 1.62 46.96 3.66
1991 2403 0.317519 CATGGTGCGTGCATAGCATG 60.318 55.000 20.06 19.60 46.96 4.06
1992 2404 2.027325 CATGGTGCGTGCATAGCAT 58.973 52.632 20.06 13.44 46.96 3.79
1993 2405 2.763273 GCATGGTGCGTGCATAGCA 61.763 57.895 14.56 14.56 44.78 3.49
1994 2406 2.025156 GCATGGTGCGTGCATAGC 59.975 61.111 9.79 9.79 44.78 2.97
1995 2407 2.717485 GGCATGGTGCGTGCATAG 59.283 61.111 0.00 0.00 46.93 2.23
1996 2408 2.828095 GGGCATGGTGCGTGCATA 60.828 61.111 0.00 0.00 46.93 3.14
1997 2409 4.746309 AGGGCATGGTGCGTGCAT 62.746 61.111 0.00 0.00 46.93 3.96
2053 2469 2.315176 AGTGATGAGGAGGAGGAATCG 58.685 52.381 0.00 0.00 0.00 3.34
2059 2475 2.079170 TGCCTAGTGATGAGGAGGAG 57.921 55.000 0.00 0.00 35.99 3.69
2060 2476 2.550277 TTGCCTAGTGATGAGGAGGA 57.450 50.000 0.00 0.00 35.99 3.71
2097 2520 8.455682 TCCACGAAAATGAGGAAAATATTACAC 58.544 33.333 0.00 0.00 0.00 2.90
2099 2522 8.889717 TCTCCACGAAAATGAGGAAAATATTAC 58.110 33.333 0.00 0.00 0.00 1.89
2100 2523 9.627123 ATCTCCACGAAAATGAGGAAAATATTA 57.373 29.630 0.00 0.00 0.00 0.98
2101 2524 7.938140 TCTCCACGAAAATGAGGAAAATATT 57.062 32.000 0.00 0.00 0.00 1.28
2102 2525 9.277783 CTATCTCCACGAAAATGAGGAAAATAT 57.722 33.333 0.00 0.00 0.00 1.28
2103 2526 8.482943 TCTATCTCCACGAAAATGAGGAAAATA 58.517 33.333 0.00 0.00 0.00 1.40
2104 2527 7.338710 TCTATCTCCACGAAAATGAGGAAAAT 58.661 34.615 0.00 0.00 0.00 1.82
2105 2528 6.707290 TCTATCTCCACGAAAATGAGGAAAA 58.293 36.000 0.00 0.00 0.00 2.29
2119 2542 7.387397 CCTGAGCAATTAAGAATCTATCTCCAC 59.613 40.741 0.00 0.00 37.42 4.02
2121 2544 7.602265 GTCCTGAGCAATTAAGAATCTATCTCC 59.398 40.741 0.00 0.00 37.42 3.71
2125 2548 7.055667 TCGTCCTGAGCAATTAAGAATCTAT 57.944 36.000 0.00 0.00 0.00 1.98
2127 2550 5.344743 TCGTCCTGAGCAATTAAGAATCT 57.655 39.130 0.00 0.00 0.00 2.40
2353 2798 2.368875 TCATGGGCTAGGCTAAGCTAAC 59.631 50.000 16.80 0.00 42.37 2.34
2354 2799 2.368875 GTCATGGGCTAGGCTAAGCTAA 59.631 50.000 16.80 5.34 42.37 3.09
2356 2801 0.761802 GTCATGGGCTAGGCTAAGCT 59.238 55.000 16.80 0.00 42.37 3.74
2357 2802 0.250510 GGTCATGGGCTAGGCTAAGC 60.251 60.000 16.80 1.90 41.99 3.09
2358 2803 1.071385 CAGGTCATGGGCTAGGCTAAG 59.929 57.143 16.80 7.45 0.00 2.18
2359 2804 1.131638 CAGGTCATGGGCTAGGCTAA 58.868 55.000 16.80 5.46 0.00 3.09
2360 2805 1.410850 GCAGGTCATGGGCTAGGCTA 61.411 60.000 16.80 11.05 0.00 3.93
2361 2806 2.750657 GCAGGTCATGGGCTAGGCT 61.751 63.158 16.80 0.00 0.00 4.58
2362 2807 2.203266 GCAGGTCATGGGCTAGGC 60.203 66.667 8.00 8.00 0.00 3.93
2363 2808 0.749454 GTTGCAGGTCATGGGCTAGG 60.749 60.000 0.00 0.00 0.00 3.02
2364 2809 0.254178 AGTTGCAGGTCATGGGCTAG 59.746 55.000 0.00 0.00 0.00 3.42
2365 2810 0.035152 CAGTTGCAGGTCATGGGCTA 60.035 55.000 0.00 0.00 0.00 3.93
2366 2811 1.303888 CAGTTGCAGGTCATGGGCT 60.304 57.895 0.00 0.00 0.00 5.19
2367 2812 0.322456 TACAGTTGCAGGTCATGGGC 60.322 55.000 0.00 0.00 0.00 5.36
2368 2813 2.198827 TTACAGTTGCAGGTCATGGG 57.801 50.000 0.00 0.00 0.00 4.00
2456 2908 6.351541 GGATGGGTTAATTATCATGCATGCAT 60.352 38.462 27.46 27.46 37.08 3.96
2457 2909 5.047164 GGATGGGTTAATTATCATGCATGCA 60.047 40.000 25.04 25.04 0.00 3.96
2458 2910 5.047164 TGGATGGGTTAATTATCATGCATGC 60.047 40.000 22.25 11.82 34.05 4.06
2459 2911 6.593268 TGGATGGGTTAATTATCATGCATG 57.407 37.500 21.07 21.07 34.05 4.06
2461 2913 5.415389 CGATGGATGGGTTAATTATCATGCA 59.585 40.000 15.13 15.13 40.96 3.96
2462 2914 5.647658 TCGATGGATGGGTTAATTATCATGC 59.352 40.000 0.00 7.84 0.00 4.06
2463 2915 7.700505 CATCGATGGATGGGTTAATTATCATG 58.299 38.462 17.96 0.00 45.15 3.07
2464 2916 7.870509 CATCGATGGATGGGTTAATTATCAT 57.129 36.000 17.96 0.00 45.15 2.45
2495 2951 4.941713 AGAAGGAGGAGAAGAAGAAGCTA 58.058 43.478 0.00 0.00 0.00 3.32
2496 2952 3.769300 GAGAAGGAGGAGAAGAAGAAGCT 59.231 47.826 0.00 0.00 0.00 3.74
2497 2953 3.118775 GGAGAAGGAGGAGAAGAAGAAGC 60.119 52.174 0.00 0.00 0.00 3.86
2498 2954 4.352893 AGGAGAAGGAGGAGAAGAAGAAG 58.647 47.826 0.00 0.00 0.00 2.85
2499 2955 4.202727 TGAGGAGAAGGAGGAGAAGAAGAA 60.203 45.833 0.00 0.00 0.00 2.52
2500 2956 3.335183 TGAGGAGAAGGAGGAGAAGAAGA 59.665 47.826 0.00 0.00 0.00 2.87
2501 2957 3.707316 TGAGGAGAAGGAGGAGAAGAAG 58.293 50.000 0.00 0.00 0.00 2.85
2502 2958 3.835478 TGAGGAGAAGGAGGAGAAGAA 57.165 47.619 0.00 0.00 0.00 2.52
2503 2959 3.686978 CGATGAGGAGAAGGAGGAGAAGA 60.687 52.174 0.00 0.00 0.00 2.87
2778 3236 2.109799 AGCTGCACTTGACTGCGT 59.890 55.556 1.02 0.00 40.31 5.24
2840 3298 4.441913 GCAAACATATACAAGCAGGGCATT 60.442 41.667 0.00 0.00 0.00 3.56
2903 3370 1.338105 TGATGCAGTCAGGGTTCTTCG 60.338 52.381 0.00 0.00 31.80 3.79
2930 3397 6.449635 AGCACTATCTAGCTAGTATGCATC 57.550 41.667 27.12 13.57 39.78 3.91
2940 3407 6.392625 TCGTCAAATAAGCACTATCTAGCT 57.607 37.500 0.00 0.00 44.31 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.