Multiple sequence alignment - TraesCS1B01G087900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G087900 chr1B 100.000 6135 0 0 1 6135 83628982 83635116 0.000000e+00 11330.0
1 TraesCS1B01G087900 chr1B 89.349 338 27 7 2199 2531 649994624 649994291 3.420000e-112 416.0
2 TraesCS1B01G087900 chr1B 88.757 338 29 7 2199 2531 486563993 486563660 7.400000e-109 405.0
3 TraesCS1B01G087900 chr1B 87.363 364 33 12 2199 2554 643781104 643780746 7.400000e-109 405.0
4 TraesCS1B01G087900 chr1B 83.537 164 12 7 2629 2790 83631406 83631556 8.290000e-29 139.0
5 TraesCS1B01G087900 chr1B 91.026 78 5 2 8 83 366887872 366887949 3.020000e-18 104.0
6 TraesCS1B01G087900 chr1B 89.024 82 8 1 2631 2712 643780877 643780797 3.910000e-17 100.0
7 TraesCS1B01G087900 chr1B 89.610 77 7 1 2631 2707 649994397 649994322 5.060000e-16 97.1
8 TraesCS1B01G087900 chr1B 87.013 77 9 1 2631 2707 486563766 486563691 1.100000e-12 86.1
9 TraesCS1B01G087900 chr1A 87.468 1971 155 42 4224 6135 52230811 52232748 0.000000e+00 2187.0
10 TraesCS1B01G087900 chr1A 85.020 1482 89 57 534 1945 52228209 52229627 0.000000e+00 1384.0
11 TraesCS1B01G087900 chr1A 84.654 795 70 15 2103 2866 52229767 52230540 0.000000e+00 745.0
12 TraesCS1B01G087900 chr1A 80.388 464 30 27 27 448 52227296 52227740 4.650000e-76 296.0
13 TraesCS1B01G087900 chr1A 82.511 223 20 7 3950 4153 578246179 578246401 1.760000e-40 178.0
14 TraesCS1B01G087900 chr1A 79.630 216 25 3 3945 4141 321148308 321148523 2.980000e-28 137.0
15 TraesCS1B01G087900 chr1D 86.249 1978 145 56 4224 6135 52569967 52571883 0.000000e+00 2028.0
16 TraesCS1B01G087900 chr1D 89.296 1663 81 40 534 2133 52567395 52569023 0.000000e+00 1995.0
17 TraesCS1B01G087900 chr1D 86.625 1286 119 27 2916 4153 363732208 363730928 0.000000e+00 1373.0
18 TraesCS1B01G087900 chr1D 95.485 443 20 0 2133 2575 52569188 52569630 0.000000e+00 708.0
19 TraesCS1B01G087900 chr1D 83.303 545 42 24 27 533 52566796 52567329 2.020000e-124 457.0
20 TraesCS1B01G087900 chr1D 82.164 342 39 12 2576 2915 52569659 52569980 2.180000e-69 274.0
21 TraesCS1B01G087900 chr1D 84.232 241 20 13 2629 2866 52569480 52569705 1.040000e-52 219.0
22 TraesCS1B01G087900 chr5D 87.393 1285 106 22 2918 4153 545122742 545121465 0.000000e+00 1424.0
23 TraesCS1B01G087900 chr5D 92.205 975 75 1 2916 3890 389441914 389442887 0.000000e+00 1378.0
24 TraesCS1B01G087900 chr5D 87.246 1231 116 22 2916 4106 464904247 464905476 0.000000e+00 1365.0
25 TraesCS1B01G087900 chr5D 91.020 980 83 4 2914 3890 205116840 205117817 0.000000e+00 1317.0
26 TraesCS1B01G087900 chr5D 83.799 179 19 6 3936 4107 428471952 428472127 1.770000e-35 161.0
27 TraesCS1B01G087900 chr7D 86.994 1284 120 24 2916 4153 255782424 255781142 0.000000e+00 1402.0
28 TraesCS1B01G087900 chr7D 87.547 1060 103 15 3115 4153 28284352 28283301 0.000000e+00 1199.0
29 TraesCS1B01G087900 chr2D 91.598 976 79 2 2915 3890 83098923 83097951 0.000000e+00 1345.0
30 TraesCS1B01G087900 chr2D 87.057 1213 106 22 2918 4085 319689210 319688004 0.000000e+00 1323.0
31 TraesCS1B01G087900 chr2D 85.481 1288 128 22 2916 4153 367105867 367107145 0.000000e+00 1288.0
32 TraesCS1B01G087900 chr2D 81.778 225 22 9 3948 4153 83097850 83097626 2.940000e-38 171.0
33 TraesCS1B01G087900 chr3D 90.744 994 84 6 2897 3890 587508139 587509124 0.000000e+00 1319.0
34 TraesCS1B01G087900 chr3D 90.171 468 22 6 1223 1669 442750626 442750162 6.850000e-164 588.0
35 TraesCS1B01G087900 chr3D 83.913 230 18 7 3945 4155 587509222 587509451 1.040000e-47 202.0
36 TraesCS1B01G087900 chr6A 84.941 1275 141 26 2923 4153 523942320 523943587 0.000000e+00 1243.0
37 TraesCS1B01G087900 chr6A 81.893 243 22 13 3930 4153 69352037 69351798 1.050000e-42 185.0
38 TraesCS1B01G087900 chr6A 92.045 88 7 0 3945 4032 593660669 593660756 2.320000e-24 124.0
39 TraesCS1B01G087900 chr3B 85.785 1217 119 21 2986 4153 755217414 755216203 0.000000e+00 1240.0
40 TraesCS1B01G087900 chr3B 90.000 330 26 6 2205 2531 174472379 174472704 2.640000e-113 420.0
41 TraesCS1B01G087900 chr3B 88.757 338 29 8 2199 2531 776607513 776607846 7.400000e-109 405.0
42 TraesCS1B01G087900 chr3B 90.000 70 6 1 2631 2700 174472598 174472666 8.470000e-14 89.8
43 TraesCS1B01G087900 chr6D 85.529 1002 105 15 3173 4153 419480929 419481911 0.000000e+00 1011.0
44 TraesCS1B01G087900 chr6D 86.190 210 23 3 3950 4153 108825954 108826163 8.000000e-54 222.0
45 TraesCS1B01G087900 chr6D 82.432 222 23 5 3950 4155 115642240 115642461 4.890000e-41 180.0
46 TraesCS1B01G087900 chr4A 88.462 338 30 8 2199 2531 649063582 649063249 3.450000e-107 399.0
47 TraesCS1B01G087900 chr4A 86.585 82 10 1 2631 2712 649063355 649063275 8.470000e-14 89.8
48 TraesCS1B01G087900 chr4A 85.542 83 11 1 2630 2712 713459230 713459149 1.100000e-12 86.1
49 TraesCS1B01G087900 chr7B 88.166 338 31 8 2199 2531 398994202 398994535 1.600000e-105 394.0
50 TraesCS1B01G087900 chr5A 79.060 234 30 9 3939 4153 219268635 219268868 6.410000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G087900 chr1B 83628982 83635116 6134 False 5734.500000 11330 91.768500 1 6135 2 chr1B.!!$F2 6134
1 TraesCS1B01G087900 chr1A 52227296 52232748 5452 False 1153.000000 2187 84.382500 27 6135 4 chr1A.!!$F3 6108
2 TraesCS1B01G087900 chr1D 363730928 363732208 1280 True 1373.000000 1373 86.625000 2916 4153 1 chr1D.!!$R1 1237
3 TraesCS1B01G087900 chr1D 52566796 52571883 5087 False 946.833333 2028 86.788167 27 6135 6 chr1D.!!$F1 6108
4 TraesCS1B01G087900 chr5D 545121465 545122742 1277 True 1424.000000 1424 87.393000 2918 4153 1 chr5D.!!$R1 1235
5 TraesCS1B01G087900 chr5D 389441914 389442887 973 False 1378.000000 1378 92.205000 2916 3890 1 chr5D.!!$F2 974
6 TraesCS1B01G087900 chr5D 464904247 464905476 1229 False 1365.000000 1365 87.246000 2916 4106 1 chr5D.!!$F4 1190
7 TraesCS1B01G087900 chr5D 205116840 205117817 977 False 1317.000000 1317 91.020000 2914 3890 1 chr5D.!!$F1 976
8 TraesCS1B01G087900 chr7D 255781142 255782424 1282 True 1402.000000 1402 86.994000 2916 4153 1 chr7D.!!$R2 1237
9 TraesCS1B01G087900 chr7D 28283301 28284352 1051 True 1199.000000 1199 87.547000 3115 4153 1 chr7D.!!$R1 1038
10 TraesCS1B01G087900 chr2D 319688004 319689210 1206 True 1323.000000 1323 87.057000 2918 4085 1 chr2D.!!$R1 1167
11 TraesCS1B01G087900 chr2D 367105867 367107145 1278 False 1288.000000 1288 85.481000 2916 4153 1 chr2D.!!$F1 1237
12 TraesCS1B01G087900 chr2D 83097626 83098923 1297 True 758.000000 1345 86.688000 2915 4153 2 chr2D.!!$R2 1238
13 TraesCS1B01G087900 chr3D 587508139 587509451 1312 False 760.500000 1319 87.328500 2897 4155 2 chr3D.!!$F1 1258
14 TraesCS1B01G087900 chr6A 523942320 523943587 1267 False 1243.000000 1243 84.941000 2923 4153 1 chr6A.!!$F1 1230
15 TraesCS1B01G087900 chr3B 755216203 755217414 1211 True 1240.000000 1240 85.785000 2986 4153 1 chr3B.!!$R1 1167
16 TraesCS1B01G087900 chr6D 419480929 419481911 982 False 1011.000000 1011 85.529000 3173 4153 1 chr6D.!!$F3 980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 1137 0.035881 ACACTCATGGCAGACACCTG 59.964 55.0 0.00 0.0 43.22 4.00 F
910 1408 0.178301 GGAACCGACATTCCCCTCTC 59.822 60.0 2.57 0.0 42.16 3.20 F
911 1409 0.178301 GAACCGACATTCCCCTCTCC 59.822 60.0 0.00 0.0 0.00 3.71 F
912 1410 0.252742 AACCGACATTCCCCTCTCCT 60.253 55.0 0.00 0.0 0.00 3.69 F
2382 3128 0.393077 AGTGCACAGTACCTGGTGTC 59.607 55.0 21.04 2.6 35.51 3.67 F
3701 4710 0.037697 TAACGACATGGAACGCTGCT 60.038 50.0 0.00 0.0 0.00 4.24 F
3899 4918 0.105778 GCAGTCCACCTAGATCTGCC 59.894 60.0 5.18 0.0 43.55 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 2367 0.394938 TTTGTACTGGCCTCGCTGAA 59.605 50.0 3.32 0.00 0.00 3.02 R
2774 3777 0.323633 TTCAGATGGGCCACATGGTG 60.324 55.0 9.28 1.85 40.72 4.17 R
2831 3834 0.610232 AGGAAATGGCCTGTCACTGC 60.610 55.0 3.32 0.00 36.76 4.40 R
2859 3863 5.045869 ACTTTTAGCTGGTGCCTTATCAGTA 60.046 40.0 0.00 0.00 39.83 2.74 R
3900 4919 0.108424 GCACGTCATCTGGCTTCTCT 60.108 55.0 0.00 0.00 0.00 3.10 R
4683 5798 0.320946 GCAGTACACGGCAGGGTTAA 60.321 55.0 0.00 0.00 37.03 2.01 R
5357 6509 0.392336 CTGTATGGAGAGGAGCAGCC 59.608 60.0 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.091720 TGACCCCATCAATCCAATCCAG 60.092 50.000 0.00 0.00 33.02 3.86
65 71 0.552367 ATCCAATCCAGTCCCACCCA 60.552 55.000 0.00 0.00 0.00 4.51
72 82 3.083997 AGTCCCACCCATCTCGCC 61.084 66.667 0.00 0.00 0.00 5.54
73 83 3.083997 GTCCCACCCATCTCGCCT 61.084 66.667 0.00 0.00 0.00 5.52
74 84 2.764128 TCCCACCCATCTCGCCTC 60.764 66.667 0.00 0.00 0.00 4.70
75 85 4.227134 CCCACCCATCTCGCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
77 87 3.842923 CACCCATCTCGCCTCGCT 61.843 66.667 0.00 0.00 0.00 4.93
104 114 3.695606 AGGAAGCTGCGCCGAAGA 61.696 61.111 4.18 0.00 0.00 2.87
202 233 0.396435 TCCCACACGACAGAGCAAAT 59.604 50.000 0.00 0.00 0.00 2.32
299 336 1.445238 GCAGCGTGTCTGTCCTCTC 60.445 63.158 0.00 0.00 44.66 3.20
302 340 0.963355 AGCGTGTCTGTCCTCTCCTC 60.963 60.000 0.00 0.00 0.00 3.71
304 342 0.808125 CGTGTCTGTCCTCTCCTCTG 59.192 60.000 0.00 0.00 0.00 3.35
308 346 1.476488 GTCTGTCCTCTCCTCTGCTTC 59.524 57.143 0.00 0.00 0.00 3.86
313 351 0.459489 CCTCTCCTCTGCTTCCTTCG 59.541 60.000 0.00 0.00 0.00 3.79
326 364 4.675029 CTTCGTGCCCGTTCCCGT 62.675 66.667 0.00 0.00 35.01 5.28
360 399 1.156095 CCTGCCCCCAACTTTTCCT 59.844 57.895 0.00 0.00 0.00 3.36
362 401 0.681175 CTGCCCCCAACTTTTCCTTG 59.319 55.000 0.00 0.00 0.00 3.61
363 402 0.762461 TGCCCCCAACTTTTCCTTGG 60.762 55.000 0.00 0.00 38.37 3.61
364 403 2.057830 CCCCCAACTTTTCCTTGGC 58.942 57.895 0.00 0.00 37.45 4.52
365 404 1.480212 CCCCCAACTTTTCCTTGGCC 61.480 60.000 0.00 0.00 37.45 5.36
367 406 1.665442 CCAACTTTTCCTTGGCCGG 59.335 57.895 0.00 0.00 32.03 6.13
368 407 0.825840 CCAACTTTTCCTTGGCCGGA 60.826 55.000 5.05 0.00 32.03 5.14
370 409 0.106419 AACTTTTCCTTGGCCGGACA 60.106 50.000 5.41 5.41 31.44 4.02
371 410 0.112412 ACTTTTCCTTGGCCGGACAT 59.888 50.000 13.08 0.00 31.44 3.06
387 427 3.246226 CGGACATACTAGTACGTACGCTT 59.754 47.826 19.61 10.13 40.88 4.68
418 465 2.872858 GCCTCCTAATTAACCTCGCTTG 59.127 50.000 0.00 0.00 0.00 4.01
429 480 2.344025 ACCTCGCTTGTTAATTCGGTC 58.656 47.619 0.00 0.00 0.00 4.79
430 481 1.664151 CCTCGCTTGTTAATTCGGTCC 59.336 52.381 0.00 0.00 0.00 4.46
441 492 2.770164 ATTCGGTCCTGTCCTCTTTG 57.230 50.000 0.00 0.00 0.00 2.77
487 852 2.500392 ATTTGTAGGTTTAGCGCCCA 57.500 45.000 2.29 0.00 0.00 5.36
489 854 1.816074 TTGTAGGTTTAGCGCCCAAG 58.184 50.000 2.29 0.00 0.00 3.61
494 859 0.445043 GGTTTAGCGCCCAAGTTACG 59.555 55.000 2.29 0.00 0.00 3.18
508 874 1.080093 TTACGCAGTCGGGAGCTTG 60.080 57.895 0.00 0.00 43.93 4.01
513 879 1.220206 CAGTCGGGAGCTTGCATCT 59.780 57.895 0.00 0.00 0.00 2.90
522 890 2.396601 GAGCTTGCATCTCTCTCATCG 58.603 52.381 8.70 0.00 0.00 3.84
595 1038 1.028905 CGTGCAACCAAAGAAGGGAA 58.971 50.000 0.00 0.00 0.00 3.97
601 1056 1.534729 ACCAAAGAAGGGAACGCATC 58.465 50.000 0.00 0.00 0.00 3.91
642 1114 3.431207 GGAAACAATACGGCCTACTAGCA 60.431 47.826 0.00 0.00 0.00 3.49
661 1137 0.035881 ACACTCATGGCAGACACCTG 59.964 55.000 0.00 0.00 43.22 4.00
677 1160 0.529337 CCTGGTATGAGACAGCAGCG 60.529 60.000 0.00 0.00 39.61 5.18
809 1303 7.041372 TCAGTAAAATGCAGGAGTAAAACAGTC 60.041 37.037 0.00 0.00 0.00 3.51
824 1318 3.610040 ACAGTCGAGTAATGAATGCCA 57.390 42.857 0.00 0.00 34.97 4.92
863 1361 3.140895 AGCCCATGGTAGCTTCCATTAAT 59.859 43.478 21.27 6.27 44.75 1.40
908 1406 4.957164 GGAACCGACATTCCCCTC 57.043 61.111 2.57 0.00 42.16 4.30
909 1407 2.297937 GGAACCGACATTCCCCTCT 58.702 57.895 2.57 0.00 42.16 3.69
910 1408 0.178301 GGAACCGACATTCCCCTCTC 59.822 60.000 2.57 0.00 42.16 3.20
911 1409 0.178301 GAACCGACATTCCCCTCTCC 59.822 60.000 0.00 0.00 0.00 3.71
912 1410 0.252742 AACCGACATTCCCCTCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
913 1411 0.688087 ACCGACATTCCCCTCTCCTC 60.688 60.000 0.00 0.00 0.00 3.71
914 1412 0.397816 CCGACATTCCCCTCTCCTCT 60.398 60.000 0.00 0.00 0.00 3.69
926 1424 2.018086 CTCCTCTCCCCTCTCCCCT 61.018 68.421 0.00 0.00 0.00 4.79
927 1425 2.015726 TCCTCTCCCCTCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
928 1426 2.018086 CCTCTCCCCTCTCCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
936 1434 1.522900 CCTCTCCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
1106 1613 4.007940 CAACGCCAACACCGTCCG 62.008 66.667 0.00 0.00 38.06 4.79
1830 2367 2.917933 TGCTTACTTCACAGCACAAGT 58.082 42.857 0.00 0.00 41.20 3.16
1832 2369 3.312421 TGCTTACTTCACAGCACAAGTTC 59.688 43.478 0.00 0.00 41.20 3.01
1839 2376 0.882042 ACAGCACAAGTTCAGCGAGG 60.882 55.000 0.00 0.00 0.00 4.63
1840 2377 1.963338 AGCACAAGTTCAGCGAGGC 60.963 57.895 0.00 0.00 0.00 4.70
1849 2386 0.394938 TTCAGCGAGGCCAGTACAAA 59.605 50.000 5.01 0.00 0.00 2.83
1855 2392 4.096382 CAGCGAGGCCAGTACAAATTAAAT 59.904 41.667 5.01 0.00 0.00 1.40
1857 2394 5.034797 GCGAGGCCAGTACAAATTAAATTC 58.965 41.667 5.01 0.00 0.00 2.17
1860 2397 6.530019 AGGCCAGTACAAATTAAATTCAGG 57.470 37.500 5.01 0.00 0.00 3.86
1872 2409 2.610438 AATTCAGGGTGGCATTCACT 57.390 45.000 0.00 0.00 45.38 3.41
1881 2423 2.351738 GGTGGCATTCACTTTCGGAAAG 60.352 50.000 24.92 24.92 45.38 2.62
1885 2427 4.098654 TGGCATTCACTTTCGGAAAGAAAA 59.901 37.500 31.26 23.63 46.98 2.29
1886 2428 5.047188 GGCATTCACTTTCGGAAAGAAAAA 58.953 37.500 31.26 21.67 46.98 1.94
1988 2530 3.476552 ACTGACATTCGCCTTCAGAAAA 58.523 40.909 4.88 0.00 39.36 2.29
1989 2531 3.499918 ACTGACATTCGCCTTCAGAAAAG 59.500 43.478 4.88 0.00 39.36 2.27
1990 2532 3.738982 TGACATTCGCCTTCAGAAAAGA 58.261 40.909 0.00 0.00 0.00 2.52
1991 2533 4.133820 TGACATTCGCCTTCAGAAAAGAA 58.866 39.130 0.00 0.00 0.00 2.52
1992 2534 4.578516 TGACATTCGCCTTCAGAAAAGAAA 59.421 37.500 0.50 0.00 0.00 2.52
1993 2535 5.067153 TGACATTCGCCTTCAGAAAAGAAAA 59.933 36.000 0.50 0.00 0.00 2.29
1994 2536 5.901552 ACATTCGCCTTCAGAAAAGAAAAA 58.098 33.333 0.50 0.00 0.00 1.94
2126 2707 8.579850 AAAATCAGCTGGAATCAAATAGTACA 57.420 30.769 15.13 0.00 0.00 2.90
2153 2899 2.094417 GCACTATGAAAGTTCAGGCGAC 59.906 50.000 0.00 0.00 41.08 5.19
2219 2965 1.110442 TGCAACAAAGGGACCAACAG 58.890 50.000 0.00 0.00 0.00 3.16
2229 2975 1.270550 GGGACCAACAGCAAGTGATTG 59.729 52.381 0.00 0.00 0.00 2.67
2230 2976 1.956477 GGACCAACAGCAAGTGATTGT 59.044 47.619 0.00 0.00 0.00 2.71
2307 3053 5.055812 TCAAATTTTGGGCATCAACAGTTC 58.944 37.500 9.18 0.00 34.67 3.01
2367 3113 3.751175 TGGTTATGTAAGTCAGCAAGTGC 59.249 43.478 0.00 0.00 42.49 4.40
2382 3128 0.393077 AGTGCACAGTACCTGGTGTC 59.607 55.000 21.04 2.60 35.51 3.67
2395 3142 1.956477 CTGGTGTCCAAAAGTCTTGGG 59.044 52.381 0.00 0.00 39.96 4.12
2437 3184 1.242076 CTTGGTCTTCTTGTGCCCTG 58.758 55.000 0.00 0.00 0.00 4.45
2442 3189 2.356535 GGTCTTCTTGTGCCCTGATCAT 60.357 50.000 0.00 0.00 0.00 2.45
2461 3208 3.136443 TCATTTGTCCCTGTCAACTCTGT 59.864 43.478 0.00 0.00 0.00 3.41
2464 3211 4.336889 TTGTCCCTGTCAACTCTGTAAG 57.663 45.455 0.00 0.00 0.00 2.34
2489 3236 1.202855 ACAAGCTCTGGTGCAGATTGT 60.203 47.619 1.15 1.15 39.92 2.71
2500 3247 3.424829 GGTGCAGATTGTAACACATCACG 60.425 47.826 0.00 0.00 34.69 4.35
2575 3324 1.875514 CAAGTATCATGTGCCCCATCG 59.124 52.381 0.00 0.00 0.00 3.84
2591 3368 2.595386 CATCGGCCAAAGTTTAACAGC 58.405 47.619 2.24 0.00 0.00 4.40
2604 3381 1.904287 TAACAGCGACAGGCCATTTT 58.096 45.000 5.01 0.00 45.17 1.82
2646 3423 1.144936 CTTCCTCGTGCCCTGATCC 59.855 63.158 0.00 0.00 0.00 3.36
2676 3453 3.867857 TGTCAACTCTGTAAACTGCACA 58.132 40.909 0.00 0.00 0.00 4.57
2701 3478 3.138304 TCTGGTGCAGATTGTAACACAC 58.862 45.455 0.00 0.00 35.39 3.82
2707 3484 2.878406 GCAGATTGTAACACACCACTGT 59.122 45.455 0.00 0.00 30.83 3.55
2735 3736 3.057969 TGGGACAGTTAGATGCACTTG 57.942 47.619 0.00 0.00 0.00 3.16
2736 3737 2.290260 TGGGACAGTTAGATGCACTTGG 60.290 50.000 0.00 0.00 0.00 3.61
2745 3746 3.446442 AGATGCACTTGGAACCTTCAT 57.554 42.857 0.00 0.00 0.00 2.57
2746 3747 3.087031 AGATGCACTTGGAACCTTCATG 58.913 45.455 0.00 0.00 0.00 3.07
2774 3777 3.701205 AAGGGGGTTGAATTTGCAATC 57.299 42.857 0.00 0.00 0.00 2.67
2780 3783 3.685756 GGGTTGAATTTGCAATCACCATG 59.314 43.478 16.57 0.00 30.47 3.66
2792 3795 1.206811 TCACCATGTGGCCCATCTGA 61.207 55.000 0.00 3.92 39.32 3.27
2798 3801 4.106179 ACCATGTGGCCCATCTGAATTATA 59.894 41.667 0.00 0.00 39.32 0.98
2799 3802 4.703575 CCATGTGGCCCATCTGAATTATAG 59.296 45.833 0.00 0.00 0.00 1.31
2800 3803 3.754965 TGTGGCCCATCTGAATTATAGC 58.245 45.455 0.00 0.00 0.00 2.97
2801 3804 3.138098 TGTGGCCCATCTGAATTATAGCA 59.862 43.478 0.00 0.00 0.00 3.49
2802 3805 3.503748 GTGGCCCATCTGAATTATAGCAC 59.496 47.826 0.00 0.00 0.00 4.40
2803 3806 3.138098 TGGCCCATCTGAATTATAGCACA 59.862 43.478 0.00 0.00 0.00 4.57
2805 3808 4.392940 GCCCATCTGAATTATAGCACAGT 58.607 43.478 0.00 0.00 0.00 3.55
2806 3809 4.214971 GCCCATCTGAATTATAGCACAGTG 59.785 45.833 0.00 0.00 0.00 3.66
2808 3811 5.468072 CCCATCTGAATTATAGCACAGTGAC 59.532 44.000 4.15 0.00 0.00 3.67
2809 3812 6.286758 CCATCTGAATTATAGCACAGTGACT 58.713 40.000 4.15 3.71 0.00 3.41
2810 3813 7.436933 CCATCTGAATTATAGCACAGTGACTA 58.563 38.462 4.15 5.97 0.00 2.59
2811 3814 8.093307 CCATCTGAATTATAGCACAGTGACTAT 58.907 37.037 4.15 12.67 33.71 2.12
2826 3829 9.337396 CACAGTGACTATAATAAAAGGCCATAA 57.663 33.333 5.01 0.00 0.00 1.90
2840 3843 4.202441 AGGCCATAATTTAGCAGTGACAG 58.798 43.478 5.01 0.00 0.00 3.51
2850 3853 0.610232 GCAGTGACAGGCCATTTCCT 60.610 55.000 5.01 0.00 36.78 3.36
2851 3854 1.457346 CAGTGACAGGCCATTTCCTC 58.543 55.000 5.01 0.00 33.25 3.71
2852 3855 1.067295 AGTGACAGGCCATTTCCTCA 58.933 50.000 5.01 0.00 33.25 3.86
2853 3856 1.168714 GTGACAGGCCATTTCCTCAC 58.831 55.000 5.01 2.10 33.25 3.51
2854 3857 1.067295 TGACAGGCCATTTCCTCACT 58.933 50.000 5.01 0.00 33.25 3.41
2859 3863 4.677182 ACAGGCCATTTCCTCACTTATTT 58.323 39.130 5.01 0.00 33.25 1.40
2885 3889 2.656947 AAGGCACCAGCTAAAAGTCA 57.343 45.000 0.00 0.00 41.70 3.41
3092 4098 1.689273 GAAGGGATGCTGATAGTCCGT 59.311 52.381 0.00 0.00 32.71 4.69
3104 4110 5.047943 GCTGATAGTCCGTGACTAATACCAT 60.048 44.000 14.92 2.45 46.28 3.55
3106 4112 7.626664 GCTGATAGTCCGTGACTAATACCATAG 60.627 44.444 14.92 8.66 46.28 2.23
3111 4119 5.068198 GTCCGTGACTAATACCATAGACCAA 59.932 44.000 0.00 0.00 0.00 3.67
3112 4120 5.836898 TCCGTGACTAATACCATAGACCAAT 59.163 40.000 0.00 0.00 0.00 3.16
3113 4121 7.005902 TCCGTGACTAATACCATAGACCAATA 58.994 38.462 0.00 0.00 0.00 1.90
3117 4125 8.148351 GTGACTAATACCATAGACCAATAAGCA 58.852 37.037 0.00 0.00 0.00 3.91
3130 4138 4.096382 ACCAATAAGCAAAGCCTAACATCG 59.904 41.667 0.00 0.00 0.00 3.84
3226 4234 2.753029 GCCAACTGCCACCTCTCT 59.247 61.111 0.00 0.00 0.00 3.10
3237 4245 3.053320 TGCCACCTCTCTATCTTCAGAGA 60.053 47.826 3.04 3.04 46.93 3.10
3363 4371 0.614979 ACCGATACACCTCAGCACCT 60.615 55.000 0.00 0.00 0.00 4.00
3452 4460 1.210931 CCAGGCATGACAAAGCGTG 59.789 57.895 0.00 15.12 43.90 5.34
3574 4582 2.354103 CGATGCTCCCAAGAGAGAAACA 60.354 50.000 0.00 0.00 43.39 2.83
3639 4648 0.469144 GGTTTCCCCCAGAGCAACAA 60.469 55.000 0.00 0.00 0.00 2.83
3651 4660 0.687354 AGCAACAAGAGTGGGTCGAT 59.313 50.000 0.00 0.00 0.00 3.59
3670 4679 4.805719 TCGATAGTAGTTACACGACGATGT 59.194 41.667 0.00 5.07 35.22 3.06
3691 4700 4.929211 TGTCTTCATCAAGGTAACGACATG 59.071 41.667 0.00 0.00 46.39 3.21
3701 4710 0.037697 TAACGACATGGAACGCTGCT 60.038 50.000 0.00 0.00 0.00 4.24
3707 4716 0.877649 CATGGAACGCTGCTATCGCT 60.878 55.000 0.00 0.00 36.97 4.93
3765 4781 2.058595 AACTCGCAGCCGGGACTAT 61.059 57.895 2.18 0.00 36.99 2.12
3780 4796 4.824537 CGGGACTATATGATGGATCTCGAT 59.175 45.833 0.00 0.00 0.00 3.59
3873 4892 1.277557 GAACAGATCTGCCAGAGGTGT 59.722 52.381 22.83 3.21 0.00 4.16
3893 4912 2.052690 GCCGAGCAGTCCACCTAGA 61.053 63.158 0.00 0.00 0.00 2.43
3894 4913 1.395826 GCCGAGCAGTCCACCTAGAT 61.396 60.000 0.00 0.00 0.00 1.98
3897 4916 1.336440 CGAGCAGTCCACCTAGATCTG 59.664 57.143 5.18 0.00 0.00 2.90
3899 4918 0.105778 GCAGTCCACCTAGATCTGCC 59.894 60.000 5.18 0.00 43.55 4.85
3900 4919 1.489481 CAGTCCACCTAGATCTGCCA 58.511 55.000 5.18 0.00 0.00 4.92
3903 4922 1.686052 GTCCACCTAGATCTGCCAGAG 59.314 57.143 5.18 0.00 0.00 3.35
3921 4952 1.375908 GAAGCCAGATGACGTGCCA 60.376 57.895 0.00 0.00 0.00 4.92
3943 4974 3.240134 AAGACCGCATCGCACCACT 62.240 57.895 0.00 0.00 0.00 4.00
4037 5111 4.912485 TCCACGCGCGTTCCCAAA 62.912 61.111 35.90 12.11 0.00 3.28
4054 5128 3.645268 AAACCCCTGAGATGCGGGC 62.645 63.158 0.00 0.00 42.12 6.13
4141 5242 0.831307 GAAGATGAGTTAGGCCCCGT 59.169 55.000 0.00 0.00 0.00 5.28
4156 5257 4.685026 CGTCGGCGGCTAGGATCG 62.685 72.222 10.76 0.74 0.00 3.69
4162 5263 4.044484 CGGCTAGGATCGCCCGAG 62.044 72.222 4.72 0.00 44.73 4.63
4163 5264 2.913060 GGCTAGGATCGCCCGAGT 60.913 66.667 0.00 0.00 41.73 4.18
4164 5265 2.336809 GCTAGGATCGCCCGAGTG 59.663 66.667 0.00 0.00 39.56 3.51
4165 5266 3.043419 CTAGGATCGCCCGAGTGG 58.957 66.667 0.00 0.00 40.87 4.00
4186 5287 4.570663 GACGCGGGGTCGATGGAG 62.571 72.222 12.47 0.00 39.00 3.86
4188 5289 4.143333 CGCGGGGTCGATGGAGTT 62.143 66.667 0.00 0.00 39.00 3.01
4189 5290 2.267961 GCGGGGTCGATGGAGTTT 59.732 61.111 0.00 0.00 39.00 2.66
4190 5291 1.376812 GCGGGGTCGATGGAGTTTT 60.377 57.895 0.00 0.00 39.00 2.43
4191 5292 1.366854 GCGGGGTCGATGGAGTTTTC 61.367 60.000 0.00 0.00 39.00 2.29
4192 5293 0.249398 CGGGGTCGATGGAGTTTTCT 59.751 55.000 0.00 0.00 39.00 2.52
4193 5294 1.739067 GGGGTCGATGGAGTTTTCTG 58.261 55.000 0.00 0.00 0.00 3.02
4194 5295 1.003233 GGGGTCGATGGAGTTTTCTGT 59.997 52.381 0.00 0.00 0.00 3.41
4195 5296 2.552373 GGGGTCGATGGAGTTTTCTGTT 60.552 50.000 0.00 0.00 0.00 3.16
4196 5297 2.484264 GGGTCGATGGAGTTTTCTGTTG 59.516 50.000 0.00 0.00 0.00 3.33
4197 5298 3.399330 GGTCGATGGAGTTTTCTGTTGA 58.601 45.455 0.00 0.00 0.00 3.18
4198 5299 3.433615 GGTCGATGGAGTTTTCTGTTGAG 59.566 47.826 0.00 0.00 0.00 3.02
4199 5300 4.058817 GTCGATGGAGTTTTCTGTTGAGT 58.941 43.478 0.00 0.00 0.00 3.41
4200 5301 4.058124 TCGATGGAGTTTTCTGTTGAGTG 58.942 43.478 0.00 0.00 0.00 3.51
4201 5302 4.058124 CGATGGAGTTTTCTGTTGAGTGA 58.942 43.478 0.00 0.00 0.00 3.41
4202 5303 4.151335 CGATGGAGTTTTCTGTTGAGTGAG 59.849 45.833 0.00 0.00 0.00 3.51
4203 5304 4.753516 TGGAGTTTTCTGTTGAGTGAGA 57.246 40.909 0.00 0.00 0.00 3.27
4204 5305 4.697514 TGGAGTTTTCTGTTGAGTGAGAG 58.302 43.478 0.00 0.00 0.00 3.20
4205 5306 4.405680 TGGAGTTTTCTGTTGAGTGAGAGA 59.594 41.667 0.00 0.00 0.00 3.10
4206 5307 4.987912 GGAGTTTTCTGTTGAGTGAGAGAG 59.012 45.833 0.00 0.00 0.00 3.20
4207 5308 5.452636 GGAGTTTTCTGTTGAGTGAGAGAGT 60.453 44.000 0.00 0.00 0.00 3.24
4208 5309 6.239064 GGAGTTTTCTGTTGAGTGAGAGAGTA 60.239 42.308 0.00 0.00 0.00 2.59
4209 5310 7.296628 AGTTTTCTGTTGAGTGAGAGAGTAT 57.703 36.000 0.00 0.00 0.00 2.12
4210 5311 7.731054 AGTTTTCTGTTGAGTGAGAGAGTATT 58.269 34.615 0.00 0.00 0.00 1.89
4211 5312 7.655328 AGTTTTCTGTTGAGTGAGAGAGTATTG 59.345 37.037 0.00 0.00 0.00 1.90
4212 5313 6.656632 TTCTGTTGAGTGAGAGAGTATTGT 57.343 37.500 0.00 0.00 0.00 2.71
4213 5314 6.260870 TCTGTTGAGTGAGAGAGTATTGTC 57.739 41.667 0.00 0.00 0.00 3.18
4214 5315 5.770162 TCTGTTGAGTGAGAGAGTATTGTCA 59.230 40.000 0.00 0.00 0.00 3.58
4215 5316 6.265422 TCTGTTGAGTGAGAGAGTATTGTCAA 59.735 38.462 0.00 0.00 0.00 3.18
4216 5317 6.997655 TGTTGAGTGAGAGAGTATTGTCAAT 58.002 36.000 3.06 3.06 0.00 2.57
4217 5318 8.122472 TGTTGAGTGAGAGAGTATTGTCAATA 57.878 34.615 0.89 0.89 0.00 1.90
4218 5319 8.246871 TGTTGAGTGAGAGAGTATTGTCAATAG 58.753 37.037 5.49 0.00 0.00 1.73
4219 5320 7.946381 TGAGTGAGAGAGTATTGTCAATAGT 57.054 36.000 11.94 11.94 0.00 2.12
4220 5321 7.990917 TGAGTGAGAGAGTATTGTCAATAGTC 58.009 38.462 24.30 24.30 41.88 2.59
4221 5322 7.067615 TGAGTGAGAGAGTATTGTCAATAGTCC 59.932 40.741 26.53 20.25 42.31 3.85
4222 5323 6.322712 AGTGAGAGAGTATTGTCAATAGTCCC 59.677 42.308 26.53 19.69 42.31 4.46
4282 5383 6.261603 ACCCGTAAAGACAAAACTAAAAGGAG 59.738 38.462 0.00 0.00 0.00 3.69
4284 5385 5.844396 CGTAAAGACAAAACTAAAAGGAGCG 59.156 40.000 0.00 0.00 0.00 5.03
4302 5403 4.083802 GGAGCGATCCAGGAAAAATATTCG 60.084 45.833 16.44 0.00 0.00 3.34
4322 5423 2.666619 CGTTCTTCAGTTTGCTGCATCC 60.667 50.000 1.84 0.00 42.29 3.51
4324 5425 2.799017 TCTTCAGTTTGCTGCATCCAT 58.201 42.857 1.84 0.00 42.29 3.41
4326 5427 4.334552 TCTTCAGTTTGCTGCATCCATAA 58.665 39.130 1.84 0.00 42.29 1.90
4332 5433 4.124238 GTTTGCTGCATCCATAATTGCAT 58.876 39.130 1.84 0.00 46.87 3.96
4335 5436 3.385111 TGCTGCATCCATAATTGCATCAA 59.615 39.130 0.00 0.00 46.87 2.57
4337 5438 3.985008 TGCATCCATAATTGCATCAAGC 58.015 40.909 0.00 0.00 43.54 4.01
4354 5456 1.846007 AGCACAGTTTGGTGGTCAAA 58.154 45.000 0.00 0.00 45.65 2.69
4363 5465 3.518634 TTGGTGGTCAAAGTTTGAAGC 57.481 42.857 19.63 14.73 42.15 3.86
4390 5492 7.582667 GGTTATGCAAGTAACCTATTCCAAT 57.417 36.000 18.21 0.00 46.53 3.16
4391 5493 7.649057 GGTTATGCAAGTAACCTATTCCAATC 58.351 38.462 18.21 0.00 46.53 2.67
4392 5494 7.255486 GGTTATGCAAGTAACCTATTCCAATCC 60.255 40.741 18.21 0.00 46.53 3.01
4393 5495 5.186256 TGCAAGTAACCTATTCCAATCCA 57.814 39.130 0.00 0.00 0.00 3.41
4421 5523 7.278203 GTGTCTTAACCAGATTTAGTCTAAGCC 59.722 40.741 0.00 0.00 34.69 4.35
4460 5563 2.580322 TGGGCCTTAATCATTCTGTCCA 59.420 45.455 4.53 0.00 0.00 4.02
4519 5622 4.392047 TCTCTGATTGCAACACATCACTT 58.608 39.130 0.00 0.00 0.00 3.16
4548 5651 7.040340 GCCTCTAGATTCACATACTGTAGCTAA 60.040 40.741 0.00 0.00 0.00 3.09
4549 5652 8.511321 CCTCTAGATTCACATACTGTAGCTAAG 58.489 40.741 0.00 0.00 0.00 2.18
4551 5654 9.278978 TCTAGATTCACATACTGTAGCTAAGAG 57.721 37.037 0.00 0.00 0.00 2.85
4552 5655 7.889873 AGATTCACATACTGTAGCTAAGAGT 57.110 36.000 10.67 10.67 0.00 3.24
4564 5672 3.996480 AGCTAAGAGTCACTTTGGTCAC 58.004 45.455 0.00 0.00 37.46 3.67
4569 5677 3.279434 AGAGTCACTTTGGTCACCAAAC 58.721 45.455 18.65 9.46 46.92 2.93
4576 5684 5.186797 TCACTTTGGTCACCAAACTCATTTT 59.813 36.000 18.65 0.00 46.92 1.82
4577 5685 5.874261 CACTTTGGTCACCAAACTCATTTTT 59.126 36.000 18.65 0.00 46.92 1.94
4578 5686 6.035975 CACTTTGGTCACCAAACTCATTTTTC 59.964 38.462 18.65 0.00 46.92 2.29
4579 5687 5.667539 TTGGTCACCAAACTCATTTTTCA 57.332 34.783 6.86 0.00 40.92 2.69
4591 5699 2.032799 TCATTTTTCAGACACACCGTGC 59.967 45.455 0.00 0.00 36.98 5.34
4595 5703 0.730265 TTCAGACACACCGTGCAAAC 59.270 50.000 0.00 0.00 36.98 2.93
4622 5730 2.572191 AAACGCCGATAATCGAGTGA 57.428 45.000 0.00 0.00 43.74 3.41
4649 5757 6.618287 TCGATCAATTTGTGTCTGAAAACT 57.382 33.333 0.00 0.00 0.00 2.66
4655 5763 7.919690 TCAATTTGTGTCTGAAAACTCTACTG 58.080 34.615 0.00 0.00 0.00 2.74
4658 5766 6.903883 TTGTGTCTGAAAACTCTACTGTTC 57.096 37.500 0.00 0.00 0.00 3.18
4683 5798 2.949177 TATGCACCAACCAGTTCACT 57.051 45.000 0.00 0.00 0.00 3.41
4684 5799 2.071778 ATGCACCAACCAGTTCACTT 57.928 45.000 0.00 0.00 0.00 3.16
4704 5819 2.434884 CCCTGCCGTGTACTGCTG 60.435 66.667 0.00 0.00 0.00 4.41
4760 5880 3.054948 TGATGAGGCATCATTGTCACTGA 60.055 43.478 16.04 0.00 46.39 3.41
4785 5905 1.604378 CAGATGGAGGCGAAACCCT 59.396 57.895 0.00 0.00 40.58 4.34
4814 5934 2.359602 GCCAGCAGCAGCAGAGAA 60.360 61.111 3.17 0.00 45.49 2.87
4838 5958 1.078848 AGGAAGCTACTGCAAGCCG 60.079 57.895 6.77 0.00 43.86 5.52
4840 5960 0.462759 GGAAGCTACTGCAAGCCGAT 60.463 55.000 6.77 0.00 43.86 4.18
4864 5984 0.757188 ACAATTTCGGTGGCAACCCA 60.757 50.000 4.14 0.00 44.42 4.51
4899 6019 0.116143 AGCTCCTCCTCCTGTGTCTT 59.884 55.000 0.00 0.00 0.00 3.01
4954 6077 1.073897 GGTGAACAAGGCAGAGGCT 59.926 57.895 0.00 0.00 41.24 4.58
4956 6079 1.443802 GTGAACAAGGCAGAGGCTAC 58.556 55.000 0.00 0.00 37.50 3.58
4959 6082 2.185310 AACAAGGCAGAGGCTACCGG 62.185 60.000 0.00 0.00 37.50 5.28
5017 6140 5.123502 CAGGATGGTTGAGCAAGATATATGC 59.876 44.000 5.09 5.09 44.15 3.14
5024 6147 2.184385 GCAAGATATATGCGGCATGC 57.816 50.000 24.99 15.51 46.70 4.06
5172 6295 3.454858 ACCCTTTCTGCTCTTCCATCTA 58.545 45.455 0.00 0.00 0.00 1.98
5200 6334 5.831702 AGCAGCCAAAATCTTCAGAATAG 57.168 39.130 0.00 0.00 0.00 1.73
5251 6385 4.151689 CGGATGCGAAAACTCTCTTGTTAA 59.848 41.667 0.00 0.00 0.00 2.01
5260 6394 7.254455 CGAAAACTCTCTTGTTAAAGAAGCTGA 60.254 37.037 0.00 0.00 41.89 4.26
5267 6407 7.332926 TCTCTTGTTAAAGAAGCTGATGATGAC 59.667 37.037 0.00 0.00 41.89 3.06
5270 6410 6.108687 TGTTAAAGAAGCTGATGATGACGAT 58.891 36.000 0.00 0.00 0.00 3.73
5285 6425 2.819019 TGACGATGATGCCAACAACATT 59.181 40.909 0.00 0.00 39.20 2.71
5301 6441 8.522830 CCAACAACATTAAGTGAATATCCAAGT 58.477 33.333 0.00 0.00 0.00 3.16
5340 6492 2.978978 TCAGTGATCCTTGACCCTGAAA 59.021 45.455 0.00 0.00 0.00 2.69
5345 6497 3.261897 TGATCCTTGACCCTGAAAGTCTC 59.738 47.826 0.00 0.00 35.21 3.36
5357 6509 4.754114 CCTGAAAGTCTCAAGAACCTGAAG 59.246 45.833 0.00 0.00 32.17 3.02
5372 6524 0.619832 TGAAGGCTGCTCCTCTCCAT 60.620 55.000 0.00 0.00 46.94 3.41
5385 6548 2.028294 CCTCTCCATACAGCCATGCTAG 60.028 54.545 0.00 0.00 36.40 3.42
5386 6549 2.632028 CTCTCCATACAGCCATGCTAGT 59.368 50.000 0.00 0.00 36.40 2.57
5387 6550 2.366590 TCTCCATACAGCCATGCTAGTG 59.633 50.000 0.00 0.00 36.40 2.74
5453 6616 4.404715 TGTACTAGTAGCCCCTGAATGAAC 59.595 45.833 1.87 0.00 0.00 3.18
5525 6692 2.086869 CTTGTCCCATGGTGCTTACTG 58.913 52.381 11.73 0.00 0.00 2.74
5792 6965 3.597182 TGATGTGGCCATCCCTATAAGA 58.403 45.455 9.72 0.00 45.78 2.10
5793 6966 3.980022 TGATGTGGCCATCCCTATAAGAA 59.020 43.478 9.72 0.00 45.78 2.52
5794 6967 4.415179 TGATGTGGCCATCCCTATAAGAAA 59.585 41.667 9.72 0.00 45.78 2.52
5795 6968 4.871871 TGTGGCCATCCCTATAAGAAAA 57.128 40.909 9.72 0.00 0.00 2.29
5796 6969 4.792068 TGTGGCCATCCCTATAAGAAAAG 58.208 43.478 9.72 0.00 0.00 2.27
5889 7073 5.731678 AGGTCCAGTTTTCTATCTAACCCAT 59.268 40.000 0.00 0.00 0.00 4.00
5893 7077 5.104109 CCAGTTTTCTATCTAACCCATGGGA 60.104 44.000 38.07 15.78 38.96 4.37
5894 7078 6.058183 CAGTTTTCTATCTAACCCATGGGAG 58.942 44.000 38.07 24.51 38.96 4.30
5895 7079 5.970640 AGTTTTCTATCTAACCCATGGGAGA 59.029 40.000 38.07 28.84 38.96 3.71
5896 7080 6.447084 AGTTTTCTATCTAACCCATGGGAGAA 59.553 38.462 38.07 28.15 38.96 2.87
5993 7177 4.709886 TGACGATCTGAAACCTATCTGGAA 59.290 41.667 0.00 0.00 39.71 3.53
5995 7179 4.466370 ACGATCTGAAACCTATCTGGAACA 59.534 41.667 0.00 0.00 39.71 3.18
6031 7215 5.164196 CGTTCGTCGAACCGATTAAAACTAA 60.164 40.000 27.62 0.00 39.14 2.24
6033 7217 5.698832 TCGTCGAACCGATTAAAACTAAGA 58.301 37.500 0.00 0.00 38.42 2.10
6086 7276 2.978978 TCTCACATGGAAAAGGAGACCA 59.021 45.455 0.00 0.00 38.09 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.358737 GGTCAAGTCGCCCACTGG 60.359 66.667 0.00 0.00 34.56 4.00
23 24 2.358737 GGGTCAAGTCGCCCACTG 60.359 66.667 0.00 0.00 44.23 3.66
24 25 3.637273 GGGGTCAAGTCGCCCACT 61.637 66.667 1.82 0.00 46.59 4.00
25 26 3.268103 ATGGGGTCAAGTCGCCCAC 62.268 63.158 0.00 0.00 46.59 4.61
56 57 3.083997 AGGCGAGATGGGTGGGAC 61.084 66.667 0.00 0.00 0.00 4.46
238 269 2.284417 CGGGGAGTACGTAACGTAGTAC 59.716 54.545 16.34 16.34 45.00 2.73
239 270 2.093869 ACGGGGAGTACGTAACGTAGTA 60.094 50.000 0.00 0.00 44.48 1.82
240 271 1.338769 ACGGGGAGTACGTAACGTAGT 60.339 52.381 0.00 0.00 46.64 2.73
241 272 1.369625 ACGGGGAGTACGTAACGTAG 58.630 55.000 0.00 0.00 43.06 3.51
299 336 1.743252 GGCACGAAGGAAGCAGAGG 60.743 63.158 0.00 0.00 0.00 3.69
302 340 3.121030 CGGGCACGAAGGAAGCAG 61.121 66.667 0.00 0.00 44.60 4.24
304 342 2.668550 AACGGGCACGAAGGAAGC 60.669 61.111 19.19 0.00 44.60 3.86
325 363 1.009335 GGTGTGAAACGGGCGAAAC 60.009 57.895 0.00 0.00 42.39 2.78
326 364 1.153127 AGGTGTGAAACGGGCGAAA 60.153 52.632 0.00 0.00 42.39 3.46
360 399 1.677576 CGTACTAGTATGTCCGGCCAA 59.322 52.381 13.15 0.00 0.00 4.52
362 401 1.312815 ACGTACTAGTATGTCCGGCC 58.687 55.000 19.96 0.00 29.89 6.13
363 402 2.096713 CGTACGTACTAGTATGTCCGGC 60.097 54.545 27.12 16.08 36.71 6.13
364 403 2.096713 GCGTACGTACTAGTATGTCCGG 60.097 54.545 29.81 20.98 35.73 5.14
365 404 2.797156 AGCGTACGTACTAGTATGTCCG 59.203 50.000 26.84 26.84 37.43 4.79
394 434 3.054655 AGCGAGGTTAATTAGGAGGCAAA 60.055 43.478 0.00 0.00 0.00 3.68
395 435 2.504175 AGCGAGGTTAATTAGGAGGCAA 59.496 45.455 0.00 0.00 0.00 4.52
396 436 2.116238 AGCGAGGTTAATTAGGAGGCA 58.884 47.619 0.00 0.00 0.00 4.75
397 437 2.872858 CAAGCGAGGTTAATTAGGAGGC 59.127 50.000 0.00 0.00 0.00 4.70
418 465 3.889520 AGAGGACAGGACCGAATTAAC 57.110 47.619 0.00 0.00 34.73 2.01
429 480 5.172205 GCTACTTAGTTCAAAGAGGACAGG 58.828 45.833 0.00 0.00 0.00 4.00
430 481 4.859798 CGCTACTTAGTTCAAAGAGGACAG 59.140 45.833 0.00 0.00 0.00 3.51
441 492 7.795272 TCGAAATTTGAAAACGCTACTTAGTTC 59.205 33.333 0.00 0.00 0.00 3.01
487 852 1.080025 GCTCCCGACTGCGTAACTT 60.080 57.895 0.00 0.00 35.23 2.66
489 854 1.080025 AAGCTCCCGACTGCGTAAC 60.080 57.895 0.00 0.00 35.23 2.50
494 859 2.437359 ATGCAAGCTCCCGACTGC 60.437 61.111 0.00 0.00 0.00 4.40
508 874 0.860533 GCTTGCGATGAGAGAGATGC 59.139 55.000 0.00 0.00 0.00 3.91
510 876 1.340889 GGAGCTTGCGATGAGAGAGAT 59.659 52.381 0.00 0.00 0.00 2.75
513 879 0.897621 TTGGAGCTTGCGATGAGAGA 59.102 50.000 0.00 0.00 0.00 3.10
522 890 0.108945 GCAGTTGGATTGGAGCTTGC 60.109 55.000 0.00 0.00 0.00 4.01
595 1038 1.434555 TTTCGAAACGATGGATGCGT 58.565 45.000 6.47 0.00 44.94 5.24
601 1056 4.678509 TCCTGAATTTTCGAAACGATGG 57.321 40.909 10.79 9.53 35.23 3.51
602 1057 5.912396 TGTTTCCTGAATTTTCGAAACGATG 59.088 36.000 10.79 0.47 35.23 3.84
603 1058 6.067263 TGTTTCCTGAATTTTCGAAACGAT 57.933 33.333 10.79 0.00 35.23 3.73
642 1114 0.035881 CAGGTGTCTGCCATGAGTGT 59.964 55.000 0.00 0.00 33.86 3.55
661 1137 1.884926 GCCGCTGCTGTCTCATACC 60.885 63.158 0.00 0.00 33.53 2.73
677 1160 3.130227 CCGTAGTAGCTCCCAGCC 58.870 66.667 0.00 0.00 43.77 4.85
736 1224 1.896660 GGAAAGGTTGCAGGCGTGA 60.897 57.895 11.29 0.00 0.00 4.35
737 1225 2.644992 GGAAAGGTTGCAGGCGTG 59.355 61.111 1.01 1.01 0.00 5.34
738 1226 2.597510 GGGAAAGGTTGCAGGCGT 60.598 61.111 0.00 0.00 0.00 5.68
740 1228 0.891904 TAACGGGAAAGGTTGCAGGC 60.892 55.000 0.00 0.00 0.00 4.85
777 1271 3.689347 TCCTGCATTTTACTGACTGCAT 58.311 40.909 0.00 0.00 43.12 3.96
778 1272 3.076621 CTCCTGCATTTTACTGACTGCA 58.923 45.455 0.00 0.00 41.98 4.41
779 1273 3.077359 ACTCCTGCATTTTACTGACTGC 58.923 45.455 0.00 0.00 35.21 4.40
780 1274 6.801539 TTTACTCCTGCATTTTACTGACTG 57.198 37.500 0.00 0.00 0.00 3.51
781 1275 6.770785 TGTTTTACTCCTGCATTTTACTGACT 59.229 34.615 0.00 0.00 0.00 3.41
782 1276 6.966021 TGTTTTACTCCTGCATTTTACTGAC 58.034 36.000 0.00 0.00 0.00 3.51
783 1277 6.770785 ACTGTTTTACTCCTGCATTTTACTGA 59.229 34.615 0.00 0.00 0.00 3.41
784 1278 6.970484 ACTGTTTTACTCCTGCATTTTACTG 58.030 36.000 0.00 0.00 0.00 2.74
863 1361 4.649705 TGCGGGTGGAGGGAAGGA 62.650 66.667 0.00 0.00 0.00 3.36
904 1402 1.541672 GAGAGGGGAGAGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
905 1403 1.541672 GGAGAGGGGAGAGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
906 1404 1.541672 GGGAGAGGGGAGAGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
907 1405 2.015726 GGGGAGAGGGGAGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
908 1406 2.018086 AGGGGAGAGGGGAGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
909 1407 2.015726 GAGGGGAGAGGGGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
910 1408 2.018086 AGAGGGGAGAGGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
911 1409 0.998945 AGAGAGGGGAGAGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
912 1410 0.996762 GAGAGAGGGGAGAGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
913 1411 0.998945 AGAGAGAGGGGAGAGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
914 1412 0.996762 GAGAGAGAGGGGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
926 1424 4.038763 GTCGGATGTAGAGAGAGAGAGAGA 59.961 50.000 0.00 0.00 0.00 3.10
927 1425 4.039245 AGTCGGATGTAGAGAGAGAGAGAG 59.961 50.000 0.00 0.00 0.00 3.20
928 1426 3.964688 AGTCGGATGTAGAGAGAGAGAGA 59.035 47.826 0.00 0.00 0.00 3.10
936 1434 1.957177 GCATGGAGTCGGATGTAGAGA 59.043 52.381 0.00 0.00 0.00 3.10
1150 1657 1.456705 CCTCCTCCTCCTCCTTCCG 60.457 68.421 0.00 0.00 0.00 4.30
1151 1658 1.074850 CCCTCCTCCTCCTCCTTCC 60.075 68.421 0.00 0.00 0.00 3.46
1152 1659 1.074850 CCCCTCCTCCTCCTCCTTC 60.075 68.421 0.00 0.00 0.00 3.46
1675 2212 3.151022 CTCCTCCTGCCCGTCTCC 61.151 72.222 0.00 0.00 0.00 3.71
1735 2272 2.203167 CGGCTCTGCATGCTCCAT 60.203 61.111 20.33 0.00 0.00 3.41
1761 2298 0.874607 ACGACGACAAACCTGAGCAC 60.875 55.000 0.00 0.00 0.00 4.40
1762 2299 0.596600 GACGACGACAAACCTGAGCA 60.597 55.000 0.00 0.00 0.00 4.26
1830 2367 0.394938 TTTGTACTGGCCTCGCTGAA 59.605 50.000 3.32 0.00 0.00 3.02
1832 2369 1.453155 AATTTGTACTGGCCTCGCTG 58.547 50.000 3.32 0.00 0.00 5.18
1839 2376 6.099341 CACCCTGAATTTAATTTGTACTGGC 58.901 40.000 0.00 0.00 0.00 4.85
1840 2377 6.630071 CCACCCTGAATTTAATTTGTACTGG 58.370 40.000 0.00 0.00 0.00 4.00
1849 2386 5.025453 AGTGAATGCCACCCTGAATTTAAT 58.975 37.500 0.00 0.00 46.87 1.40
1855 2392 2.238521 GAAAGTGAATGCCACCCTGAA 58.761 47.619 0.00 0.00 46.87 3.02
1857 2394 0.523072 CGAAAGTGAATGCCACCCTG 59.477 55.000 0.00 0.00 46.87 4.45
1860 2397 1.243902 TTCCGAAAGTGAATGCCACC 58.756 50.000 0.00 0.00 46.87 4.61
1968 2510 3.748048 TCTTTTCTGAAGGCGAATGTCAG 59.252 43.478 0.00 0.00 40.15 3.51
1971 2513 5.514274 TTTTCTTTTCTGAAGGCGAATGT 57.486 34.783 0.00 0.00 0.00 2.71
2027 2569 8.160106 ACTCCAATTTTAACTGATGTCTCTCTT 58.840 33.333 0.00 0.00 0.00 2.85
2035 2578 8.306038 TGAATTCCACTCCAATTTTAACTGATG 58.694 33.333 2.27 0.00 0.00 3.07
2096 2641 9.298774 CTATTTGATTCCAGCTGATTTTTCTTC 57.701 33.333 17.39 1.22 0.00 2.87
2097 2642 8.810041 ACTATTTGATTCCAGCTGATTTTTCTT 58.190 29.630 17.39 0.00 0.00 2.52
2099 2644 9.508567 GTACTATTTGATTCCAGCTGATTTTTC 57.491 33.333 17.39 5.29 0.00 2.29
2126 2707 4.067896 CTGAACTTTCATAGTGCACTGGT 58.932 43.478 29.57 14.88 37.51 4.00
2153 2899 5.106436 TGTTCTCATGAAATTAGCAGTGCAG 60.106 40.000 19.20 1.42 33.52 4.41
2219 2965 5.429957 AACTCTGAGAAACAATCACTTGC 57.570 39.130 12.44 0.00 35.69 4.01
2307 3053 1.408702 CCACAAACTTGTCCCTGTTGG 59.591 52.381 0.00 0.00 39.91 3.77
2382 3128 2.863809 ACACTAGCCCAAGACTTTTGG 58.136 47.619 0.00 0.00 39.25 3.28
2395 3142 3.311486 ACAGAAGCTCAGAACACTAGC 57.689 47.619 0.00 0.00 36.48 3.42
2437 3184 4.394300 CAGAGTTGACAGGGACAAATGATC 59.606 45.833 0.00 0.00 0.00 2.92
2442 3189 4.703897 CTTACAGAGTTGACAGGGACAAA 58.296 43.478 0.00 0.00 0.00 2.83
2489 3236 1.344065 ACTGTCCCCGTGATGTGTTA 58.656 50.000 0.00 0.00 0.00 2.41
2500 3247 2.717639 ATGTGCATCTAACTGTCCCC 57.282 50.000 0.00 0.00 0.00 4.81
2535 3284 7.530426 ACTTGCAAATTCAACTCTCCTTATT 57.470 32.000 0.00 0.00 0.00 1.40
2575 3324 1.335496 TGTCGCTGTTAAACTTTGGCC 59.665 47.619 0.00 0.00 0.00 5.36
2577 3326 2.604614 GCCTGTCGCTGTTAAACTTTGG 60.605 50.000 0.00 0.00 0.00 3.28
2578 3327 2.604614 GGCCTGTCGCTGTTAAACTTTG 60.605 50.000 0.00 0.00 37.74 2.77
2579 3328 1.607148 GGCCTGTCGCTGTTAAACTTT 59.393 47.619 0.00 0.00 37.74 2.66
2580 3329 1.235724 GGCCTGTCGCTGTTAAACTT 58.764 50.000 0.00 0.00 37.74 2.66
2591 3368 1.813513 AGTGAGAAAATGGCCTGTCG 58.186 50.000 3.32 0.00 0.00 4.35
2628 3405 1.144936 GGATCAGGGCACGAGGAAG 59.855 63.158 0.00 0.00 0.00 3.46
2631 3408 2.370445 AAGGGATCAGGGCACGAGG 61.370 63.158 0.00 0.00 0.00 4.63
2634 3411 1.450312 GACAAGGGATCAGGGCACG 60.450 63.158 0.00 0.00 0.00 5.34
2646 3423 1.417890 ACAGAGTTGACAGGGACAAGG 59.582 52.381 0.00 0.00 0.00 3.61
2676 3453 3.077359 GTTACAATCTGCACCAGAGCTT 58.923 45.455 1.20 0.00 44.08 3.74
2701 3478 4.039092 CCCAGCCTCCCACAGTGG 62.039 72.222 13.35 13.35 37.25 4.00
2707 3484 0.909610 CTAACTGTCCCAGCCTCCCA 60.910 60.000 0.00 0.00 34.37 4.37
2713 3490 1.065854 AGTGCATCTAACTGTCCCAGC 60.066 52.381 0.00 0.00 34.37 4.85
2714 3491 3.005554 CAAGTGCATCTAACTGTCCCAG 58.994 50.000 0.00 0.00 37.52 4.45
2752 3753 3.941704 TTGCAAATTCAACCCCCTTTT 57.058 38.095 0.00 0.00 0.00 2.27
2753 3754 3.393941 TGATTGCAAATTCAACCCCCTTT 59.606 39.130 1.71 0.00 0.00 3.11
2756 3757 2.615240 GGTGATTGCAAATTCAACCCCC 60.615 50.000 1.71 0.00 0.00 5.40
2757 3758 2.038295 TGGTGATTGCAAATTCAACCCC 59.962 45.455 14.05 8.02 0.00 4.95
2759 3760 4.152759 CACATGGTGATTGCAAATTCAACC 59.847 41.667 14.05 12.21 35.23 3.77
2769 3772 1.332144 ATGGGCCACATGGTGATTGC 61.332 55.000 9.28 0.00 38.70 3.56
2774 3777 0.323633 TTCAGATGGGCCACATGGTG 60.324 55.000 9.28 1.85 40.72 4.17
2780 3783 3.503748 GTGCTATAATTCAGATGGGCCAC 59.496 47.826 9.28 2.67 0.00 5.01
2798 3801 5.823045 GGCCTTTTATTATAGTCACTGTGCT 59.177 40.000 2.12 6.46 0.00 4.40
2799 3802 5.588648 TGGCCTTTTATTATAGTCACTGTGC 59.411 40.000 3.32 0.00 0.00 4.57
2800 3803 7.807977 ATGGCCTTTTATTATAGTCACTGTG 57.192 36.000 3.32 0.17 0.00 3.66
2811 3814 9.415008 TCACTGCTAAATTATGGCCTTTTATTA 57.585 29.630 3.32 0.00 0.00 0.98
2812 3815 8.197439 GTCACTGCTAAATTATGGCCTTTTATT 58.803 33.333 3.32 0.00 0.00 1.40
2814 3817 6.661377 TGTCACTGCTAAATTATGGCCTTTTA 59.339 34.615 3.32 2.68 0.00 1.52
2826 3829 2.814805 ATGGCCTGTCACTGCTAAAT 57.185 45.000 3.32 0.00 0.00 1.40
2831 3834 0.610232 AGGAAATGGCCTGTCACTGC 60.610 55.000 3.32 0.00 36.76 4.40
2840 3843 5.885912 TCAGTAAATAAGTGAGGAAATGGCC 59.114 40.000 0.00 0.00 32.37 5.36
2850 3853 6.953101 TGGTGCCTTATCAGTAAATAAGTGA 58.047 36.000 0.00 0.00 41.80 3.41
2851 3854 6.238484 GCTGGTGCCTTATCAGTAAATAAGTG 60.238 42.308 0.00 0.00 39.83 3.16
2852 3855 5.823045 GCTGGTGCCTTATCAGTAAATAAGT 59.177 40.000 0.00 0.00 39.83 2.24
2853 3856 6.058183 AGCTGGTGCCTTATCAGTAAATAAG 58.942 40.000 0.00 0.00 39.83 1.73
2854 3857 6.001449 AGCTGGTGCCTTATCAGTAAATAA 57.999 37.500 0.00 0.00 39.83 1.40
2859 3863 5.045869 ACTTTTAGCTGGTGCCTTATCAGTA 60.046 40.000 0.00 0.00 39.83 2.74
3021 4026 0.895530 CCTAGACGGTGGCTTCAGAA 59.104 55.000 0.00 0.00 0.00 3.02
3092 4098 8.257602 TGCTTATTGGTCTATGGTATTAGTCA 57.742 34.615 0.00 0.00 0.00 3.41
3104 4110 5.811190 TGTTAGGCTTTGCTTATTGGTCTA 58.189 37.500 0.00 0.00 0.00 2.59
3106 4112 5.582550 GATGTTAGGCTTTGCTTATTGGTC 58.417 41.667 0.00 0.00 0.00 4.02
3111 4119 5.294552 GTCTTCGATGTTAGGCTTTGCTTAT 59.705 40.000 0.00 0.00 0.00 1.73
3112 4120 4.630069 GTCTTCGATGTTAGGCTTTGCTTA 59.370 41.667 0.00 0.00 0.00 3.09
3113 4121 3.437049 GTCTTCGATGTTAGGCTTTGCTT 59.563 43.478 0.00 0.00 0.00 3.91
3117 4125 3.260884 TCAGGTCTTCGATGTTAGGCTTT 59.739 43.478 0.00 0.00 0.00 3.51
3130 4138 1.002011 GTTGGGGCCTCAGGTCTTC 60.002 63.158 4.89 0.00 0.00 2.87
3226 4234 4.881850 TGCGTCAGTACATCTCTGAAGATA 59.118 41.667 11.57 0.00 40.38 1.98
3237 4245 3.002791 CAAGGTTGATGCGTCAGTACAT 58.997 45.455 8.93 0.10 35.39 2.29
3363 4371 0.537143 CTGGTGGTACTTGGCAGCAA 60.537 55.000 0.00 0.00 0.00 3.91
3639 4648 4.880696 GTGTAACTACTATCGACCCACTCT 59.119 45.833 0.00 0.00 0.00 3.24
3651 4660 5.639082 TGAAGACATCGTCGTGTAACTACTA 59.361 40.000 0.00 0.00 37.67 1.82
3670 4679 4.221924 TCCATGTCGTTACCTTGATGAAGA 59.778 41.667 0.00 0.00 0.00 2.87
3780 4796 2.173356 CCAGAGGCTTGGTGATTGGATA 59.827 50.000 7.35 0.00 33.38 2.59
3873 4892 3.931190 TAGGTGGACTGCTCGGCGA 62.931 63.158 10.14 10.14 0.00 5.54
3890 4909 2.165357 TGGCTTCTCTGGCAGATCTA 57.835 50.000 19.11 3.87 37.59 1.98
3897 4916 0.809241 CGTCATCTGGCTTCTCTGGC 60.809 60.000 0.00 0.00 0.00 4.85
3899 4918 1.638133 CACGTCATCTGGCTTCTCTG 58.362 55.000 0.00 0.00 0.00 3.35
3900 4919 0.108424 GCACGTCATCTGGCTTCTCT 60.108 55.000 0.00 0.00 0.00 3.10
3903 4922 1.375908 TGGCACGTCATCTGGCTTC 60.376 57.895 0.00 0.00 35.27 3.86
3921 4952 4.063967 TGCGATGCGGTCTTCGGT 62.064 61.111 0.00 0.00 39.41 4.69
4169 5270 4.570663 CTCCATCGACCCCGCGTC 62.571 72.222 4.92 0.00 38.21 5.19
4171 5272 3.659089 AAACTCCATCGACCCCGCG 62.659 63.158 0.00 0.00 35.37 6.46
4172 5273 1.366854 GAAAACTCCATCGACCCCGC 61.367 60.000 0.00 0.00 35.37 6.13
4173 5274 0.249398 AGAAAACTCCATCGACCCCG 59.751 55.000 0.00 0.00 37.07 5.73
4174 5275 1.003233 ACAGAAAACTCCATCGACCCC 59.997 52.381 0.00 0.00 0.00 4.95
4175 5276 2.474410 ACAGAAAACTCCATCGACCC 57.526 50.000 0.00 0.00 0.00 4.46
4176 5277 3.399330 TCAACAGAAAACTCCATCGACC 58.601 45.455 0.00 0.00 0.00 4.79
4177 5278 4.058817 ACTCAACAGAAAACTCCATCGAC 58.941 43.478 0.00 0.00 0.00 4.20
4178 5279 4.058124 CACTCAACAGAAAACTCCATCGA 58.942 43.478 0.00 0.00 0.00 3.59
4179 5280 4.058124 TCACTCAACAGAAAACTCCATCG 58.942 43.478 0.00 0.00 0.00 3.84
4180 5281 5.300752 TCTCACTCAACAGAAAACTCCATC 58.699 41.667 0.00 0.00 0.00 3.51
4181 5282 5.070981 TCTCTCACTCAACAGAAAACTCCAT 59.929 40.000 0.00 0.00 0.00 3.41
4182 5283 4.405680 TCTCTCACTCAACAGAAAACTCCA 59.594 41.667 0.00 0.00 0.00 3.86
4183 5284 4.950050 TCTCTCACTCAACAGAAAACTCC 58.050 43.478 0.00 0.00 0.00 3.85
4184 5285 5.596845 ACTCTCTCACTCAACAGAAAACTC 58.403 41.667 0.00 0.00 0.00 3.01
4185 5286 5.606348 ACTCTCTCACTCAACAGAAAACT 57.394 39.130 0.00 0.00 0.00 2.66
4186 5287 7.439655 ACAATACTCTCTCACTCAACAGAAAAC 59.560 37.037 0.00 0.00 0.00 2.43
4187 5288 7.500992 ACAATACTCTCTCACTCAACAGAAAA 58.499 34.615 0.00 0.00 0.00 2.29
4188 5289 7.055667 ACAATACTCTCTCACTCAACAGAAA 57.944 36.000 0.00 0.00 0.00 2.52
4189 5290 6.265422 TGACAATACTCTCTCACTCAACAGAA 59.735 38.462 0.00 0.00 0.00 3.02
4190 5291 5.770162 TGACAATACTCTCTCACTCAACAGA 59.230 40.000 0.00 0.00 0.00 3.41
4191 5292 6.018589 TGACAATACTCTCTCACTCAACAG 57.981 41.667 0.00 0.00 0.00 3.16
4192 5293 6.405278 TTGACAATACTCTCTCACTCAACA 57.595 37.500 0.00 0.00 0.00 3.33
4193 5294 8.247562 ACTATTGACAATACTCTCTCACTCAAC 58.752 37.037 3.68 0.00 0.00 3.18
4194 5295 8.354711 ACTATTGACAATACTCTCTCACTCAA 57.645 34.615 3.68 0.00 0.00 3.02
4195 5296 7.067615 GGACTATTGACAATACTCTCTCACTCA 59.932 40.741 3.68 0.00 0.00 3.41
4196 5297 7.422399 GGACTATTGACAATACTCTCTCACTC 58.578 42.308 3.68 0.00 0.00 3.51
4197 5298 6.322712 GGGACTATTGACAATACTCTCTCACT 59.677 42.308 3.68 0.00 0.00 3.41
4198 5299 6.322712 AGGGACTATTGACAATACTCTCTCAC 59.677 42.308 10.03 1.17 36.02 3.51
4199 5300 6.436027 AGGGACTATTGACAATACTCTCTCA 58.564 40.000 10.03 0.00 36.02 3.27
4200 5301 6.969993 AGGGACTATTGACAATACTCTCTC 57.030 41.667 10.03 4.03 36.02 3.20
4216 5317 9.889388 TCTTCTACTAGTAGTACATAGGGACTA 57.111 37.037 25.58 0.00 38.71 2.59
4217 5318 8.795899 TCTTCTACTAGTAGTACATAGGGACT 57.204 38.462 25.58 0.00 37.14 3.85
4261 5362 6.951643 TCGCTCCTTTTAGTTTTGTCTTTAC 58.048 36.000 0.00 0.00 0.00 2.01
4267 5368 4.394729 TGGATCGCTCCTTTTAGTTTTGT 58.605 39.130 6.88 0.00 42.59 2.83
4282 5383 4.813296 ACGAATATTTTTCCTGGATCGC 57.187 40.909 12.15 0.00 32.68 4.58
4284 5385 7.985476 TGAAGAACGAATATTTTTCCTGGATC 58.015 34.615 0.00 0.00 0.00 3.36
4332 5433 1.340502 TGACCACCAAACTGTGCTTGA 60.341 47.619 0.00 0.00 34.85 3.02
4335 5436 1.750778 CTTTGACCACCAAACTGTGCT 59.249 47.619 0.00 0.00 39.65 4.40
4337 5438 3.866883 AACTTTGACCACCAAACTGTG 57.133 42.857 0.00 0.00 39.65 3.66
4341 5442 3.616821 GCTTCAAACTTTGACCACCAAAC 59.383 43.478 3.56 0.00 39.65 2.93
4342 5443 3.513515 AGCTTCAAACTTTGACCACCAAA 59.486 39.130 3.56 0.00 42.07 3.28
4345 5446 3.447742 CAAGCTTCAAACTTTGACCACC 58.552 45.455 3.56 0.00 39.87 4.61
4352 5454 5.275067 TGCATAACCAAGCTTCAAACTTT 57.725 34.783 0.00 0.00 0.00 2.66
4354 5456 4.342092 ACTTGCATAACCAAGCTTCAAACT 59.658 37.500 0.00 0.00 44.66 2.66
4388 5490 8.164070 ACTAAATCTGGTTAAGACACTTGGATT 58.836 33.333 0.00 0.00 37.88 3.01
4389 5491 7.690256 ACTAAATCTGGTTAAGACACTTGGAT 58.310 34.615 0.00 0.00 37.88 3.41
4390 5492 7.016268 AGACTAAATCTGGTTAAGACACTTGGA 59.984 37.037 0.00 0.00 37.88 3.53
4391 5493 7.162082 AGACTAAATCTGGTTAAGACACTTGG 58.838 38.462 0.00 0.00 37.88 3.61
4392 5494 9.706691 TTAGACTAAATCTGGTTAAGACACTTG 57.293 33.333 0.00 0.00 38.49 3.16
4393 5495 9.930693 CTTAGACTAAATCTGGTTAAGACACTT 57.069 33.333 0.00 0.00 38.49 3.16
4421 5523 1.337260 CCAAGAAGACGAGGTCACAGG 60.337 57.143 0.00 0.00 34.60 4.00
4548 5651 3.644966 TTTGGTGACCAAAGTGACTCT 57.355 42.857 24.84 0.00 46.92 3.24
4564 5672 5.043248 GGTGTGTCTGAAAAATGAGTTTGG 58.957 41.667 0.00 0.00 0.00 3.28
4569 5677 3.849645 GCACGGTGTGTCTGAAAAATGAG 60.850 47.826 10.24 0.00 35.75 2.90
4576 5684 0.730265 GTTTGCACGGTGTGTCTGAA 59.270 50.000 10.24 0.00 35.75 3.02
4577 5685 0.391793 TGTTTGCACGGTGTGTCTGA 60.392 50.000 10.24 0.00 35.75 3.27
4578 5686 0.449786 TTGTTTGCACGGTGTGTCTG 59.550 50.000 10.24 0.00 35.75 3.51
4579 5687 1.169577 TTTGTTTGCACGGTGTGTCT 58.830 45.000 10.24 0.00 35.75 3.41
4606 5714 2.331809 TGATCACTCGATTATCGGCG 57.668 50.000 14.86 0.00 40.88 6.46
4622 5730 6.990341 TTCAGACACAAATTGATCGATGAT 57.010 33.333 0.54 0.00 0.00 2.45
4649 5757 5.616270 TGGTGCATAAAACTGAACAGTAGA 58.384 37.500 7.90 0.00 41.58 2.59
4655 5763 4.202111 ACTGGTTGGTGCATAAAACTGAAC 60.202 41.667 11.51 0.00 0.00 3.18
4658 5766 4.202101 TGAACTGGTTGGTGCATAAAACTG 60.202 41.667 0.00 0.00 0.00 3.16
4683 5798 0.320946 GCAGTACACGGCAGGGTTAA 60.321 55.000 0.00 0.00 37.03 2.01
4684 5799 1.189524 AGCAGTACACGGCAGGGTTA 61.190 55.000 0.00 0.00 39.54 2.85
4704 5819 7.927048 ACAAACAAACTGATTAACAGGTACTC 58.073 34.615 0.00 0.00 46.91 2.59
4756 5876 2.171448 GCCTCCATCTGGTACATTCAGT 59.829 50.000 0.00 0.00 38.20 3.41
4760 5880 1.496060 TCGCCTCCATCTGGTACATT 58.504 50.000 0.00 0.00 38.20 2.71
4798 5918 0.887836 TTGTTCTCTGCTGCTGCTGG 60.888 55.000 19.63 11.50 40.48 4.85
4806 5926 1.003003 GCTTCCTCCTTGTTCTCTGCT 59.997 52.381 0.00 0.00 0.00 4.24
4814 5934 1.352083 TGCAGTAGCTTCCTCCTTGT 58.648 50.000 0.00 0.00 42.74 3.16
4876 5996 3.535962 CAGGAGGAGGAGCTCGCC 61.536 72.222 14.58 14.58 35.38 5.54
4899 6019 4.782691 TCCTATCCCTGTCTGAACATTTCA 59.217 41.667 0.00 0.00 38.17 2.69
5048 6171 1.660560 GCCATCTCCGCTGCAATGTT 61.661 55.000 0.00 0.00 0.00 2.71
5067 6190 2.361757 AGCTGATCAAGGATCTCTGACG 59.638 50.000 7.64 0.00 39.56 4.35
5114 6237 1.273606 TCAGACCAGAGTTAGCTGCAC 59.726 52.381 1.02 0.00 34.56 4.57
5126 6249 5.734720 ACCATGTACAGTTATTCAGACCAG 58.265 41.667 0.33 0.00 0.00 4.00
5172 6295 3.638160 TGAAGATTTTGGCTGCTTCTTGT 59.362 39.130 0.00 0.00 38.03 3.16
5200 6334 2.158449 CCGACAGCTTCATCTTGTTCAC 59.842 50.000 0.00 0.00 0.00 3.18
5223 6357 1.706287 GAGTTTTCGCATCCGGAGCC 61.706 60.000 11.34 1.66 34.56 4.70
5251 6385 4.397481 TCATCGTCATCATCAGCTTCTT 57.603 40.909 0.00 0.00 0.00 2.52
5260 6394 2.921821 TGTTGGCATCATCGTCATCAT 58.078 42.857 0.00 0.00 0.00 2.45
5267 6407 4.794762 CACTTAATGTTGTTGGCATCATCG 59.205 41.667 0.00 0.00 34.85 3.84
5270 6410 5.781210 TTCACTTAATGTTGTTGGCATCA 57.219 34.783 0.00 0.00 0.00 3.07
5327 6478 3.071602 TCTTGAGACTTTCAGGGTCAAGG 59.928 47.826 9.79 0.00 42.84 3.61
5333 6484 3.071602 TCAGGTTCTTGAGACTTTCAGGG 59.928 47.826 0.00 0.00 37.07 4.45
5334 6485 4.342862 TCAGGTTCTTGAGACTTTCAGG 57.657 45.455 0.00 0.00 37.07 3.86
5340 6492 2.038295 CAGCCTTCAGGTTCTTGAGACT 59.962 50.000 0.00 0.00 37.57 3.24
5345 6497 1.163554 GAGCAGCCTTCAGGTTCTTG 58.836 55.000 0.00 0.00 37.57 3.02
5357 6509 0.392336 CTGTATGGAGAGGAGCAGCC 59.608 60.000 0.00 0.00 0.00 4.85
5372 6524 3.007940 AGTTTCACACTAGCATGGCTGTA 59.992 43.478 0.07 0.00 40.10 2.74
5385 6548 6.560711 AGGAAAAACATGTACAGTTTCACAC 58.439 36.000 17.83 11.65 38.17 3.82
5386 6549 6.183360 GGAGGAAAAACATGTACAGTTTCACA 60.183 38.462 17.83 0.00 38.17 3.58
5387 6550 6.206498 GGAGGAAAAACATGTACAGTTTCAC 58.794 40.000 17.83 14.96 38.17 3.18
5525 6692 4.152580 GGTTTAGTCTTTAGTGCAGTGAGC 59.847 45.833 3.69 0.00 45.96 4.26
5792 6965 3.551846 ACGTGGTGATGACCTTTCTTTT 58.448 40.909 2.11 0.00 43.58 2.27
5793 6966 3.139077 GACGTGGTGATGACCTTTCTTT 58.861 45.455 2.11 0.00 43.58 2.52
5794 6967 2.767505 GACGTGGTGATGACCTTTCTT 58.232 47.619 2.11 0.00 43.58 2.52
5795 6968 1.336887 CGACGTGGTGATGACCTTTCT 60.337 52.381 2.11 0.00 43.58 2.52
5796 6969 1.068474 CGACGTGGTGATGACCTTTC 58.932 55.000 2.11 0.00 43.58 2.62
5842 7020 2.321263 CTGCTCACCGGCCTGATCAT 62.321 60.000 0.00 0.00 0.00 2.45
5889 7073 1.362224 CACCTTTCCTCCTTCTCCCA 58.638 55.000 0.00 0.00 0.00 4.37
5893 7077 2.037385 AGAGCACCTTTCCTCCTTCT 57.963 50.000 0.00 0.00 0.00 2.85
5894 7078 2.093394 GGTAGAGCACCTTTCCTCCTTC 60.093 54.545 0.00 0.00 44.79 3.46
5895 7079 1.909986 GGTAGAGCACCTTTCCTCCTT 59.090 52.381 0.00 0.00 44.79 3.36
5896 7080 1.574263 GGTAGAGCACCTTTCCTCCT 58.426 55.000 0.00 0.00 44.79 3.69
5993 7177 1.289109 CGAACGGCGACAAATCCTGT 61.289 55.000 16.62 0.00 44.57 4.00
5995 7179 1.005394 ACGAACGGCGACAAATCCT 60.005 52.632 16.62 0.00 44.57 3.24
6031 7215 3.054065 CCCTCTGAAAGCAACCCTAATCT 60.054 47.826 0.00 0.00 0.00 2.40
6033 7217 2.919602 TCCCTCTGAAAGCAACCCTAAT 59.080 45.455 0.00 0.00 0.00 1.73
6086 7276 3.081061 TGATTACGGCTGTCTGCAATTT 58.919 40.909 0.00 0.00 45.15 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.