Multiple sequence alignment - TraesCS1B01G087500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G087500 chr1B 100.000 3162 0 0 1 3162 82061613 82064774 0.000000e+00 5840
1 TraesCS1B01G087500 chr1B 98.113 212 4 0 2561 2772 301254348 301254137 1.390000e-98 370
2 TraesCS1B01G087500 chr5D 91.751 1782 111 17 805 2564 16203359 16201592 0.000000e+00 2444
3 TraesCS1B01G087500 chr5D 94.670 394 19 1 2771 3162 16201612 16201219 7.500000e-171 610
4 TraesCS1B01G087500 chr5D 86.038 530 70 4 1 528 220674041 220674568 1.650000e-157 566
5 TraesCS1B01G087500 chr5D 85.876 531 71 4 1 528 536240055 536239526 2.130000e-156 562
6 TraesCS1B01G087500 chr5D 98.571 210 3 0 2561 2770 30614123 30613914 3.850000e-99 372
7 TraesCS1B01G087500 chr5D 87.166 187 20 2 627 813 16232769 16232587 3.200000e-50 209
8 TraesCS1B01G087500 chr7B 87.006 531 65 4 1 528 104298863 104298334 2.100000e-166 595
9 TraesCS1B01G087500 chr7D 86.923 520 67 1 1 519 628135027 628134508 1.630000e-162 582
10 TraesCS1B01G087500 chr7D 86.226 530 64 6 1 528 515486705 515487227 1.650000e-157 566
11 TraesCS1B01G087500 chr2A 86.923 520 65 3 1 519 66767727 66767210 5.880000e-162 580
12 TraesCS1B01G087500 chr3D 86.148 527 72 1 3 528 15377188 15377714 4.580000e-158 568
13 TraesCS1B01G087500 chr3D 98.565 209 3 0 2561 2769 602107259 602107467 1.390000e-98 370
14 TraesCS1B01G087500 chr1D 86.038 530 69 3 1 528 110975660 110976186 5.920000e-157 564
15 TraesCS1B01G087500 chr6D 85.472 530 75 2 1 528 20134565 20135094 4.610000e-153 551
16 TraesCS1B01G087500 chr6D 97.630 211 5 0 2561 2771 470049872 470049662 2.320000e-96 363
17 TraesCS1B01G087500 chr5B 96.380 221 7 1 2561 2781 26946695 26946476 2.320000e-96 363
18 TraesCS1B01G087500 chr2D 97.630 211 5 0 2561 2771 647736526 647736316 2.320000e-96 363
19 TraesCS1B01G087500 chr2D 96.714 213 7 0 2563 2775 517092898 517093110 3.880000e-94 355
20 TraesCS1B01G087500 chr4D 97.608 209 5 0 2561 2769 232027078 232027286 3.000000e-95 359
21 TraesCS1B01G087500 chr6B 95.890 219 8 1 2563 2780 536107638 536107856 1.400000e-93 353


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G087500 chr1B 82061613 82064774 3161 False 5840 5840 100.0000 1 3162 1 chr1B.!!$F1 3161
1 TraesCS1B01G087500 chr5D 16201219 16203359 2140 True 1527 2444 93.2105 805 3162 2 chr5D.!!$R4 2357
2 TraesCS1B01G087500 chr5D 220674041 220674568 527 False 566 566 86.0380 1 528 1 chr5D.!!$F1 527
3 TraesCS1B01G087500 chr5D 536239526 536240055 529 True 562 562 85.8760 1 528 1 chr5D.!!$R3 527
4 TraesCS1B01G087500 chr7B 104298334 104298863 529 True 595 595 87.0060 1 528 1 chr7B.!!$R1 527
5 TraesCS1B01G087500 chr7D 628134508 628135027 519 True 582 582 86.9230 1 519 1 chr7D.!!$R1 518
6 TraesCS1B01G087500 chr7D 515486705 515487227 522 False 566 566 86.2260 1 528 1 chr7D.!!$F1 527
7 TraesCS1B01G087500 chr2A 66767210 66767727 517 True 580 580 86.9230 1 519 1 chr2A.!!$R1 518
8 TraesCS1B01G087500 chr3D 15377188 15377714 526 False 568 568 86.1480 3 528 1 chr3D.!!$F1 525
9 TraesCS1B01G087500 chr1D 110975660 110976186 526 False 564 564 86.0380 1 528 1 chr1D.!!$F1 527
10 TraesCS1B01G087500 chr6D 20134565 20135094 529 False 551 551 85.4720 1 528 1 chr6D.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 316 0.034337 TTCCGCTGTACTGGTCCAAC 59.966 55.0 1.65 0.0 0.00 3.77 F
722 725 0.105964 AGGCGGCATATTAGCGTTCA 59.894 50.0 13.08 0.0 34.64 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1932 0.034896 AGACAAGGGTACAACTGGCG 59.965 55.0 0.00 0.0 0.00 5.69 R
2617 2641 0.032678 CTGGCGCTACACCTATCCAG 59.967 60.0 7.64 0.0 35.68 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.551504 GGGAGGGCTTCGTTTTTAGACA 60.552 50.000 0.00 0.00 0.00 3.41
63 65 9.673454 CTTCAACTTTTGTTAGGTTTGTATACC 57.327 33.333 0.00 0.00 41.35 2.73
81 83 1.587043 CCGCTCAGGAAGACGAGACA 61.587 60.000 0.00 0.00 45.00 3.41
89 91 3.569049 AAGACGAGACAACGGCGGG 62.569 63.158 13.24 5.43 46.71 6.13
128 130 4.752594 TTTCCCCGCCTAGCCCCT 62.753 66.667 0.00 0.00 0.00 4.79
135 138 2.443390 GCCTAGCCCCTGTACCGA 60.443 66.667 0.00 0.00 0.00 4.69
136 139 2.794028 GCCTAGCCCCTGTACCGAC 61.794 68.421 0.00 0.00 0.00 4.79
150 153 1.443872 CCGACGGTGTGTCTAGCAC 60.444 63.158 5.48 9.52 45.87 4.40
184 187 3.371063 GAGGCGTGTCTCCGGTGA 61.371 66.667 0.00 0.06 0.00 4.02
255 258 8.095169 ACGTTTGTATTTCTTCAGGTTAGATCT 58.905 33.333 0.00 0.00 0.00 2.75
297 300 1.155424 TCAGCGACGGTTGTTGTTCC 61.155 55.000 11.36 0.00 0.00 3.62
313 316 0.034337 TTCCGCTGTACTGGTCCAAC 59.966 55.000 1.65 0.00 0.00 3.77
328 331 1.740296 CAACGGGACCTTAGCACGG 60.740 63.158 0.00 0.00 0.00 4.94
337 340 0.389948 CCTTAGCACGGCGACTTTCT 60.390 55.000 16.62 5.16 0.00 2.52
367 370 1.679153 CTACAACAAGTTTTGCCCGGT 59.321 47.619 0.00 0.00 0.00 5.28
371 374 1.365999 CAAGTTTTGCCCGGTTCCC 59.634 57.895 0.00 0.00 0.00 3.97
427 430 2.408050 CTCGCTTCAGTGCTTGTAGTT 58.592 47.619 0.00 0.00 0.00 2.24
431 434 3.134458 GCTTCAGTGCTTGTAGTTGTCT 58.866 45.455 0.00 0.00 0.00 3.41
519 522 9.339492 GATTGAAGATGAACAGATTGAAAGTTC 57.661 33.333 0.00 0.00 41.42 3.01
520 523 7.206981 TGAAGATGAACAGATTGAAAGTTCC 57.793 36.000 0.00 0.00 40.58 3.62
521 524 7.000472 TGAAGATGAACAGATTGAAAGTTCCT 59.000 34.615 0.00 0.00 40.58 3.36
522 525 7.173907 TGAAGATGAACAGATTGAAAGTTCCTC 59.826 37.037 0.00 0.00 40.58 3.71
523 526 5.641209 AGATGAACAGATTGAAAGTTCCTCG 59.359 40.000 0.00 0.00 39.94 4.63
524 527 3.498397 TGAACAGATTGAAAGTTCCTCGC 59.502 43.478 0.00 0.00 40.58 5.03
525 528 3.126001 ACAGATTGAAAGTTCCTCGCA 57.874 42.857 0.00 0.00 0.00 5.10
526 529 3.476552 ACAGATTGAAAGTTCCTCGCAA 58.523 40.909 0.00 0.00 0.00 4.85
527 530 3.882888 ACAGATTGAAAGTTCCTCGCAAA 59.117 39.130 0.00 0.00 0.00 3.68
528 531 4.520492 ACAGATTGAAAGTTCCTCGCAAAT 59.480 37.500 0.00 0.00 0.00 2.32
529 532 5.705441 ACAGATTGAAAGTTCCTCGCAAATA 59.295 36.000 0.00 0.00 0.00 1.40
530 533 6.375455 ACAGATTGAAAGTTCCTCGCAAATAT 59.625 34.615 0.00 0.00 0.00 1.28
531 534 7.094205 ACAGATTGAAAGTTCCTCGCAAATATT 60.094 33.333 0.00 0.00 0.00 1.28
532 535 7.756722 CAGATTGAAAGTTCCTCGCAAATATTT 59.243 33.333 0.00 0.00 0.00 1.40
533 536 8.306761 AGATTGAAAGTTCCTCGCAAATATTTT 58.693 29.630 0.00 0.00 0.00 1.82
534 537 8.831715 ATTGAAAGTTCCTCGCAAATATTTTT 57.168 26.923 0.00 0.00 0.00 1.94
535 538 7.636259 TGAAAGTTCCTCGCAAATATTTTTG 57.364 32.000 0.00 4.44 44.18 2.44
536 539 7.429633 TGAAAGTTCCTCGCAAATATTTTTGA 58.570 30.769 12.18 0.00 44.11 2.69
537 540 7.594758 TGAAAGTTCCTCGCAAATATTTTTGAG 59.405 33.333 12.18 15.12 44.11 3.02
538 541 6.817765 AGTTCCTCGCAAATATTTTTGAGA 57.182 33.333 20.47 12.53 45.54 3.27
539 542 7.214467 AGTTCCTCGCAAATATTTTTGAGAA 57.786 32.000 20.47 13.11 46.47 2.87
540 543 7.657336 AGTTCCTCGCAAATATTTTTGAGAAA 58.343 30.769 20.47 9.75 46.47 2.52
541 544 8.141268 AGTTCCTCGCAAATATTTTTGAGAAAA 58.859 29.630 20.47 14.02 46.47 2.29
542 545 8.925700 GTTCCTCGCAAATATTTTTGAGAAAAT 58.074 29.630 20.47 3.05 46.47 1.82
544 547 9.567848 TCCTCGCAAATATTTTTGAGAAAATAC 57.432 29.630 20.47 0.00 46.47 1.89
545 548 9.352784 CCTCGCAAATATTTTTGAGAAAATACA 57.647 29.630 20.47 0.00 46.47 2.29
593 596 9.909644 ATTATACAGACGTCCTACAATAACATC 57.090 33.333 13.01 0.00 0.00 3.06
594 597 5.916661 ACAGACGTCCTACAATAACATCT 57.083 39.130 13.01 0.00 0.00 2.90
595 598 6.282199 ACAGACGTCCTACAATAACATCTT 57.718 37.500 13.01 0.00 0.00 2.40
596 599 6.698380 ACAGACGTCCTACAATAACATCTTT 58.302 36.000 13.01 0.00 0.00 2.52
597 600 7.833786 ACAGACGTCCTACAATAACATCTTTA 58.166 34.615 13.01 0.00 0.00 1.85
598 601 7.758528 ACAGACGTCCTACAATAACATCTTTAC 59.241 37.037 13.01 0.00 0.00 2.01
599 602 7.758076 CAGACGTCCTACAATAACATCTTTACA 59.242 37.037 13.01 0.00 0.00 2.41
600 603 8.475639 AGACGTCCTACAATAACATCTTTACAT 58.524 33.333 13.01 0.00 0.00 2.29
601 604 9.740239 GACGTCCTACAATAACATCTTTACATA 57.260 33.333 3.51 0.00 0.00 2.29
605 608 9.555727 TCCTACAATAACATCTTTACATAAGCC 57.444 33.333 0.00 0.00 0.00 4.35
606 609 9.337396 CCTACAATAACATCTTTACATAAGCCA 57.663 33.333 0.00 0.00 0.00 4.75
608 611 7.996385 ACAATAACATCTTTACATAAGCCACC 58.004 34.615 0.00 0.00 0.00 4.61
609 612 7.613801 ACAATAACATCTTTACATAAGCCACCA 59.386 33.333 0.00 0.00 0.00 4.17
610 613 8.465999 CAATAACATCTTTACATAAGCCACCAA 58.534 33.333 0.00 0.00 0.00 3.67
611 614 8.766994 ATAACATCTTTACATAAGCCACCAAT 57.233 30.769 0.00 0.00 0.00 3.16
612 615 6.699575 ACATCTTTACATAAGCCACCAATC 57.300 37.500 0.00 0.00 0.00 2.67
613 616 6.426587 ACATCTTTACATAAGCCACCAATCT 58.573 36.000 0.00 0.00 0.00 2.40
614 617 6.543831 ACATCTTTACATAAGCCACCAATCTC 59.456 38.462 0.00 0.00 0.00 2.75
615 618 5.437060 TCTTTACATAAGCCACCAATCTCC 58.563 41.667 0.00 0.00 0.00 3.71
616 619 5.191722 TCTTTACATAAGCCACCAATCTCCT 59.808 40.000 0.00 0.00 0.00 3.69
617 620 3.567478 ACATAAGCCACCAATCTCCTC 57.433 47.619 0.00 0.00 0.00 3.71
618 621 3.118531 ACATAAGCCACCAATCTCCTCT 58.881 45.455 0.00 0.00 0.00 3.69
619 622 4.298626 ACATAAGCCACCAATCTCCTCTA 58.701 43.478 0.00 0.00 0.00 2.43
620 623 4.721776 ACATAAGCCACCAATCTCCTCTAA 59.278 41.667 0.00 0.00 0.00 2.10
621 624 5.370880 ACATAAGCCACCAATCTCCTCTAAT 59.629 40.000 0.00 0.00 0.00 1.73
622 625 3.853355 AGCCACCAATCTCCTCTAATG 57.147 47.619 0.00 0.00 0.00 1.90
623 626 3.118531 AGCCACCAATCTCCTCTAATGT 58.881 45.455 0.00 0.00 0.00 2.71
624 627 4.298626 AGCCACCAATCTCCTCTAATGTA 58.701 43.478 0.00 0.00 0.00 2.29
625 628 4.101741 AGCCACCAATCTCCTCTAATGTAC 59.898 45.833 0.00 0.00 0.00 2.90
626 629 4.141711 GCCACCAATCTCCTCTAATGTACA 60.142 45.833 0.00 0.00 0.00 2.90
627 630 5.455326 GCCACCAATCTCCTCTAATGTACAT 60.455 44.000 1.41 1.41 0.00 2.29
628 631 6.595682 CCACCAATCTCCTCTAATGTACATT 58.404 40.000 23.80 23.80 34.93 2.71
629 632 6.708054 CCACCAATCTCCTCTAATGTACATTC 59.292 42.308 24.00 0.00 32.50 2.67
630 633 7.275183 CACCAATCTCCTCTAATGTACATTCA 58.725 38.462 24.00 11.50 32.50 2.57
631 634 7.770433 CACCAATCTCCTCTAATGTACATTCAA 59.230 37.037 24.00 12.54 32.50 2.69
632 635 7.770897 ACCAATCTCCTCTAATGTACATTCAAC 59.229 37.037 24.00 0.00 32.50 3.18
633 636 7.770433 CCAATCTCCTCTAATGTACATTCAACA 59.230 37.037 24.00 6.49 32.50 3.33
634 637 9.166173 CAATCTCCTCTAATGTACATTCAACAA 57.834 33.333 24.00 6.12 32.50 2.83
635 638 9.739276 AATCTCCTCTAATGTACATTCAACAAA 57.261 29.630 24.00 5.39 32.50 2.83
636 639 9.739276 ATCTCCTCTAATGTACATTCAACAAAA 57.261 29.630 24.00 4.67 32.50 2.44
637 640 8.999431 TCTCCTCTAATGTACATTCAACAAAAC 58.001 33.333 24.00 0.00 32.50 2.43
638 641 8.918202 TCCTCTAATGTACATTCAACAAAACT 57.082 30.769 24.00 0.00 32.50 2.66
654 657 8.227791 TCAACAAAACTAATAATCTTGTCTCGC 58.772 33.333 0.00 0.00 30.16 5.03
655 658 7.907214 ACAAAACTAATAATCTTGTCTCGCT 57.093 32.000 0.00 0.00 0.00 4.93
656 659 7.743104 ACAAAACTAATAATCTTGTCTCGCTG 58.257 34.615 0.00 0.00 0.00 5.18
657 660 6.910536 AAACTAATAATCTTGTCTCGCTGG 57.089 37.500 0.00 0.00 0.00 4.85
658 661 4.372656 ACTAATAATCTTGTCTCGCTGGC 58.627 43.478 0.00 0.00 0.00 4.85
659 662 1.858091 ATAATCTTGTCTCGCTGGCG 58.142 50.000 8.80 8.80 41.35 5.69
660 663 0.815095 TAATCTTGTCTCGCTGGCGA 59.185 50.000 16.68 16.68 46.87 5.54
672 675 3.645884 TCGCTGGCGAAGTTATTATACC 58.354 45.455 15.38 0.00 46.01 2.73
673 676 3.068448 TCGCTGGCGAAGTTATTATACCA 59.932 43.478 15.38 0.00 46.01 3.25
674 677 3.994392 CGCTGGCGAAGTTATTATACCAT 59.006 43.478 9.51 0.00 42.83 3.55
675 678 4.143115 CGCTGGCGAAGTTATTATACCATG 60.143 45.833 9.51 0.00 42.83 3.66
676 679 4.154195 GCTGGCGAAGTTATTATACCATGG 59.846 45.833 11.19 11.19 0.00 3.66
677 680 5.547465 CTGGCGAAGTTATTATACCATGGA 58.453 41.667 21.47 2.01 0.00 3.41
678 681 5.302360 TGGCGAAGTTATTATACCATGGAC 58.698 41.667 21.47 3.75 0.00 4.02
679 682 5.163290 TGGCGAAGTTATTATACCATGGACA 60.163 40.000 21.47 5.94 0.00 4.02
680 683 5.178809 GGCGAAGTTATTATACCATGGACAC 59.821 44.000 21.47 3.82 0.00 3.67
681 684 5.107607 GCGAAGTTATTATACCATGGACACG 60.108 44.000 21.47 14.10 0.00 4.49
682 685 5.981315 CGAAGTTATTATACCATGGACACGT 59.019 40.000 21.47 3.81 0.00 4.49
683 686 6.143438 CGAAGTTATTATACCATGGACACGTC 59.857 42.308 21.47 9.88 0.00 4.34
684 687 6.474140 AGTTATTATACCATGGACACGTCA 57.526 37.500 21.47 0.00 0.00 4.35
685 688 7.062749 AGTTATTATACCATGGACACGTCAT 57.937 36.000 21.47 3.42 0.00 3.06
686 689 7.506114 AGTTATTATACCATGGACACGTCATT 58.494 34.615 21.47 0.00 0.00 2.57
687 690 7.990886 AGTTATTATACCATGGACACGTCATTT 59.009 33.333 21.47 0.00 0.00 2.32
688 691 9.263538 GTTATTATACCATGGACACGTCATTTA 57.736 33.333 21.47 0.00 0.00 1.40
689 692 7.724305 ATTATACCATGGACACGTCATTTAC 57.276 36.000 21.47 0.00 0.00 2.01
690 693 3.695830 ACCATGGACACGTCATTTACT 57.304 42.857 21.47 0.00 0.00 2.24
691 694 3.334691 ACCATGGACACGTCATTTACTG 58.665 45.455 21.47 0.00 0.00 2.74
692 695 3.244422 ACCATGGACACGTCATTTACTGT 60.244 43.478 21.47 0.00 0.00 3.55
693 696 3.751175 CCATGGACACGTCATTTACTGTT 59.249 43.478 5.56 0.00 0.00 3.16
694 697 4.142902 CCATGGACACGTCATTTACTGTTC 60.143 45.833 5.56 0.00 0.00 3.18
695 698 4.061357 TGGACACGTCATTTACTGTTCA 57.939 40.909 0.00 0.00 0.00 3.18
696 699 4.637276 TGGACACGTCATTTACTGTTCAT 58.363 39.130 0.00 0.00 0.00 2.57
697 700 5.785243 TGGACACGTCATTTACTGTTCATA 58.215 37.500 0.00 0.00 0.00 2.15
698 701 6.224584 TGGACACGTCATTTACTGTTCATAA 58.775 36.000 0.00 0.00 0.00 1.90
699 702 6.876789 TGGACACGTCATTTACTGTTCATAAT 59.123 34.615 0.00 0.00 0.00 1.28
700 703 7.389330 TGGACACGTCATTTACTGTTCATAATT 59.611 33.333 0.00 0.00 0.00 1.40
701 704 8.234546 GGACACGTCATTTACTGTTCATAATTT 58.765 33.333 0.00 0.00 0.00 1.82
702 705 9.607285 GACACGTCATTTACTGTTCATAATTTT 57.393 29.630 0.00 0.00 0.00 1.82
706 709 9.221775 CGTCATTTACTGTTCATAATTTTAGGC 57.778 33.333 0.00 0.00 0.00 3.93
707 710 9.221775 GTCATTTACTGTTCATAATTTTAGGCG 57.778 33.333 0.00 0.00 0.00 5.52
708 711 8.402472 TCATTTACTGTTCATAATTTTAGGCGG 58.598 33.333 0.00 0.00 0.00 6.13
709 712 4.632538 ACTGTTCATAATTTTAGGCGGC 57.367 40.909 0.00 0.00 0.00 6.53
710 713 4.013728 ACTGTTCATAATTTTAGGCGGCA 58.986 39.130 13.08 0.00 0.00 5.69
711 714 4.644685 ACTGTTCATAATTTTAGGCGGCAT 59.355 37.500 13.08 0.00 0.00 4.40
712 715 5.825679 ACTGTTCATAATTTTAGGCGGCATA 59.174 36.000 13.08 0.00 0.00 3.14
713 716 6.490040 ACTGTTCATAATTTTAGGCGGCATAT 59.510 34.615 13.08 0.00 0.00 1.78
714 717 7.014230 ACTGTTCATAATTTTAGGCGGCATATT 59.986 33.333 13.08 7.37 0.00 1.28
715 718 8.397575 TGTTCATAATTTTAGGCGGCATATTA 57.602 30.769 13.08 9.33 0.00 0.98
716 719 8.511321 TGTTCATAATTTTAGGCGGCATATTAG 58.489 33.333 13.08 4.33 0.00 1.73
717 720 7.083875 TCATAATTTTAGGCGGCATATTAGC 57.916 36.000 13.08 0.00 0.00 3.09
718 721 4.419522 AATTTTAGGCGGCATATTAGCG 57.580 40.909 13.08 0.00 34.64 4.26
719 722 2.536761 TTTAGGCGGCATATTAGCGT 57.463 45.000 13.08 0.00 34.64 5.07
720 723 2.536761 TTAGGCGGCATATTAGCGTT 57.463 45.000 13.08 0.00 34.64 4.84
721 724 2.074547 TAGGCGGCATATTAGCGTTC 57.925 50.000 13.08 0.00 34.64 3.95
722 725 0.105964 AGGCGGCATATTAGCGTTCA 59.894 50.000 13.08 0.00 34.64 3.18
723 726 0.234884 GGCGGCATATTAGCGTTCAC 59.765 55.000 3.07 0.00 34.64 3.18
724 727 1.217882 GCGGCATATTAGCGTTCACT 58.782 50.000 0.00 0.00 34.64 3.41
725 728 2.400399 GCGGCATATTAGCGTTCACTA 58.600 47.619 0.00 0.00 34.64 2.74
726 729 2.408704 GCGGCATATTAGCGTTCACTAG 59.591 50.000 0.00 0.00 34.64 2.57
727 730 3.855895 GCGGCATATTAGCGTTCACTAGA 60.856 47.826 0.00 0.00 34.64 2.43
728 731 3.914966 CGGCATATTAGCGTTCACTAGAG 59.085 47.826 0.00 0.00 34.64 2.43
729 732 4.320275 CGGCATATTAGCGTTCACTAGAGA 60.320 45.833 0.00 0.00 34.64 3.10
730 733 5.529791 GGCATATTAGCGTTCACTAGAGAA 58.470 41.667 0.00 0.00 34.64 2.87
731 734 5.631512 GGCATATTAGCGTTCACTAGAGAAG 59.368 44.000 2.55 0.00 34.64 2.85
732 735 5.117897 GCATATTAGCGTTCACTAGAGAAGC 59.882 44.000 2.55 8.98 0.00 3.86
733 736 4.993029 ATTAGCGTTCACTAGAGAAGCT 57.007 40.909 21.05 21.05 36.58 3.74
734 737 2.931512 AGCGTTCACTAGAGAAGCTC 57.068 50.000 15.65 5.13 31.18 4.09
735 738 2.442413 AGCGTTCACTAGAGAAGCTCT 58.558 47.619 15.65 2.22 43.83 4.09
736 739 2.823154 AGCGTTCACTAGAGAAGCTCTT 59.177 45.455 15.65 0.00 41.50 2.85
737 740 2.920490 GCGTTCACTAGAGAAGCTCTTG 59.080 50.000 2.55 3.48 41.50 3.02
738 741 3.366476 GCGTTCACTAGAGAAGCTCTTGA 60.366 47.826 11.74 4.30 41.50 3.02
739 742 4.162812 CGTTCACTAGAGAAGCTCTTGAC 58.837 47.826 11.74 1.16 41.50 3.18
740 743 4.490743 GTTCACTAGAGAAGCTCTTGACC 58.509 47.826 11.74 0.00 41.50 4.02
741 744 3.767711 TCACTAGAGAAGCTCTTGACCA 58.232 45.455 11.74 0.00 41.50 4.02
742 745 4.152647 TCACTAGAGAAGCTCTTGACCAA 58.847 43.478 11.74 0.00 41.50 3.67
743 746 4.588951 TCACTAGAGAAGCTCTTGACCAAA 59.411 41.667 11.74 0.00 41.50 3.28
744 747 5.070446 TCACTAGAGAAGCTCTTGACCAAAA 59.930 40.000 11.74 0.00 41.50 2.44
745 748 5.760253 CACTAGAGAAGCTCTTGACCAAAAA 59.240 40.000 11.74 0.00 41.50 1.94
746 749 6.429385 CACTAGAGAAGCTCTTGACCAAAAAT 59.571 38.462 11.74 0.00 41.50 1.82
747 750 7.604164 CACTAGAGAAGCTCTTGACCAAAAATA 59.396 37.037 11.74 0.00 41.50 1.40
748 751 8.325046 ACTAGAGAAGCTCTTGACCAAAAATAT 58.675 33.333 11.74 0.00 41.50 1.28
749 752 7.388460 AGAGAAGCTCTTGACCAAAAATATG 57.612 36.000 0.00 0.00 37.60 1.78
750 753 5.958955 AGAAGCTCTTGACCAAAAATATGC 58.041 37.500 0.00 0.00 0.00 3.14
751 754 5.713861 AGAAGCTCTTGACCAAAAATATGCT 59.286 36.000 0.00 0.00 0.00 3.79
752 755 6.886459 AGAAGCTCTTGACCAAAAATATGCTA 59.114 34.615 0.00 0.00 0.00 3.49
753 756 6.442513 AGCTCTTGACCAAAAATATGCTAC 57.557 37.500 0.00 0.00 0.00 3.58
754 757 6.183347 AGCTCTTGACCAAAAATATGCTACT 58.817 36.000 0.00 0.00 0.00 2.57
755 758 6.094603 AGCTCTTGACCAAAAATATGCTACTG 59.905 38.462 0.00 0.00 0.00 2.74
756 759 6.127897 GCTCTTGACCAAAAATATGCTACTGT 60.128 38.462 0.00 0.00 0.00 3.55
757 760 7.575720 GCTCTTGACCAAAAATATGCTACTGTT 60.576 37.037 0.00 0.00 0.00 3.16
758 761 8.856153 TCTTGACCAAAAATATGCTACTGTTA 57.144 30.769 0.00 0.00 0.00 2.41
759 762 9.290988 TCTTGACCAAAAATATGCTACTGTTAA 57.709 29.630 0.00 0.00 0.00 2.01
760 763 9.341899 CTTGACCAAAAATATGCTACTGTTAAC 57.658 33.333 0.00 0.00 0.00 2.01
761 764 8.397575 TGACCAAAAATATGCTACTGTTAACA 57.602 30.769 8.28 8.28 0.00 2.41
762 765 8.851145 TGACCAAAAATATGCTACTGTTAACAA 58.149 29.630 10.03 0.00 0.00 2.83
763 766 9.124807 GACCAAAAATATGCTACTGTTAACAAC 57.875 33.333 10.03 0.58 0.00 3.32
764 767 8.634444 ACCAAAAATATGCTACTGTTAACAACA 58.366 29.630 10.03 6.28 39.52 3.33
765 768 9.638239 CCAAAAATATGCTACTGTTAACAACAT 57.362 29.630 10.03 12.55 41.26 2.71
773 776 8.172352 TGCTACTGTTAACAACATTATTTGGT 57.828 30.769 10.03 2.68 41.26 3.67
774 777 8.634444 TGCTACTGTTAACAACATTATTTGGTT 58.366 29.630 10.03 0.00 41.26 3.67
775 778 9.124807 GCTACTGTTAACAACATTATTTGGTTC 57.875 33.333 10.03 0.00 41.26 3.62
785 788 9.801873 ACAACATTATTTGGTTCATATAAGCAC 57.198 29.630 0.00 0.00 0.00 4.40
843 846 8.470040 TTTCGGTACACTAAGTCATAAATCAC 57.530 34.615 0.00 0.00 0.00 3.06
845 848 7.778083 TCGGTACACTAAGTCATAAATCACAT 58.222 34.615 0.00 0.00 0.00 3.21
847 850 8.965172 CGGTACACTAAGTCATAAATCACATAC 58.035 37.037 0.00 0.00 0.00 2.39
848 851 9.811995 GGTACACTAAGTCATAAATCACATACA 57.188 33.333 0.00 0.00 0.00 2.29
884 887 9.762933 ATTAATAAAAGCATGCCGTGATAAAAT 57.237 25.926 15.66 3.39 0.00 1.82
893 896 6.975772 GCATGCCGTGATAAAATTTTACCTTA 59.024 34.615 12.74 0.00 0.00 2.69
923 927 7.649533 TGAAATGGAATGAGTATTCAGCATT 57.350 32.000 0.00 0.00 43.62 3.56
995 999 8.624701 AAAATCGCATCAATCAGAAATTACTG 57.375 30.769 0.00 0.00 39.02 2.74
996 1000 5.160699 TCGCATCAATCAGAAATTACTGC 57.839 39.130 0.00 0.00 37.75 4.40
997 1001 4.035558 TCGCATCAATCAGAAATTACTGCC 59.964 41.667 0.00 0.00 37.75 4.85
998 1002 4.614946 GCATCAATCAGAAATTACTGCCC 58.385 43.478 0.00 0.00 37.75 5.36
1017 1023 1.202891 CCTATCCCCAAATTCCCGACC 60.203 57.143 0.00 0.00 0.00 4.79
1029 1035 2.001269 CCCGACCCCCTTCCATTCT 61.001 63.158 0.00 0.00 0.00 2.40
1036 1042 2.731571 CCCTTCCATTCTCGCGGGA 61.732 63.158 3.45 3.45 33.46 5.14
1080 1086 0.685097 GCCAAACTTTTTCCCCTCCC 59.315 55.000 0.00 0.00 0.00 4.30
1084 1090 1.848174 AACTTTTTCCCCTCCCCTCT 58.152 50.000 0.00 0.00 0.00 3.69
1086 1092 0.253327 CTTTTTCCCCTCCCCTCTCG 59.747 60.000 0.00 0.00 0.00 4.04
1087 1093 1.205460 TTTTTCCCCTCCCCTCTCGG 61.205 60.000 0.00 0.00 0.00 4.63
1109 1115 1.750399 CTCCCCACCGCAAATCCAG 60.750 63.158 0.00 0.00 0.00 3.86
1110 1116 2.755469 CCCCACCGCAAATCCAGG 60.755 66.667 0.00 0.00 0.00 4.45
1129 1135 1.899142 GGCCAAACCTAGCATTCCAAA 59.101 47.619 0.00 0.00 34.51 3.28
1136 1142 1.867233 CCTAGCATTCCAAACCGATCG 59.133 52.381 8.51 8.51 0.00 3.69
1224 1230 2.583441 CCGTCACCCAAGAGCAGGA 61.583 63.158 0.00 0.00 0.00 3.86
1262 1268 1.876664 GGAGCGCAAAAGGAAGGTC 59.123 57.895 11.47 0.00 0.00 3.85
1271 1277 4.514577 AGGAAGGTCGCGCCATCG 62.515 66.667 19.30 0.00 40.61 3.84
1295 1301 1.069432 GGTCCGCCGAAGAAAAAGAAC 60.069 52.381 0.00 0.00 0.00 3.01
1334 1346 2.264794 GCCGAGCCCGAGAAGAAA 59.735 61.111 0.00 0.00 38.22 2.52
1335 1347 2.101233 GCCGAGCCCGAGAAGAAAC 61.101 63.158 0.00 0.00 38.22 2.78
1336 1348 1.448013 CCGAGCCCGAGAAGAAACC 60.448 63.158 0.00 0.00 38.22 3.27
1337 1349 1.592223 CGAGCCCGAGAAGAAACCT 59.408 57.895 0.00 0.00 38.22 3.50
1338 1350 0.458716 CGAGCCCGAGAAGAAACCTC 60.459 60.000 0.00 0.00 38.22 3.85
1339 1351 0.899019 GAGCCCGAGAAGAAACCTCT 59.101 55.000 0.00 0.00 0.00 3.69
1346 1358 2.416701 CGAGAAGAAACCTCTGCCTCTC 60.417 54.545 0.00 0.00 32.84 3.20
1364 1376 2.427245 CCCTCTCCCGTTCGAGCAT 61.427 63.158 0.00 0.00 0.00 3.79
1368 1380 4.467084 TCCCGTTCGAGCATGCCC 62.467 66.667 15.66 0.00 0.00 5.36
1510 1522 3.344215 CGCGCCATCAGCAGATCC 61.344 66.667 0.00 0.00 44.04 3.36
1525 1537 0.541863 GATCCGCCCCAGAAGAAAGA 59.458 55.000 0.00 0.00 0.00 2.52
1527 1539 1.741770 CCGCCCCAGAAGAAAGACG 60.742 63.158 0.00 0.00 0.00 4.18
1688 1706 0.325110 TGCTCTTCTCCTCCCTCCAG 60.325 60.000 0.00 0.00 0.00 3.86
1691 1709 0.325110 TCTTCTCCTCCCTCCAGCTG 60.325 60.000 6.78 6.78 0.00 4.24
1712 1730 1.507141 AAGGCCGCTTCGACAACAAG 61.507 55.000 0.00 0.00 0.00 3.16
1786 1804 2.819595 CCACGAGGCCATCAACGG 60.820 66.667 5.01 0.00 0.00 4.44
1804 1822 2.037871 GCGTCCCTGCCAAAGAAAA 58.962 52.632 0.00 0.00 0.00 2.29
1808 1826 2.095059 CGTCCCTGCCAAAGAAAATGAG 60.095 50.000 0.00 0.00 0.00 2.90
1836 1854 1.461268 TGCCACCTCTCCAAGACCA 60.461 57.895 0.00 0.00 0.00 4.02
1855 1873 5.333199 ACCATCTGGGGCACTATTGCTAC 62.333 52.174 4.95 0.00 42.99 3.58
1883 1901 0.848305 GTGAAGCAAGCGCAAAAGTG 59.152 50.000 11.47 0.00 42.27 3.16
1901 1919 3.283684 CCAAACGCGGGCAAGACA 61.284 61.111 12.47 0.00 0.00 3.41
1914 1932 3.111098 GGCAAGACATTCGATGAAATGC 58.889 45.455 0.00 0.00 39.72 3.56
1925 1943 2.785679 GATGAAATGCGCCAGTTGTAC 58.214 47.619 4.18 0.00 0.00 2.90
1931 1949 1.599797 GCGCCAGTTGTACCCTTGT 60.600 57.895 0.00 0.00 0.00 3.16
1937 1955 2.104111 CCAGTTGTACCCTTGTCTCACA 59.896 50.000 0.00 0.00 0.00 3.58
2002 2020 3.326006 AGACTGCTCTTGGACTTTGATGA 59.674 43.478 0.00 0.00 0.00 2.92
2078 2096 2.492088 CGAGGCTATCATGGAATCGGTA 59.508 50.000 0.00 0.00 0.00 4.02
2135 2153 5.567138 ATTAATAACTGTGGCAGCAAGTC 57.433 39.130 0.00 0.00 34.37 3.01
2177 2200 5.473504 AGATGCACCTTTAACTTCAACGAAT 59.526 36.000 0.00 0.00 0.00 3.34
2251 2274 1.352083 TCTCCTGCCTGCAGTTTACT 58.648 50.000 17.23 0.00 42.15 2.24
2261 2284 4.624125 GCCTGCAGTTTACTCTACTTCCAT 60.624 45.833 13.81 0.00 0.00 3.41
2262 2285 4.872691 CCTGCAGTTTACTCTACTTCCATG 59.127 45.833 13.81 0.00 0.00 3.66
2280 2303 7.331687 ACTTCCATGTTCTTGAAAAACAACTTG 59.668 33.333 0.00 0.00 39.84 3.16
2289 2312 3.761218 TGAAAAACAACTTGCAGACCTCA 59.239 39.130 0.00 0.00 0.00 3.86
2442 2465 7.440255 TGGTAAAAGTACTGACTTGTTAGAAGC 59.560 37.037 0.00 0.00 45.50 3.86
2444 2467 8.989980 GTAAAAGTACTGACTTGTTAGAAGCAT 58.010 33.333 0.00 0.00 45.50 3.79
2537 2561 5.411361 TGTCGCTAATATTGCAAAGTGAGTT 59.589 36.000 11.42 0.88 0.00 3.01
2543 2567 8.450964 GCTAATATTGCAAAGTGAGTTGAACTA 58.549 33.333 1.71 0.00 0.00 2.24
2546 2570 6.942532 ATTGCAAAGTGAGTTGAACTAAGA 57.057 33.333 1.71 0.00 0.00 2.10
2547 2571 6.942532 TTGCAAAGTGAGTTGAACTAAGAT 57.057 33.333 0.00 0.00 0.00 2.40
2548 2572 6.304356 TGCAAAGTGAGTTGAACTAAGATG 57.696 37.500 0.00 0.00 0.00 2.90
2549 2573 5.149977 GCAAAGTGAGTTGAACTAAGATGC 58.850 41.667 0.00 2.52 0.00 3.91
2550 2574 5.049129 GCAAAGTGAGTTGAACTAAGATGCT 60.049 40.000 0.00 0.00 0.00 3.79
2551 2575 6.514048 GCAAAGTGAGTTGAACTAAGATGCTT 60.514 38.462 0.00 0.00 0.00 3.91
2552 2576 6.551385 AAGTGAGTTGAACTAAGATGCTTG 57.449 37.500 0.00 0.00 0.00 4.01
2553 2577 5.615289 AGTGAGTTGAACTAAGATGCTTGT 58.385 37.500 0.00 0.00 0.00 3.16
2554 2578 5.468072 AGTGAGTTGAACTAAGATGCTTGTG 59.532 40.000 0.00 0.00 0.00 3.33
2555 2579 4.756642 TGAGTTGAACTAAGATGCTTGTGG 59.243 41.667 0.00 0.00 0.00 4.17
2556 2580 4.973168 AGTTGAACTAAGATGCTTGTGGA 58.027 39.130 0.00 0.00 0.00 4.02
2557 2581 4.757149 AGTTGAACTAAGATGCTTGTGGAC 59.243 41.667 0.00 0.00 0.00 4.02
2558 2582 3.674997 TGAACTAAGATGCTTGTGGACC 58.325 45.455 0.00 0.00 0.00 4.46
2559 2583 3.072330 TGAACTAAGATGCTTGTGGACCA 59.928 43.478 0.00 0.00 0.00 4.02
2560 2584 3.340814 ACTAAGATGCTTGTGGACCAG 57.659 47.619 0.00 0.00 0.00 4.00
2561 2585 2.639839 ACTAAGATGCTTGTGGACCAGT 59.360 45.455 0.00 0.00 0.00 4.00
2562 2586 2.664402 AAGATGCTTGTGGACCAGTT 57.336 45.000 0.00 0.00 0.00 3.16
2563 2587 2.664402 AGATGCTTGTGGACCAGTTT 57.336 45.000 0.00 0.00 0.00 2.66
2564 2588 2.233271 AGATGCTTGTGGACCAGTTTG 58.767 47.619 0.00 0.00 0.00 2.93
2565 2589 1.270550 GATGCTTGTGGACCAGTTTGG 59.729 52.381 0.00 0.00 45.02 3.28
2566 2590 1.363807 GCTTGTGGACCAGTTTGGC 59.636 57.895 0.00 0.00 42.67 4.52
2567 2591 1.109323 GCTTGTGGACCAGTTTGGCT 61.109 55.000 0.00 0.00 42.67 4.75
2568 2592 0.670162 CTTGTGGACCAGTTTGGCTG 59.330 55.000 0.00 0.00 42.67 4.85
2569 2593 1.391157 TTGTGGACCAGTTTGGCTGC 61.391 55.000 0.00 0.00 42.67 5.25
2570 2594 2.594303 TGGACCAGTTTGGCTGCG 60.594 61.111 0.00 0.00 42.67 5.18
2571 2595 2.281484 GGACCAGTTTGGCTGCGA 60.281 61.111 0.00 0.00 42.67 5.10
2572 2596 1.675641 GGACCAGTTTGGCTGCGAT 60.676 57.895 0.00 0.00 42.67 4.58
2573 2597 1.503542 GACCAGTTTGGCTGCGATG 59.496 57.895 0.00 0.00 42.67 3.84
2574 2598 1.228245 ACCAGTTTGGCTGCGATGT 60.228 52.632 0.00 0.00 42.67 3.06
2575 2599 1.237285 ACCAGTTTGGCTGCGATGTC 61.237 55.000 0.00 0.00 42.67 3.06
2576 2600 0.957395 CCAGTTTGGCTGCGATGTCT 60.957 55.000 0.00 0.00 43.71 3.41
2577 2601 0.167470 CAGTTTGGCTGCGATGTCTG 59.833 55.000 0.00 0.00 38.52 3.51
2578 2602 0.250467 AGTTTGGCTGCGATGTCTGT 60.250 50.000 0.00 0.00 0.00 3.41
2579 2603 0.593128 GTTTGGCTGCGATGTCTGTT 59.407 50.000 0.00 0.00 0.00 3.16
2580 2604 1.001378 GTTTGGCTGCGATGTCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
2581 2605 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
2582 2606 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
2583 2607 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
2584 2608 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
2585 2609 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
2586 2610 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
2587 2611 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
2588 2612 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
2589 2613 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
2590 2614 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
2591 2615 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
2592 2616 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
2593 2617 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
2594 2618 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
2595 2619 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
2596 2620 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
2597 2621 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
2598 2622 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
2599 2623 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
2600 2624 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
2601 2625 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
2602 2626 2.237392 GGTATTAGGCCCAGGCTATCTG 59.763 54.545 8.89 0.00 40.30 2.90
2603 2627 0.695347 ATTAGGCCCAGGCTATCTGC 59.305 55.000 8.89 0.00 40.30 4.26
2604 2628 1.758440 TTAGGCCCAGGCTATCTGCG 61.758 60.000 8.89 0.00 40.30 5.18
2611 2635 2.281139 GGCTATCTGCGCCCCTTC 60.281 66.667 4.18 0.00 44.05 3.46
2612 2636 2.505982 GCTATCTGCGCCCCTTCA 59.494 61.111 4.18 0.00 0.00 3.02
2613 2637 1.072159 GCTATCTGCGCCCCTTCAT 59.928 57.895 4.18 0.00 0.00 2.57
2614 2638 0.952984 GCTATCTGCGCCCCTTCATC 60.953 60.000 4.18 0.00 0.00 2.92
2615 2639 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
2616 2640 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
2617 2641 0.749454 ATCTGCGCCCCTTCATCAAC 60.749 55.000 4.18 0.00 0.00 3.18
2618 2642 1.377725 CTGCGCCCCTTCATCAACT 60.378 57.895 4.18 0.00 0.00 3.16
2619 2643 1.651240 CTGCGCCCCTTCATCAACTG 61.651 60.000 4.18 0.00 0.00 3.16
2620 2644 2.409870 GCGCCCCTTCATCAACTGG 61.410 63.158 0.00 0.00 0.00 4.00
2621 2645 1.299648 CGCCCCTTCATCAACTGGA 59.700 57.895 0.00 0.00 0.00 3.86
2622 2646 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.000 0.00 0.00 36.39 3.41
2623 2647 1.140852 CGCCCCTTCATCAACTGGATA 59.859 52.381 0.00 0.00 33.95 2.59
2624 2648 2.808202 CGCCCCTTCATCAACTGGATAG 60.808 54.545 0.00 0.00 33.95 2.08
2625 2649 2.487986 GCCCCTTCATCAACTGGATAGG 60.488 54.545 0.00 0.00 33.95 2.57
2626 2650 2.780010 CCCCTTCATCAACTGGATAGGT 59.220 50.000 0.00 0.00 32.05 3.08
2627 2651 3.434167 CCCCTTCATCAACTGGATAGGTG 60.434 52.174 0.00 0.00 43.21 4.00
2628 2652 3.200825 CCCTTCATCAACTGGATAGGTGT 59.799 47.826 0.00 0.00 42.42 4.16
2629 2653 4.408921 CCCTTCATCAACTGGATAGGTGTA 59.591 45.833 0.00 0.00 42.42 2.90
2630 2654 5.453903 CCCTTCATCAACTGGATAGGTGTAG 60.454 48.000 0.00 0.00 42.42 2.74
2631 2655 4.672587 TCATCAACTGGATAGGTGTAGC 57.327 45.455 0.00 0.00 42.42 3.58
2632 2656 3.068165 TCATCAACTGGATAGGTGTAGCG 59.932 47.826 0.00 0.00 42.42 4.26
2633 2657 1.136305 TCAACTGGATAGGTGTAGCGC 59.864 52.381 0.00 0.00 42.42 5.92
2634 2658 0.464452 AACTGGATAGGTGTAGCGCC 59.536 55.000 2.29 0.00 0.00 6.53
2635 2659 0.686441 ACTGGATAGGTGTAGCGCCA 60.686 55.000 2.29 0.00 36.32 5.69
2636 2660 0.032678 CTGGATAGGTGTAGCGCCAG 59.967 60.000 2.29 0.00 36.32 4.85
2637 2661 0.686441 TGGATAGGTGTAGCGCCAGT 60.686 55.000 2.29 0.00 36.32 4.00
2638 2662 0.464452 GGATAGGTGTAGCGCCAGTT 59.536 55.000 2.29 0.00 36.32 3.16
2639 2663 1.134491 GGATAGGTGTAGCGCCAGTTT 60.134 52.381 2.29 0.00 36.32 2.66
2640 2664 1.933853 GATAGGTGTAGCGCCAGTTTG 59.066 52.381 2.29 0.00 36.32 2.93
2641 2665 0.682852 TAGGTGTAGCGCCAGTTTGT 59.317 50.000 2.29 0.00 36.32 2.83
2642 2666 0.179029 AGGTGTAGCGCCAGTTTGTT 60.179 50.000 2.29 0.00 36.32 2.83
2643 2667 0.040425 GGTGTAGCGCCAGTTTGTTG 60.040 55.000 2.29 0.00 33.65 3.33
2644 2668 0.660300 GTGTAGCGCCAGTTTGTTGC 60.660 55.000 2.29 0.00 0.00 4.17
2645 2669 0.817634 TGTAGCGCCAGTTTGTTGCT 60.818 50.000 2.29 0.00 39.59 3.91
2646 2670 0.310854 GTAGCGCCAGTTTGTTGCTT 59.689 50.000 2.29 0.00 37.12 3.91
2647 2671 1.533731 GTAGCGCCAGTTTGTTGCTTA 59.466 47.619 2.29 0.00 37.12 3.09
2648 2672 0.593128 AGCGCCAGTTTGTTGCTTAG 59.407 50.000 2.29 0.00 30.27 2.18
2649 2673 0.591170 GCGCCAGTTTGTTGCTTAGA 59.409 50.000 0.00 0.00 0.00 2.10
2650 2674 1.663161 GCGCCAGTTTGTTGCTTAGAC 60.663 52.381 0.00 0.00 0.00 2.59
2651 2675 1.398451 CGCCAGTTTGTTGCTTAGACG 60.398 52.381 0.00 0.00 0.00 4.18
2652 2676 1.069227 GCCAGTTTGTTGCTTAGACGG 60.069 52.381 0.00 0.00 0.00 4.79
2653 2677 1.069227 CCAGTTTGTTGCTTAGACGGC 60.069 52.381 0.00 0.00 0.00 5.68
2654 2678 0.865769 AGTTTGTTGCTTAGACGGCG 59.134 50.000 4.80 4.80 0.00 6.46
2655 2679 0.110373 GTTTGTTGCTTAGACGGCGG 60.110 55.000 13.24 0.00 0.00 6.13
2656 2680 1.847890 TTTGTTGCTTAGACGGCGGC 61.848 55.000 13.24 8.92 0.00 6.53
2657 2681 2.434359 GTTGCTTAGACGGCGGCT 60.434 61.111 23.30 23.30 0.00 5.52
2658 2682 2.033194 GTTGCTTAGACGGCGGCTT 61.033 57.895 25.39 5.00 0.00 4.35
2659 2683 1.302192 TTGCTTAGACGGCGGCTTT 60.302 52.632 25.39 0.00 0.00 3.51
2660 2684 1.573829 TTGCTTAGACGGCGGCTTTG 61.574 55.000 25.39 15.88 0.00 2.77
2661 2685 2.750888 GCTTAGACGGCGGCTTTGG 61.751 63.158 25.39 12.95 0.00 3.28
2662 2686 1.375523 CTTAGACGGCGGCTTTGGT 60.376 57.895 25.39 0.00 0.00 3.67
2663 2687 1.359459 CTTAGACGGCGGCTTTGGTC 61.359 60.000 25.39 0.85 0.00 4.02
2664 2688 1.823169 TTAGACGGCGGCTTTGGTCT 61.823 55.000 25.39 18.41 42.10 3.85
2665 2689 1.823169 TAGACGGCGGCTTTGGTCTT 61.823 55.000 25.39 0.00 40.10 3.01
2666 2690 1.375013 GACGGCGGCTTTGGTCTTA 60.375 57.895 13.24 0.00 0.00 2.10
2667 2691 1.632948 GACGGCGGCTTTGGTCTTAC 61.633 60.000 13.24 0.00 0.00 2.34
2668 2692 1.375523 CGGCGGCTTTGGTCTTACT 60.376 57.895 7.61 0.00 0.00 2.24
2669 2693 1.635663 CGGCGGCTTTGGTCTTACTG 61.636 60.000 7.61 0.00 0.00 2.74
2670 2694 0.605589 GGCGGCTTTGGTCTTACTGT 60.606 55.000 0.00 0.00 0.00 3.55
2671 2695 0.517316 GCGGCTTTGGTCTTACTGTG 59.483 55.000 0.00 0.00 0.00 3.66
2672 2696 1.156736 CGGCTTTGGTCTTACTGTGG 58.843 55.000 0.00 0.00 0.00 4.17
2673 2697 1.542547 CGGCTTTGGTCTTACTGTGGT 60.543 52.381 0.00 0.00 0.00 4.16
2674 2698 2.289195 CGGCTTTGGTCTTACTGTGGTA 60.289 50.000 0.00 0.00 0.00 3.25
2675 2699 3.618997 CGGCTTTGGTCTTACTGTGGTAT 60.619 47.826 0.00 0.00 0.00 2.73
2676 2700 4.332828 GGCTTTGGTCTTACTGTGGTATT 58.667 43.478 0.00 0.00 0.00 1.89
2677 2701 5.493809 GGCTTTGGTCTTACTGTGGTATTA 58.506 41.667 0.00 0.00 0.00 0.98
2678 2702 5.353400 GGCTTTGGTCTTACTGTGGTATTAC 59.647 44.000 0.00 0.00 0.00 1.89
2679 2703 6.171213 GCTTTGGTCTTACTGTGGTATTACT 58.829 40.000 0.00 0.00 0.00 2.24
2680 2704 6.653740 GCTTTGGTCTTACTGTGGTATTACTT 59.346 38.462 0.00 0.00 0.00 2.24
2681 2705 7.174426 GCTTTGGTCTTACTGTGGTATTACTTT 59.826 37.037 0.00 0.00 0.00 2.66
2682 2706 7.972832 TTGGTCTTACTGTGGTATTACTTTG 57.027 36.000 0.00 0.00 0.00 2.77
2683 2707 7.069877 TGGTCTTACTGTGGTATTACTTTGT 57.930 36.000 0.00 0.00 0.00 2.83
2684 2708 8.192743 TGGTCTTACTGTGGTATTACTTTGTA 57.807 34.615 0.00 0.00 0.00 2.41
2685 2709 8.649591 TGGTCTTACTGTGGTATTACTTTGTAA 58.350 33.333 0.00 0.00 0.00 2.41
2686 2710 9.148104 GGTCTTACTGTGGTATTACTTTGTAAG 57.852 37.037 15.15 15.15 37.81 2.34
2687 2711 9.148104 GTCTTACTGTGGTATTACTTTGTAAGG 57.852 37.037 17.94 0.00 37.36 2.69
2688 2712 8.873144 TCTTACTGTGGTATTACTTTGTAAGGT 58.127 33.333 17.94 0.00 37.36 3.50
2689 2713 9.498176 CTTACTGTGGTATTACTTTGTAAGGTT 57.502 33.333 0.00 0.00 34.82 3.50
2690 2714 9.850198 TTACTGTGGTATTACTTTGTAAGGTTT 57.150 29.630 0.00 0.00 0.00 3.27
2691 2715 8.756486 ACTGTGGTATTACTTTGTAAGGTTTT 57.244 30.769 0.00 0.00 0.00 2.43
2692 2716 8.626526 ACTGTGGTATTACTTTGTAAGGTTTTG 58.373 33.333 0.00 0.00 0.00 2.44
2693 2717 8.522542 TGTGGTATTACTTTGTAAGGTTTTGT 57.477 30.769 0.00 0.00 0.00 2.83
2694 2718 8.407064 TGTGGTATTACTTTGTAAGGTTTTGTG 58.593 33.333 0.00 0.00 0.00 3.33
2695 2719 8.623030 GTGGTATTACTTTGTAAGGTTTTGTGA 58.377 33.333 0.00 0.00 0.00 3.58
2696 2720 8.842280 TGGTATTACTTTGTAAGGTTTTGTGAG 58.158 33.333 0.00 0.00 0.00 3.51
2697 2721 9.059260 GGTATTACTTTGTAAGGTTTTGTGAGA 57.941 33.333 0.00 0.00 0.00 3.27
2716 2740 7.925993 TGTGAGAATAATTAATAAAGTGGCCG 58.074 34.615 0.00 0.00 0.00 6.13
2717 2741 7.554835 TGTGAGAATAATTAATAAAGTGGCCGT 59.445 33.333 0.00 0.00 0.00 5.68
2718 2742 9.048446 GTGAGAATAATTAATAAAGTGGCCGTA 57.952 33.333 0.00 0.00 0.00 4.02
2719 2743 9.787435 TGAGAATAATTAATAAAGTGGCCGTAT 57.213 29.630 0.00 0.00 0.00 3.06
2721 2745 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
2722 2746 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
2723 2747 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
2724 2748 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
2725 2749 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
2726 2750 1.714899 AAAGTGGCCGTATGCATCGC 61.715 55.000 0.19 3.34 43.89 4.58
2727 2751 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
2728 2752 4.927782 TGGCCGTATGCATCGCCC 62.928 66.667 22.75 16.75 43.89 6.13
2729 2753 4.927782 GGCCGTATGCATCGCCCA 62.928 66.667 17.54 0.00 43.89 5.36
2730 2754 3.349006 GCCGTATGCATCGCCCAG 61.349 66.667 0.19 0.00 40.77 4.45
2731 2755 2.421314 CCGTATGCATCGCCCAGA 59.579 61.111 0.19 0.00 0.00 3.86
2732 2756 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90
2739 2763 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
2740 2764 3.472943 ATCGCCCAGATGCAGAGGC 62.473 63.158 8.59 8.59 42.18 4.70
2743 2767 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
2744 2768 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
2745 2769 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2751 2775 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
2764 2788 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
2765 2789 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
2766 2790 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
2800 2824 4.164981 TGTAGACCAGTTTCAGGGTACAT 58.835 43.478 0.00 0.00 37.57 2.29
2811 2835 8.871125 CAGTTTCAGGGTACATCTAGGTTATAT 58.129 37.037 0.00 0.00 0.00 0.86
2819 2843 9.379791 GGGTACATCTAGGTTATATTTGTATGC 57.620 37.037 0.00 0.00 0.00 3.14
2834 2858 2.311542 TGTATGCCATCTCCTTGGGTTT 59.688 45.455 0.00 0.00 37.24 3.27
2837 2861 1.358787 TGCCATCTCCTTGGGTTTGAT 59.641 47.619 0.00 0.00 37.24 2.57
2920 2944 7.169140 GGACAGTAAGTTACCTTGCAAATTTTG 59.831 37.037 9.46 4.72 35.92 2.44
2927 2951 7.053498 AGTTACCTTGCAAATTTTGACCAATT 58.947 30.769 13.26 2.45 0.00 2.32
2945 2969 4.998672 CCAATTGTGATGTTGAATTTGGCT 59.001 37.500 4.43 0.00 0.00 4.75
3021 3047 1.400846 CATGCACTAAGCTTCAGCCAG 59.599 52.381 0.00 0.00 45.94 4.85
3038 3064 2.146342 CCAGCAAAGTCGAGAACACAT 58.854 47.619 0.00 0.00 0.00 3.21
3057 3083 8.761575 AACACATAATGAAAGCATACTTTTGG 57.238 30.769 0.00 0.00 46.20 3.28
3058 3084 7.895759 ACACATAATGAAAGCATACTTTTGGT 58.104 30.769 0.00 0.00 46.20 3.67
3097 3123 2.185310 GAGGGTGCGGGTGTTGAGAT 62.185 60.000 0.00 0.00 0.00 2.75
3119 3145 4.184079 GCAGGAGCAATTGAACAGAATT 57.816 40.909 10.34 0.00 41.58 2.17
3120 3146 5.314923 GCAGGAGCAATTGAACAGAATTA 57.685 39.130 10.34 0.00 41.58 1.40
3124 3150 7.373493 CAGGAGCAATTGAACAGAATTAAACT 58.627 34.615 10.34 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 0.241213 TTGTCTCGTCTTCCTGAGCG 59.759 55.000 0.00 0.00 32.20 5.03
81 83 4.016706 CTTCAGGGACCCGCCGTT 62.017 66.667 4.40 0.00 37.63 4.44
89 91 7.363007 GGAAAACCTTATTTCATCTTCAGGGAC 60.363 40.741 2.63 0.00 40.34 4.46
171 174 2.287668 GGATAGATTCACCGGAGACACG 60.288 54.545 9.46 0.00 0.00 4.49
255 258 8.242729 TGATGAAGAGTAGCATAGATCAGAAA 57.757 34.615 0.00 0.00 0.00 2.52
297 300 1.736645 CCGTTGGACCAGTACAGCG 60.737 63.158 11.81 11.81 45.84 5.18
328 331 3.562567 AGTAGACAGTCAGAAAGTCGC 57.437 47.619 2.66 0.00 37.36 5.19
337 340 6.036735 GCAAAACTTGTTGTAGTAGACAGTCA 59.963 38.462 2.66 0.00 39.88 3.41
472 475 5.102020 TCATGACAATACAACAAACACCG 57.898 39.130 0.00 0.00 0.00 4.94
479 482 8.564509 TCATCTTCAATCATGACAATACAACA 57.435 30.769 0.00 0.00 34.61 3.33
519 522 9.352784 TGTATTTTCTCAAAAATATTTGCGAGG 57.647 29.630 19.50 7.94 44.81 4.63
567 570 9.909644 GATGTTATTGTAGGACGTCTGTATAAT 57.090 33.333 16.46 17.27 0.00 1.28
568 571 9.128404 AGATGTTATTGTAGGACGTCTGTATAA 57.872 33.333 16.46 11.91 38.03 0.98
569 572 8.687292 AGATGTTATTGTAGGACGTCTGTATA 57.313 34.615 16.46 3.31 38.03 1.47
570 573 7.584122 AGATGTTATTGTAGGACGTCTGTAT 57.416 36.000 16.46 5.16 38.03 2.29
571 574 7.400599 AAGATGTTATTGTAGGACGTCTGTA 57.599 36.000 16.46 4.79 39.06 2.74
572 575 5.916661 AGATGTTATTGTAGGACGTCTGT 57.083 39.130 16.46 5.85 38.03 3.41
573 576 7.758076 TGTAAAGATGTTATTGTAGGACGTCTG 59.242 37.037 16.46 0.00 39.06 3.51
574 577 7.833786 TGTAAAGATGTTATTGTAGGACGTCT 58.166 34.615 16.46 4.12 40.39 4.18
575 578 8.644318 ATGTAAAGATGTTATTGTAGGACGTC 57.356 34.615 7.13 7.13 0.00 4.34
579 582 9.555727 GGCTTATGTAAAGATGTTATTGTAGGA 57.444 33.333 0.00 0.00 0.00 2.94
580 583 9.337396 TGGCTTATGTAAAGATGTTATTGTAGG 57.663 33.333 0.00 0.00 0.00 3.18
582 585 9.116067 GGTGGCTTATGTAAAGATGTTATTGTA 57.884 33.333 0.00 0.00 0.00 2.41
583 586 7.613801 TGGTGGCTTATGTAAAGATGTTATTGT 59.386 33.333 0.00 0.00 0.00 2.71
584 587 7.995289 TGGTGGCTTATGTAAAGATGTTATTG 58.005 34.615 0.00 0.00 0.00 1.90
585 588 8.588290 TTGGTGGCTTATGTAAAGATGTTATT 57.412 30.769 0.00 0.00 0.00 1.40
586 589 8.766994 ATTGGTGGCTTATGTAAAGATGTTAT 57.233 30.769 0.00 0.00 0.00 1.89
587 590 8.052748 AGATTGGTGGCTTATGTAAAGATGTTA 58.947 33.333 0.00 0.00 0.00 2.41
588 591 6.891908 AGATTGGTGGCTTATGTAAAGATGTT 59.108 34.615 0.00 0.00 0.00 2.71
589 592 6.426587 AGATTGGTGGCTTATGTAAAGATGT 58.573 36.000 0.00 0.00 0.00 3.06
590 593 6.016777 GGAGATTGGTGGCTTATGTAAAGATG 60.017 42.308 0.00 0.00 0.00 2.90
591 594 6.064717 GGAGATTGGTGGCTTATGTAAAGAT 58.935 40.000 0.00 0.00 0.00 2.40
592 595 5.191722 AGGAGATTGGTGGCTTATGTAAAGA 59.808 40.000 0.00 0.00 0.00 2.52
593 596 5.440610 AGGAGATTGGTGGCTTATGTAAAG 58.559 41.667 0.00 0.00 0.00 1.85
594 597 5.191722 AGAGGAGATTGGTGGCTTATGTAAA 59.808 40.000 0.00 0.00 0.00 2.01
595 598 4.721776 AGAGGAGATTGGTGGCTTATGTAA 59.278 41.667 0.00 0.00 0.00 2.41
596 599 4.298626 AGAGGAGATTGGTGGCTTATGTA 58.701 43.478 0.00 0.00 0.00 2.29
597 600 3.118531 AGAGGAGATTGGTGGCTTATGT 58.881 45.455 0.00 0.00 0.00 2.29
598 601 3.853355 AGAGGAGATTGGTGGCTTATG 57.147 47.619 0.00 0.00 0.00 1.90
599 602 5.370880 ACATTAGAGGAGATTGGTGGCTTAT 59.629 40.000 0.00 0.00 0.00 1.73
600 603 4.721776 ACATTAGAGGAGATTGGTGGCTTA 59.278 41.667 0.00 0.00 0.00 3.09
601 604 3.525199 ACATTAGAGGAGATTGGTGGCTT 59.475 43.478 0.00 0.00 0.00 4.35
602 605 3.118531 ACATTAGAGGAGATTGGTGGCT 58.881 45.455 0.00 0.00 0.00 4.75
603 606 3.567478 ACATTAGAGGAGATTGGTGGC 57.433 47.619 0.00 0.00 0.00 5.01
604 607 5.614324 TGTACATTAGAGGAGATTGGTGG 57.386 43.478 0.00 0.00 0.00 4.61
605 608 7.275183 TGAATGTACATTAGAGGAGATTGGTG 58.725 38.462 20.83 0.00 0.00 4.17
606 609 7.437713 TGAATGTACATTAGAGGAGATTGGT 57.562 36.000 20.83 0.00 0.00 3.67
607 610 7.770433 TGTTGAATGTACATTAGAGGAGATTGG 59.230 37.037 20.83 0.00 0.00 3.16
608 611 8.722480 TGTTGAATGTACATTAGAGGAGATTG 57.278 34.615 20.83 0.00 0.00 2.67
609 612 9.739276 TTTGTTGAATGTACATTAGAGGAGATT 57.261 29.630 20.83 0.00 0.00 2.40
610 613 9.739276 TTTTGTTGAATGTACATTAGAGGAGAT 57.261 29.630 20.83 0.00 0.00 2.75
611 614 8.999431 GTTTTGTTGAATGTACATTAGAGGAGA 58.001 33.333 20.83 3.69 0.00 3.71
612 615 9.003658 AGTTTTGTTGAATGTACATTAGAGGAG 57.996 33.333 20.83 0.00 0.00 3.69
613 616 8.918202 AGTTTTGTTGAATGTACATTAGAGGA 57.082 30.769 20.83 5.37 0.00 3.71
628 631 8.227791 GCGAGACAAGATTATTAGTTTTGTTGA 58.772 33.333 0.00 0.00 32.58 3.18
629 632 8.230486 AGCGAGACAAGATTATTAGTTTTGTTG 58.770 33.333 0.00 0.00 32.58 3.33
630 633 8.230486 CAGCGAGACAAGATTATTAGTTTTGTT 58.770 33.333 0.00 0.00 32.58 2.83
631 634 7.148407 CCAGCGAGACAAGATTATTAGTTTTGT 60.148 37.037 0.00 0.00 34.91 2.83
632 635 7.182761 CCAGCGAGACAAGATTATTAGTTTTG 58.817 38.462 0.00 0.00 0.00 2.44
633 636 6.183360 GCCAGCGAGACAAGATTATTAGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
634 637 5.294552 GCCAGCGAGACAAGATTATTAGTTT 59.705 40.000 0.00 0.00 0.00 2.66
635 638 4.811557 GCCAGCGAGACAAGATTATTAGTT 59.188 41.667 0.00 0.00 0.00 2.24
636 639 4.372656 GCCAGCGAGACAAGATTATTAGT 58.627 43.478 0.00 0.00 0.00 2.24
637 640 3.426859 CGCCAGCGAGACAAGATTATTAG 59.573 47.826 6.06 0.00 42.83 1.73
638 641 3.067601 TCGCCAGCGAGACAAGATTATTA 59.932 43.478 11.27 0.00 44.01 0.98
639 642 2.159099 TCGCCAGCGAGACAAGATTATT 60.159 45.455 11.27 0.00 44.01 1.40
640 643 1.409064 TCGCCAGCGAGACAAGATTAT 59.591 47.619 11.27 0.00 44.01 1.28
641 644 0.815095 TCGCCAGCGAGACAAGATTA 59.185 50.000 11.27 0.00 44.01 1.75
642 645 1.591703 TCGCCAGCGAGACAAGATT 59.408 52.632 11.27 0.00 44.01 2.40
643 646 3.288484 TCGCCAGCGAGACAAGAT 58.712 55.556 11.27 0.00 44.01 2.40
652 655 3.386486 TGGTATAATAACTTCGCCAGCG 58.614 45.455 5.50 5.50 41.35 5.18
653 656 4.154195 CCATGGTATAATAACTTCGCCAGC 59.846 45.833 2.57 0.00 0.00 4.85
654 657 5.408604 GTCCATGGTATAATAACTTCGCCAG 59.591 44.000 12.58 0.00 0.00 4.85
655 658 5.163290 TGTCCATGGTATAATAACTTCGCCA 60.163 40.000 12.58 0.00 0.00 5.69
656 659 5.178809 GTGTCCATGGTATAATAACTTCGCC 59.821 44.000 12.58 0.00 0.00 5.54
657 660 5.107607 CGTGTCCATGGTATAATAACTTCGC 60.108 44.000 12.58 0.00 0.00 4.70
658 661 5.981315 ACGTGTCCATGGTATAATAACTTCG 59.019 40.000 12.58 11.56 0.00 3.79
659 662 6.982141 TGACGTGTCCATGGTATAATAACTTC 59.018 38.462 12.58 5.03 0.00 3.01
660 663 6.880484 TGACGTGTCCATGGTATAATAACTT 58.120 36.000 12.58 0.00 0.00 2.66
661 664 6.474140 TGACGTGTCCATGGTATAATAACT 57.526 37.500 12.58 0.00 0.00 2.24
662 665 7.724305 AATGACGTGTCCATGGTATAATAAC 57.276 36.000 12.58 0.61 0.00 1.89
663 666 9.263538 GTAAATGACGTGTCCATGGTATAATAA 57.736 33.333 12.58 0.00 0.00 1.40
664 667 8.644216 AGTAAATGACGTGTCCATGGTATAATA 58.356 33.333 12.58 0.00 0.00 0.98
665 668 7.441157 CAGTAAATGACGTGTCCATGGTATAAT 59.559 37.037 12.58 0.00 0.00 1.28
666 669 6.759356 CAGTAAATGACGTGTCCATGGTATAA 59.241 38.462 12.58 0.00 0.00 0.98
667 670 6.127281 ACAGTAAATGACGTGTCCATGGTATA 60.127 38.462 12.58 0.00 0.00 1.47
668 671 5.116180 CAGTAAATGACGTGTCCATGGTAT 58.884 41.667 12.58 0.00 0.00 2.73
669 672 4.020928 ACAGTAAATGACGTGTCCATGGTA 60.021 41.667 12.58 0.00 0.00 3.25
670 673 3.244422 ACAGTAAATGACGTGTCCATGGT 60.244 43.478 12.58 0.00 0.00 3.55
671 674 3.334691 ACAGTAAATGACGTGTCCATGG 58.665 45.455 4.97 4.97 0.00 3.66
672 675 4.450757 TGAACAGTAAATGACGTGTCCATG 59.549 41.667 0.00 0.00 0.00 3.66
673 676 4.637276 TGAACAGTAAATGACGTGTCCAT 58.363 39.130 0.00 0.00 0.00 3.41
674 677 4.061357 TGAACAGTAAATGACGTGTCCA 57.939 40.909 0.00 0.00 0.00 4.02
675 678 6.715344 TTATGAACAGTAAATGACGTGTCC 57.285 37.500 0.00 0.00 0.00 4.02
676 679 9.607285 AAAATTATGAACAGTAAATGACGTGTC 57.393 29.630 0.00 0.00 0.00 3.67
680 683 9.221775 GCCTAAAATTATGAACAGTAAATGACG 57.778 33.333 0.00 0.00 0.00 4.35
681 684 9.221775 CGCCTAAAATTATGAACAGTAAATGAC 57.778 33.333 0.00 0.00 0.00 3.06
682 685 8.402472 CCGCCTAAAATTATGAACAGTAAATGA 58.598 33.333 0.00 0.00 0.00 2.57
683 686 7.167468 GCCGCCTAAAATTATGAACAGTAAATG 59.833 37.037 0.00 0.00 0.00 2.32
684 687 7.147983 TGCCGCCTAAAATTATGAACAGTAAAT 60.148 33.333 0.00 0.00 0.00 1.40
685 688 6.151312 TGCCGCCTAAAATTATGAACAGTAAA 59.849 34.615 0.00 0.00 0.00 2.01
686 689 5.648526 TGCCGCCTAAAATTATGAACAGTAA 59.351 36.000 0.00 0.00 0.00 2.24
687 690 5.186942 TGCCGCCTAAAATTATGAACAGTA 58.813 37.500 0.00 0.00 0.00 2.74
688 691 4.013728 TGCCGCCTAAAATTATGAACAGT 58.986 39.130 0.00 0.00 0.00 3.55
689 692 4.630894 TGCCGCCTAAAATTATGAACAG 57.369 40.909 0.00 0.00 0.00 3.16
690 693 6.892658 ATATGCCGCCTAAAATTATGAACA 57.107 33.333 0.00 0.00 0.00 3.18
691 694 7.484959 GCTAATATGCCGCCTAAAATTATGAAC 59.515 37.037 0.00 0.00 0.00 3.18
692 695 7.535139 GCTAATATGCCGCCTAAAATTATGAA 58.465 34.615 0.00 0.00 0.00 2.57
693 696 6.183360 CGCTAATATGCCGCCTAAAATTATGA 60.183 38.462 0.00 0.00 0.00 2.15
694 697 5.965334 CGCTAATATGCCGCCTAAAATTATG 59.035 40.000 0.00 0.00 0.00 1.90
695 698 5.646360 ACGCTAATATGCCGCCTAAAATTAT 59.354 36.000 0.00 0.00 0.00 1.28
696 699 4.998672 ACGCTAATATGCCGCCTAAAATTA 59.001 37.500 0.00 0.00 0.00 1.40
697 700 3.818773 ACGCTAATATGCCGCCTAAAATT 59.181 39.130 0.00 0.00 0.00 1.82
698 701 3.408634 ACGCTAATATGCCGCCTAAAAT 58.591 40.909 0.00 0.00 0.00 1.82
699 702 2.841215 ACGCTAATATGCCGCCTAAAA 58.159 42.857 0.00 0.00 0.00 1.52
700 703 2.536761 ACGCTAATATGCCGCCTAAA 57.463 45.000 0.00 0.00 0.00 1.85
701 704 2.224090 TGAACGCTAATATGCCGCCTAA 60.224 45.455 0.00 0.00 0.00 2.69
702 705 1.341852 TGAACGCTAATATGCCGCCTA 59.658 47.619 0.00 0.00 0.00 3.93
703 706 0.105964 TGAACGCTAATATGCCGCCT 59.894 50.000 0.00 0.00 0.00 5.52
704 707 0.234884 GTGAACGCTAATATGCCGCC 59.765 55.000 0.00 0.00 0.00 6.13
705 708 1.217882 AGTGAACGCTAATATGCCGC 58.782 50.000 0.00 0.00 0.00 6.53
706 709 3.897325 TCTAGTGAACGCTAATATGCCG 58.103 45.455 0.00 0.00 0.00 5.69
707 710 5.122512 TCTCTAGTGAACGCTAATATGCC 57.877 43.478 0.00 0.00 0.00 4.40
708 711 5.117897 GCTTCTCTAGTGAACGCTAATATGC 59.882 44.000 15.59 7.40 0.00 3.14
709 712 6.442952 AGCTTCTCTAGTGAACGCTAATATG 58.557 40.000 20.28 5.50 32.74 1.78
710 713 6.488683 AGAGCTTCTCTAGTGAACGCTAATAT 59.511 38.462 21.05 11.54 39.28 1.28
711 714 5.823570 AGAGCTTCTCTAGTGAACGCTAATA 59.176 40.000 21.05 0.00 39.28 0.98
712 715 4.642885 AGAGCTTCTCTAGTGAACGCTAAT 59.357 41.667 21.05 14.57 39.28 1.73
713 716 4.011023 AGAGCTTCTCTAGTGAACGCTAA 58.989 43.478 21.05 0.00 39.28 3.09
714 717 3.611970 AGAGCTTCTCTAGTGAACGCTA 58.388 45.455 21.05 0.00 39.28 4.26
715 718 2.442413 AGAGCTTCTCTAGTGAACGCT 58.558 47.619 21.11 21.11 39.28 5.07
716 719 2.920490 CAAGAGCTTCTCTAGTGAACGC 59.080 50.000 15.29 15.29 40.28 4.84
717 720 4.162812 GTCAAGAGCTTCTCTAGTGAACG 58.837 47.826 3.12 2.36 40.28 3.95
718 721 4.021894 TGGTCAAGAGCTTCTCTAGTGAAC 60.022 45.833 3.12 6.62 40.28 3.18
719 722 4.152647 TGGTCAAGAGCTTCTCTAGTGAA 58.847 43.478 7.02 7.02 40.28 3.18
720 723 3.767711 TGGTCAAGAGCTTCTCTAGTGA 58.232 45.455 0.69 0.00 40.28 3.41
721 724 4.527509 TTGGTCAAGAGCTTCTCTAGTG 57.472 45.455 0.69 0.00 40.28 2.74
722 725 5.552870 TTTTGGTCAAGAGCTTCTCTAGT 57.447 39.130 0.69 0.00 40.28 2.57
723 726 8.610896 CATATTTTTGGTCAAGAGCTTCTCTAG 58.389 37.037 0.69 0.00 40.28 2.43
724 727 7.066284 GCATATTTTTGGTCAAGAGCTTCTCTA 59.934 37.037 0.69 0.00 40.28 2.43
725 728 6.127786 GCATATTTTTGGTCAAGAGCTTCTCT 60.128 38.462 0.69 0.00 43.37 3.10
726 729 6.032717 GCATATTTTTGGTCAAGAGCTTCTC 58.967 40.000 0.69 0.00 0.00 2.87
727 730 5.713861 AGCATATTTTTGGTCAAGAGCTTCT 59.286 36.000 0.69 0.00 0.00 2.85
728 731 5.958955 AGCATATTTTTGGTCAAGAGCTTC 58.041 37.500 0.69 0.00 0.00 3.86
729 732 5.990120 AGCATATTTTTGGTCAAGAGCTT 57.010 34.783 0.69 0.00 0.00 3.74
730 733 6.094603 CAGTAGCATATTTTTGGTCAAGAGCT 59.905 38.462 0.00 0.00 0.00 4.09
731 734 6.127897 ACAGTAGCATATTTTTGGTCAAGAGC 60.128 38.462 0.00 0.00 0.00 4.09
732 735 7.383102 ACAGTAGCATATTTTTGGTCAAGAG 57.617 36.000 0.00 0.00 0.00 2.85
733 736 7.759489 AACAGTAGCATATTTTTGGTCAAGA 57.241 32.000 0.00 0.00 0.00 3.02
734 737 9.341899 GTTAACAGTAGCATATTTTTGGTCAAG 57.658 33.333 0.00 0.00 0.00 3.02
735 738 8.851145 TGTTAACAGTAGCATATTTTTGGTCAA 58.149 29.630 3.59 0.00 0.00 3.18
736 739 8.397575 TGTTAACAGTAGCATATTTTTGGTCA 57.602 30.769 3.59 0.00 0.00 4.02
737 740 9.124807 GTTGTTAACAGTAGCATATTTTTGGTC 57.875 33.333 8.56 0.00 0.00 4.02
738 741 8.634444 TGTTGTTAACAGTAGCATATTTTTGGT 58.366 29.630 8.56 0.00 36.25 3.67
739 742 9.638239 ATGTTGTTAACAGTAGCATATTTTTGG 57.362 29.630 8.56 0.00 45.95 3.28
747 750 8.802267 ACCAAATAATGTTGTTAACAGTAGCAT 58.198 29.630 8.56 9.23 43.99 3.79
748 751 8.172352 ACCAAATAATGTTGTTAACAGTAGCA 57.828 30.769 8.56 7.42 43.99 3.49
749 752 9.124807 GAACCAAATAATGTTGTTAACAGTAGC 57.875 33.333 8.56 2.04 43.99 3.58
759 762 9.801873 GTGCTTATATGAACCAAATAATGTTGT 57.198 29.630 0.00 0.00 0.00 3.32
821 824 8.965172 GTATGTGATTTATGACTTAGTGTACCG 58.035 37.037 0.00 0.00 0.00 4.02
893 896 9.865321 CTGAATACTCATTCCATTTCAAATTGT 57.135 29.630 0.00 0.00 39.97 2.71
923 927 6.894654 TGCTCCCTTCCATAAAACATGAATAA 59.105 34.615 0.00 0.00 0.00 1.40
938 942 2.797177 AGACAGATTTGCTCCCTTCC 57.203 50.000 0.00 0.00 0.00 3.46
969 973 9.720667 CAGTAATTTCTGATTGATGCGATTTTA 57.279 29.630 6.22 0.00 37.61 1.52
991 995 2.445525 GGAATTTGGGGATAGGGCAGTA 59.554 50.000 0.00 0.00 0.00 2.74
992 996 1.217942 GGAATTTGGGGATAGGGCAGT 59.782 52.381 0.00 0.00 0.00 4.40
994 998 0.560688 GGGAATTTGGGGATAGGGCA 59.439 55.000 0.00 0.00 0.00 5.36
995 999 0.539669 CGGGAATTTGGGGATAGGGC 60.540 60.000 0.00 0.00 0.00 5.19
996 1000 1.145571 TCGGGAATTTGGGGATAGGG 58.854 55.000 0.00 0.00 0.00 3.53
997 1001 1.202891 GGTCGGGAATTTGGGGATAGG 60.203 57.143 0.00 0.00 0.00 2.57
998 1002 1.202891 GGGTCGGGAATTTGGGGATAG 60.203 57.143 0.00 0.00 0.00 2.08
1017 1023 2.203070 CCGCGAGAATGGAAGGGG 60.203 66.667 8.23 0.00 0.00 4.79
1029 1035 3.115892 GCAATGTCGTTCCCGCGA 61.116 61.111 8.23 0.00 38.68 5.87
1036 1042 1.008361 GCGCCAATTGCAATGTCGTT 61.008 50.000 13.82 0.00 41.33 3.85
1068 1074 2.383608 CGAGAGGGGAGGGGAAAAA 58.616 57.895 0.00 0.00 0.00 1.94
1087 1093 3.645268 ATTTGCGGTGGGGAGAGGC 62.645 63.158 0.00 0.00 0.00 4.70
1109 1115 1.555967 TTGGAATGCTAGGTTTGGCC 58.444 50.000 0.00 0.00 37.58 5.36
1110 1116 2.353704 GGTTTGGAATGCTAGGTTTGGC 60.354 50.000 0.00 0.00 0.00 4.52
1129 1135 4.925576 GCGGCATCGTCGATCGGT 62.926 66.667 16.41 0.00 40.32 4.69
1209 1215 1.993653 CCATCCTGCTCTTGGGTGA 59.006 57.895 0.00 0.00 37.90 4.02
1212 1218 2.123982 GGCCATCCTGCTCTTGGG 60.124 66.667 0.00 0.00 0.00 4.12
1239 1245 4.107051 CCTTTTGCGCTCCGGCAG 62.107 66.667 9.73 0.00 44.94 4.85
1284 1290 7.254932 CGATCTGGTCTTCTTGTTCTTTTTCTT 60.255 37.037 0.00 0.00 0.00 2.52
1289 1295 3.748568 GCGATCTGGTCTTCTTGTTCTTT 59.251 43.478 0.00 0.00 0.00 2.52
1292 1298 2.003301 GGCGATCTGGTCTTCTTGTTC 58.997 52.381 0.00 0.00 0.00 3.18
1295 1301 1.424493 GCGGCGATCTGGTCTTCTTG 61.424 60.000 12.98 0.00 0.00 3.02
1328 1340 1.065782 GGGAGAGGCAGAGGTTTCTTC 60.066 57.143 0.00 0.00 0.00 2.87
1334 1346 1.309688 GAGAGGGAGAGGCAGAGGT 59.690 63.158 0.00 0.00 0.00 3.85
1335 1347 1.457455 GGAGAGGGAGAGGCAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
1336 1348 1.457455 GGGAGAGGGAGAGGCAGAG 60.457 68.421 0.00 0.00 0.00 3.35
1337 1349 2.693017 GGGAGAGGGAGAGGCAGA 59.307 66.667 0.00 0.00 0.00 4.26
1338 1350 2.837291 CGGGAGAGGGAGAGGCAG 60.837 72.222 0.00 0.00 0.00 4.85
1339 1351 3.239627 AACGGGAGAGGGAGAGGCA 62.240 63.158 0.00 0.00 0.00 4.75
1346 1358 2.427245 ATGCTCGAACGGGAGAGGG 61.427 63.158 0.00 0.00 36.08 4.30
1510 1522 0.737715 CTCGTCTTTCTTCTGGGGCG 60.738 60.000 0.00 0.00 0.00 6.13
1525 1537 2.097918 GCGTCGATGTCGTCTCGT 59.902 61.111 6.48 0.00 40.80 4.18
1527 1539 2.648102 CGGCGTCGATGTCGTCTC 60.648 66.667 22.93 0.00 40.80 3.36
1558 1570 1.518302 GACGGGAGAGGCTTCTTCC 59.482 63.158 13.34 13.34 44.67 3.46
1559 1571 1.518302 GGACGGGAGAGGCTTCTTC 59.482 63.158 0.00 0.00 32.53 2.87
1610 1628 2.737830 GCCAGGGCCTCGAGTATC 59.262 66.667 12.31 0.00 34.56 2.24
1691 1709 3.353836 TTGTCGAAGCGGCCTTGC 61.354 61.111 0.00 0.00 0.00 4.01
1701 1719 1.593196 CTGAAGCCCTTGTTGTCGAA 58.407 50.000 0.00 0.00 0.00 3.71
1786 1804 0.603065 ATTTTCTTTGGCAGGGACGC 59.397 50.000 0.00 0.00 0.00 5.19
1847 1865 0.179121 CACCACCGCTCGTAGCAATA 60.179 55.000 7.47 0.00 42.58 1.90
1855 1873 2.664851 TTGCTTCACCACCGCTCG 60.665 61.111 0.00 0.00 0.00 5.03
1889 1907 2.173669 ATCGAATGTCTTGCCCGCG 61.174 57.895 0.00 0.00 0.00 6.46
1898 1916 1.063912 TGGCGCATTTCATCGAATGTC 59.936 47.619 10.83 0.00 38.86 3.06
1900 1918 1.064505 ACTGGCGCATTTCATCGAATG 59.935 47.619 10.83 0.00 39.47 2.67
1901 1919 1.382522 ACTGGCGCATTTCATCGAAT 58.617 45.000 10.83 0.00 0.00 3.34
1914 1932 0.034896 AGACAAGGGTACAACTGGCG 59.965 55.000 0.00 0.00 0.00 5.69
1937 1955 3.405831 CACAATGTGTGTCACCTCATCT 58.594 45.455 5.00 0.00 43.08 2.90
1949 1967 1.533625 CGGGTTCATCCACAATGTGT 58.466 50.000 12.79 0.00 36.68 3.72
1958 1976 1.026718 CCAAGACTGCGGGTTCATCC 61.027 60.000 0.00 0.00 0.00 3.51
2002 2020 0.810648 CAATGCACGTGCCTTGGTAT 59.189 50.000 36.29 22.46 41.10 2.73
2052 2070 1.040646 TCCATGATAGCCTCGGTGAC 58.959 55.000 0.00 0.00 0.00 3.67
2125 2143 1.767759 ATTACCATGGACTTGCTGCC 58.232 50.000 21.47 0.00 0.00 4.85
2173 2196 6.640499 TGCTTTCAGTGGATTGTTAAAATTCG 59.360 34.615 0.00 0.00 0.00 3.34
2177 2200 6.463995 AGTGCTTTCAGTGGATTGTTAAAA 57.536 33.333 0.00 0.00 0.00 1.52
2216 2239 4.326826 CAGGAGAATCTAGCAAACAACCA 58.673 43.478 0.00 0.00 33.73 3.67
2251 2274 7.873719 TGTTTTTCAAGAACATGGAAGTAGA 57.126 32.000 0.00 0.00 32.44 2.59
2261 2284 5.633182 GTCTGCAAGTTGTTTTTCAAGAACA 59.367 36.000 4.48 0.00 38.39 3.18
2262 2285 5.062183 GGTCTGCAAGTTGTTTTTCAAGAAC 59.938 40.000 4.48 0.00 36.59 3.01
2331 2354 7.715249 GCAGGTATTCCAATAACAGATAGAACA 59.285 37.037 0.00 0.00 35.89 3.18
2341 2364 7.568199 ACTTGTATGCAGGTATTCCAATAAC 57.432 36.000 0.00 0.00 32.90 1.89
2345 2368 6.069905 TCCTAACTTGTATGCAGGTATTCCAA 60.070 38.462 0.00 0.00 33.58 3.53
2406 2429 7.717875 AGTCAGTACTTTTACCAAATACAAGCA 59.282 33.333 0.00 0.00 29.00 3.91
2442 2465 8.558973 AGAGTCTCTTCATGGAAAACTTAATG 57.441 34.615 0.00 0.00 0.00 1.90
2444 2467 8.980481 AAAGAGTCTCTTCATGGAAAACTTAA 57.020 30.769 15.51 0.00 35.27 1.85
2517 2541 7.308435 AGTTCAACTCACTTTGCAATATTAGC 58.692 34.615 0.00 0.00 0.00 3.09
2537 2561 3.072330 TGGTCCACAAGCATCTTAGTTCA 59.928 43.478 0.00 0.00 0.00 3.18
2543 2567 2.624838 CAAACTGGTCCACAAGCATCTT 59.375 45.455 0.00 0.00 34.21 2.40
2544 2568 2.233271 CAAACTGGTCCACAAGCATCT 58.767 47.619 0.00 0.00 34.21 2.90
2545 2569 1.270550 CCAAACTGGTCCACAAGCATC 59.729 52.381 0.00 0.00 34.21 3.91
2546 2570 1.331214 CCAAACTGGTCCACAAGCAT 58.669 50.000 0.00 0.00 34.21 3.79
2547 2571 1.391157 GCCAAACTGGTCCACAAGCA 61.391 55.000 0.00 0.00 40.46 3.91
2548 2572 1.109323 AGCCAAACTGGTCCACAAGC 61.109 55.000 0.00 0.00 40.46 4.01
2549 2573 0.670162 CAGCCAAACTGGTCCACAAG 59.330 55.000 0.00 0.00 43.19 3.16
2550 2574 2.805897 CAGCCAAACTGGTCCACAA 58.194 52.632 0.00 0.00 43.19 3.33
2551 2575 4.577152 CAGCCAAACTGGTCCACA 57.423 55.556 0.00 0.00 43.19 4.17
2559 2583 0.250467 ACAGACATCGCAGCCAAACT 60.250 50.000 0.00 0.00 0.00 2.66
2560 2584 0.593128 AACAGACATCGCAGCCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
2561 2585 1.001487 CAAACAGACATCGCAGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
2562 2586 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
2563 2587 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
2564 2588 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
2565 2589 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
2566 2590 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
2567 2591 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
2568 2592 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
2569 2593 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
2570 2594 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
2571 2595 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
2572 2596 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
2573 2597 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
2574 2598 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
2575 2599 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
2576 2600 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
2577 2601 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
2578 2602 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
2579 2603 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
2580 2604 2.158004 AGATAGCCTGGGCCTAATACCA 60.158 50.000 4.53 0.00 43.17 3.25
2581 2605 2.237392 CAGATAGCCTGGGCCTAATACC 59.763 54.545 4.53 0.00 43.17 2.73
2582 2606 2.355209 GCAGATAGCCTGGGCCTAATAC 60.355 54.545 4.53 0.00 43.13 1.89
2583 2607 1.909302 GCAGATAGCCTGGGCCTAATA 59.091 52.381 4.53 0.00 43.13 0.98
2584 2608 0.695347 GCAGATAGCCTGGGCCTAAT 59.305 55.000 4.53 0.00 43.13 1.73
2585 2609 1.758440 CGCAGATAGCCTGGGCCTAA 61.758 60.000 4.53 0.00 46.58 2.69
2586 2610 2.210013 CGCAGATAGCCTGGGCCTA 61.210 63.158 4.53 0.00 46.58 3.93
2587 2611 3.554342 CGCAGATAGCCTGGGCCT 61.554 66.667 4.53 0.00 46.58 5.19
2595 2619 0.952984 GATGAAGGGGCGCAGATAGC 60.953 60.000 10.83 0.00 40.87 2.97
2596 2620 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
2597 2621 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
2598 2622 0.749454 GTTGATGAAGGGGCGCAGAT 60.749 55.000 10.83 0.00 0.00 2.90
2599 2623 1.377202 GTTGATGAAGGGGCGCAGA 60.377 57.895 10.83 0.00 0.00 4.26
2600 2624 1.377725 AGTTGATGAAGGGGCGCAG 60.378 57.895 10.83 0.00 0.00 5.18
2601 2625 1.675310 CAGTTGATGAAGGGGCGCA 60.675 57.895 10.83 0.00 0.00 6.09
2602 2626 2.409870 CCAGTTGATGAAGGGGCGC 61.410 63.158 0.00 0.00 0.00 6.53
2603 2627 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13
2604 2628 2.487986 CCTATCCAGTTGATGAAGGGGC 60.488 54.545 0.00 0.00 34.76 5.80
2605 2629 2.780010 ACCTATCCAGTTGATGAAGGGG 59.220 50.000 0.00 0.00 34.76 4.79
2606 2630 3.200825 ACACCTATCCAGTTGATGAAGGG 59.799 47.826 0.00 0.00 34.76 3.95
2607 2631 4.494091 ACACCTATCCAGTTGATGAAGG 57.506 45.455 0.00 0.00 34.76 3.46
2608 2632 5.053145 GCTACACCTATCCAGTTGATGAAG 58.947 45.833 0.00 0.00 34.76 3.02
2609 2633 4.441495 CGCTACACCTATCCAGTTGATGAA 60.441 45.833 0.00 0.00 34.76 2.57
2610 2634 3.068165 CGCTACACCTATCCAGTTGATGA 59.932 47.826 0.00 0.00 34.76 2.92
2611 2635 3.384668 CGCTACACCTATCCAGTTGATG 58.615 50.000 0.00 0.00 34.76 3.07
2612 2636 2.224066 GCGCTACACCTATCCAGTTGAT 60.224 50.000 0.00 0.00 37.49 2.57
2613 2637 1.136305 GCGCTACACCTATCCAGTTGA 59.864 52.381 0.00 0.00 0.00 3.18
2614 2638 1.571919 GCGCTACACCTATCCAGTTG 58.428 55.000 0.00 0.00 0.00 3.16
2615 2639 0.464452 GGCGCTACACCTATCCAGTT 59.536 55.000 7.64 0.00 0.00 3.16
2616 2640 0.686441 TGGCGCTACACCTATCCAGT 60.686 55.000 7.64 0.00 0.00 4.00
2617 2641 0.032678 CTGGCGCTACACCTATCCAG 59.967 60.000 7.64 0.00 35.68 3.86
2618 2642 0.686441 ACTGGCGCTACACCTATCCA 60.686 55.000 7.64 0.00 0.00 3.41
2619 2643 0.464452 AACTGGCGCTACACCTATCC 59.536 55.000 7.64 0.00 0.00 2.59
2620 2644 1.933853 CAAACTGGCGCTACACCTATC 59.066 52.381 7.64 0.00 0.00 2.08
2621 2645 1.278127 ACAAACTGGCGCTACACCTAT 59.722 47.619 7.64 0.00 0.00 2.57
2622 2646 0.682852 ACAAACTGGCGCTACACCTA 59.317 50.000 7.64 0.00 0.00 3.08
2623 2647 0.179029 AACAAACTGGCGCTACACCT 60.179 50.000 7.64 0.00 0.00 4.00
2624 2648 0.040425 CAACAAACTGGCGCTACACC 60.040 55.000 7.64 0.00 0.00 4.16
2625 2649 0.660300 GCAACAAACTGGCGCTACAC 60.660 55.000 7.64 0.00 0.00 2.90
2626 2650 0.817634 AGCAACAAACTGGCGCTACA 60.818 50.000 7.64 0.00 29.07 2.74
2627 2651 0.310854 AAGCAACAAACTGGCGCTAC 59.689 50.000 7.64 0.00 30.40 3.58
2628 2652 1.804151 CTAAGCAACAAACTGGCGCTA 59.196 47.619 7.64 0.00 30.40 4.26
2629 2653 0.593128 CTAAGCAACAAACTGGCGCT 59.407 50.000 7.64 0.00 31.60 5.92
2630 2654 0.591170 TCTAAGCAACAAACTGGCGC 59.409 50.000 0.00 0.00 0.00 6.53
2631 2655 1.398451 CGTCTAAGCAACAAACTGGCG 60.398 52.381 0.00 0.00 0.00 5.69
2632 2656 1.069227 CCGTCTAAGCAACAAACTGGC 60.069 52.381 0.00 0.00 0.00 4.85
2633 2657 1.069227 GCCGTCTAAGCAACAAACTGG 60.069 52.381 0.00 0.00 0.00 4.00
2634 2658 1.398451 CGCCGTCTAAGCAACAAACTG 60.398 52.381 0.00 0.00 0.00 3.16
2635 2659 0.865769 CGCCGTCTAAGCAACAAACT 59.134 50.000 0.00 0.00 0.00 2.66
2636 2660 0.110373 CCGCCGTCTAAGCAACAAAC 60.110 55.000 0.00 0.00 0.00 2.93
2637 2661 1.847890 GCCGCCGTCTAAGCAACAAA 61.848 55.000 0.00 0.00 0.00 2.83
2638 2662 2.322081 GCCGCCGTCTAAGCAACAA 61.322 57.895 0.00 0.00 0.00 2.83
2639 2663 2.725203 AAGCCGCCGTCTAAGCAACA 62.725 55.000 0.00 0.00 0.00 3.33
2640 2664 1.574702 AAAGCCGCCGTCTAAGCAAC 61.575 55.000 0.00 0.00 0.00 4.17
2641 2665 1.302192 AAAGCCGCCGTCTAAGCAA 60.302 52.632 0.00 0.00 0.00 3.91
2642 2666 2.032634 CAAAGCCGCCGTCTAAGCA 61.033 57.895 0.00 0.00 0.00 3.91
2643 2667 2.750888 CCAAAGCCGCCGTCTAAGC 61.751 63.158 0.00 0.00 0.00 3.09
2644 2668 1.359459 GACCAAAGCCGCCGTCTAAG 61.359 60.000 0.00 0.00 0.00 2.18
2645 2669 1.375013 GACCAAAGCCGCCGTCTAA 60.375 57.895 0.00 0.00 0.00 2.10
2646 2670 1.823169 AAGACCAAAGCCGCCGTCTA 61.823 55.000 0.00 0.00 34.53 2.59
2647 2671 1.823169 TAAGACCAAAGCCGCCGTCT 61.823 55.000 0.00 0.00 37.17 4.18
2648 2672 1.375013 TAAGACCAAAGCCGCCGTC 60.375 57.895 0.00 0.00 0.00 4.79
2649 2673 1.670083 GTAAGACCAAAGCCGCCGT 60.670 57.895 0.00 0.00 0.00 5.68
2650 2674 1.375523 AGTAAGACCAAAGCCGCCG 60.376 57.895 0.00 0.00 0.00 6.46
2651 2675 0.605589 ACAGTAAGACCAAAGCCGCC 60.606 55.000 0.00 0.00 0.00 6.13
2652 2676 0.517316 CACAGTAAGACCAAAGCCGC 59.483 55.000 0.00 0.00 0.00 6.53
2653 2677 1.156736 CCACAGTAAGACCAAAGCCG 58.843 55.000 0.00 0.00 0.00 5.52
2654 2678 2.271944 ACCACAGTAAGACCAAAGCC 57.728 50.000 0.00 0.00 0.00 4.35
2655 2679 6.171213 AGTAATACCACAGTAAGACCAAAGC 58.829 40.000 0.00 0.00 30.59 3.51
2656 2680 8.504005 CAAAGTAATACCACAGTAAGACCAAAG 58.496 37.037 0.00 0.00 30.59 2.77
2657 2681 7.994334 ACAAAGTAATACCACAGTAAGACCAAA 59.006 33.333 0.00 0.00 30.59 3.28
2658 2682 7.511268 ACAAAGTAATACCACAGTAAGACCAA 58.489 34.615 0.00 0.00 30.59 3.67
2659 2683 7.069877 ACAAAGTAATACCACAGTAAGACCA 57.930 36.000 0.00 0.00 30.59 4.02
2660 2684 9.148104 CTTACAAAGTAATACCACAGTAAGACC 57.852 37.037 12.91 0.00 39.45 3.85
2661 2685 9.148104 CCTTACAAAGTAATACCACAGTAAGAC 57.852 37.037 16.81 0.00 39.45 3.01
2662 2686 8.873144 ACCTTACAAAGTAATACCACAGTAAGA 58.127 33.333 16.81 0.00 39.45 2.10
2663 2687 9.498176 AACCTTACAAAGTAATACCACAGTAAG 57.502 33.333 11.96 11.96 37.80 2.34
2664 2688 9.850198 AAACCTTACAAAGTAATACCACAGTAA 57.150 29.630 0.00 0.00 30.59 2.24
2665 2689 9.850198 AAAACCTTACAAAGTAATACCACAGTA 57.150 29.630 0.00 0.00 0.00 2.74
2666 2690 8.626526 CAAAACCTTACAAAGTAATACCACAGT 58.373 33.333 0.00 0.00 0.00 3.55
2667 2691 8.626526 ACAAAACCTTACAAAGTAATACCACAG 58.373 33.333 0.00 0.00 0.00 3.66
2668 2692 8.407064 CACAAAACCTTACAAAGTAATACCACA 58.593 33.333 0.00 0.00 0.00 4.17
2669 2693 8.623030 TCACAAAACCTTACAAAGTAATACCAC 58.377 33.333 0.00 0.00 0.00 4.16
2670 2694 8.749026 TCACAAAACCTTACAAAGTAATACCA 57.251 30.769 0.00 0.00 0.00 3.25
2671 2695 9.059260 TCTCACAAAACCTTACAAAGTAATACC 57.941 33.333 0.00 0.00 0.00 2.73
2690 2714 8.402472 CGGCCACTTTATTAATTATTCTCACAA 58.598 33.333 2.24 0.00 0.00 3.33
2691 2715 7.554835 ACGGCCACTTTATTAATTATTCTCACA 59.445 33.333 2.24 0.00 0.00 3.58
2692 2716 7.927048 ACGGCCACTTTATTAATTATTCTCAC 58.073 34.615 2.24 0.00 0.00 3.51
2693 2717 9.787435 ATACGGCCACTTTATTAATTATTCTCA 57.213 29.630 2.24 0.00 0.00 3.27
2695 2719 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
2696 2720 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
2697 2721 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
2698 2722 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
2699 2723 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
2700 2724 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
2701 2725 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
2702 2726 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
2703 2727 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
2704 2728 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
2705 2729 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
2706 2730 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85
2707 2731 1.714899 GCGATGCATACGGCCACTTT 61.715 55.000 16.56 0.00 43.89 2.66
2708 2732 2.180204 GCGATGCATACGGCCACTT 61.180 57.895 16.56 0.00 43.89 3.16
2709 2733 2.588877 GCGATGCATACGGCCACT 60.589 61.111 16.56 0.00 43.89 4.00
2714 2738 1.004560 ATCTGGGCGATGCATACGG 60.005 57.895 16.56 6.65 0.00 4.02
2715 2739 2.156542 CATCTGGGCGATGCATACG 58.843 57.895 0.00 6.68 42.75 3.06
2722 2746 2.827423 CCTCTGCATCTGGGCGAT 59.173 61.111 0.00 0.00 36.28 4.58
2723 2747 4.166888 GCCTCTGCATCTGGGCGA 62.167 66.667 0.00 0.00 37.47 5.54
2726 2750 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
2727 2751 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2728 2752 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2734 2758 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
2740 2764 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
2741 2765 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
2742 2766 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
2743 2767 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
2767 2791 6.321181 TGAAACTGGTCTACAAGCATCTTTTT 59.679 34.615 0.00 0.00 34.21 1.94
2768 2792 5.827797 TGAAACTGGTCTACAAGCATCTTTT 59.172 36.000 0.00 0.00 34.21 2.27
2769 2793 5.376625 TGAAACTGGTCTACAAGCATCTTT 58.623 37.500 0.00 0.00 34.21 2.52
2800 2824 8.540388 GGAGATGGCATACAAATATAACCTAGA 58.460 37.037 0.00 0.00 0.00 2.43
2811 2835 2.311542 ACCCAAGGAGATGGCATACAAA 59.688 45.455 0.00 0.00 39.26 2.83
2819 2843 4.778213 TCTATCAAACCCAAGGAGATGG 57.222 45.455 0.00 0.00 40.35 3.51
2907 2931 5.296283 TCACAATTGGTCAAAATTTGCAAGG 59.704 36.000 10.83 1.19 0.00 3.61
2920 2944 5.106987 GCCAAATTCAACATCACAATTGGTC 60.107 40.000 10.83 0.00 0.00 4.02
2927 2951 4.933505 TGAAGCCAAATTCAACATCACA 57.066 36.364 0.00 0.00 36.28 3.58
2945 2969 4.343526 TGCCTCTTTGCCTAAACAATTGAA 59.656 37.500 13.59 0.00 0.00 2.69
3021 3047 5.530519 TCATTATGTGTTCTCGACTTTGC 57.469 39.130 0.00 0.00 0.00 3.68
3038 3064 7.201609 CGCTCTACCAAAAGTATGCTTTCATTA 60.202 37.037 9.35 0.92 43.52 1.90
3057 3083 5.277538 CCTCAATTTTATCCAAGCGCTCTAC 60.278 44.000 12.06 0.00 0.00 2.59
3058 3084 4.816385 CCTCAATTTTATCCAAGCGCTCTA 59.184 41.667 12.06 0.00 0.00 2.43
3113 3139 7.869429 AGTTCTGCCATTTCAAGTTTAATTCTG 59.131 33.333 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.