Multiple sequence alignment - TraesCS1B01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G087400 chr1B 100.000 2633 0 0 1 2633 81745171 81747803 0.000000e+00 4863
1 TraesCS1B01G087400 chr1B 84.381 1050 121 19 340 1384 89521236 89522247 0.000000e+00 990
2 TraesCS1B01G087400 chr1B 83.444 1057 127 19 340 1384 82734666 82735686 0.000000e+00 939
3 TraesCS1B01G087400 chr1B 83.043 690 63 28 1977 2633 82736362 82737030 6.320000e-161 577
4 TraesCS1B01G087400 chr1B 88.112 429 46 2 480 904 84383498 84383071 3.020000e-139 505
5 TraesCS1B01G087400 chr1B 82.834 501 52 19 2142 2633 89523147 89523622 4.050000e-113 418
6 TraesCS1B01G087400 chr1B 89.226 297 32 0 1351 1647 82735683 82735979 3.200000e-99 372
7 TraesCS1B01G087400 chr1B 81.497 481 53 16 906 1384 84381674 84381228 1.930000e-96 363
8 TraesCS1B01G087400 chr1B 88.000 300 36 0 1351 1650 84381231 84380932 3.220000e-94 355
9 TraesCS1B01G087400 chr1B 88.215 297 35 0 1351 1647 89522244 89522540 3.220000e-94 355
10 TraesCS1B01G087400 chr5D 89.377 979 56 9 1691 2633 20210915 20211881 0.000000e+00 1188
11 TraesCS1B01G087400 chr5D 83.333 1140 124 26 295 1384 20209505 20210628 0.000000e+00 992
12 TraesCS1B01G087400 chr5D 92.282 298 23 0 1351 1648 20210625 20210922 8.710000e-115 424
13 TraesCS1B01G087400 chr3A 84.673 398 40 17 2148 2534 15474342 15474729 6.880000e-101 377
14 TraesCS1B01G087400 chr3A 93.976 83 5 0 2540 2622 15474792 15474874 2.750000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G087400 chr1B 81745171 81747803 2632 False 4863.000000 4863 100.000000 1 2633 1 chr1B.!!$F1 2632
1 TraesCS1B01G087400 chr1B 82734666 82737030 2364 False 629.333333 939 85.237667 340 2633 3 chr1B.!!$F2 2293
2 TraesCS1B01G087400 chr1B 89521236 89523622 2386 False 587.666667 990 85.143333 340 2633 3 chr1B.!!$F3 2293
3 TraesCS1B01G087400 chr1B 84380932 84383498 2566 True 407.666667 505 85.869667 480 1650 3 chr1B.!!$R1 1170
4 TraesCS1B01G087400 chr5D 20209505 20211881 2376 False 868.000000 1188 88.330667 295 2633 3 chr5D.!!$F1 2338
5 TraesCS1B01G087400 chr3A 15474342 15474874 532 False 251.500000 377 89.324500 2148 2622 2 chr3A.!!$F1 474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.036010 AGCAAGGCGAGCAAGTATGT 60.036 50.0 6.95 0.0 0.0 2.29 F
234 235 0.038744 AACTCCTCCGAACTACCCGA 59.961 55.0 0.00 0.0 0.0 5.14 F
336 337 0.179189 GTCGCTTGCCCAAAATCGAG 60.179 55.0 0.00 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1147 2632 0.249114 GCCTCCTCCGACGATTCTTC 60.249 60.0 0.0 0.0 0.00 2.87 R
1300 2786 0.593128 CTTTTGGGCTCGACAGGTTG 59.407 55.0 0.0 0.0 0.00 3.77 R
2308 4003 0.040157 CGCACACACACATTGGGAAG 60.040 55.0 0.0 0.0 30.45 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.060038 CAAGCCCGGCCAAGCAAG 62.060 66.667 15.84 4.33 0.00 4.01
25 26 3.673484 GCCAAGCAAGGCGAGCAA 61.673 61.111 3.54 0.00 46.12 3.91
26 27 2.564975 CCAAGCAAGGCGAGCAAG 59.435 61.111 6.95 0.00 0.00 4.01
27 28 2.263741 CCAAGCAAGGCGAGCAAGT 61.264 57.895 6.95 0.00 0.00 3.16
28 29 0.955428 CCAAGCAAGGCGAGCAAGTA 60.955 55.000 6.95 0.00 0.00 2.24
29 30 1.089920 CAAGCAAGGCGAGCAAGTAT 58.910 50.000 6.95 0.00 0.00 2.12
30 31 1.089920 AAGCAAGGCGAGCAAGTATG 58.910 50.000 6.95 0.00 0.00 2.39
31 32 0.036010 AGCAAGGCGAGCAAGTATGT 60.036 50.000 6.95 0.00 0.00 2.29
32 33 0.097674 GCAAGGCGAGCAAGTATGTG 59.902 55.000 0.00 0.00 0.00 3.21
33 34 0.097674 CAAGGCGAGCAAGTATGTGC 59.902 55.000 0.00 0.00 45.28 4.57
40 41 2.244000 GCAAGTATGTGCGTGTGGT 58.756 52.632 0.00 0.00 34.21 4.16
41 42 0.165944 GCAAGTATGTGCGTGTGGTC 59.834 55.000 0.00 0.00 34.21 4.02
42 43 1.795768 CAAGTATGTGCGTGTGGTCT 58.204 50.000 0.00 0.00 0.00 3.85
43 44 2.143122 CAAGTATGTGCGTGTGGTCTT 58.857 47.619 0.00 0.00 0.00 3.01
44 45 2.080286 AGTATGTGCGTGTGGTCTTC 57.920 50.000 0.00 0.00 0.00 2.87
45 46 1.343142 AGTATGTGCGTGTGGTCTTCA 59.657 47.619 0.00 0.00 0.00 3.02
46 47 2.139917 GTATGTGCGTGTGGTCTTCAA 58.860 47.619 0.00 0.00 0.00 2.69
47 48 1.896220 ATGTGCGTGTGGTCTTCAAT 58.104 45.000 0.00 0.00 0.00 2.57
48 49 1.674359 TGTGCGTGTGGTCTTCAATT 58.326 45.000 0.00 0.00 0.00 2.32
49 50 2.020720 TGTGCGTGTGGTCTTCAATTT 58.979 42.857 0.00 0.00 0.00 1.82
50 51 2.032799 TGTGCGTGTGGTCTTCAATTTC 59.967 45.455 0.00 0.00 0.00 2.17
51 52 2.290641 GTGCGTGTGGTCTTCAATTTCT 59.709 45.455 0.00 0.00 0.00 2.52
52 53 2.548057 TGCGTGTGGTCTTCAATTTCTC 59.452 45.455 0.00 0.00 0.00 2.87
53 54 2.808543 GCGTGTGGTCTTCAATTTCTCT 59.191 45.455 0.00 0.00 0.00 3.10
54 55 3.120511 GCGTGTGGTCTTCAATTTCTCTC 60.121 47.826 0.00 0.00 0.00 3.20
55 56 4.310769 CGTGTGGTCTTCAATTTCTCTCT 58.689 43.478 0.00 0.00 0.00 3.10
56 57 4.151335 CGTGTGGTCTTCAATTTCTCTCTG 59.849 45.833 0.00 0.00 0.00 3.35
57 58 5.059833 GTGTGGTCTTCAATTTCTCTCTGT 58.940 41.667 0.00 0.00 0.00 3.41
58 59 6.223852 GTGTGGTCTTCAATTTCTCTCTGTA 58.776 40.000 0.00 0.00 0.00 2.74
59 60 6.876257 GTGTGGTCTTCAATTTCTCTCTGTAT 59.124 38.462 0.00 0.00 0.00 2.29
60 61 7.064016 GTGTGGTCTTCAATTTCTCTCTGTATC 59.936 40.741 0.00 0.00 0.00 2.24
61 62 7.099764 GTGGTCTTCAATTTCTCTCTGTATCA 58.900 38.462 0.00 0.00 0.00 2.15
62 63 7.064016 GTGGTCTTCAATTTCTCTCTGTATCAC 59.936 40.741 0.00 0.00 0.00 3.06
63 64 7.099764 GGTCTTCAATTTCTCTCTGTATCACA 58.900 38.462 0.00 0.00 0.00 3.58
64 65 7.768120 GGTCTTCAATTTCTCTCTGTATCACAT 59.232 37.037 0.00 0.00 0.00 3.21
65 66 8.816144 GTCTTCAATTTCTCTCTGTATCACATC 58.184 37.037 0.00 0.00 0.00 3.06
66 67 8.534496 TCTTCAATTTCTCTCTGTATCACATCA 58.466 33.333 0.00 0.00 0.00 3.07
67 68 9.327628 CTTCAATTTCTCTCTGTATCACATCAT 57.672 33.333 0.00 0.00 0.00 2.45
68 69 9.676861 TTCAATTTCTCTCTGTATCACATCATT 57.323 29.630 0.00 0.00 0.00 2.57
73 74 9.591792 TTTCTCTCTGTATCACATCATTAAGTG 57.408 33.333 0.00 0.00 37.10 3.16
74 75 8.298729 TCTCTCTGTATCACATCATTAAGTGT 57.701 34.615 0.00 0.00 37.07 3.55
75 76 8.193438 TCTCTCTGTATCACATCATTAAGTGTG 58.807 37.037 10.53 10.53 45.37 3.82
76 77 7.267857 TCTCTGTATCACATCATTAAGTGTGG 58.732 38.462 14.63 3.48 44.41 4.17
77 78 6.946340 TCTGTATCACATCATTAAGTGTGGT 58.054 36.000 14.63 11.71 44.41 4.16
78 79 7.041721 TCTGTATCACATCATTAAGTGTGGTC 58.958 38.462 14.63 8.65 44.41 4.02
79 80 6.946340 TGTATCACATCATTAAGTGTGGTCT 58.054 36.000 14.63 6.50 44.41 3.85
80 81 8.073467 TGTATCACATCATTAAGTGTGGTCTA 57.927 34.615 14.63 5.85 44.41 2.59
81 82 8.197439 TGTATCACATCATTAAGTGTGGTCTAG 58.803 37.037 14.63 0.00 44.41 2.43
82 83 6.850752 TCACATCATTAAGTGTGGTCTAGA 57.149 37.500 14.63 0.00 44.41 2.43
83 84 7.423844 TCACATCATTAAGTGTGGTCTAGAT 57.576 36.000 14.63 0.00 44.41 1.98
84 85 8.533569 TCACATCATTAAGTGTGGTCTAGATA 57.466 34.615 14.63 0.00 44.41 1.98
85 86 8.977412 TCACATCATTAAGTGTGGTCTAGATAA 58.023 33.333 14.63 0.00 44.41 1.75
86 87 9.035607 CACATCATTAAGTGTGGTCTAGATAAC 57.964 37.037 0.00 0.00 41.46 1.89
87 88 8.204836 ACATCATTAAGTGTGGTCTAGATAACC 58.795 37.037 0.00 0.00 37.31 2.85
88 89 7.120923 TCATTAAGTGTGGTCTAGATAACCC 57.879 40.000 0.00 0.00 35.84 4.11
89 90 6.670464 TCATTAAGTGTGGTCTAGATAACCCA 59.330 38.462 0.00 0.00 35.84 4.51
90 91 4.820894 AAGTGTGGTCTAGATAACCCAC 57.179 45.455 18.82 18.82 46.04 4.61
91 92 4.062490 AGTGTGGTCTAGATAACCCACT 57.938 45.455 23.47 18.03 46.02 4.00
92 93 5.202746 AGTGTGGTCTAGATAACCCACTA 57.797 43.478 23.47 12.25 46.02 2.74
93 94 4.954826 AGTGTGGTCTAGATAACCCACTAC 59.045 45.833 23.47 19.61 46.02 2.73
94 95 4.708421 GTGTGGTCTAGATAACCCACTACA 59.292 45.833 23.47 10.11 46.02 2.74
95 96 5.363005 GTGTGGTCTAGATAACCCACTACAT 59.637 44.000 23.47 0.00 46.02 2.29
96 97 6.548622 GTGTGGTCTAGATAACCCACTACATA 59.451 42.308 23.47 7.24 46.02 2.29
97 98 7.069085 GTGTGGTCTAGATAACCCACTACATAA 59.931 40.741 23.47 6.68 46.02 1.90
98 99 7.287005 TGTGGTCTAGATAACCCACTACATAAG 59.713 40.741 23.47 0.00 46.02 1.73
99 100 7.504911 GTGGTCTAGATAACCCACTACATAAGA 59.495 40.741 18.51 0.00 43.21 2.10
100 101 8.232412 TGGTCTAGATAACCCACTACATAAGAT 58.768 37.037 0.00 0.00 35.84 2.40
101 102 8.524487 GGTCTAGATAACCCACTACATAAGATG 58.476 40.741 0.00 0.00 0.00 2.90
102 103 8.524487 GTCTAGATAACCCACTACATAAGATGG 58.476 40.741 0.00 0.00 33.60 3.51
103 104 8.232412 TCTAGATAACCCACTACATAAGATGGT 58.768 37.037 0.00 0.00 35.18 3.55
104 105 7.691993 AGATAACCCACTACATAAGATGGTT 57.308 36.000 0.00 0.00 41.88 3.67
105 106 8.102484 AGATAACCCACTACATAAGATGGTTT 57.898 34.615 0.00 0.00 40.58 3.27
106 107 9.220906 AGATAACCCACTACATAAGATGGTTTA 57.779 33.333 0.00 0.00 40.58 2.01
107 108 9.841295 GATAACCCACTACATAAGATGGTTTAA 57.159 33.333 0.00 0.00 40.58 1.52
108 109 7.933215 AACCCACTACATAAGATGGTTTAAC 57.067 36.000 0.00 0.00 38.56 2.01
109 110 6.420638 ACCCACTACATAAGATGGTTTAACC 58.579 40.000 7.27 7.27 39.22 2.85
110 111 5.826208 CCCACTACATAAGATGGTTTAACCC 59.174 44.000 12.02 0.00 37.50 4.11
111 112 6.353602 CCCACTACATAAGATGGTTTAACCCT 60.354 42.308 12.02 0.92 37.50 4.34
112 113 7.116736 CCACTACATAAGATGGTTTAACCCTT 58.883 38.462 12.02 10.73 37.50 3.95
113 114 7.282450 CCACTACATAAGATGGTTTAACCCTTC 59.718 40.741 12.02 8.67 37.50 3.46
114 115 8.047310 CACTACATAAGATGGTTTAACCCTTCT 58.953 37.037 12.02 10.78 39.87 2.85
115 116 8.612145 ACTACATAAGATGGTTTAACCCTTCTT 58.388 33.333 23.48 23.48 45.68 2.52
116 117 7.939784 ACATAAGATGGTTTAACCCTTCTTC 57.060 36.000 23.59 9.94 43.88 2.87
117 118 6.890268 ACATAAGATGGTTTAACCCTTCTTCC 59.110 38.462 23.59 1.20 43.88 3.46
118 119 5.333566 AAGATGGTTTAACCCTTCTTCCA 57.666 39.130 18.00 0.00 42.31 3.53
119 120 4.663334 AGATGGTTTAACCCTTCTTCCAC 58.337 43.478 12.02 0.00 37.50 4.02
120 121 4.354087 AGATGGTTTAACCCTTCTTCCACT 59.646 41.667 12.02 0.00 37.50 4.00
121 122 5.550403 AGATGGTTTAACCCTTCTTCCACTA 59.450 40.000 12.02 0.00 37.50 2.74
122 123 5.237236 TGGTTTAACCCTTCTTCCACTAG 57.763 43.478 12.02 0.00 37.50 2.57
123 124 4.661709 TGGTTTAACCCTTCTTCCACTAGT 59.338 41.667 12.02 0.00 37.50 2.57
124 125 5.001874 GGTTTAACCCTTCTTCCACTAGTG 58.998 45.833 16.34 16.34 30.04 2.74
125 126 6.034151 GGTTTAACCCTTCTTCCACTAGTGG 61.034 48.000 32.61 32.61 41.48 4.00
126 127 8.385258 GGTTTAACCCTTCTTCCACTAGTGGT 62.385 46.154 35.34 18.90 41.14 4.16
127 128 9.107233 GGTTTAACCCTTCTTCCACTAGTGGTA 62.107 44.444 35.34 27.40 41.14 3.25
138 139 5.687166 CCACTAGTGGTATGGGACTAAAA 57.313 43.478 30.57 0.00 45.53 1.52
139 140 6.248569 CCACTAGTGGTATGGGACTAAAAT 57.751 41.667 30.57 0.00 45.53 1.82
140 141 6.659824 CCACTAGTGGTATGGGACTAAAATT 58.340 40.000 30.57 0.00 45.53 1.82
141 142 7.116736 CCACTAGTGGTATGGGACTAAAATTT 58.883 38.462 30.57 0.00 45.53 1.82
142 143 7.067008 CCACTAGTGGTATGGGACTAAAATTTG 59.933 40.741 30.57 1.21 45.53 2.32
143 144 7.827236 CACTAGTGGTATGGGACTAAAATTTGA 59.173 37.037 15.49 0.00 0.00 2.69
144 145 8.047310 ACTAGTGGTATGGGACTAAAATTTGAG 58.953 37.037 0.52 0.52 0.00 3.02
145 146 5.652452 AGTGGTATGGGACTAAAATTTGAGC 59.348 40.000 2.11 0.00 0.00 4.26
146 147 5.417580 GTGGTATGGGACTAAAATTTGAGCA 59.582 40.000 2.11 0.00 0.00 4.26
147 148 5.417580 TGGTATGGGACTAAAATTTGAGCAC 59.582 40.000 2.11 0.00 0.00 4.40
148 149 5.163550 GGTATGGGACTAAAATTTGAGCACC 60.164 44.000 2.11 5.90 0.00 5.01
149 150 3.838565 TGGGACTAAAATTTGAGCACCA 58.161 40.909 12.61 12.61 0.00 4.17
150 151 3.572255 TGGGACTAAAATTTGAGCACCAC 59.428 43.478 12.61 7.39 0.00 4.16
151 152 3.056821 GGGACTAAAATTTGAGCACCACC 60.057 47.826 16.46 7.70 0.00 4.61
152 153 3.826729 GGACTAAAATTTGAGCACCACCT 59.173 43.478 2.11 0.00 0.00 4.00
153 154 5.007682 GGACTAAAATTTGAGCACCACCTA 58.992 41.667 2.11 0.00 0.00 3.08
154 155 5.106277 GGACTAAAATTTGAGCACCACCTAC 60.106 44.000 2.11 0.00 0.00 3.18
155 156 5.381757 ACTAAAATTTGAGCACCACCTACA 58.618 37.500 2.11 0.00 0.00 2.74
156 157 4.853924 AAAATTTGAGCACCACCTACAG 57.146 40.909 0.00 0.00 0.00 2.74
157 158 2.496899 ATTTGAGCACCACCTACAGG 57.503 50.000 0.00 0.00 42.17 4.00
158 159 0.400213 TTTGAGCACCACCTACAGGG 59.600 55.000 0.00 0.00 40.27 4.45
159 160 1.488705 TTGAGCACCACCTACAGGGG 61.489 60.000 0.00 0.00 40.27 4.79
160 161 1.918800 GAGCACCACCTACAGGGGT 60.919 63.158 0.00 1.68 36.70 4.95
161 162 1.900545 GAGCACCACCTACAGGGGTC 61.901 65.000 0.00 0.00 36.70 4.46
162 163 1.918800 GCACCACCTACAGGGGTCT 60.919 63.158 0.00 0.00 36.70 3.85
163 164 1.489560 GCACCACCTACAGGGGTCTT 61.490 60.000 0.00 0.00 36.70 3.01
164 165 0.613777 CACCACCTACAGGGGTCTTC 59.386 60.000 0.00 0.00 36.70 2.87
165 166 0.546988 ACCACCTACAGGGGTCTTCC 60.547 60.000 0.00 0.00 36.70 3.46
166 167 0.252742 CCACCTACAGGGGTCTTCCT 60.253 60.000 0.00 0.00 36.70 3.36
167 168 1.657804 CACCTACAGGGGTCTTCCTT 58.342 55.000 0.00 0.00 37.52 3.36
168 169 2.561297 CCACCTACAGGGGTCTTCCTTA 60.561 54.545 0.00 0.00 36.70 2.69
169 170 2.766828 CACCTACAGGGGTCTTCCTTAG 59.233 54.545 0.00 0.00 37.52 2.18
170 171 2.658489 ACCTACAGGGGTCTTCCTTAGA 59.342 50.000 0.00 0.00 40.27 2.10
171 172 3.078612 ACCTACAGGGGTCTTCCTTAGAA 59.921 47.826 0.00 0.00 40.27 2.10
172 173 4.101856 CCTACAGGGGTCTTCCTTAGAAA 58.898 47.826 0.00 0.00 34.31 2.52
173 174 4.722279 CCTACAGGGGTCTTCCTTAGAAAT 59.278 45.833 0.00 0.00 34.31 2.17
174 175 5.191921 CCTACAGGGGTCTTCCTTAGAAATT 59.808 44.000 0.00 0.00 34.31 1.82
175 176 4.923415 ACAGGGGTCTTCCTTAGAAATTG 58.077 43.478 0.00 0.00 34.31 2.32
176 177 4.354087 ACAGGGGTCTTCCTTAGAAATTGT 59.646 41.667 0.00 0.00 34.31 2.71
177 178 5.550403 ACAGGGGTCTTCCTTAGAAATTGTA 59.450 40.000 0.00 0.00 34.31 2.41
178 179 5.880887 CAGGGGTCTTCCTTAGAAATTGTAC 59.119 44.000 0.00 0.00 34.31 2.90
179 180 5.550403 AGGGGTCTTCCTTAGAAATTGTACA 59.450 40.000 0.00 0.00 33.81 2.90
180 181 5.880887 GGGGTCTTCCTTAGAAATTGTACAG 59.119 44.000 0.00 0.00 33.81 2.74
181 182 6.296259 GGGGTCTTCCTTAGAAATTGTACAGA 60.296 42.308 0.00 0.00 33.81 3.41
182 183 6.819146 GGGTCTTCCTTAGAAATTGTACAGAG 59.181 42.308 0.00 0.00 33.81 3.35
183 184 6.819146 GGTCTTCCTTAGAAATTGTACAGAGG 59.181 42.308 0.00 0.00 33.81 3.69
184 185 7.387643 GTCTTCCTTAGAAATTGTACAGAGGT 58.612 38.462 0.00 0.00 33.81 3.85
185 186 7.878644 GTCTTCCTTAGAAATTGTACAGAGGTT 59.121 37.037 0.00 0.00 33.81 3.50
186 187 9.096823 TCTTCCTTAGAAATTGTACAGAGGTTA 57.903 33.333 0.00 0.00 0.00 2.85
187 188 9.372369 CTTCCTTAGAAATTGTACAGAGGTTAG 57.628 37.037 0.00 0.00 0.00 2.34
188 189 7.848128 TCCTTAGAAATTGTACAGAGGTTAGG 58.152 38.462 0.00 0.08 0.00 2.69
189 190 6.539103 CCTTAGAAATTGTACAGAGGTTAGGC 59.461 42.308 0.00 0.00 0.00 3.93
190 191 4.844884 AGAAATTGTACAGAGGTTAGGCC 58.155 43.478 0.00 0.00 37.58 5.19
191 192 3.646736 AATTGTACAGAGGTTAGGCCC 57.353 47.619 0.00 0.00 38.26 5.80
192 193 2.032965 TTGTACAGAGGTTAGGCCCA 57.967 50.000 0.00 0.00 38.26 5.36
193 194 2.263895 TGTACAGAGGTTAGGCCCAT 57.736 50.000 0.00 0.00 38.26 4.00
194 195 2.557869 TGTACAGAGGTTAGGCCCATT 58.442 47.619 0.00 0.00 38.26 3.16
195 196 3.726790 TGTACAGAGGTTAGGCCCATTA 58.273 45.455 0.00 0.00 38.26 1.90
196 197 4.303794 TGTACAGAGGTTAGGCCCATTAT 58.696 43.478 0.00 0.00 38.26 1.28
197 198 4.724798 TGTACAGAGGTTAGGCCCATTATT 59.275 41.667 0.00 0.00 38.26 1.40
198 199 4.881157 ACAGAGGTTAGGCCCATTATTT 57.119 40.909 0.00 0.00 38.26 1.40
199 200 4.793201 ACAGAGGTTAGGCCCATTATTTC 58.207 43.478 0.00 0.00 38.26 2.17
200 201 4.478686 ACAGAGGTTAGGCCCATTATTTCT 59.521 41.667 0.00 0.00 38.26 2.52
201 202 5.670361 ACAGAGGTTAGGCCCATTATTTCTA 59.330 40.000 0.00 0.00 38.26 2.10
202 203 6.159751 ACAGAGGTTAGGCCCATTATTTCTAA 59.840 38.462 0.00 0.00 38.26 2.10
203 204 6.486993 CAGAGGTTAGGCCCATTATTTCTAAC 59.513 42.308 0.00 0.00 39.09 2.34
204 205 6.159751 AGAGGTTAGGCCCATTATTTCTAACA 59.840 38.462 0.00 0.00 40.61 2.41
205 206 6.365520 AGGTTAGGCCCATTATTTCTAACAG 58.634 40.000 0.00 0.00 40.61 3.16
206 207 6.069029 AGGTTAGGCCCATTATTTCTAACAGT 60.069 38.462 0.00 0.00 40.61 3.55
207 208 7.128263 AGGTTAGGCCCATTATTTCTAACAGTA 59.872 37.037 0.00 0.00 40.61 2.74
208 209 7.444487 GGTTAGGCCCATTATTTCTAACAGTAG 59.556 40.741 0.00 0.00 40.61 2.57
209 210 6.824958 AGGCCCATTATTTCTAACAGTAGA 57.175 37.500 0.00 0.00 34.39 2.59
210 211 7.208064 AGGCCCATTATTTCTAACAGTAGAA 57.792 36.000 0.00 0.00 43.25 2.10
211 212 7.054751 AGGCCCATTATTTCTAACAGTAGAAC 58.945 38.462 0.00 0.00 44.35 3.01
212 213 6.018180 GGCCCATTATTTCTAACAGTAGAACG 60.018 42.308 0.00 0.00 44.35 3.95
213 214 6.759827 GCCCATTATTTCTAACAGTAGAACGA 59.240 38.462 0.00 0.00 44.35 3.85
214 215 7.042658 GCCCATTATTTCTAACAGTAGAACGAG 60.043 40.741 0.00 0.00 44.35 4.18
215 216 8.195436 CCCATTATTTCTAACAGTAGAACGAGA 58.805 37.037 0.00 0.00 44.35 4.04
216 217 9.582431 CCATTATTTCTAACAGTAGAACGAGAA 57.418 33.333 0.00 0.00 44.35 2.87
219 220 9.837525 TTATTTCTAACAGTAGAACGAGAACTC 57.162 33.333 0.00 0.00 44.35 3.01
220 221 5.876612 TCTAACAGTAGAACGAGAACTCC 57.123 43.478 0.00 0.00 33.23 3.85
221 222 5.558818 TCTAACAGTAGAACGAGAACTCCT 58.441 41.667 0.00 0.00 33.23 3.69
222 223 4.769859 AACAGTAGAACGAGAACTCCTC 57.230 45.455 0.00 0.00 38.55 3.71
223 224 3.083293 ACAGTAGAACGAGAACTCCTCC 58.917 50.000 0.00 0.00 38.71 4.30
224 225 2.096174 CAGTAGAACGAGAACTCCTCCG 59.904 54.545 0.00 0.00 38.71 4.63
225 226 2.027377 AGTAGAACGAGAACTCCTCCGA 60.027 50.000 0.00 0.00 38.71 4.55
226 227 1.906990 AGAACGAGAACTCCTCCGAA 58.093 50.000 0.00 0.00 38.71 4.30
227 228 1.540707 AGAACGAGAACTCCTCCGAAC 59.459 52.381 0.00 0.00 38.71 3.95
228 229 1.540707 GAACGAGAACTCCTCCGAACT 59.459 52.381 0.00 0.00 38.71 3.01
229 230 2.486472 ACGAGAACTCCTCCGAACTA 57.514 50.000 0.00 0.00 38.71 2.24
230 231 2.083002 ACGAGAACTCCTCCGAACTAC 58.917 52.381 0.00 0.00 38.71 2.73
231 232 1.401199 CGAGAACTCCTCCGAACTACC 59.599 57.143 0.00 0.00 38.71 3.18
232 233 1.750206 GAGAACTCCTCCGAACTACCC 59.250 57.143 0.00 0.00 35.87 3.69
233 234 0.455005 GAACTCCTCCGAACTACCCG 59.545 60.000 0.00 0.00 0.00 5.28
234 235 0.038744 AACTCCTCCGAACTACCCGA 59.961 55.000 0.00 0.00 0.00 5.14
235 236 0.258194 ACTCCTCCGAACTACCCGAT 59.742 55.000 0.00 0.00 0.00 4.18
236 237 1.492176 ACTCCTCCGAACTACCCGATA 59.508 52.381 0.00 0.00 0.00 2.92
237 238 2.107901 ACTCCTCCGAACTACCCGATAT 59.892 50.000 0.00 0.00 0.00 1.63
238 239 3.155501 CTCCTCCGAACTACCCGATATT 58.844 50.000 0.00 0.00 0.00 1.28
239 240 3.569491 TCCTCCGAACTACCCGATATTT 58.431 45.455 0.00 0.00 0.00 1.40
240 241 3.319972 TCCTCCGAACTACCCGATATTTG 59.680 47.826 0.00 0.00 0.00 2.32
241 242 3.319972 CCTCCGAACTACCCGATATTTGA 59.680 47.826 0.00 0.00 0.00 2.69
242 243 4.296690 CTCCGAACTACCCGATATTTGAC 58.703 47.826 0.00 0.00 0.00 3.18
243 244 3.700539 TCCGAACTACCCGATATTTGACA 59.299 43.478 0.00 0.00 0.00 3.58
244 245 4.049186 CCGAACTACCCGATATTTGACAG 58.951 47.826 0.00 0.00 0.00 3.51
245 246 4.049186 CGAACTACCCGATATTTGACAGG 58.951 47.826 0.00 0.00 0.00 4.00
246 247 3.470645 ACTACCCGATATTTGACAGGC 57.529 47.619 0.00 0.00 0.00 4.85
247 248 3.039011 ACTACCCGATATTTGACAGGCT 58.961 45.455 0.00 0.00 0.00 4.58
248 249 3.454812 ACTACCCGATATTTGACAGGCTT 59.545 43.478 0.00 0.00 0.00 4.35
249 250 2.643551 ACCCGATATTTGACAGGCTTG 58.356 47.619 0.00 0.00 0.00 4.01
250 251 2.238646 ACCCGATATTTGACAGGCTTGA 59.761 45.455 1.40 0.00 0.00 3.02
251 252 3.278574 CCCGATATTTGACAGGCTTGAA 58.721 45.455 1.40 0.00 0.00 2.69
252 253 3.694072 CCCGATATTTGACAGGCTTGAAA 59.306 43.478 1.40 0.00 0.00 2.69
253 254 4.157656 CCCGATATTTGACAGGCTTGAAAA 59.842 41.667 1.40 3.38 0.00 2.29
254 255 5.163519 CCCGATATTTGACAGGCTTGAAAAT 60.164 40.000 1.40 10.58 32.71 1.82
255 256 6.039270 CCCGATATTTGACAGGCTTGAAAATA 59.961 38.462 17.12 17.12 34.30 1.40
256 257 7.134815 CCGATATTTGACAGGCTTGAAAATAG 58.865 38.462 18.56 10.98 33.82 1.73
257 258 6.634436 CGATATTTGACAGGCTTGAAAATAGC 59.366 38.462 18.07 18.07 33.82 2.97
258 259 5.726980 ATTTGACAGGCTTGAAAATAGCA 57.273 34.783 1.40 0.00 40.42 3.49
259 260 4.771590 TTGACAGGCTTGAAAATAGCAG 57.228 40.909 1.40 0.00 40.42 4.24
260 261 2.489329 TGACAGGCTTGAAAATAGCAGC 59.511 45.455 1.40 0.00 40.42 5.25
261 262 1.821136 ACAGGCTTGAAAATAGCAGCC 59.179 47.619 1.40 0.48 40.42 4.85
262 263 1.820519 CAGGCTTGAAAATAGCAGCCA 59.179 47.619 11.49 0.00 44.18 4.75
263 264 1.821136 AGGCTTGAAAATAGCAGCCAC 59.179 47.619 11.49 0.00 44.18 5.01
264 265 1.134995 GGCTTGAAAATAGCAGCCACC 60.135 52.381 4.12 0.00 41.63 4.61
265 266 1.134995 GCTTGAAAATAGCAGCCACCC 60.135 52.381 0.00 0.00 38.51 4.61
266 267 2.170166 CTTGAAAATAGCAGCCACCCA 58.830 47.619 0.00 0.00 0.00 4.51
267 268 2.530460 TGAAAATAGCAGCCACCCAT 57.470 45.000 0.00 0.00 0.00 4.00
268 269 2.378038 TGAAAATAGCAGCCACCCATC 58.622 47.619 0.00 0.00 0.00 3.51
269 270 1.334869 GAAAATAGCAGCCACCCATCG 59.665 52.381 0.00 0.00 0.00 3.84
270 271 0.466189 AAATAGCAGCCACCCATCGG 60.466 55.000 0.00 0.00 0.00 4.18
288 289 3.853330 CGACGAGCAATGGCCACG 61.853 66.667 8.16 9.85 42.56 4.94
289 290 2.434185 GACGAGCAATGGCCACGA 60.434 61.111 18.43 0.00 42.56 4.35
290 291 2.434884 ACGAGCAATGGCCACGAG 60.435 61.111 18.43 8.03 42.56 4.18
291 292 2.125552 CGAGCAATGGCCACGAGA 60.126 61.111 8.16 0.00 42.56 4.04
292 293 1.741401 CGAGCAATGGCCACGAGAA 60.741 57.895 8.16 0.00 42.56 2.87
293 294 1.298157 CGAGCAATGGCCACGAGAAA 61.298 55.000 8.16 0.00 42.56 2.52
298 299 0.532115 AATGGCCACGAGAAAATGCC 59.468 50.000 8.16 0.00 42.49 4.40
303 304 2.033448 ACGAGAAAATGCCGGCCA 59.967 55.556 26.77 12.96 0.00 5.36
307 308 1.106285 GAGAAAATGCCGGCCATCTT 58.894 50.000 26.77 12.10 31.43 2.40
308 309 0.819582 AGAAAATGCCGGCCATCTTG 59.180 50.000 26.77 0.00 31.43 3.02
318 319 2.279842 GCCATCTTGCCATTGTGGT 58.720 52.632 0.00 0.00 40.46 4.16
323 324 0.537143 TCTTGCCATTGTGGTCGCTT 60.537 50.000 0.00 0.00 40.46 4.68
336 337 0.179189 GTCGCTTGCCCAAAATCGAG 60.179 55.000 0.00 0.00 0.00 4.04
337 338 1.137404 CGCTTGCCCAAAATCGAGG 59.863 57.895 0.00 0.00 0.00 4.63
354 355 2.140717 GAGGGTTTCACCACTACAACG 58.859 52.381 0.00 0.00 41.02 4.10
383 384 1.821088 AAGGTGGAGGAGAACAAGGT 58.179 50.000 0.00 0.00 0.00 3.50
384 385 1.821088 AGGTGGAGGAGAACAAGGTT 58.179 50.000 0.00 0.00 0.00 3.50
385 386 2.986050 AGGTGGAGGAGAACAAGGTTA 58.014 47.619 0.00 0.00 0.00 2.85
396 397 4.895961 AGAACAAGGTTAAGAGTAGGCAC 58.104 43.478 0.00 0.00 0.00 5.01
450 451 1.409412 GTAGATGGCTACATGACGCG 58.591 55.000 3.53 3.53 45.10 6.01
488 489 1.183549 ATAGACGACTGCGACCCTTT 58.816 50.000 0.00 0.00 41.64 3.11
489 490 0.963962 TAGACGACTGCGACCCTTTT 59.036 50.000 0.00 0.00 41.64 2.27
513 514 2.357517 GAGTCGCCACACACCAGG 60.358 66.667 0.00 0.00 0.00 4.45
520 521 2.737180 CACACACCAGGCGAGAGT 59.263 61.111 0.00 0.00 0.00 3.24
558 559 3.645268 ATGGGGAAACTGCCGAGGC 62.645 63.158 7.26 7.26 42.35 4.70
581 586 0.473694 TTGGTGGGAGCAGAGAAGGA 60.474 55.000 0.00 0.00 0.00 3.36
585 590 1.625818 GTGGGAGCAGAGAAGGAAGAA 59.374 52.381 0.00 0.00 0.00 2.52
594 599 5.066593 GCAGAGAAGGAAGAAAGAAAAGGA 58.933 41.667 0.00 0.00 0.00 3.36
614 619 3.341629 CCTGCATGGGGAGTGGGT 61.342 66.667 0.00 0.00 0.00 4.51
620 625 1.465188 ATGGGGAGTGGGTGTTCCA 60.465 57.895 0.00 0.00 44.79 3.53
667 674 2.290008 TGGACAACATCTAACGTGGCAT 60.290 45.455 0.00 0.00 0.00 4.40
685 693 3.248266 GCATTGCAACTGGCTTTAAGAG 58.752 45.455 0.00 0.00 45.15 2.85
687 695 4.797275 GCATTGCAACTGGCTTTAAGAGTT 60.797 41.667 0.00 0.00 45.15 3.01
834 853 2.605837 TATATCGGCGCACAAGGAAA 57.394 45.000 10.83 0.00 0.00 3.13
847 866 2.108952 ACAAGGAAAGCCAGGATTCTGT 59.891 45.455 0.00 0.00 39.31 3.41
867 886 2.093447 GTCGTGATCATCACCCTTCCTT 60.093 50.000 12.37 0.00 44.20 3.36
869 888 2.093500 CGTGATCATCACCCTTCCTTCA 60.093 50.000 12.37 0.00 44.20 3.02
905 2323 9.109393 AGCGATCTCTTGTCTATCTATCTATTC 57.891 37.037 0.00 0.00 0.00 1.75
906 2324 9.109393 GCGATCTCTTGTCTATCTATCTATTCT 57.891 37.037 0.00 0.00 0.00 2.40
946 2383 0.894184 AAAGCCGTCTGTCGAGAGGA 60.894 55.000 10.02 0.00 42.86 3.71
954 2391 4.066490 CGTCTGTCGAGAGGAATATACCT 58.934 47.826 10.02 0.00 41.72 3.08
965 2402 7.115095 CGAGAGGAATATACCTGATTTCGAAAC 59.885 40.741 13.81 8.03 40.73 2.78
977 2414 5.481105 TGATTTCGAAACACGTACCCTAAT 58.519 37.500 13.81 0.00 43.13 1.73
1005 2442 0.469705 TGTTGGTTGCTTCCATGGCT 60.470 50.000 6.96 0.00 37.33 4.75
1013 2450 4.794648 TTCCATGGCTTCCCCGCG 62.795 66.667 6.96 0.00 35.87 6.46
1058 2495 4.796231 CGCCTCCTCCGACGGTTG 62.796 72.222 14.79 8.16 0.00 3.77
1087 2524 2.032528 TTGTGGAGAAGCCGCCTG 59.967 61.111 0.00 0.00 46.97 4.85
1092 2544 1.153549 GGAGAAGCCGCCTGTACAG 60.154 63.158 16.34 16.34 0.00 2.74
1095 2547 1.450312 GAAGCCGCCTGTACAGCAT 60.450 57.895 17.86 0.00 0.00 3.79
1105 2557 0.817654 TGTACAGCATGACTCCTCCG 59.182 55.000 0.00 0.00 39.69 4.63
1135 2620 0.699577 ATCGGAGGAGGAGGAGGAGA 60.700 60.000 0.00 0.00 0.00 3.71
1136 2621 1.152839 CGGAGGAGGAGGAGGAGAC 60.153 68.421 0.00 0.00 0.00 3.36
1141 2626 1.826487 GAGGAGGAGGAGACGGAGC 60.826 68.421 0.00 0.00 0.00 4.70
1143 2628 2.419739 GGAGGAGGAGACGGAGCAC 61.420 68.421 0.00 0.00 0.00 4.40
1180 2665 3.256960 AGGCGGGGGACAATGTGT 61.257 61.111 0.00 0.00 0.00 3.72
1196 2681 0.719465 GTGTTGCCCGACGACAATAG 59.281 55.000 0.00 0.00 44.48 1.73
1228 2713 2.661537 CACTGCAAGGCGACACGA 60.662 61.111 0.00 0.00 39.30 4.35
1291 2776 0.900182 CCAACCCAAGAAGAAGGCCC 60.900 60.000 0.00 0.00 0.00 5.80
1317 2803 1.228124 CCAACCTGTCGAGCCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
1365 2851 1.134280 CCGAGGATGCAATCTGAGGTT 60.134 52.381 0.00 0.00 44.71 3.50
1402 2918 3.526931 TTAAGAGCGATGTGGAGAAGG 57.473 47.619 0.00 0.00 0.00 3.46
1495 3011 2.372172 GGGTTCTTCAAGTCTCCCTTCA 59.628 50.000 6.94 0.00 32.89 3.02
1552 3068 2.799562 GCCAAACTTCAGAAGCAACACC 60.800 50.000 10.33 0.00 0.00 4.16
1586 3102 3.620061 CATCGATGCAGCTGGGTAT 57.380 52.632 17.12 0.00 0.00 2.73
1603 3119 4.412199 TGGGTATTATCAGAAAGGAGGTGG 59.588 45.833 0.00 0.00 0.00 4.61
1608 3124 2.978156 TCAGAAAGGAGGTGGCAAAT 57.022 45.000 0.00 0.00 0.00 2.32
1623 3139 4.632688 GTGGCAAATTCCCTCATCAATTTG 59.367 41.667 11.18 11.18 46.23 2.32
1648 3164 6.684979 GCTCGACTGAAGTCACGATATATATG 59.315 42.308 10.88 0.00 44.99 1.78
1649 3165 7.624554 GCTCGACTGAAGTCACGATATATATGT 60.625 40.741 10.88 0.00 44.99 2.29
1650 3166 8.767478 TCGACTGAAGTCACGATATATATGTA 57.233 34.615 10.88 0.00 44.99 2.29
1651 3167 9.379791 TCGACTGAAGTCACGATATATATGTAT 57.620 33.333 10.88 0.00 44.99 2.29
1652 3168 9.427127 CGACTGAAGTCACGATATATATGTATG 57.573 37.037 10.88 0.00 44.99 2.39
1747 3280 5.500234 TCTAGTTATGCTTGCATTGGTCTT 58.500 37.500 13.52 0.00 0.00 3.01
1749 3282 5.567138 AGTTATGCTTGCATTGGTCTTAC 57.433 39.130 13.52 2.29 0.00 2.34
1781 3315 5.177327 TGTCCGGAATTAGTTTCGTTGTTAC 59.823 40.000 5.23 0.00 34.43 2.50
1799 3333 0.107017 ACCTCGCAATGGGGAATCAG 60.107 55.000 0.00 0.00 35.34 2.90
1892 3436 7.220030 TGCTCATTTAGAATTCAGATCTACCC 58.780 38.462 8.44 0.00 0.00 3.69
1939 3483 6.126863 ACCAACTTTCTCAGGATATGTGAA 57.873 37.500 0.00 0.00 39.12 3.18
1943 3487 2.492019 TCTCAGGATATGTGAACGCG 57.508 50.000 3.53 3.53 0.00 6.01
1973 3517 8.500753 TTGTTGTCTAACATATAACATCCACC 57.499 34.615 0.00 0.00 45.56 4.61
1974 3518 7.625469 TGTTGTCTAACATATAACATCCACCA 58.375 34.615 0.00 0.00 41.66 4.17
1975 3519 8.271458 TGTTGTCTAACATATAACATCCACCAT 58.729 33.333 0.00 0.00 41.66 3.55
2197 3890 9.685276 AATTAGTATGTTTCCATTCTGTGATGA 57.315 29.630 0.00 0.00 31.88 2.92
2205 3898 7.492020 TGTTTCCATTCTGTGATGAAAACTTTG 59.508 33.333 8.85 0.00 0.00 2.77
2308 4003 8.950210 TGATTGATCCAGTCTTAGATTTGTTTC 58.050 33.333 0.00 0.00 0.00 2.78
2314 4009 6.003950 CCAGTCTTAGATTTGTTTCTTCCCA 58.996 40.000 0.00 0.00 0.00 4.37
2328 4023 0.464554 TTCCCAATGTGTGTGTGCGA 60.465 50.000 0.00 0.00 0.00 5.10
2355 4050 5.509832 AATGCATCTTATATCCTGGCTCA 57.490 39.130 0.00 0.00 0.00 4.26
2364 4059 6.782494 TCTTATATCCTGGCTCACTCATGTTA 59.218 38.462 0.00 0.00 0.00 2.41
2444 4144 9.725019 AACAATCTAGTGATGTATCAGTTTTCA 57.275 29.630 7.45 0.00 40.68 2.69
2504 4208 4.271533 TGCGTTCAGTTTGTAGGTGTTAAG 59.728 41.667 0.00 0.00 0.00 1.85
2536 4240 9.567776 TTATCAAGAAACATAAGGAAGACAACA 57.432 29.630 0.00 0.00 0.00 3.33
2545 4306 2.408565 AGGAAGACAACAGAAGTGGGA 58.591 47.619 0.00 0.00 0.00 4.37
2584 4345 6.027749 CCACAATTCGCTAGTTGGTTATTTC 58.972 40.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.060038 CTTGCTTGGCCGGGCTTG 62.060 66.667 29.87 21.26 0.00 4.01
9 10 0.955428 TACTTGCTCGCCTTGCTTGG 60.955 55.000 0.00 0.00 0.00 3.61
10 11 1.089920 ATACTTGCTCGCCTTGCTTG 58.910 50.000 0.00 0.00 0.00 4.01
11 12 1.089920 CATACTTGCTCGCCTTGCTT 58.910 50.000 0.00 0.00 0.00 3.91
12 13 0.036010 ACATACTTGCTCGCCTTGCT 60.036 50.000 0.00 0.00 0.00 3.91
13 14 0.097674 CACATACTTGCTCGCCTTGC 59.902 55.000 0.00 0.00 0.00 4.01
14 15 0.097674 GCACATACTTGCTCGCCTTG 59.902 55.000 0.00 0.00 39.59 3.61
15 16 1.361668 CGCACATACTTGCTCGCCTT 61.362 55.000 0.00 0.00 40.62 4.35
16 17 1.811266 CGCACATACTTGCTCGCCT 60.811 57.895 0.00 0.00 40.62 5.52
17 18 2.100631 ACGCACATACTTGCTCGCC 61.101 57.895 0.00 0.00 40.62 5.54
18 19 1.059369 CACGCACATACTTGCTCGC 59.941 57.895 0.00 0.00 40.62 5.03
19 20 0.093535 CACACGCACATACTTGCTCG 59.906 55.000 0.00 0.00 40.62 5.03
20 21 0.443869 CCACACGCACATACTTGCTC 59.556 55.000 0.00 0.00 40.62 4.26
21 22 0.250295 ACCACACGCACATACTTGCT 60.250 50.000 0.00 0.00 40.62 3.91
22 23 0.165944 GACCACACGCACATACTTGC 59.834 55.000 0.00 0.00 39.28 4.01
23 24 1.795768 AGACCACACGCACATACTTG 58.204 50.000 0.00 0.00 0.00 3.16
24 25 2.224185 TGAAGACCACACGCACATACTT 60.224 45.455 0.00 0.00 0.00 2.24
25 26 1.343142 TGAAGACCACACGCACATACT 59.657 47.619 0.00 0.00 0.00 2.12
26 27 1.790755 TGAAGACCACACGCACATAC 58.209 50.000 0.00 0.00 0.00 2.39
27 28 2.535012 TTGAAGACCACACGCACATA 57.465 45.000 0.00 0.00 0.00 2.29
28 29 1.896220 ATTGAAGACCACACGCACAT 58.104 45.000 0.00 0.00 0.00 3.21
29 30 1.674359 AATTGAAGACCACACGCACA 58.326 45.000 0.00 0.00 0.00 4.57
30 31 2.290641 AGAAATTGAAGACCACACGCAC 59.709 45.455 0.00 0.00 0.00 5.34
31 32 2.548057 GAGAAATTGAAGACCACACGCA 59.452 45.455 0.00 0.00 0.00 5.24
32 33 2.808543 AGAGAAATTGAAGACCACACGC 59.191 45.455 0.00 0.00 0.00 5.34
33 34 4.151335 CAGAGAGAAATTGAAGACCACACG 59.849 45.833 0.00 0.00 0.00 4.49
34 35 5.059833 ACAGAGAGAAATTGAAGACCACAC 58.940 41.667 0.00 0.00 0.00 3.82
35 36 5.296151 ACAGAGAGAAATTGAAGACCACA 57.704 39.130 0.00 0.00 0.00 4.17
36 37 7.064016 GTGATACAGAGAGAAATTGAAGACCAC 59.936 40.741 0.00 0.00 0.00 4.16
37 38 7.099764 GTGATACAGAGAGAAATTGAAGACCA 58.900 38.462 0.00 0.00 0.00 4.02
38 39 7.099764 TGTGATACAGAGAGAAATTGAAGACC 58.900 38.462 0.00 0.00 0.00 3.85
39 40 8.715191 ATGTGATACAGAGAGAAATTGAAGAC 57.285 34.615 0.00 0.00 0.00 3.01
40 41 8.534496 TGATGTGATACAGAGAGAAATTGAAGA 58.466 33.333 0.00 0.00 0.00 2.87
41 42 8.713737 TGATGTGATACAGAGAGAAATTGAAG 57.286 34.615 0.00 0.00 0.00 3.02
42 43 9.676861 AATGATGTGATACAGAGAGAAATTGAA 57.323 29.630 0.00 0.00 0.00 2.69
47 48 9.591792 CACTTAATGATGTGATACAGAGAGAAA 57.408 33.333 0.00 0.00 36.38 2.52
48 49 8.753133 ACACTTAATGATGTGATACAGAGAGAA 58.247 33.333 3.12 0.00 37.59 2.87
49 50 8.298729 ACACTTAATGATGTGATACAGAGAGA 57.701 34.615 3.12 0.00 37.59 3.10
60 61 9.035607 GTTATCTAGACCACACTTAATGATGTG 57.964 37.037 0.00 7.39 44.79 3.21
61 62 8.204836 GGTTATCTAGACCACACTTAATGATGT 58.795 37.037 0.00 0.00 37.14 3.06
62 63 7.657761 GGGTTATCTAGACCACACTTAATGATG 59.342 40.741 0.00 0.00 38.98 3.07
63 64 7.347222 TGGGTTATCTAGACCACACTTAATGAT 59.653 37.037 0.00 0.00 38.98 2.45
64 65 6.670464 TGGGTTATCTAGACCACACTTAATGA 59.330 38.462 0.00 0.00 38.98 2.57
65 66 6.884832 TGGGTTATCTAGACCACACTTAATG 58.115 40.000 0.00 0.00 38.98 1.90
74 75 7.589081 TCTTATGTAGTGGGTTATCTAGACCA 58.411 38.462 0.00 0.00 38.98 4.02
75 76 8.524487 CATCTTATGTAGTGGGTTATCTAGACC 58.476 40.741 0.00 0.00 36.41 3.85
76 77 8.524487 CCATCTTATGTAGTGGGTTATCTAGAC 58.476 40.741 0.00 0.00 0.00 2.59
77 78 8.232412 ACCATCTTATGTAGTGGGTTATCTAGA 58.768 37.037 0.00 0.00 36.05 2.43
78 79 8.423906 ACCATCTTATGTAGTGGGTTATCTAG 57.576 38.462 0.00 0.00 36.05 2.43
79 80 8.792830 AACCATCTTATGTAGTGGGTTATCTA 57.207 34.615 0.00 0.00 38.60 1.98
80 81 7.691993 AACCATCTTATGTAGTGGGTTATCT 57.308 36.000 0.00 0.00 38.60 1.98
81 82 9.841295 TTAAACCATCTTATGTAGTGGGTTATC 57.159 33.333 1.98 0.00 41.91 1.75
82 83 9.623000 GTTAAACCATCTTATGTAGTGGGTTAT 57.377 33.333 1.98 0.00 41.91 1.89
83 84 8.048514 GGTTAAACCATCTTATGTAGTGGGTTA 58.951 37.037 0.00 0.00 39.75 2.85
84 85 6.888088 GGTTAAACCATCTTATGTAGTGGGTT 59.112 38.462 0.00 0.00 43.63 4.11
85 86 6.420638 GGTTAAACCATCTTATGTAGTGGGT 58.579 40.000 0.00 0.00 38.42 4.51
86 87 5.826208 GGGTTAAACCATCTTATGTAGTGGG 59.174 44.000 4.11 0.00 41.02 4.61
87 88 6.659824 AGGGTTAAACCATCTTATGTAGTGG 58.340 40.000 13.24 0.00 41.02 4.00
88 89 8.047310 AGAAGGGTTAAACCATCTTATGTAGTG 58.953 37.037 11.56 0.00 41.02 2.74
89 90 8.159229 AGAAGGGTTAAACCATCTTATGTAGT 57.841 34.615 11.56 0.00 41.02 2.73
90 91 9.110502 GAAGAAGGGTTAAACCATCTTATGTAG 57.889 37.037 25.86 0.00 42.37 2.74
91 92 8.050930 GGAAGAAGGGTTAAACCATCTTATGTA 58.949 37.037 25.86 0.00 42.37 2.29
92 93 6.890268 GGAAGAAGGGTTAAACCATCTTATGT 59.110 38.462 25.86 8.07 42.37 2.29
93 94 6.889722 TGGAAGAAGGGTTAAACCATCTTATG 59.110 38.462 25.86 0.00 42.37 1.90
94 95 6.890268 GTGGAAGAAGGGTTAAACCATCTTAT 59.110 38.462 25.86 9.12 42.37 1.73
95 96 6.045106 AGTGGAAGAAGGGTTAAACCATCTTA 59.955 38.462 25.86 11.99 42.37 2.10
96 97 5.077564 GTGGAAGAAGGGTTAAACCATCTT 58.922 41.667 26.05 26.05 43.89 2.40
97 98 4.354087 AGTGGAAGAAGGGTTAAACCATCT 59.646 41.667 11.56 11.56 41.02 2.90
98 99 4.663334 AGTGGAAGAAGGGTTAAACCATC 58.337 43.478 13.24 9.81 41.02 3.51
99 100 4.741928 AGTGGAAGAAGGGTTAAACCAT 57.258 40.909 13.24 0.00 41.02 3.55
100 101 4.661709 ACTAGTGGAAGAAGGGTTAAACCA 59.338 41.667 13.24 0.00 41.02 3.67
101 102 5.001874 CACTAGTGGAAGAAGGGTTAAACC 58.998 45.833 15.49 0.00 37.60 3.27
117 118 7.827236 TCAAATTTTAGTCCCATACCACTAGTG 59.173 37.037 16.34 16.34 0.00 2.74
118 119 7.924541 TCAAATTTTAGTCCCATACCACTAGT 58.075 34.615 0.00 0.00 0.00 2.57
119 120 7.012421 GCTCAAATTTTAGTCCCATACCACTAG 59.988 40.741 1.55 0.00 0.00 2.57
120 121 6.826741 GCTCAAATTTTAGTCCCATACCACTA 59.173 38.462 1.55 0.00 0.00 2.74
121 122 5.652452 GCTCAAATTTTAGTCCCATACCACT 59.348 40.000 1.55 0.00 0.00 4.00
122 123 5.417580 TGCTCAAATTTTAGTCCCATACCAC 59.582 40.000 1.55 0.00 0.00 4.16
123 124 5.417580 GTGCTCAAATTTTAGTCCCATACCA 59.582 40.000 1.55 0.00 0.00 3.25
124 125 5.163550 GGTGCTCAAATTTTAGTCCCATACC 60.164 44.000 1.55 0.00 0.00 2.73
125 126 5.417580 TGGTGCTCAAATTTTAGTCCCATAC 59.582 40.000 7.61 0.00 0.00 2.39
126 127 5.417580 GTGGTGCTCAAATTTTAGTCCCATA 59.582 40.000 12.37 0.00 0.00 2.74
127 128 4.220602 GTGGTGCTCAAATTTTAGTCCCAT 59.779 41.667 12.37 0.00 0.00 4.00
128 129 3.572255 GTGGTGCTCAAATTTTAGTCCCA 59.428 43.478 7.61 7.61 0.00 4.37
129 130 3.056821 GGTGGTGCTCAAATTTTAGTCCC 60.057 47.826 1.55 2.81 0.00 4.46
130 131 3.826729 AGGTGGTGCTCAAATTTTAGTCC 59.173 43.478 1.55 5.39 0.00 3.85
131 132 5.472137 TGTAGGTGGTGCTCAAATTTTAGTC 59.528 40.000 1.55 0.00 0.00 2.59
132 133 5.381757 TGTAGGTGGTGCTCAAATTTTAGT 58.618 37.500 1.55 0.00 0.00 2.24
133 134 5.106157 CCTGTAGGTGGTGCTCAAATTTTAG 60.106 44.000 0.00 0.00 0.00 1.85
134 135 4.764823 CCTGTAGGTGGTGCTCAAATTTTA 59.235 41.667 0.00 0.00 0.00 1.52
135 136 3.573967 CCTGTAGGTGGTGCTCAAATTTT 59.426 43.478 0.00 0.00 0.00 1.82
136 137 3.157087 CCTGTAGGTGGTGCTCAAATTT 58.843 45.455 0.00 0.00 0.00 1.82
137 138 2.555227 CCCTGTAGGTGGTGCTCAAATT 60.555 50.000 0.00 0.00 0.00 1.82
138 139 1.004745 CCCTGTAGGTGGTGCTCAAAT 59.995 52.381 0.00 0.00 0.00 2.32
139 140 0.400213 CCCTGTAGGTGGTGCTCAAA 59.600 55.000 0.00 0.00 0.00 2.69
140 141 1.488705 CCCCTGTAGGTGGTGCTCAA 61.489 60.000 0.00 0.00 0.00 3.02
141 142 1.918293 CCCCTGTAGGTGGTGCTCA 60.918 63.158 0.00 0.00 0.00 4.26
142 143 1.900545 GACCCCTGTAGGTGGTGCTC 61.901 65.000 13.61 0.11 41.42 4.26
143 144 1.918800 GACCCCTGTAGGTGGTGCT 60.919 63.158 13.61 0.00 41.42 4.40
144 145 1.489560 AAGACCCCTGTAGGTGGTGC 61.490 60.000 13.61 7.44 41.42 5.01
145 146 0.613777 GAAGACCCCTGTAGGTGGTG 59.386 60.000 13.61 0.00 41.42 4.17
146 147 0.546988 GGAAGACCCCTGTAGGTGGT 60.547 60.000 9.86 9.86 41.42 4.16
147 148 0.252742 AGGAAGACCCCTGTAGGTGG 60.253 60.000 0.00 1.02 41.42 4.61
148 149 1.657804 AAGGAAGACCCCTGTAGGTG 58.342 55.000 0.00 0.00 41.42 4.00
149 150 2.658489 TCTAAGGAAGACCCCTGTAGGT 59.342 50.000 0.00 0.00 45.12 3.08
150 151 3.399952 TCTAAGGAAGACCCCTGTAGG 57.600 52.381 0.00 0.00 36.49 3.18
151 152 5.959583 ATTTCTAAGGAAGACCCCTGTAG 57.040 43.478 0.00 0.00 36.49 2.74
152 153 5.550403 ACAATTTCTAAGGAAGACCCCTGTA 59.450 40.000 0.00 0.00 36.49 2.74
153 154 4.354087 ACAATTTCTAAGGAAGACCCCTGT 59.646 41.667 0.00 0.00 36.49 4.00
154 155 4.923415 ACAATTTCTAAGGAAGACCCCTG 58.077 43.478 0.00 0.00 36.49 4.45
155 156 5.550403 TGTACAATTTCTAAGGAAGACCCCT 59.450 40.000 0.00 0.00 38.42 4.79
156 157 5.812286 TGTACAATTTCTAAGGAAGACCCC 58.188 41.667 0.00 0.00 36.73 4.95
157 158 6.708285 TCTGTACAATTTCTAAGGAAGACCC 58.292 40.000 0.00 0.00 36.73 4.46
158 159 6.819146 CCTCTGTACAATTTCTAAGGAAGACC 59.181 42.308 0.00 0.00 32.51 3.85
159 160 7.387643 ACCTCTGTACAATTTCTAAGGAAGAC 58.612 38.462 0.00 0.00 32.51 3.01
160 161 7.554959 ACCTCTGTACAATTTCTAAGGAAGA 57.445 36.000 0.00 0.00 32.61 2.87
161 162 9.372369 CTAACCTCTGTACAATTTCTAAGGAAG 57.628 37.037 0.00 0.00 32.61 3.46
162 163 8.319146 CCTAACCTCTGTACAATTTCTAAGGAA 58.681 37.037 0.00 0.00 0.00 3.36
163 164 7.580882 GCCTAACCTCTGTACAATTTCTAAGGA 60.581 40.741 0.00 0.00 0.00 3.36
164 165 6.539103 GCCTAACCTCTGTACAATTTCTAAGG 59.461 42.308 0.00 0.52 0.00 2.69
165 166 6.539103 GGCCTAACCTCTGTACAATTTCTAAG 59.461 42.308 0.00 0.00 34.51 2.18
166 167 6.412214 GGCCTAACCTCTGTACAATTTCTAA 58.588 40.000 0.00 0.00 34.51 2.10
167 168 5.104652 GGGCCTAACCTCTGTACAATTTCTA 60.105 44.000 0.84 0.00 39.10 2.10
168 169 4.324331 GGGCCTAACCTCTGTACAATTTCT 60.324 45.833 0.84 0.00 39.10 2.52
169 170 3.945921 GGGCCTAACCTCTGTACAATTTC 59.054 47.826 0.84 0.00 39.10 2.17
170 171 3.332485 TGGGCCTAACCTCTGTACAATTT 59.668 43.478 4.53 0.00 39.10 1.82
171 172 2.916934 TGGGCCTAACCTCTGTACAATT 59.083 45.455 4.53 0.00 39.10 2.32
172 173 2.557869 TGGGCCTAACCTCTGTACAAT 58.442 47.619 4.53 0.00 39.10 2.71
173 174 2.032965 TGGGCCTAACCTCTGTACAA 57.967 50.000 4.53 0.00 39.10 2.41
174 175 2.263895 ATGGGCCTAACCTCTGTACA 57.736 50.000 4.53 0.00 39.10 2.90
175 176 4.976540 ATAATGGGCCTAACCTCTGTAC 57.023 45.455 4.53 0.00 39.10 2.90
176 177 5.670361 AGAAATAATGGGCCTAACCTCTGTA 59.330 40.000 4.53 0.00 39.10 2.74
177 178 4.478686 AGAAATAATGGGCCTAACCTCTGT 59.521 41.667 4.53 0.00 39.10 3.41
178 179 5.053978 AGAAATAATGGGCCTAACCTCTG 57.946 43.478 4.53 0.00 39.10 3.35
179 180 6.159751 TGTTAGAAATAATGGGCCTAACCTCT 59.840 38.462 4.53 2.54 38.73 3.69
180 181 6.362248 TGTTAGAAATAATGGGCCTAACCTC 58.638 40.000 4.53 0.00 38.73 3.85
181 182 6.069029 ACTGTTAGAAATAATGGGCCTAACCT 60.069 38.462 4.53 0.00 38.73 3.50
182 183 6.127101 ACTGTTAGAAATAATGGGCCTAACC 58.873 40.000 4.53 0.00 38.73 2.85
183 184 8.208903 TCTACTGTTAGAAATAATGGGCCTAAC 58.791 37.037 4.53 3.03 39.48 2.34
184 185 8.326765 TCTACTGTTAGAAATAATGGGCCTAA 57.673 34.615 4.53 0.00 30.88 2.69
185 186 7.924358 TCTACTGTTAGAAATAATGGGCCTA 57.076 36.000 4.53 0.00 30.88 3.93
186 187 6.824958 TCTACTGTTAGAAATAATGGGCCT 57.175 37.500 4.53 0.00 30.88 5.19
187 188 6.018180 CGTTCTACTGTTAGAAATAATGGGCC 60.018 42.308 0.00 0.00 44.35 5.80
188 189 6.759827 TCGTTCTACTGTTAGAAATAATGGGC 59.240 38.462 0.00 0.00 44.35 5.36
189 190 8.195436 TCTCGTTCTACTGTTAGAAATAATGGG 58.805 37.037 0.00 0.00 44.35 4.00
190 191 9.582431 TTCTCGTTCTACTGTTAGAAATAATGG 57.418 33.333 0.00 0.00 44.35 3.16
193 194 9.837525 GAGTTCTCGTTCTACTGTTAGAAATAA 57.162 33.333 0.00 0.00 44.35 1.40
194 195 8.457261 GGAGTTCTCGTTCTACTGTTAGAAATA 58.543 37.037 0.00 0.00 44.35 1.40
195 196 7.177041 AGGAGTTCTCGTTCTACTGTTAGAAAT 59.823 37.037 0.00 0.00 44.35 2.17
196 197 6.489361 AGGAGTTCTCGTTCTACTGTTAGAAA 59.511 38.462 0.00 0.00 44.35 2.52
197 198 6.002704 AGGAGTTCTCGTTCTACTGTTAGAA 58.997 40.000 0.00 0.00 41.27 2.10
198 199 5.558818 AGGAGTTCTCGTTCTACTGTTAGA 58.441 41.667 0.00 0.00 32.05 2.10
199 200 5.163733 GGAGGAGTTCTCGTTCTACTGTTAG 60.164 48.000 0.00 0.00 43.34 2.34
200 201 4.699257 GGAGGAGTTCTCGTTCTACTGTTA 59.301 45.833 0.00 0.00 43.34 2.41
201 202 3.506844 GGAGGAGTTCTCGTTCTACTGTT 59.493 47.826 0.00 0.00 43.34 3.16
202 203 3.083293 GGAGGAGTTCTCGTTCTACTGT 58.917 50.000 0.00 0.00 43.34 3.55
203 204 2.096174 CGGAGGAGTTCTCGTTCTACTG 59.904 54.545 0.00 0.00 43.34 2.74
204 205 2.027377 TCGGAGGAGTTCTCGTTCTACT 60.027 50.000 0.00 0.00 43.34 2.57
205 206 2.354259 TCGGAGGAGTTCTCGTTCTAC 58.646 52.381 0.00 0.00 43.34 2.59
206 207 2.746362 GTTCGGAGGAGTTCTCGTTCTA 59.254 50.000 0.00 0.00 43.34 2.10
207 208 1.540707 GTTCGGAGGAGTTCTCGTTCT 59.459 52.381 0.00 0.00 43.34 3.01
208 209 1.540707 AGTTCGGAGGAGTTCTCGTTC 59.459 52.381 0.00 0.00 43.34 3.95
209 210 1.618487 AGTTCGGAGGAGTTCTCGTT 58.382 50.000 0.00 0.00 43.34 3.85
210 211 2.083002 GTAGTTCGGAGGAGTTCTCGT 58.917 52.381 0.00 0.00 43.34 4.18
211 212 1.401199 GGTAGTTCGGAGGAGTTCTCG 59.599 57.143 0.00 0.00 43.34 4.04
212 213 1.750206 GGGTAGTTCGGAGGAGTTCTC 59.250 57.143 0.00 0.00 41.71 2.87
213 214 1.849977 GGGTAGTTCGGAGGAGTTCT 58.150 55.000 0.00 0.00 0.00 3.01
214 215 0.455005 CGGGTAGTTCGGAGGAGTTC 59.545 60.000 0.00 0.00 0.00 3.01
215 216 0.038744 TCGGGTAGTTCGGAGGAGTT 59.961 55.000 0.00 0.00 0.00 3.01
216 217 0.258194 ATCGGGTAGTTCGGAGGAGT 59.742 55.000 0.00 0.00 0.00 3.85
217 218 2.267174 TATCGGGTAGTTCGGAGGAG 57.733 55.000 0.00 0.00 0.00 3.69
218 219 2.965671 ATATCGGGTAGTTCGGAGGA 57.034 50.000 0.00 0.00 0.00 3.71
219 220 3.319972 TCAAATATCGGGTAGTTCGGAGG 59.680 47.826 0.00 0.00 0.00 4.30
220 221 4.202080 TGTCAAATATCGGGTAGTTCGGAG 60.202 45.833 0.00 0.00 0.00 4.63
221 222 3.700539 TGTCAAATATCGGGTAGTTCGGA 59.299 43.478 0.00 0.00 0.00 4.55
222 223 4.049186 CTGTCAAATATCGGGTAGTTCGG 58.951 47.826 0.00 0.00 0.00 4.30
223 224 4.049186 CCTGTCAAATATCGGGTAGTTCG 58.951 47.826 0.00 0.00 0.00 3.95
224 225 3.808174 GCCTGTCAAATATCGGGTAGTTC 59.192 47.826 0.00 0.00 33.07 3.01
225 226 3.454812 AGCCTGTCAAATATCGGGTAGTT 59.545 43.478 0.00 0.00 33.07 2.24
226 227 3.039011 AGCCTGTCAAATATCGGGTAGT 58.961 45.455 0.00 0.00 33.07 2.73
227 228 3.753294 AGCCTGTCAAATATCGGGTAG 57.247 47.619 0.00 0.00 33.07 3.18
228 229 3.452990 TCAAGCCTGTCAAATATCGGGTA 59.547 43.478 0.00 0.00 33.07 3.69
229 230 2.238646 TCAAGCCTGTCAAATATCGGGT 59.761 45.455 0.00 0.00 33.07 5.28
230 231 2.917933 TCAAGCCTGTCAAATATCGGG 58.082 47.619 0.00 0.00 0.00 5.14
231 232 4.963276 TTTCAAGCCTGTCAAATATCGG 57.037 40.909 0.00 0.00 0.00 4.18
232 233 6.634436 GCTATTTTCAAGCCTGTCAAATATCG 59.366 38.462 4.12 0.00 33.73 2.92
233 234 7.483307 TGCTATTTTCAAGCCTGTCAAATATC 58.517 34.615 0.00 2.22 39.30 1.63
234 235 7.408756 TGCTATTTTCAAGCCTGTCAAATAT 57.591 32.000 0.00 0.00 39.30 1.28
235 236 6.625740 GCTGCTATTTTCAAGCCTGTCAAATA 60.626 38.462 0.00 3.81 39.30 1.40
236 237 5.717119 CTGCTATTTTCAAGCCTGTCAAAT 58.283 37.500 0.00 2.28 39.30 2.32
237 238 4.559300 GCTGCTATTTTCAAGCCTGTCAAA 60.559 41.667 0.00 0.00 39.30 2.69
238 239 3.057315 GCTGCTATTTTCAAGCCTGTCAA 60.057 43.478 0.00 0.00 39.30 3.18
239 240 2.489329 GCTGCTATTTTCAAGCCTGTCA 59.511 45.455 0.00 0.00 39.30 3.58
240 241 2.159324 GGCTGCTATTTTCAAGCCTGTC 60.159 50.000 5.30 0.00 39.30 3.51
241 242 1.821136 GGCTGCTATTTTCAAGCCTGT 59.179 47.619 5.30 0.00 39.30 4.00
242 243 1.820519 TGGCTGCTATTTTCAAGCCTG 59.179 47.619 13.27 0.00 42.41 4.85
243 244 1.821136 GTGGCTGCTATTTTCAAGCCT 59.179 47.619 13.27 0.00 42.41 4.58
244 245 1.134995 GGTGGCTGCTATTTTCAAGCC 60.135 52.381 5.59 5.59 39.30 4.35
245 246 1.134995 GGGTGGCTGCTATTTTCAAGC 60.135 52.381 0.00 0.00 40.50 4.01
246 247 2.170166 TGGGTGGCTGCTATTTTCAAG 58.830 47.619 0.00 0.00 0.00 3.02
247 248 2.300956 TGGGTGGCTGCTATTTTCAA 57.699 45.000 0.00 0.00 0.00 2.69
248 249 2.378038 GATGGGTGGCTGCTATTTTCA 58.622 47.619 0.00 0.00 0.00 2.69
249 250 1.334869 CGATGGGTGGCTGCTATTTTC 59.665 52.381 0.00 0.00 0.00 2.29
250 251 1.392589 CGATGGGTGGCTGCTATTTT 58.607 50.000 0.00 0.00 0.00 1.82
251 252 0.466189 CCGATGGGTGGCTGCTATTT 60.466 55.000 0.00 0.00 0.00 1.40
252 253 1.149174 CCGATGGGTGGCTGCTATT 59.851 57.895 0.00 0.00 0.00 1.73
253 254 2.831770 CCGATGGGTGGCTGCTAT 59.168 61.111 0.00 0.00 0.00 2.97
260 261 4.873129 CTCGTCGCCGATGGGTGG 62.873 72.222 6.46 0.00 44.27 4.61
263 264 4.812476 TTGCTCGTCGCCGATGGG 62.812 66.667 6.46 3.74 43.27 4.00
264 265 2.586079 ATTGCTCGTCGCCGATGG 60.586 61.111 6.46 0.00 43.27 3.51
265 266 2.622629 CATTGCTCGTCGCCGATG 59.377 61.111 0.00 0.00 43.27 3.84
266 267 2.586079 CCATTGCTCGTCGCCGAT 60.586 61.111 0.00 0.00 43.27 4.18
270 271 4.166011 GTGGCCATTGCTCGTCGC 62.166 66.667 9.72 0.00 37.74 5.19
271 272 3.853330 CGTGGCCATTGCTCGTCG 61.853 66.667 9.72 0.00 37.74 5.12
272 273 2.434185 TCGTGGCCATTGCTCGTC 60.434 61.111 9.72 0.00 37.74 4.20
273 274 2.434884 CTCGTGGCCATTGCTCGT 60.435 61.111 9.72 0.00 37.74 4.18
274 275 1.298157 TTTCTCGTGGCCATTGCTCG 61.298 55.000 9.72 7.70 37.74 5.03
275 276 0.881118 TTTTCTCGTGGCCATTGCTC 59.119 50.000 9.72 0.00 37.74 4.26
276 277 1.203052 CATTTTCTCGTGGCCATTGCT 59.797 47.619 9.72 0.00 37.74 3.91
277 278 1.632422 CATTTTCTCGTGGCCATTGC 58.368 50.000 9.72 0.00 0.00 3.56
278 279 1.632422 GCATTTTCTCGTGGCCATTG 58.368 50.000 9.72 4.89 0.00 2.82
279 280 0.532115 GGCATTTTCTCGTGGCCATT 59.468 50.000 9.72 0.00 44.01 3.16
280 281 1.656818 CGGCATTTTCTCGTGGCCAT 61.657 55.000 9.72 0.00 44.82 4.40
281 282 2.331893 CGGCATTTTCTCGTGGCCA 61.332 57.895 0.00 0.00 44.82 5.36
282 283 2.485122 CGGCATTTTCTCGTGGCC 59.515 61.111 0.00 0.00 41.20 5.36
283 284 2.485122 CCGGCATTTTCTCGTGGC 59.515 61.111 0.00 0.00 37.53 5.01
284 285 2.485122 GCCGGCATTTTCTCGTGG 59.515 61.111 24.80 0.00 0.00 4.94
285 286 1.656818 ATGGCCGGCATTTTCTCGTG 61.657 55.000 30.85 0.00 0.00 4.35
286 287 1.376609 GATGGCCGGCATTTTCTCGT 61.377 55.000 30.85 10.20 0.00 4.18
287 288 1.097547 AGATGGCCGGCATTTTCTCG 61.098 55.000 30.85 0.00 0.00 4.04
288 289 1.106285 AAGATGGCCGGCATTTTCTC 58.894 50.000 30.85 14.22 0.00 2.87
289 290 0.819582 CAAGATGGCCGGCATTTTCT 59.180 50.000 30.85 20.01 0.00 2.52
290 291 0.807275 GCAAGATGGCCGGCATTTTC 60.807 55.000 30.85 18.03 0.00 2.29
291 292 1.218854 GCAAGATGGCCGGCATTTT 59.781 52.632 30.85 17.39 0.00 1.82
292 293 2.724273 GGCAAGATGGCCGGCATTT 61.724 57.895 30.85 12.28 45.40 2.32
293 294 3.149648 GGCAAGATGGCCGGCATT 61.150 61.111 30.85 15.33 45.40 3.56
303 304 0.322816 AGCGACCACAATGGCAAGAT 60.323 50.000 0.00 0.00 42.67 2.40
307 308 2.918345 GCAAGCGACCACAATGGCA 61.918 57.895 0.00 0.00 42.67 4.92
308 309 2.126346 GCAAGCGACCACAATGGC 60.126 61.111 0.00 0.00 42.67 4.40
316 317 1.154035 CGATTTTGGGCAAGCGACC 60.154 57.895 0.00 0.00 42.99 4.79
318 319 1.305219 CCTCGATTTTGGGCAAGCGA 61.305 55.000 0.00 0.00 0.00 4.93
354 355 0.391263 CCTCCACCTTTCCGTGCTAC 60.391 60.000 0.00 0.00 32.10 3.58
361 362 2.553247 CCTTGTTCTCCTCCACCTTTCC 60.553 54.545 0.00 0.00 0.00 3.13
383 384 3.244735 TGCATGGTTGTGCCTACTCTTAA 60.245 43.478 0.00 0.00 44.43 1.85
384 385 2.304470 TGCATGGTTGTGCCTACTCTTA 59.696 45.455 0.00 0.00 44.43 2.10
385 386 1.073763 TGCATGGTTGTGCCTACTCTT 59.926 47.619 0.00 0.00 44.43 2.85
396 397 2.772568 TTTTCGTCTGTGCATGGTTG 57.227 45.000 0.00 0.00 0.00 3.77
450 451 1.161843 TTTTTGATCGCCCGAAGTCC 58.838 50.000 0.00 0.00 0.00 3.85
513 514 1.226267 CGCTCTCACTCACTCTCGC 60.226 63.158 0.00 0.00 0.00 5.03
520 521 1.379176 CCCCTCTCGCTCTCACTCA 60.379 63.158 0.00 0.00 0.00 3.41
558 559 3.612247 CTCTGCTCCCACCAACCGG 62.612 68.421 0.00 0.00 38.77 5.28
581 586 2.242926 GCAGGCCTCCTTTTCTTTCTT 58.757 47.619 0.00 0.00 0.00 2.52
585 590 1.553706 CATGCAGGCCTCCTTTTCTT 58.446 50.000 0.00 0.00 0.00 2.52
594 599 3.736224 CACTCCCCATGCAGGCCT 61.736 66.667 0.00 0.00 35.39 5.19
614 619 1.299648 CCATCGCCCTTCTGGAACA 59.700 57.895 0.00 0.00 35.39 3.18
620 625 0.839946 ATTGTAGCCATCGCCCTTCT 59.160 50.000 0.00 0.00 34.57 2.85
667 674 4.305989 CAACTCTTAAAGCCAGTTGCAA 57.694 40.909 0.00 0.00 44.83 4.08
685 693 2.507547 TCCATCGCGGCGTACAAC 60.508 61.111 22.90 0.00 33.14 3.32
687 695 4.840288 CGTCCATCGCGGCGTACA 62.840 66.667 22.90 3.07 31.95 2.90
834 853 1.137872 GATCACGACAGAATCCTGGCT 59.862 52.381 0.00 0.00 46.39 4.75
867 886 1.137086 GAGATCGCTACTTGCCCTTGA 59.863 52.381 0.00 0.00 38.78 3.02
869 888 1.490574 AGAGATCGCTACTTGCCCTT 58.509 50.000 0.00 0.00 38.78 3.95
946 2383 7.223387 GGTACGTGTTTCGAAATCAGGTATATT 59.777 37.037 27.98 15.84 42.86 1.28
954 2391 3.389925 AGGGTACGTGTTTCGAAATCA 57.610 42.857 14.69 10.99 42.86 2.57
965 2402 4.159135 ACAGTGGTTAGATTAGGGTACGTG 59.841 45.833 0.00 0.00 0.00 4.49
1005 2442 1.831286 GTAGGAGGATCGCGGGGAA 60.831 63.158 6.13 0.00 34.37 3.97
1082 2519 0.807667 GGAGTCATGCTGTACAGGCG 60.808 60.000 23.95 0.22 0.00 5.52
1087 2524 1.103803 TCGGAGGAGTCATGCTGTAC 58.896 55.000 0.00 0.00 0.00 2.90
1092 2544 2.105128 CCGTCGGAGGAGTCATGC 59.895 66.667 4.91 0.00 0.00 4.06
1105 2557 0.465824 TCCTCCGATCCTTCTCCGTC 60.466 60.000 0.00 0.00 0.00 4.79
1115 2600 0.251165 CTCCTCCTCCTCCTCCGATC 60.251 65.000 0.00 0.00 0.00 3.69
1135 2620 1.927895 GATTCTTCATCGTGCTCCGT 58.072 50.000 0.00 0.00 37.94 4.69
1146 2631 1.103803 CCTCCTCCGACGATTCTTCA 58.896 55.000 0.00 0.00 0.00 3.02
1147 2632 0.249114 GCCTCCTCCGACGATTCTTC 60.249 60.000 0.00 0.00 0.00 2.87
1148 2633 1.817209 GCCTCCTCCGACGATTCTT 59.183 57.895 0.00 0.00 0.00 2.52
1149 2634 2.482333 CGCCTCCTCCGACGATTCT 61.482 63.158 0.00 0.00 0.00 2.40
1150 2635 2.026301 CGCCTCCTCCGACGATTC 59.974 66.667 0.00 0.00 0.00 2.52
1151 2636 3.528370 CCGCCTCCTCCGACGATT 61.528 66.667 0.00 0.00 0.00 3.34
1163 2648 2.840753 AACACATTGTCCCCCGCCT 61.841 57.895 0.00 0.00 0.00 5.52
1180 2665 1.448893 GGCTATTGTCGTCGGGCAA 60.449 57.895 5.82 5.82 0.00 4.52
1291 2776 1.746615 CGACAGGTTGGGCATCCAG 60.747 63.158 0.00 0.00 45.04 3.86
1300 2786 0.593128 CTTTTGGGCTCGACAGGTTG 59.407 55.000 0.00 0.00 0.00 3.77
1317 2803 2.363795 TCGGCCGTCCTCATCCTT 60.364 61.111 27.15 0.00 0.00 3.36
1365 2851 4.898320 TCTTAATCAGAGCAACTTCAGCA 58.102 39.130 0.00 0.00 0.00 4.41
1402 2918 7.778470 AAGAATCGATCTTGTCTTGGAATAC 57.222 36.000 8.86 0.00 46.71 1.89
1479 2995 3.688673 GCTTCATGAAGGGAGACTTGAAG 59.311 47.826 31.41 8.34 44.04 3.02
1495 3011 3.621958 GCCTTCTCTTCAGGAAGCTTCAT 60.622 47.826 27.02 18.73 38.91 2.57
1552 3068 4.159377 TCGATGCCTTTAGTTTTGCAAG 57.841 40.909 0.00 0.00 37.27 4.01
1586 3102 4.380843 TTTGCCACCTCCTTTCTGATAA 57.619 40.909 0.00 0.00 0.00 1.75
1608 3124 3.009723 GTCGAGCAAATTGATGAGGGAA 58.990 45.455 0.00 0.00 0.00 3.97
1694 3210 9.131791 ACAAAAGTTTTGTCAACTGACCTATAT 57.868 29.630 24.92 0.38 44.15 0.86
1695 3211 8.514330 ACAAAAGTTTTGTCAACTGACCTATA 57.486 30.769 24.92 0.00 44.15 1.31
1696 3212 7.404671 ACAAAAGTTTTGTCAACTGACCTAT 57.595 32.000 24.92 1.39 44.15 2.57
1697 3213 6.827586 ACAAAAGTTTTGTCAACTGACCTA 57.172 33.333 24.92 0.00 44.15 3.08
1747 3280 6.045072 ACTAATTCCGGACAATCAACTGTA 57.955 37.500 1.83 0.00 0.00 2.74
1749 3282 5.880054 AACTAATTCCGGACAATCAACTG 57.120 39.130 1.83 0.00 0.00 3.16
1781 3315 0.820891 CCTGATTCCCCATTGCGAGG 60.821 60.000 0.00 0.00 0.00 4.63
1799 3333 7.898014 AATTTTACCTAAGATTCATGGTCCC 57.102 36.000 0.00 0.00 34.33 4.46
1874 3418 8.798975 ATAACCAGGGTAGATCTGAATTCTAA 57.201 34.615 5.18 0.00 34.36 2.10
1882 3426 9.277783 CTGAAATAAATAACCAGGGTAGATCTG 57.722 37.037 5.18 0.00 0.00 2.90
1939 3483 2.056577 GTTAGACAACAAGCTACGCGT 58.943 47.619 19.17 19.17 34.60 6.01
2290 3985 6.003950 TGGGAAGAAACAAATCTAAGACTGG 58.996 40.000 0.00 0.00 0.00 4.00
2308 4003 0.040157 CGCACACACACATTGGGAAG 60.040 55.000 0.00 0.00 30.45 3.46
2314 4009 2.232756 TACACTCGCACACACACATT 57.767 45.000 0.00 0.00 0.00 2.71
2328 4023 6.013032 AGCCAGGATATAAGATGCATTACACT 60.013 38.462 0.00 0.00 0.00 3.55
2364 4059 7.199766 TGTTGCGAAAAGTTAATCAGTCAATT 58.800 30.769 0.00 0.00 0.00 2.32
2444 4144 2.108250 AGGTCTGCAACAAATGGGTAGT 59.892 45.455 0.00 0.00 0.00 2.73
2536 4240 6.013293 GGCTCAATATAATAGGTCCCACTTCT 60.013 42.308 0.00 0.00 0.00 2.85
2545 4306 6.149474 GCGAATTGTGGCTCAATATAATAGGT 59.851 38.462 14.50 0.00 44.85 3.08
2584 4345 1.871080 ACTGAGCAGAACTGAAACCG 58.129 50.000 4.21 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.