Multiple sequence alignment - TraesCS1B01G086500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G086500 chr1B 100.000 2686 0 0 1 2686 72695457 72698142 0.000000e+00 4961
1 TraesCS1B01G086500 chr1B 81.065 338 33 21 1200 1509 72246690 72247024 9.610000e-60 241
2 TraesCS1B01G086500 chr2D 95.563 631 28 0 2056 2686 428658574 428657944 0.000000e+00 1011
3 TraesCS1B01G086500 chr1A 93.671 632 39 1 2055 2686 297743678 297744308 0.000000e+00 944
4 TraesCS1B01G086500 chr1A 84.255 940 50 49 955 1847 49897749 49896861 0.000000e+00 826
5 TraesCS1B01G086500 chr1A 82.862 601 83 13 71 659 285979828 285980420 3.060000e-144 521
6 TraesCS1B01G086500 chr1A 75.314 636 143 11 2056 2684 521987383 521988011 2.620000e-75 292
7 TraesCS1B01G086500 chr1A 87.815 238 20 5 731 959 49898016 49897779 1.230000e-68 270
8 TraesCS1B01G086500 chr1A 86.111 252 27 6 1264 1509 49961205 49960956 5.700000e-67 265
9 TraesCS1B01G086500 chr1D 88.010 809 44 16 955 1752 50720306 50719540 0.000000e+00 907
10 TraesCS1B01G086500 chr1D 82.792 616 88 13 71 674 431763592 431764201 3.940000e-148 534
11 TraesCS1B01G086500 chr1D 82.419 620 93 11 71 679 435528809 435529423 6.590000e-146 527
12 TraesCS1B01G086500 chr1D 82.295 610 97 9 71 673 110975585 110976190 3.960000e-143 518
13 TraesCS1B01G086500 chr1D 86.056 251 29 5 1264 1509 50724037 50723788 5.700000e-67 265
14 TraesCS1B01G086500 chr1D 89.320 103 8 3 1749 1849 50714755 50714654 2.810000e-25 126
15 TraesCS1B01G086500 chr1D 90.909 88 4 1 876 959 50720419 50720332 6.080000e-22 115
16 TraesCS1B01G086500 chr7D 83.740 615 81 13 71 673 628135102 628134495 5.020000e-157 564
17 TraesCS1B01G086500 chr7D 74.257 505 120 7 2057 2556 214331883 214332382 1.260000e-48 204
18 TraesCS1B01G086500 chr6D 83.415 615 86 13 71 674 20134490 20135099 8.400000e-155 556
19 TraesCS1B01G086500 chr7B 83.089 615 85 16 71 673 339618957 339619564 2.350000e-150 542
20 TraesCS1B01G086500 chr5D 83.056 602 89 9 71 663 220673966 220674563 3.940000e-148 534
21 TraesCS1B01G086500 chr3D 82.792 616 87 13 71 674 15377111 15377719 1.420000e-147 532
22 TraesCS1B01G086500 chr3D 75.436 631 144 8 2056 2681 253510671 253511295 2.020000e-76 296
23 TraesCS1B01G086500 chr4D 80.000 630 125 1 2056 2684 362452533 362451904 5.240000e-127 464
24 TraesCS1B01G086500 chr4B 74.921 634 147 9 2057 2684 74259277 74259904 2.040000e-71 279
25 TraesCS1B01G086500 chr6A 74.763 634 149 8 2056 2684 59711528 59712155 9.470000e-70 274
26 TraesCS1B01G086500 chr5B 81.818 242 36 7 2056 2293 621898980 621899217 2.110000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G086500 chr1B 72695457 72698142 2685 False 4961 4961 100.000 1 2686 1 chr1B.!!$F2 2685
1 TraesCS1B01G086500 chr2D 428657944 428658574 630 True 1011 1011 95.563 2056 2686 1 chr2D.!!$R1 630
2 TraesCS1B01G086500 chr1A 297743678 297744308 630 False 944 944 93.671 2055 2686 1 chr1A.!!$F2 631
3 TraesCS1B01G086500 chr1A 49896861 49898016 1155 True 548 826 86.035 731 1847 2 chr1A.!!$R2 1116
4 TraesCS1B01G086500 chr1A 285979828 285980420 592 False 521 521 82.862 71 659 1 chr1A.!!$F1 588
5 TraesCS1B01G086500 chr1A 521987383 521988011 628 False 292 292 75.314 2056 2684 1 chr1A.!!$F3 628
6 TraesCS1B01G086500 chr1D 431763592 431764201 609 False 534 534 82.792 71 674 1 chr1D.!!$F2 603
7 TraesCS1B01G086500 chr1D 435528809 435529423 614 False 527 527 82.419 71 679 1 chr1D.!!$F3 608
8 TraesCS1B01G086500 chr1D 110975585 110976190 605 False 518 518 82.295 71 673 1 chr1D.!!$F1 602
9 TraesCS1B01G086500 chr1D 50719540 50724037 4497 True 429 907 88.325 876 1752 3 chr1D.!!$R2 876
10 TraesCS1B01G086500 chr7D 628134495 628135102 607 True 564 564 83.740 71 673 1 chr7D.!!$R1 602
11 TraesCS1B01G086500 chr6D 20134490 20135099 609 False 556 556 83.415 71 674 1 chr6D.!!$F1 603
12 TraesCS1B01G086500 chr7B 339618957 339619564 607 False 542 542 83.089 71 673 1 chr7B.!!$F1 602
13 TraesCS1B01G086500 chr5D 220673966 220674563 597 False 534 534 83.056 71 663 1 chr5D.!!$F1 592
14 TraesCS1B01G086500 chr3D 15377111 15377719 608 False 532 532 82.792 71 674 1 chr3D.!!$F1 603
15 TraesCS1B01G086500 chr3D 253510671 253511295 624 False 296 296 75.436 2056 2681 1 chr3D.!!$F2 625
16 TraesCS1B01G086500 chr4D 362451904 362452533 629 True 464 464 80.000 2056 2684 1 chr4D.!!$R1 628
17 TraesCS1B01G086500 chr4B 74259277 74259904 627 False 279 279 74.921 2057 2684 1 chr4B.!!$F1 627
18 TraesCS1B01G086500 chr6A 59711528 59712155 627 False 274 274 74.763 2056 2684 1 chr6A.!!$F1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 801 0.245813 GGCGTAGAGAAAACCGTCCT 59.754 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 5180 0.179059 ACGCATATGACCCAATCGCA 60.179 50.0 6.97 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.960064 AGGTTTAAATGGATTGATATAGTCCCT 58.040 33.333 0.00 0.00 34.40 4.20
36 37 9.588096 GGTTTAAATGGATTGATATAGTCCCTT 57.412 33.333 0.00 0.00 34.40 3.95
41 42 6.672266 TGGATTGATATAGTCCCTTGAGTC 57.328 41.667 0.00 0.00 34.40 3.36
42 43 5.544176 TGGATTGATATAGTCCCTTGAGTCC 59.456 44.000 0.00 0.00 34.40 3.85
44 45 6.954684 GGATTGATATAGTCCCTTGAGTCCTA 59.045 42.308 0.00 0.00 0.00 2.94
45 46 7.123547 GGATTGATATAGTCCCTTGAGTCCTAG 59.876 44.444 0.00 0.00 0.00 3.02
46 47 5.326069 TGATATAGTCCCTTGAGTCCTAGC 58.674 45.833 0.00 0.00 0.00 3.42
47 48 3.983533 ATAGTCCCTTGAGTCCTAGCT 57.016 47.619 0.00 0.00 0.00 3.32
48 49 2.632763 AGTCCCTTGAGTCCTAGCTT 57.367 50.000 0.00 0.00 0.00 3.74
49 50 2.183679 AGTCCCTTGAGTCCTAGCTTG 58.816 52.381 0.00 0.00 0.00 4.01
51 52 0.615331 CCCTTGAGTCCTAGCTTGCA 59.385 55.000 0.00 0.00 0.00 4.08
52 53 1.003580 CCCTTGAGTCCTAGCTTGCAA 59.996 52.381 0.00 0.00 0.00 4.08
53 54 2.354259 CCTTGAGTCCTAGCTTGCAAG 58.646 52.381 22.44 22.44 34.18 4.01
54 55 2.289945 CCTTGAGTCCTAGCTTGCAAGT 60.290 50.000 26.55 15.87 32.92 3.16
56 57 4.563580 CCTTGAGTCCTAGCTTGCAAGTTA 60.564 45.833 26.55 23.20 32.92 2.24
57 58 4.617253 TGAGTCCTAGCTTGCAAGTTAA 57.383 40.909 26.55 9.27 0.00 2.01
58 59 4.569943 TGAGTCCTAGCTTGCAAGTTAAG 58.430 43.478 26.55 18.65 0.00 1.85
59 60 4.283467 TGAGTCCTAGCTTGCAAGTTAAGA 59.717 41.667 26.55 20.54 0.00 2.10
60 61 5.221641 TGAGTCCTAGCTTGCAAGTTAAGAA 60.222 40.000 26.55 10.77 0.00 2.52
62 63 6.062095 AGTCCTAGCTTGCAAGTTAAGAAAA 58.938 36.000 26.55 4.75 0.00 2.29
67 68 3.371168 CTTGCAAGTTAAGAAAAGCGCA 58.629 40.909 18.65 0.00 0.00 6.09
68 69 3.641437 TGCAAGTTAAGAAAAGCGCAT 57.359 38.095 11.47 0.00 0.00 4.73
69 70 4.757799 TGCAAGTTAAGAAAAGCGCATA 57.242 36.364 11.47 0.00 0.00 3.14
81 82 2.607892 GCGCATATGCCTTCCGTCC 61.608 63.158 21.77 0.00 37.91 4.79
181 182 8.467598 GTGGGAGGGTTCTATTTTTAGATTTTC 58.532 37.037 0.00 0.00 0.00 2.29
214 215 3.745975 TGTTAGATTTTGTGTCCTGCTCG 59.254 43.478 0.00 0.00 0.00 5.03
230 231 1.000019 TCGGGAAGACGAGGATGGT 60.000 57.895 0.00 0.00 38.06 3.55
254 256 3.392616 GGCTCCCTGAAGATGGAATAAGA 59.607 47.826 0.00 0.00 0.00 2.10
260 262 6.616959 TCCCTGAAGATGGAATAAGATTCTCA 59.383 38.462 0.00 0.00 0.00 3.27
262 264 7.278135 CCTGAAGATGGAATAAGATTCTCACA 58.722 38.462 0.00 0.00 0.00 3.58
301 309 2.889617 CGTGTCTATCGGTGGGCA 59.110 61.111 0.00 0.00 0.00 5.36
353 361 2.115427 TGGTGGATTTGCTCGGATCTA 58.885 47.619 0.00 0.00 0.00 1.98
362 370 2.481854 TGCTCGGATCTAGTCGTAGTC 58.518 52.381 0.00 0.00 0.00 2.59
373 381 4.807834 TCTAGTCGTAGTCCGTCTATGTTG 59.192 45.833 0.00 0.00 36.77 3.33
393 401 3.897239 TGGTGTGTCTTCAGGTTTGATT 58.103 40.909 0.00 0.00 32.27 2.57
402 410 6.106673 GTCTTCAGGTTTGATTCTTCCGATA 58.893 40.000 0.00 0.00 32.27 2.92
420 428 4.093115 CCGATATACGCTACTCTTCATCGT 59.907 45.833 0.00 0.00 41.07 3.73
451 460 2.507110 TTCTGCTGCGCTGGTCCTAC 62.507 60.000 16.47 0.00 0.00 3.18
481 490 1.598962 ACGACGACTTCCCGACTGA 60.599 57.895 0.00 0.00 0.00 3.41
483 492 1.154263 GACGACTTCCCGACTGACG 60.154 63.158 0.00 0.00 42.18 4.35
485 494 1.168407 ACGACTTCCCGACTGACGAA 61.168 55.000 0.22 0.00 45.77 3.85
588 599 1.336125 CGTTAGGTGGTCTACGGATCC 59.664 57.143 0.00 0.00 0.00 3.36
630 641 3.119065 TCTGGTGTTCGTTGTACTGTCAA 60.119 43.478 0.00 0.00 0.00 3.18
682 693 9.699703 TTTTCTCGGAAAAGAAAAGAAAAGAAA 57.300 25.926 7.52 0.00 45.60 2.52
683 694 9.699703 TTTCTCGGAAAAGAAAAGAAAAGAAAA 57.300 25.926 0.00 0.00 41.17 2.29
684 695 8.911247 TCTCGGAAAAGAAAAGAAAAGAAAAG 57.089 30.769 0.00 0.00 0.00 2.27
685 696 8.736244 TCTCGGAAAAGAAAAGAAAAGAAAAGA 58.264 29.630 0.00 0.00 0.00 2.52
686 697 9.353999 CTCGGAAAAGAAAAGAAAAGAAAAGAA 57.646 29.630 0.00 0.00 0.00 2.52
687 698 9.699703 TCGGAAAAGAAAAGAAAAGAAAAGAAA 57.300 25.926 0.00 0.00 0.00 2.52
688 699 9.958285 CGGAAAAGAAAAGAAAAGAAAAGAAAG 57.042 29.630 0.00 0.00 0.00 2.62
695 706 9.599866 GAAAAGAAAAGAAAAGAAAGGGATTGA 57.400 29.630 0.00 0.00 0.00 2.57
757 768 8.741603 ATCTAGAAAGTAGTCACTCTAACCTC 57.258 38.462 0.00 0.00 32.29 3.85
758 769 5.883503 AGAAAGTAGTCACTCTAACCTCG 57.116 43.478 0.00 0.00 32.29 4.63
760 771 3.996921 AGTAGTCACTCTAACCTCGGA 57.003 47.619 0.00 0.00 0.00 4.55
761 772 4.506937 AGTAGTCACTCTAACCTCGGAT 57.493 45.455 0.00 0.00 0.00 4.18
762 773 4.453751 AGTAGTCACTCTAACCTCGGATC 58.546 47.826 0.00 0.00 0.00 3.36
763 774 3.367646 AGTCACTCTAACCTCGGATCA 57.632 47.619 0.00 0.00 0.00 2.92
764 775 3.698289 AGTCACTCTAACCTCGGATCAA 58.302 45.455 0.00 0.00 0.00 2.57
765 776 4.087182 AGTCACTCTAACCTCGGATCAAA 58.913 43.478 0.00 0.00 0.00 2.69
766 777 4.082136 AGTCACTCTAACCTCGGATCAAAC 60.082 45.833 0.00 0.00 0.00 2.93
767 778 3.830178 TCACTCTAACCTCGGATCAAACA 59.170 43.478 0.00 0.00 0.00 2.83
769 780 4.627467 CACTCTAACCTCGGATCAAACAAG 59.373 45.833 0.00 0.00 0.00 3.16
770 781 4.184629 CTCTAACCTCGGATCAAACAAGG 58.815 47.826 0.00 0.00 0.00 3.61
771 782 2.200373 AACCTCGGATCAAACAAGGG 57.800 50.000 0.00 0.00 0.00 3.95
772 783 0.328258 ACCTCGGATCAAACAAGGGG 59.672 55.000 0.00 0.00 0.00 4.79
773 784 1.032114 CCTCGGATCAAACAAGGGGC 61.032 60.000 0.00 0.00 0.00 5.80
774 785 1.369091 CTCGGATCAAACAAGGGGCG 61.369 60.000 0.00 0.00 0.00 6.13
776 787 0.391927 CGGATCAAACAAGGGGCGTA 60.392 55.000 0.00 0.00 0.00 4.42
779 790 2.280628 GATCAAACAAGGGGCGTAGAG 58.719 52.381 0.00 0.00 0.00 2.43
780 791 1.344065 TCAAACAAGGGGCGTAGAGA 58.656 50.000 0.00 0.00 0.00 3.10
782 793 2.105134 TCAAACAAGGGGCGTAGAGAAA 59.895 45.455 0.00 0.00 0.00 2.52
783 794 2.882137 CAAACAAGGGGCGTAGAGAAAA 59.118 45.455 0.00 0.00 0.00 2.29
784 795 2.180432 ACAAGGGGCGTAGAGAAAAC 57.820 50.000 0.00 0.00 0.00 2.43
785 796 1.271217 ACAAGGGGCGTAGAGAAAACC 60.271 52.381 0.00 0.00 0.00 3.27
787 798 1.190178 AGGGGCGTAGAGAAAACCGT 61.190 55.000 0.00 0.00 0.00 4.83
788 799 0.738762 GGGGCGTAGAGAAAACCGTC 60.739 60.000 0.00 0.00 0.00 4.79
790 801 0.245813 GGCGTAGAGAAAACCGTCCT 59.754 55.000 0.00 0.00 0.00 3.85
791 802 1.626747 GCGTAGAGAAAACCGTCCTC 58.373 55.000 0.00 0.00 0.00 3.71
792 803 1.068055 GCGTAGAGAAAACCGTCCTCA 60.068 52.381 0.00 0.00 0.00 3.86
793 804 2.593257 CGTAGAGAAAACCGTCCTCAC 58.407 52.381 0.00 0.00 0.00 3.51
794 805 2.030540 CGTAGAGAAAACCGTCCTCACA 60.031 50.000 0.00 0.00 0.00 3.58
795 806 2.821991 AGAGAAAACCGTCCTCACAG 57.178 50.000 0.00 0.00 0.00 3.66
796 807 2.317040 AGAGAAAACCGTCCTCACAGA 58.683 47.619 0.00 0.00 0.00 3.41
797 808 2.297597 AGAGAAAACCGTCCTCACAGAG 59.702 50.000 0.00 0.00 0.00 3.35
806 817 4.097218 CTCACAGAGGACCGTCCA 57.903 61.111 19.95 0.00 39.61 4.02
807 818 1.886585 CTCACAGAGGACCGTCCAG 59.113 63.158 19.95 11.11 39.61 3.86
808 819 2.219325 CTCACAGAGGACCGTCCAGC 62.219 65.000 19.95 10.90 39.61 4.85
809 820 2.203640 ACAGAGGACCGTCCAGCA 60.204 61.111 19.95 0.00 39.61 4.41
810 821 1.837051 ACAGAGGACCGTCCAGCAA 60.837 57.895 19.95 0.00 39.61 3.91
811 822 1.371183 CAGAGGACCGTCCAGCAAA 59.629 57.895 19.95 0.00 39.61 3.68
813 824 1.207089 CAGAGGACCGTCCAGCAAATA 59.793 52.381 19.95 0.00 39.61 1.40
814 825 2.119495 AGAGGACCGTCCAGCAAATAT 58.881 47.619 19.95 0.00 39.61 1.28
815 826 2.505819 AGAGGACCGTCCAGCAAATATT 59.494 45.455 19.95 0.00 39.61 1.28
820 831 5.891551 AGGACCGTCCAGCAAATATTTTAAT 59.108 36.000 19.95 0.00 39.61 1.40
821 832 7.057894 AGGACCGTCCAGCAAATATTTTAATA 58.942 34.615 19.95 0.00 39.61 0.98
822 833 7.558444 AGGACCGTCCAGCAAATATTTTAATAA 59.442 33.333 19.95 0.00 39.61 1.40
823 834 7.646526 GGACCGTCCAGCAAATATTTTAATAAC 59.353 37.037 13.05 0.00 36.28 1.89
824 835 8.057536 ACCGTCCAGCAAATATTTTAATAACA 57.942 30.769 0.00 0.00 0.00 2.41
825 836 8.691797 ACCGTCCAGCAAATATTTTAATAACAT 58.308 29.630 0.00 0.00 0.00 2.71
826 837 8.967218 CCGTCCAGCAAATATTTTAATAACATG 58.033 33.333 0.00 0.00 0.00 3.21
827 838 8.967218 CGTCCAGCAAATATTTTAATAACATGG 58.033 33.333 0.00 0.00 0.00 3.66
846 857 3.287222 TGGAACTCCAAAACAACAGAGG 58.713 45.455 0.00 0.00 44.35 3.69
848 859 1.308998 ACTCCAAAACAACAGAGGCG 58.691 50.000 0.00 0.00 0.00 5.52
850 861 0.465460 TCCAAAACAACAGAGGCGCT 60.465 50.000 7.64 0.00 0.00 5.92
851 862 1.202710 TCCAAAACAACAGAGGCGCTA 60.203 47.619 7.64 0.00 0.00 4.26
852 863 1.606668 CCAAAACAACAGAGGCGCTAA 59.393 47.619 7.64 0.00 0.00 3.09
853 864 2.604614 CCAAAACAACAGAGGCGCTAAC 60.605 50.000 7.64 0.00 0.00 2.34
854 865 0.865769 AAACAACAGAGGCGCTAACG 59.134 50.000 7.64 0.00 44.07 3.18
855 866 0.949105 AACAACAGAGGCGCTAACGG 60.949 55.000 7.64 2.47 40.57 4.44
857 868 0.949105 CAACAGAGGCGCTAACGGTT 60.949 55.000 7.64 9.30 40.57 4.44
858 869 0.949105 AACAGAGGCGCTAACGGTTG 60.949 55.000 7.64 0.00 40.57 3.77
866 877 3.007070 GCTAACGGTTGCGACGTGG 62.007 63.158 3.07 0.00 44.83 4.94
867 878 2.356075 TAACGGTTGCGACGTGGG 60.356 61.111 3.07 0.00 44.83 4.61
876 887 4.429212 CGACGTGGGCGGACATGA 62.429 66.667 0.00 0.00 43.45 3.07
877 888 2.813908 GACGTGGGCGGACATGAC 60.814 66.667 0.00 0.00 43.45 3.06
881 892 4.408821 TGGGCGGACATGACCAGC 62.409 66.667 14.61 16.28 44.00 4.85
882 893 4.408821 GGGCGGACATGACCAGCA 62.409 66.667 23.33 0.00 36.84 4.41
883 894 2.821366 GGCGGACATGACCAGCAG 60.821 66.667 23.33 7.61 33.60 4.24
884 895 3.503363 GCGGACATGACCAGCAGC 61.503 66.667 19.58 10.04 32.76 5.25
982 3804 5.299949 TCCTCTCTATATACAACACGCGTA 58.700 41.667 13.44 0.00 0.00 4.42
987 3809 1.537212 TATACAACACGCGTACGCAG 58.463 50.000 36.44 29.40 45.53 5.18
1040 3862 0.872388 CCAAACAACCTCGTACAGCC 59.128 55.000 0.00 0.00 0.00 4.85
1041 3863 1.588674 CAAACAACCTCGTACAGCCA 58.411 50.000 0.00 0.00 0.00 4.75
1042 3864 1.531149 CAAACAACCTCGTACAGCCAG 59.469 52.381 0.00 0.00 0.00 4.85
1043 3865 0.602905 AACAACCTCGTACAGCCAGC 60.603 55.000 0.00 0.00 0.00 4.85
1044 3866 1.005037 CAACCTCGTACAGCCAGCA 60.005 57.895 0.00 0.00 0.00 4.41
1046 3868 1.754380 AACCTCGTACAGCCAGCACA 61.754 55.000 0.00 0.00 0.00 4.57
1047 3869 1.446792 CCTCGTACAGCCAGCACAG 60.447 63.158 0.00 0.00 0.00 3.66
1048 3870 1.446792 CTCGTACAGCCAGCACAGG 60.447 63.158 0.00 0.00 0.00 4.00
1116 3938 1.530013 CCGTCACCTACTGGTCCGTT 61.530 60.000 0.00 0.00 46.60 4.44
1188 4044 0.244994 CTCTCTGGTTGACTGACCGG 59.755 60.000 0.00 0.00 45.67 5.28
1192 4048 2.668550 GGTTGACTGACCGGTGCC 60.669 66.667 14.63 0.00 0.00 5.01
1193 4049 2.668550 GTTGACTGACCGGTGCCC 60.669 66.667 14.63 0.00 0.00 5.36
1340 4202 4.884257 GCGCGATTCGGCCACCTA 62.884 66.667 12.10 0.00 38.94 3.08
1518 4380 4.880426 TCGCCCCTGATCCCTCCC 62.880 72.222 0.00 0.00 0.00 4.30
1524 4386 3.227276 CTGATCCCTCCCCGGACG 61.227 72.222 0.73 0.00 33.77 4.79
1561 4423 1.729470 CCGTGATCTGAGGGTCTCGG 61.729 65.000 12.26 12.26 42.62 4.63
1562 4424 1.439644 GTGATCTGAGGGTCTCGGC 59.560 63.158 0.00 0.00 36.85 5.54
1563 4425 2.121538 TGATCTGAGGGTCTCGGCG 61.122 63.158 0.00 0.00 36.85 6.46
1564 4426 2.043852 ATCTGAGGGTCTCGGCGT 60.044 61.111 6.85 0.00 36.85 5.68
1565 4427 2.065906 GATCTGAGGGTCTCGGCGTC 62.066 65.000 6.85 0.00 36.85 5.19
1566 4428 2.559922 ATCTGAGGGTCTCGGCGTCT 62.560 60.000 6.85 0.00 36.85 4.18
1567 4429 2.750637 TGAGGGTCTCGGCGTCTC 60.751 66.667 6.85 8.19 32.35 3.36
1568 4430 3.878519 GAGGGTCTCGGCGTCTCG 61.879 72.222 6.85 0.00 0.00 4.04
1601 4463 3.088532 TGCCGTATTCTTTGATTGCCTT 58.911 40.909 0.00 0.00 0.00 4.35
1636 4498 2.093921 CCTCCGTCTCTTTCTCCTTTCC 60.094 54.545 0.00 0.00 0.00 3.13
1637 4499 1.900486 TCCGTCTCTTTCTCCTTTCCC 59.100 52.381 0.00 0.00 0.00 3.97
1702 4564 5.241506 GGAATGAAACAGACTGGTTGATTCA 59.758 40.000 32.66 21.56 40.20 2.57
1703 4565 6.239008 GGAATGAAACAGACTGGTTGATTCAA 60.239 38.462 32.66 7.48 39.63 2.69
1704 4566 5.499139 TGAAACAGACTGGTTGATTCAAC 57.501 39.130 19.17 19.17 42.89 3.18
1705 4567 5.192927 TGAAACAGACTGGTTGATTCAACT 58.807 37.500 24.60 9.10 43.14 3.16
1706 4568 5.652014 TGAAACAGACTGGTTGATTCAACTT 59.348 36.000 24.60 11.51 43.14 2.66
1710 4572 5.829924 ACAGACTGGTTGATTCAACTTGATT 59.170 36.000 24.60 9.21 43.14 2.57
1718 4580 4.933134 TGATTCAACTTGATTGGGATCCA 58.067 39.130 15.23 0.00 38.98 3.41
1719 4581 4.951715 TGATTCAACTTGATTGGGATCCAG 59.048 41.667 15.23 3.32 38.98 3.86
1720 4582 4.656100 TTCAACTTGATTGGGATCCAGA 57.344 40.909 15.23 0.76 38.98 3.86
1729 4591 4.160814 TGATTGGGATCCAGATTTGCTTTG 59.839 41.667 15.23 0.00 33.81 2.77
1738 4600 7.650903 GGATCCAGATTTGCTTTGTGATATTTC 59.349 37.037 6.95 0.00 0.00 2.17
1778 4640 1.358759 GACTTGGTTGCGTTGTGGG 59.641 57.895 0.00 0.00 0.00 4.61
1783 4645 1.525077 GGTTGCGTTGTGGGACTGA 60.525 57.895 0.00 0.00 0.00 3.41
1785 4647 0.736053 GTTGCGTTGTGGGACTGAAA 59.264 50.000 0.00 0.00 0.00 2.69
1786 4648 1.021202 TTGCGTTGTGGGACTGAAAG 58.979 50.000 0.00 0.00 42.29 2.62
1808 4671 6.811253 AGTCAAAAAGTTGTGTACTGTTCA 57.189 33.333 0.00 0.00 32.96 3.18
1856 4719 4.662023 TGCCCGTGCATCAATCAT 57.338 50.000 0.00 0.00 44.23 2.45
1857 4720 3.796764 TGCCCGTGCATCAATCATA 57.203 47.368 0.00 0.00 44.23 2.15
1858 4721 1.308047 TGCCCGTGCATCAATCATAC 58.692 50.000 0.00 0.00 44.23 2.39
1859 4722 1.134128 TGCCCGTGCATCAATCATACT 60.134 47.619 0.00 0.00 44.23 2.12
1860 4723 1.949525 GCCCGTGCATCAATCATACTT 59.050 47.619 0.00 0.00 37.47 2.24
1861 4724 2.358898 GCCCGTGCATCAATCATACTTT 59.641 45.455 0.00 0.00 37.47 2.66
1862 4725 3.563808 GCCCGTGCATCAATCATACTTTA 59.436 43.478 0.00 0.00 37.47 1.85
1863 4726 4.036262 GCCCGTGCATCAATCATACTTTAA 59.964 41.667 0.00 0.00 37.47 1.52
1864 4727 5.751680 CCCGTGCATCAATCATACTTTAAG 58.248 41.667 0.00 0.00 0.00 1.85
1865 4728 5.296780 CCCGTGCATCAATCATACTTTAAGT 59.703 40.000 2.32 2.32 0.00 2.24
1866 4729 6.183360 CCCGTGCATCAATCATACTTTAAGTT 60.183 38.462 1.94 0.00 0.00 2.66
1867 4730 7.011950 CCCGTGCATCAATCATACTTTAAGTTA 59.988 37.037 1.94 0.00 0.00 2.24
1868 4731 8.559536 CCGTGCATCAATCATACTTTAAGTTAT 58.440 33.333 1.94 0.00 0.00 1.89
1869 4732 9.935682 CGTGCATCAATCATACTTTAAGTTATT 57.064 29.630 1.94 0.00 0.00 1.40
1880 4743 9.730420 CATACTTTAAGTTATTTGTACCCATGC 57.270 33.333 1.94 0.00 0.00 4.06
1881 4744 7.768807 ACTTTAAGTTATTTGTACCCATGCA 57.231 32.000 0.00 0.00 0.00 3.96
1882 4745 8.361169 ACTTTAAGTTATTTGTACCCATGCAT 57.639 30.769 0.00 0.00 0.00 3.96
1883 4746 8.811994 ACTTTAAGTTATTTGTACCCATGCATT 58.188 29.630 0.00 0.00 0.00 3.56
1884 4747 9.301153 CTTTAAGTTATTTGTACCCATGCATTC 57.699 33.333 0.00 0.00 0.00 2.67
1885 4748 6.849085 AAGTTATTTGTACCCATGCATTCA 57.151 33.333 0.00 0.00 0.00 2.57
1886 4749 6.207691 AGTTATTTGTACCCATGCATTCAC 57.792 37.500 0.00 0.00 0.00 3.18
1887 4750 5.127031 AGTTATTTGTACCCATGCATTCACC 59.873 40.000 0.00 0.00 0.00 4.02
1888 4751 2.593925 TTGTACCCATGCATTCACCA 57.406 45.000 0.00 0.00 0.00 4.17
1889 4752 2.593925 TGTACCCATGCATTCACCAA 57.406 45.000 0.00 0.00 0.00 3.67
1890 4753 2.445427 TGTACCCATGCATTCACCAAG 58.555 47.619 0.00 0.00 0.00 3.61
1891 4754 2.224992 TGTACCCATGCATTCACCAAGT 60.225 45.455 0.00 0.00 0.00 3.16
1892 4755 2.014010 ACCCATGCATTCACCAAGTT 57.986 45.000 0.00 0.00 0.00 2.66
1893 4756 1.619827 ACCCATGCATTCACCAAGTTG 59.380 47.619 0.00 0.00 0.00 3.16
1894 4757 1.619827 CCCATGCATTCACCAAGTTGT 59.380 47.619 0.00 0.00 0.00 3.32
1895 4758 2.037511 CCCATGCATTCACCAAGTTGTT 59.962 45.455 0.00 0.00 0.00 2.83
1896 4759 3.257873 CCCATGCATTCACCAAGTTGTTA 59.742 43.478 0.00 0.00 0.00 2.41
1897 4760 4.236935 CCATGCATTCACCAAGTTGTTAC 58.763 43.478 0.00 0.00 0.00 2.50
1898 4761 4.236935 CATGCATTCACCAAGTTGTTACC 58.763 43.478 0.00 0.00 0.00 2.85
1899 4762 2.625790 TGCATTCACCAAGTTGTTACCC 59.374 45.455 1.45 0.00 0.00 3.69
1900 4763 2.625790 GCATTCACCAAGTTGTTACCCA 59.374 45.455 1.45 0.00 0.00 4.51
1901 4764 3.552068 GCATTCACCAAGTTGTTACCCAC 60.552 47.826 1.45 0.00 0.00 4.61
1902 4765 1.956297 TCACCAAGTTGTTACCCACG 58.044 50.000 1.45 0.00 0.00 4.94
1903 4766 0.309612 CACCAAGTTGTTACCCACGC 59.690 55.000 1.45 0.00 0.00 5.34
1904 4767 0.181824 ACCAAGTTGTTACCCACGCT 59.818 50.000 1.45 0.00 0.00 5.07
1905 4768 0.591170 CCAAGTTGTTACCCACGCTG 59.409 55.000 1.45 0.00 0.00 5.18
1906 4769 1.588674 CAAGTTGTTACCCACGCTGA 58.411 50.000 0.00 0.00 0.00 4.26
1907 4770 1.944024 CAAGTTGTTACCCACGCTGAA 59.056 47.619 0.00 0.00 0.00 3.02
1908 4771 1.878953 AGTTGTTACCCACGCTGAAG 58.121 50.000 0.00 0.00 0.00 3.02
1909 4772 0.237498 GTTGTTACCCACGCTGAAGC 59.763 55.000 0.00 0.00 37.78 3.86
1910 4773 0.107831 TTGTTACCCACGCTGAAGCT 59.892 50.000 0.10 0.00 39.32 3.74
1911 4774 0.107831 TGTTACCCACGCTGAAGCTT 59.892 50.000 0.00 0.00 39.32 3.74
1912 4775 1.345089 TGTTACCCACGCTGAAGCTTA 59.655 47.619 0.00 0.00 39.32 3.09
1913 4776 2.027561 TGTTACCCACGCTGAAGCTTAT 60.028 45.455 0.00 0.00 39.32 1.73
1914 4777 3.196039 TGTTACCCACGCTGAAGCTTATA 59.804 43.478 0.00 0.00 39.32 0.98
1915 4778 4.186159 GTTACCCACGCTGAAGCTTATAA 58.814 43.478 0.00 0.00 39.32 0.98
1916 4779 3.560636 ACCCACGCTGAAGCTTATAAT 57.439 42.857 0.00 0.00 39.32 1.28
1917 4780 3.886123 ACCCACGCTGAAGCTTATAATT 58.114 40.909 0.00 0.00 39.32 1.40
1918 4781 4.270008 ACCCACGCTGAAGCTTATAATTT 58.730 39.130 0.00 0.00 39.32 1.82
1919 4782 4.335594 ACCCACGCTGAAGCTTATAATTTC 59.664 41.667 0.00 3.93 39.32 2.17
1920 4783 4.335315 CCCACGCTGAAGCTTATAATTTCA 59.665 41.667 0.00 10.43 39.32 2.69
1921 4784 5.266242 CCACGCTGAAGCTTATAATTTCAC 58.734 41.667 0.00 5.88 39.32 3.18
1922 4785 5.065218 CCACGCTGAAGCTTATAATTTCACT 59.935 40.000 0.00 0.00 39.32 3.41
1923 4786 5.961843 CACGCTGAAGCTTATAATTTCACTG 59.038 40.000 0.00 6.70 39.32 3.66
1924 4787 4.966366 CGCTGAAGCTTATAATTTCACTGC 59.034 41.667 0.00 0.00 39.32 4.40
1925 4788 5.447683 CGCTGAAGCTTATAATTTCACTGCA 60.448 40.000 0.00 0.00 39.32 4.41
1926 4789 5.970023 GCTGAAGCTTATAATTTCACTGCAG 59.030 40.000 13.48 13.48 38.21 4.41
1927 4790 5.883661 TGAAGCTTATAATTTCACTGCAGC 58.116 37.500 15.27 0.00 0.00 5.25
1928 4791 5.415389 TGAAGCTTATAATTTCACTGCAGCA 59.585 36.000 15.27 0.00 0.00 4.41
1929 4792 5.240713 AGCTTATAATTTCACTGCAGCAC 57.759 39.130 15.27 0.00 0.00 4.40
1930 4793 4.701651 AGCTTATAATTTCACTGCAGCACA 59.298 37.500 15.27 0.00 0.00 4.57
1931 4794 4.795278 GCTTATAATTTCACTGCAGCACAC 59.205 41.667 15.27 0.00 0.00 3.82
1932 4795 2.967459 TAATTTCACTGCAGCACACG 57.033 45.000 15.27 0.00 0.00 4.49
1933 4796 0.318107 AATTTCACTGCAGCACACGC 60.318 50.000 15.27 0.00 38.99 5.34
1934 4797 2.448153 ATTTCACTGCAGCACACGCG 62.448 55.000 15.27 3.53 45.49 6.01
1935 4798 4.889856 TCACTGCAGCACACGCGT 62.890 61.111 15.27 5.58 45.49 6.01
1936 4799 2.962697 TTCACTGCAGCACACGCGTA 62.963 55.000 13.44 0.00 45.49 4.42
1937 4800 3.036084 ACTGCAGCACACGCGTAC 61.036 61.111 13.44 4.42 45.49 3.67
1938 4801 4.121227 CTGCAGCACACGCGTACG 62.121 66.667 13.44 11.84 45.49 3.67
1941 4804 4.121227 CAGCACACGCGTACGCAG 62.121 66.667 36.44 29.40 45.53 5.18
1942 4805 4.640855 AGCACACGCGTACGCAGT 62.641 61.111 36.44 30.04 45.53 4.40
1943 4806 4.409588 GCACACGCGTACGCAGTG 62.410 66.667 38.35 38.35 45.73 3.66
1944 4807 2.728015 CACACGCGTACGCAGTGA 60.728 61.111 42.45 0.00 45.73 3.41
1945 4808 2.428569 ACACGCGTACGCAGTGAG 60.429 61.111 42.45 29.90 45.73 3.51
1946 4809 3.827784 CACGCGTACGCAGTGAGC 61.828 66.667 37.91 15.46 45.73 4.26
1947 4810 4.039357 ACGCGTACGCAGTGAGCT 62.039 61.111 36.44 12.53 45.73 4.09
1948 4811 3.241059 CGCGTACGCAGTGAGCTC 61.241 66.667 36.44 6.82 45.73 4.09
1949 4812 2.126463 GCGTACGCAGTGAGCTCA 60.126 61.111 33.90 13.74 45.73 4.26
1950 4813 1.517257 GCGTACGCAGTGAGCTCAT 60.517 57.895 33.90 5.78 45.73 2.90
1951 4814 1.078759 GCGTACGCAGTGAGCTCATT 61.079 55.000 33.90 13.69 45.73 2.57
1952 4815 0.917259 CGTACGCAGTGAGCTCATTC 59.083 55.000 21.47 8.07 45.73 2.67
1953 4816 1.732405 CGTACGCAGTGAGCTCATTCA 60.732 52.381 21.47 0.00 45.73 2.57
1954 4817 2.544685 GTACGCAGTGAGCTCATTCAT 58.455 47.619 21.47 7.64 45.73 2.57
1955 4818 2.967599 ACGCAGTGAGCTCATTCATA 57.032 45.000 21.47 0.00 42.51 2.15
1956 4819 2.819115 ACGCAGTGAGCTCATTCATAG 58.181 47.619 21.47 11.85 42.51 2.23
1957 4820 2.133553 CGCAGTGAGCTCATTCATAGG 58.866 52.381 21.47 4.37 42.61 2.57
1958 4821 2.492012 GCAGTGAGCTCATTCATAGGG 58.508 52.381 21.47 3.61 41.15 3.53
1959 4822 2.809665 GCAGTGAGCTCATTCATAGGGG 60.810 54.545 21.47 2.85 41.15 4.79
1960 4823 2.053244 AGTGAGCTCATTCATAGGGGG 58.947 52.381 21.47 0.00 0.00 5.40
1961 4824 1.771255 GTGAGCTCATTCATAGGGGGT 59.229 52.381 21.47 0.00 0.00 4.95
1962 4825 2.173569 GTGAGCTCATTCATAGGGGGTT 59.826 50.000 21.47 0.00 0.00 4.11
1963 4826 2.852449 TGAGCTCATTCATAGGGGGTTT 59.148 45.455 13.74 0.00 0.00 3.27
1964 4827 4.044308 TGAGCTCATTCATAGGGGGTTTA 58.956 43.478 13.74 0.00 0.00 2.01
1965 4828 4.141482 TGAGCTCATTCATAGGGGGTTTAC 60.141 45.833 13.74 0.00 0.00 2.01
1966 4829 3.785887 AGCTCATTCATAGGGGGTTTACA 59.214 43.478 0.00 0.00 0.00 2.41
1967 4830 4.229582 AGCTCATTCATAGGGGGTTTACAA 59.770 41.667 0.00 0.00 0.00 2.41
1968 4831 4.338400 GCTCATTCATAGGGGGTTTACAAC 59.662 45.833 0.00 0.00 0.00 3.32
1969 4832 5.755849 CTCATTCATAGGGGGTTTACAACT 58.244 41.667 0.00 0.00 0.00 3.16
1970 4833 5.505780 TCATTCATAGGGGGTTTACAACTG 58.494 41.667 0.00 0.00 0.00 3.16
1971 4834 5.251932 TCATTCATAGGGGGTTTACAACTGA 59.748 40.000 0.00 0.00 0.00 3.41
1972 4835 5.586155 TTCATAGGGGGTTTACAACTGAA 57.414 39.130 0.00 0.00 0.00 3.02
1973 4836 5.174037 TCATAGGGGGTTTACAACTGAAG 57.826 43.478 0.00 0.00 0.00 3.02
1974 4837 4.847512 TCATAGGGGGTTTACAACTGAAGA 59.152 41.667 0.00 0.00 0.00 2.87
1975 4838 3.503800 AGGGGGTTTACAACTGAAGAC 57.496 47.619 0.00 0.00 0.00 3.01
1976 4839 2.781174 AGGGGGTTTACAACTGAAGACA 59.219 45.455 0.00 0.00 0.00 3.41
1977 4840 3.397955 AGGGGGTTTACAACTGAAGACAT 59.602 43.478 0.00 0.00 0.00 3.06
1978 4841 4.141018 AGGGGGTTTACAACTGAAGACATT 60.141 41.667 0.00 0.00 0.00 2.71
1979 4842 5.073965 AGGGGGTTTACAACTGAAGACATTA 59.926 40.000 0.00 0.00 0.00 1.90
1980 4843 5.414765 GGGGGTTTACAACTGAAGACATTAG 59.585 44.000 0.00 0.00 0.00 1.73
1981 4844 5.414765 GGGGTTTACAACTGAAGACATTAGG 59.585 44.000 0.00 0.00 0.00 2.69
1982 4845 6.002082 GGGTTTACAACTGAAGACATTAGGT 58.998 40.000 0.00 0.00 0.00 3.08
1983 4846 6.489022 GGGTTTACAACTGAAGACATTAGGTT 59.511 38.462 0.00 0.00 0.00 3.50
1984 4847 7.662669 GGGTTTACAACTGAAGACATTAGGTTA 59.337 37.037 0.00 0.00 0.00 2.85
1985 4848 9.227777 GGTTTACAACTGAAGACATTAGGTTAT 57.772 33.333 0.00 0.00 0.00 1.89
1988 4851 9.653287 TTACAACTGAAGACATTAGGTTATGAG 57.347 33.333 0.00 0.00 0.00 2.90
1989 4852 6.595716 ACAACTGAAGACATTAGGTTATGAGC 59.404 38.462 0.00 0.00 0.00 4.26
1990 4853 5.675538 ACTGAAGACATTAGGTTATGAGCC 58.324 41.667 0.00 0.00 0.00 4.70
1991 4854 4.693283 TGAAGACATTAGGTTATGAGCCG 58.307 43.478 0.00 0.00 0.00 5.52
1992 4855 4.161565 TGAAGACATTAGGTTATGAGCCGT 59.838 41.667 0.00 0.00 0.00 5.68
1993 4856 4.060038 AGACATTAGGTTATGAGCCGTG 57.940 45.455 0.00 0.00 0.00 4.94
1994 4857 3.704566 AGACATTAGGTTATGAGCCGTGA 59.295 43.478 0.00 0.00 0.00 4.35
1995 4858 3.793559 ACATTAGGTTATGAGCCGTGAC 58.206 45.455 0.00 0.00 0.00 3.67
1996 4859 3.451178 ACATTAGGTTATGAGCCGTGACT 59.549 43.478 0.00 0.00 0.00 3.41
1997 4860 4.647853 ACATTAGGTTATGAGCCGTGACTA 59.352 41.667 0.00 0.00 0.00 2.59
1998 4861 5.304614 ACATTAGGTTATGAGCCGTGACTAT 59.695 40.000 0.00 0.00 0.00 2.12
1999 4862 6.492429 ACATTAGGTTATGAGCCGTGACTATA 59.508 38.462 0.00 0.00 0.00 1.31
2000 4863 7.178628 ACATTAGGTTATGAGCCGTGACTATAT 59.821 37.037 0.00 0.00 0.00 0.86
2001 4864 5.646577 AGGTTATGAGCCGTGACTATATC 57.353 43.478 0.00 0.00 0.00 1.63
2002 4865 5.077564 AGGTTATGAGCCGTGACTATATCA 58.922 41.667 0.00 0.00 33.79 2.15
2017 4880 7.649057 TGACTATATCACCAGACACTAAATCG 58.351 38.462 0.00 0.00 29.99 3.34
2018 4881 7.501225 TGACTATATCACCAGACACTAAATCGA 59.499 37.037 0.00 0.00 29.99 3.59
2019 4882 8.410673 ACTATATCACCAGACACTAAATCGAT 57.589 34.615 0.00 0.00 0.00 3.59
2020 4883 8.300286 ACTATATCACCAGACACTAAATCGATG 58.700 37.037 0.00 0.00 0.00 3.84
2021 4884 5.598416 ATCACCAGACACTAAATCGATGA 57.402 39.130 0.00 0.00 0.00 2.92
2022 4885 5.400066 TCACCAGACACTAAATCGATGAA 57.600 39.130 0.00 0.00 0.00 2.57
2023 4886 5.410924 TCACCAGACACTAAATCGATGAAG 58.589 41.667 0.00 1.87 0.00 3.02
2024 4887 5.185056 TCACCAGACACTAAATCGATGAAGA 59.815 40.000 12.81 0.00 0.00 2.87
2025 4888 5.869344 CACCAGACACTAAATCGATGAAGAA 59.131 40.000 12.81 0.00 0.00 2.52
2026 4889 6.536582 CACCAGACACTAAATCGATGAAGAAT 59.463 38.462 12.81 2.25 0.00 2.40
2027 4890 6.758886 ACCAGACACTAAATCGATGAAGAATC 59.241 38.462 12.81 9.53 0.00 2.52
2028 4891 6.983307 CCAGACACTAAATCGATGAAGAATCT 59.017 38.462 12.81 11.12 32.61 2.40
2029 4892 7.168972 CCAGACACTAAATCGATGAAGAATCTC 59.831 40.741 12.81 3.58 32.61 2.75
2030 4893 7.920151 CAGACACTAAATCGATGAAGAATCTCT 59.080 37.037 12.81 5.25 32.61 3.10
2031 4894 8.474025 AGACACTAAATCGATGAAGAATCTCTT 58.526 33.333 12.81 0.00 39.87 2.85
2032 4895 9.737427 GACACTAAATCGATGAAGAATCTCTTA 57.263 33.333 12.81 0.00 36.73 2.10
2033 4896 9.743057 ACACTAAATCGATGAAGAATCTCTTAG 57.257 33.333 12.81 8.78 36.73 2.18
2034 4897 9.958234 CACTAAATCGATGAAGAATCTCTTAGA 57.042 33.333 12.81 0.00 36.73 2.10
2039 4902 9.487790 AATCGATGAAGAATCTCTTAGAAATCC 57.512 33.333 0.00 0.00 36.73 3.01
2040 4903 8.011844 TCGATGAAGAATCTCTTAGAAATCCA 57.988 34.615 0.00 0.00 36.73 3.41
2041 4904 7.923344 TCGATGAAGAATCTCTTAGAAATCCAC 59.077 37.037 0.00 0.00 36.73 4.02
2042 4905 7.925483 CGATGAAGAATCTCTTAGAAATCCACT 59.075 37.037 0.00 0.00 36.73 4.00
2043 4906 9.612066 GATGAAGAATCTCTTAGAAATCCACTT 57.388 33.333 0.00 0.00 36.73 3.16
2044 4907 9.972106 ATGAAGAATCTCTTAGAAATCCACTTT 57.028 29.630 0.00 0.00 36.73 2.66
2045 4908 9.799106 TGAAGAATCTCTTAGAAATCCACTTTT 57.201 29.630 0.00 0.00 36.73 2.27
2117 4981 2.746362 GAGTTGAGAGTTGATGGCCAAG 59.254 50.000 10.96 0.00 35.03 3.61
2156 5020 4.923871 CACTACTCTCGCGGCATAATATTT 59.076 41.667 6.13 0.00 0.00 1.40
2164 5028 6.425417 TCTCGCGGCATAATATTTCACAAATA 59.575 34.615 6.13 0.00 37.71 1.40
2176 5040 0.239879 CACAAATACTTTGCGCCCGT 59.760 50.000 4.18 1.16 44.39 5.28
2236 5100 2.362120 CACTCCTACCGGGACCGT 60.362 66.667 6.32 0.84 39.58 4.83
2278 5142 2.484264 CGTTTCGCTCCTTCCAAATCTT 59.516 45.455 0.00 0.00 0.00 2.40
2316 5180 2.902457 AACGAAACCAGGGGGCGAT 61.902 57.895 4.37 0.00 37.90 4.58
2375 5239 2.633481 AGCCTTAACAGACTCGAAAGGT 59.367 45.455 10.62 0.00 39.15 3.50
2556 5421 2.507058 AGCCTATCAGCTGTCCAAATCA 59.493 45.455 14.67 0.00 42.95 2.57
2658 5524 2.566724 TCCATCAAACCAAGGAATTGGC 59.433 45.455 6.93 0.00 45.88 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.588096 GGGACTATATCAATCCATTTAAACCTT 57.412 33.333 0.00 0.00 33.87 3.50
14 15 9.170890 ACTCAAGGGACTATATCAATCCATTTA 57.829 33.333 0.00 0.00 38.49 1.40
15 16 8.050316 ACTCAAGGGACTATATCAATCCATTT 57.950 34.615 0.00 0.00 38.49 2.32
16 17 7.256835 GGACTCAAGGGACTATATCAATCCATT 60.257 40.741 0.00 0.00 38.49 3.16
17 18 6.214412 GGACTCAAGGGACTATATCAATCCAT 59.786 42.308 0.00 0.00 38.49 3.41
18 19 5.544176 GGACTCAAGGGACTATATCAATCCA 59.456 44.000 0.00 0.00 38.49 3.41
20 21 6.926630 AGGACTCAAGGGACTATATCAATC 57.073 41.667 0.00 0.00 38.49 2.67
21 22 6.439058 GCTAGGACTCAAGGGACTATATCAAT 59.561 42.308 0.00 0.00 38.49 2.57
22 23 5.775701 GCTAGGACTCAAGGGACTATATCAA 59.224 44.000 0.00 0.00 38.49 2.57
23 24 5.075205 AGCTAGGACTCAAGGGACTATATCA 59.925 44.000 0.00 0.00 38.49 2.15
24 25 5.576128 AGCTAGGACTCAAGGGACTATATC 58.424 45.833 0.00 0.00 38.49 1.63
25 26 5.608798 AGCTAGGACTCAAGGGACTATAT 57.391 43.478 0.00 0.00 38.49 0.86
26 27 5.141182 CAAGCTAGGACTCAAGGGACTATA 58.859 45.833 0.00 0.00 38.49 1.31
28 29 3.366396 CAAGCTAGGACTCAAGGGACTA 58.634 50.000 0.00 0.00 38.49 2.59
31 32 0.905357 GCAAGCTAGGACTCAAGGGA 59.095 55.000 0.00 0.00 0.00 4.20
32 33 0.615331 TGCAAGCTAGGACTCAAGGG 59.385 55.000 0.00 0.00 0.00 3.95
33 34 2.289945 ACTTGCAAGCTAGGACTCAAGG 60.290 50.000 26.27 0.00 36.26 3.61
35 36 3.492102 AACTTGCAAGCTAGGACTCAA 57.508 42.857 26.27 0.00 0.00 3.02
36 37 4.283467 TCTTAACTTGCAAGCTAGGACTCA 59.717 41.667 26.27 1.65 0.00 3.41
37 38 4.822026 TCTTAACTTGCAAGCTAGGACTC 58.178 43.478 26.27 0.00 0.00 3.36
38 39 4.891992 TCTTAACTTGCAAGCTAGGACT 57.108 40.909 26.27 1.65 0.00 3.85
41 42 5.157067 GCTTTTCTTAACTTGCAAGCTAGG 58.843 41.667 26.27 18.30 34.94 3.02
42 43 4.848299 CGCTTTTCTTAACTTGCAAGCTAG 59.152 41.667 26.27 19.07 35.51 3.42
44 45 3.632189 CGCTTTTCTTAACTTGCAAGCT 58.368 40.909 26.27 17.12 35.51 3.74
45 46 2.153817 GCGCTTTTCTTAACTTGCAAGC 59.846 45.455 26.27 8.00 34.54 4.01
46 47 3.371168 TGCGCTTTTCTTAACTTGCAAG 58.629 40.909 24.84 24.84 0.00 4.01
47 48 3.428746 TGCGCTTTTCTTAACTTGCAA 57.571 38.095 9.73 0.00 0.00 4.08
48 49 3.641437 ATGCGCTTTTCTTAACTTGCA 57.359 38.095 9.73 0.00 35.35 4.08
49 50 4.027377 GCATATGCGCTTTTCTTAACTTGC 60.027 41.667 12.82 0.00 0.00 4.01
51 52 4.399303 AGGCATATGCGCTTTTCTTAACTT 59.601 37.500 21.04 0.00 43.26 2.66
52 53 3.947834 AGGCATATGCGCTTTTCTTAACT 59.052 39.130 21.04 5.34 43.26 2.24
53 54 4.292977 AGGCATATGCGCTTTTCTTAAC 57.707 40.909 21.04 3.04 43.26 2.01
54 55 4.202010 GGAAGGCATATGCGCTTTTCTTAA 60.202 41.667 23.62 0.00 43.26 1.85
56 57 2.099756 GGAAGGCATATGCGCTTTTCTT 59.900 45.455 23.62 18.59 43.26 2.52
57 58 1.678101 GGAAGGCATATGCGCTTTTCT 59.322 47.619 23.62 12.59 43.26 2.52
58 59 1.597937 CGGAAGGCATATGCGCTTTTC 60.598 52.381 23.62 20.45 43.26 2.29
59 60 0.381801 CGGAAGGCATATGCGCTTTT 59.618 50.000 23.62 15.30 43.26 2.27
60 61 0.748005 ACGGAAGGCATATGCGCTTT 60.748 50.000 23.62 17.25 43.26 3.51
62 63 1.595382 GACGGAAGGCATATGCGCT 60.595 57.895 21.04 15.82 43.26 5.92
67 68 2.029073 CGCGGACGGAAGGCATAT 59.971 61.111 0.00 0.00 45.40 1.78
68 69 4.884257 GCGCGGACGGAAGGCATA 62.884 66.667 8.83 0.00 45.40 3.14
133 134 1.635817 GCAAGGGCTAGGATCCACCA 61.636 60.000 15.82 0.00 37.92 4.17
181 182 8.614994 ACACAAAATCTAACAAAACTCGAAAG 57.385 30.769 0.00 0.00 0.00 2.62
199 200 0.181587 TTCCCGAGCAGGACACAAAA 59.818 50.000 0.00 0.00 45.00 2.44
214 215 1.041437 CCTACCATCCTCGTCTTCCC 58.959 60.000 0.00 0.00 0.00 3.97
225 226 1.794714 TCTTCAGGGAGCCTACCATC 58.205 55.000 0.00 0.00 29.64 3.51
226 227 2.053244 CATCTTCAGGGAGCCTACCAT 58.947 52.381 0.00 0.00 29.64 3.55
227 228 1.500474 CATCTTCAGGGAGCCTACCA 58.500 55.000 0.00 0.00 29.64 3.25
230 231 2.568546 TTCCATCTTCAGGGAGCCTA 57.431 50.000 0.00 0.00 34.02 3.93
254 256 2.114616 CAGGGGCTAGACTGTGAGAAT 58.885 52.381 0.00 0.00 0.00 2.40
262 264 2.042843 CGGGACAGGGGCTAGACT 60.043 66.667 0.00 0.00 0.00 3.24
332 340 1.492176 AGATCCGAGCAAATCCACCAT 59.508 47.619 0.00 0.00 0.00 3.55
362 370 2.743636 AGACACACCAACATAGACGG 57.256 50.000 0.00 0.00 0.00 4.79
373 381 4.137543 AGAATCAAACCTGAAGACACACC 58.862 43.478 0.00 0.00 34.49 4.16
402 410 2.223611 CCGACGATGAAGAGTAGCGTAT 59.776 50.000 0.00 0.00 40.55 3.06
420 428 3.177600 GCAGAAAGCAATCGCCGA 58.822 55.556 0.00 0.00 44.79 5.54
451 460 2.125673 CGTCGTGGTAAGGCCCTG 60.126 66.667 0.00 0.00 36.04 4.45
461 470 2.126580 GTCGGGAAGTCGTCGTGG 60.127 66.667 0.00 0.00 0.00 4.94
481 490 4.364860 GGGCAAAACTTGTTGTATTTCGT 58.635 39.130 0.00 0.00 0.00 3.85
483 492 4.443063 GTCGGGCAAAACTTGTTGTATTTC 59.557 41.667 0.00 0.00 0.00 2.17
485 494 3.634910 AGTCGGGCAAAACTTGTTGTATT 59.365 39.130 0.00 0.00 0.00 1.89
648 659 8.996024 TTTTCTTTTCCGAGAAAAACTTTCAT 57.004 26.923 9.60 0.00 46.80 2.57
661 672 9.699703 TTTCTTTTCTTTTCTTTTCTTTTCCGA 57.300 25.926 0.00 0.00 0.00 4.55
662 673 9.958285 CTTTCTTTTCTTTTCTTTTCTTTTCCG 57.042 29.630 0.00 0.00 0.00 4.30
669 680 9.599866 TCAATCCCTTTCTTTTCTTTTCTTTTC 57.400 29.630 0.00 0.00 0.00 2.29
731 742 9.181061 GAGGTTAGAGTGACTACTTTCTAGATT 57.819 37.037 0.00 0.00 37.25 2.40
733 744 6.817641 CGAGGTTAGAGTGACTACTTTCTAGA 59.182 42.308 0.00 0.00 37.25 2.43
734 745 6.037391 CCGAGGTTAGAGTGACTACTTTCTAG 59.963 46.154 0.00 0.00 37.25 2.43
735 746 5.879223 CCGAGGTTAGAGTGACTACTTTCTA 59.121 44.000 0.00 0.00 37.25 2.10
736 747 4.701171 CCGAGGTTAGAGTGACTACTTTCT 59.299 45.833 0.00 0.00 37.25 2.52
737 748 4.699257 TCCGAGGTTAGAGTGACTACTTTC 59.301 45.833 0.00 0.00 37.25 2.62
738 749 4.660168 TCCGAGGTTAGAGTGACTACTTT 58.340 43.478 0.00 0.00 37.25 2.66
740 751 3.996921 TCCGAGGTTAGAGTGACTACT 57.003 47.619 0.00 0.00 40.66 2.57
741 752 4.197750 TGATCCGAGGTTAGAGTGACTAC 58.802 47.826 0.00 0.00 0.00 2.73
742 753 4.498894 TGATCCGAGGTTAGAGTGACTA 57.501 45.455 0.00 0.00 0.00 2.59
744 755 4.174762 GTTTGATCCGAGGTTAGAGTGAC 58.825 47.826 0.00 0.00 0.00 3.67
745 756 3.830178 TGTTTGATCCGAGGTTAGAGTGA 59.170 43.478 0.00 0.00 0.00 3.41
746 757 4.188247 TGTTTGATCCGAGGTTAGAGTG 57.812 45.455 0.00 0.00 0.00 3.51
747 758 4.322801 CCTTGTTTGATCCGAGGTTAGAGT 60.323 45.833 0.00 0.00 0.00 3.24
748 759 4.184629 CCTTGTTTGATCCGAGGTTAGAG 58.815 47.826 0.00 0.00 0.00 2.43
749 760 3.055385 CCCTTGTTTGATCCGAGGTTAGA 60.055 47.826 3.78 0.00 0.00 2.10
750 761 3.270877 CCCTTGTTTGATCCGAGGTTAG 58.729 50.000 3.78 0.00 0.00 2.34
753 764 0.328258 CCCCTTGTTTGATCCGAGGT 59.672 55.000 3.78 0.00 0.00 3.85
754 765 1.032114 GCCCCTTGTTTGATCCGAGG 61.032 60.000 0.00 0.00 0.00 4.63
755 766 1.369091 CGCCCCTTGTTTGATCCGAG 61.369 60.000 0.00 0.00 0.00 4.63
756 767 1.376683 CGCCCCTTGTTTGATCCGA 60.377 57.895 0.00 0.00 0.00 4.55
757 768 0.391927 TACGCCCCTTGTTTGATCCG 60.392 55.000 0.00 0.00 0.00 4.18
758 769 1.065709 TCTACGCCCCTTGTTTGATCC 60.066 52.381 0.00 0.00 0.00 3.36
760 771 1.906574 TCTCTACGCCCCTTGTTTGAT 59.093 47.619 0.00 0.00 0.00 2.57
761 772 1.344065 TCTCTACGCCCCTTGTTTGA 58.656 50.000 0.00 0.00 0.00 2.69
762 773 2.178912 TTCTCTACGCCCCTTGTTTG 57.821 50.000 0.00 0.00 0.00 2.93
763 774 2.882761 GTTTTCTCTACGCCCCTTGTTT 59.117 45.455 0.00 0.00 0.00 2.83
764 775 2.501261 GTTTTCTCTACGCCCCTTGTT 58.499 47.619 0.00 0.00 0.00 2.83
765 776 1.271217 GGTTTTCTCTACGCCCCTTGT 60.271 52.381 0.00 0.00 0.00 3.16
766 777 1.450025 GGTTTTCTCTACGCCCCTTG 58.550 55.000 0.00 0.00 0.00 3.61
767 778 0.036671 CGGTTTTCTCTACGCCCCTT 60.037 55.000 0.00 0.00 0.00 3.95
769 780 0.738762 GACGGTTTTCTCTACGCCCC 60.739 60.000 0.00 0.00 0.00 5.80
770 781 0.738762 GGACGGTTTTCTCTACGCCC 60.739 60.000 0.00 0.00 0.00 6.13
771 782 0.245813 AGGACGGTTTTCTCTACGCC 59.754 55.000 0.00 0.00 0.00 5.68
772 783 1.068055 TGAGGACGGTTTTCTCTACGC 60.068 52.381 8.00 0.00 0.00 4.42
773 784 2.030540 TGTGAGGACGGTTTTCTCTACG 60.031 50.000 8.00 0.00 0.00 3.51
774 785 3.255149 TCTGTGAGGACGGTTTTCTCTAC 59.745 47.826 8.00 6.05 0.00 2.59
776 787 2.297597 CTCTGTGAGGACGGTTTTCTCT 59.702 50.000 8.00 0.00 0.00 3.10
790 801 2.276116 GCTGGACGGTCCTCTGTGA 61.276 63.158 26.41 5.64 37.46 3.58
791 802 2.099652 TTGCTGGACGGTCCTCTGTG 62.100 60.000 26.41 12.81 37.46 3.66
792 803 1.407656 TTTGCTGGACGGTCCTCTGT 61.408 55.000 26.41 0.00 37.46 3.41
793 804 0.036010 ATTTGCTGGACGGTCCTCTG 60.036 55.000 26.41 17.16 37.46 3.35
794 805 1.568504 TATTTGCTGGACGGTCCTCT 58.431 50.000 26.41 8.42 37.46 3.69
795 806 2.622064 ATATTTGCTGGACGGTCCTC 57.378 50.000 26.41 18.19 37.46 3.71
796 807 3.366052 AAATATTTGCTGGACGGTCCT 57.634 42.857 26.41 8.99 37.46 3.85
797 808 5.570234 TTAAAATATTTGCTGGACGGTCC 57.430 39.130 20.36 20.36 36.96 4.46
798 809 8.185505 TGTTATTAAAATATTTGCTGGACGGTC 58.814 33.333 0.39 0.00 0.00 4.79
800 811 8.967218 CATGTTATTAAAATATTTGCTGGACGG 58.033 33.333 0.39 0.00 0.00 4.79
801 812 8.967218 CCATGTTATTAAAATATTTGCTGGACG 58.033 33.333 0.39 0.00 0.00 4.79
815 826 9.535878 GTTGTTTTGGAGTTCCATGTTATTAAA 57.464 29.630 0.93 0.00 46.97 1.52
820 831 5.888724 TCTGTTGTTTTGGAGTTCCATGTTA 59.111 36.000 0.93 0.00 46.97 2.41
821 832 4.709397 TCTGTTGTTTTGGAGTTCCATGTT 59.291 37.500 0.93 0.00 46.97 2.71
822 833 4.277476 TCTGTTGTTTTGGAGTTCCATGT 58.723 39.130 0.93 0.00 46.97 3.21
823 834 4.261741 CCTCTGTTGTTTTGGAGTTCCATG 60.262 45.833 0.93 0.00 46.97 3.66
824 835 3.891366 CCTCTGTTGTTTTGGAGTTCCAT 59.109 43.478 0.93 0.00 46.97 3.41
825 836 3.287222 CCTCTGTTGTTTTGGAGTTCCA 58.713 45.455 0.00 0.00 45.94 3.53
826 837 2.034685 GCCTCTGTTGTTTTGGAGTTCC 59.965 50.000 0.00 0.00 0.00 3.62
827 838 2.287009 CGCCTCTGTTGTTTTGGAGTTC 60.287 50.000 0.00 0.00 0.00 3.01
828 839 1.676006 CGCCTCTGTTGTTTTGGAGTT 59.324 47.619 0.00 0.00 0.00 3.01
829 840 1.308998 CGCCTCTGTTGTTTTGGAGT 58.691 50.000 0.00 0.00 0.00 3.85
831 842 0.465460 AGCGCCTCTGTTGTTTTGGA 60.465 50.000 2.29 0.00 0.00 3.53
832 843 1.234821 TAGCGCCTCTGTTGTTTTGG 58.765 50.000 2.29 0.00 0.00 3.28
833 844 2.650608 GTTAGCGCCTCTGTTGTTTTG 58.349 47.619 2.29 0.00 0.00 2.44
835 846 0.865769 CGTTAGCGCCTCTGTTGTTT 59.134 50.000 2.29 0.00 0.00 2.83
836 847 0.949105 CCGTTAGCGCCTCTGTTGTT 60.949 55.000 2.29 0.00 36.67 2.83
837 848 1.374252 CCGTTAGCGCCTCTGTTGT 60.374 57.895 2.29 0.00 36.67 3.32
841 852 2.740714 GCAACCGTTAGCGCCTCTG 61.741 63.158 2.29 0.00 36.67 3.35
842 853 2.434359 GCAACCGTTAGCGCCTCT 60.434 61.111 2.29 0.00 36.67 3.69
848 859 2.468532 CACGTCGCAACCGTTAGC 59.531 61.111 0.00 0.00 36.17 3.09
850 861 2.356075 CCCACGTCGCAACCGTTA 60.356 61.111 0.00 0.00 36.17 3.18
860 871 2.813908 GTCATGTCCGCCCACGTC 60.814 66.667 0.00 0.00 37.70 4.34
861 872 4.388499 GGTCATGTCCGCCCACGT 62.388 66.667 0.00 0.00 37.70 4.49
862 873 4.386951 TGGTCATGTCCGCCCACG 62.387 66.667 4.48 0.00 39.67 4.94
863 874 2.436646 CTGGTCATGTCCGCCCAC 60.437 66.667 4.48 0.00 0.00 4.61
866 877 2.821366 CTGCTGGTCATGTCCGCC 60.821 66.667 17.60 7.31 0.00 6.13
867 878 3.503363 GCTGCTGGTCATGTCCGC 61.503 66.667 15.00 15.00 0.00 5.54
868 879 2.046988 TGCTGCTGGTCATGTCCG 60.047 61.111 4.48 1.15 0.00 4.79
869 880 2.404995 GCTGCTGCTGGTCATGTCC 61.405 63.158 8.53 1.55 36.03 4.02
872 883 2.697761 GGTGCTGCTGCTGGTCATG 61.698 63.158 17.00 0.00 40.48 3.07
874 885 4.994471 CGGTGCTGCTGCTGGTCA 62.994 66.667 17.00 0.00 40.48 4.02
956 3741 4.760715 GCGTGTTGTATATAGAGAGGAGGA 59.239 45.833 0.00 0.00 0.00 3.71
959 3744 4.132336 ACGCGTGTTGTATATAGAGAGGA 58.868 43.478 12.93 0.00 0.00 3.71
960 3745 4.485024 ACGCGTGTTGTATATAGAGAGG 57.515 45.455 12.93 0.00 0.00 3.69
965 3787 3.290748 TGCGTACGCGTGTTGTATATAG 58.709 45.455 32.65 0.00 45.51 1.31
982 3804 0.247736 GTGGATCTTGGAGACTGCGT 59.752 55.000 0.00 0.00 0.00 5.24
987 3809 1.135333 GGAGTCGTGGATCTTGGAGAC 59.865 57.143 0.00 0.00 0.00 3.36
1077 3899 0.683412 TGGAGATGATGCTCGGGATG 59.317 55.000 0.00 0.00 35.74 3.51
1150 3976 3.027029 GAGAAAATTAAATCGCGGTCGC 58.973 45.455 6.13 5.16 35.26 5.19
1151 3977 4.267928 AGAGAGAAAATTAAATCGCGGTCG 59.732 41.667 6.13 0.00 0.00 4.79
1328 4190 0.032017 ACTCCTCTAGGTGGCCGAAT 60.032 55.000 0.00 0.00 36.34 3.34
1340 4202 2.120718 AGCCACCGGAACTCCTCT 59.879 61.111 9.46 0.00 0.00 3.69
1501 4363 4.880426 GGGAGGGATCAGGGGCGA 62.880 72.222 0.00 0.00 0.00 5.54
1532 4394 1.453379 AGATCACGGATCGGACGGT 60.453 57.895 7.35 0.00 43.17 4.83
1563 4425 3.821055 AGGCAGAGCGAGCGAGAC 61.821 66.667 0.00 0.00 0.00 3.36
1564 4426 3.819920 CAGGCAGAGCGAGCGAGA 61.820 66.667 0.00 0.00 0.00 4.04
1569 4431 2.635229 AATACGGCAGGCAGAGCGAG 62.635 60.000 0.00 0.00 0.00 5.03
1570 4432 2.629050 GAATACGGCAGGCAGAGCGA 62.629 60.000 0.00 0.00 0.00 4.93
1571 4433 2.202932 AATACGGCAGGCAGAGCG 60.203 61.111 0.00 0.00 0.00 5.03
1572 4434 0.462759 AAGAATACGGCAGGCAGAGC 60.463 55.000 0.00 0.00 0.00 4.09
1573 4435 1.667724 CAAAGAATACGGCAGGCAGAG 59.332 52.381 0.00 0.00 0.00 3.35
1574 4436 1.277842 TCAAAGAATACGGCAGGCAGA 59.722 47.619 0.00 0.00 0.00 4.26
1575 4437 1.737838 TCAAAGAATACGGCAGGCAG 58.262 50.000 0.00 0.00 0.00 4.85
1576 4438 2.418368 ATCAAAGAATACGGCAGGCA 57.582 45.000 0.00 0.00 0.00 4.75
1577 4439 2.796032 GCAATCAAAGAATACGGCAGGC 60.796 50.000 0.00 0.00 0.00 4.85
1616 4478 2.093921 GGGAAAGGAGAAAGAGACGGAG 60.094 54.545 0.00 0.00 0.00 4.63
1619 4481 2.416162 CGAGGGAAAGGAGAAAGAGACG 60.416 54.545 0.00 0.00 0.00 4.18
1636 4498 2.480416 CGACTTTGGAGGAGATTCGAGG 60.480 54.545 0.00 0.00 0.00 4.63
1637 4499 2.803451 CGACTTTGGAGGAGATTCGAG 58.197 52.381 0.00 0.00 0.00 4.04
1702 4564 4.161001 GCAAATCTGGATCCCAATCAAGTT 59.839 41.667 9.90 0.00 34.87 2.66
1703 4565 3.703052 GCAAATCTGGATCCCAATCAAGT 59.297 43.478 9.90 0.00 34.87 3.16
1704 4566 3.958798 AGCAAATCTGGATCCCAATCAAG 59.041 43.478 9.90 0.00 34.62 3.02
1705 4567 3.985127 AGCAAATCTGGATCCCAATCAA 58.015 40.909 9.90 0.00 33.21 2.57
1706 4568 3.675348 AGCAAATCTGGATCCCAATCA 57.325 42.857 9.90 0.00 33.21 2.57
1710 4572 2.827322 CACAAAGCAAATCTGGATCCCA 59.173 45.455 9.90 0.00 0.00 4.37
1718 4580 9.578439 GCTTAAGAAATATCACAAAGCAAATCT 57.422 29.630 6.67 0.00 37.07 2.40
1719 4581 8.526681 CGCTTAAGAAATATCACAAAGCAAATC 58.473 33.333 6.67 0.00 36.99 2.17
1720 4582 7.489113 CCGCTTAAGAAATATCACAAAGCAAAT 59.511 33.333 6.67 0.00 36.99 2.32
1729 4591 9.612620 CCAATAATTCCGCTTAAGAAATATCAC 57.387 33.333 6.67 0.00 0.00 3.06
1738 4600 6.316390 AGTCAAGACCAATAATTCCGCTTAAG 59.684 38.462 0.00 0.00 0.00 1.85
1778 4640 7.481798 CAGTACACAACTTTTTGACTTTCAGTC 59.518 37.037 0.00 0.00 40.15 3.51
1783 4645 7.653647 TGAACAGTACACAACTTTTTGACTTT 58.346 30.769 0.00 0.00 35.76 2.66
1785 4647 6.811253 TGAACAGTACACAACTTTTTGACT 57.189 33.333 0.00 0.00 35.76 3.41
1786 4648 7.081976 ACTTGAACAGTACACAACTTTTTGAC 58.918 34.615 0.00 0.00 35.76 3.18
1787 4649 7.174253 AGACTTGAACAGTACACAACTTTTTGA 59.826 33.333 0.00 0.00 35.76 2.69
1788 4650 7.271223 CAGACTTGAACAGTACACAACTTTTTG 59.729 37.037 0.00 0.00 35.76 2.44
1789 4651 7.174253 TCAGACTTGAACAGTACACAACTTTTT 59.826 33.333 0.00 0.00 35.76 1.94
1826 4689 2.324330 CGGGCAGTGTCGCAATCAA 61.324 57.895 0.00 0.00 0.00 2.57
1829 4692 3.049674 CACGGGCAGTGTCGCAAT 61.050 61.111 9.75 0.00 45.51 3.56
1841 4704 5.296780 ACTTAAAGTATGATTGATGCACGGG 59.703 40.000 0.00 0.00 0.00 5.28
1854 4717 9.730420 GCATGGGTACAAATAACTTAAAGTATG 57.270 33.333 0.00 0.00 0.00 2.39
1855 4718 9.469097 TGCATGGGTACAAATAACTTAAAGTAT 57.531 29.630 0.00 0.00 0.00 2.12
1856 4719 8.865420 TGCATGGGTACAAATAACTTAAAGTA 57.135 30.769 0.00 0.00 0.00 2.24
1857 4720 7.768807 TGCATGGGTACAAATAACTTAAAGT 57.231 32.000 0.00 0.00 0.00 2.66
1858 4721 9.301153 GAATGCATGGGTACAAATAACTTAAAG 57.699 33.333 0.00 0.00 0.00 1.85
1859 4722 8.807118 TGAATGCATGGGTACAAATAACTTAAA 58.193 29.630 0.00 0.00 0.00 1.52
1860 4723 8.247562 GTGAATGCATGGGTACAAATAACTTAA 58.752 33.333 0.00 0.00 0.00 1.85
1861 4724 7.147983 GGTGAATGCATGGGTACAAATAACTTA 60.148 37.037 0.00 0.00 0.00 2.24
1862 4725 6.350949 GGTGAATGCATGGGTACAAATAACTT 60.351 38.462 0.00 0.00 0.00 2.66
1863 4726 5.127031 GGTGAATGCATGGGTACAAATAACT 59.873 40.000 0.00 0.00 0.00 2.24
1864 4727 5.105554 TGGTGAATGCATGGGTACAAATAAC 60.106 40.000 0.00 0.00 0.00 1.89
1865 4728 5.019470 TGGTGAATGCATGGGTACAAATAA 58.981 37.500 0.00 0.00 0.00 1.40
1866 4729 4.604156 TGGTGAATGCATGGGTACAAATA 58.396 39.130 0.00 0.00 0.00 1.40
1867 4730 3.439154 TGGTGAATGCATGGGTACAAAT 58.561 40.909 0.00 0.00 0.00 2.32
1868 4731 2.881734 TGGTGAATGCATGGGTACAAA 58.118 42.857 0.00 0.00 0.00 2.83
1869 4732 2.593925 TGGTGAATGCATGGGTACAA 57.406 45.000 0.00 0.00 0.00 2.41
1870 4733 2.224992 ACTTGGTGAATGCATGGGTACA 60.225 45.455 0.00 0.00 0.00 2.90
1871 4734 2.446435 ACTTGGTGAATGCATGGGTAC 58.554 47.619 0.00 0.00 0.00 3.34
1872 4735 2.824936 CAACTTGGTGAATGCATGGGTA 59.175 45.455 0.00 0.00 0.00 3.69
1873 4736 1.619827 CAACTTGGTGAATGCATGGGT 59.380 47.619 0.00 0.00 0.00 4.51
1874 4737 1.619827 ACAACTTGGTGAATGCATGGG 59.380 47.619 0.00 0.00 0.00 4.00
1875 4738 3.389925 AACAACTTGGTGAATGCATGG 57.610 42.857 0.00 0.00 0.00 3.66
1876 4739 4.236935 GGTAACAACTTGGTGAATGCATG 58.763 43.478 0.00 0.00 0.00 4.06
1877 4740 3.258123 GGGTAACAACTTGGTGAATGCAT 59.742 43.478 0.00 0.00 39.74 3.96
1878 4741 2.625790 GGGTAACAACTTGGTGAATGCA 59.374 45.455 0.00 0.00 39.74 3.96
1879 4742 2.625790 TGGGTAACAACTTGGTGAATGC 59.374 45.455 0.00 0.00 39.74 3.56
1880 4743 3.304391 CGTGGGTAACAACTTGGTGAATG 60.304 47.826 0.00 0.00 39.74 2.67
1881 4744 2.882137 CGTGGGTAACAACTTGGTGAAT 59.118 45.455 0.00 0.00 39.74 2.57
1882 4745 2.290464 CGTGGGTAACAACTTGGTGAA 58.710 47.619 0.00 0.00 39.74 3.18
1883 4746 1.956297 CGTGGGTAACAACTTGGTGA 58.044 50.000 0.00 0.00 39.74 4.02
1884 4747 0.309612 GCGTGGGTAACAACTTGGTG 59.690 55.000 0.00 0.00 39.74 4.17
1885 4748 0.181824 AGCGTGGGTAACAACTTGGT 59.818 50.000 0.00 0.00 39.74 3.67
1886 4749 0.591170 CAGCGTGGGTAACAACTTGG 59.409 55.000 0.00 0.00 39.74 3.61
1887 4750 1.588674 TCAGCGTGGGTAACAACTTG 58.411 50.000 0.00 0.00 39.74 3.16
1888 4751 2.218603 CTTCAGCGTGGGTAACAACTT 58.781 47.619 0.00 0.00 39.74 2.66
1889 4752 1.878953 CTTCAGCGTGGGTAACAACT 58.121 50.000 0.00 0.00 39.74 3.16
1890 4753 0.237498 GCTTCAGCGTGGGTAACAAC 59.763 55.000 0.00 0.00 39.74 3.32
1891 4754 2.624169 GCTTCAGCGTGGGTAACAA 58.376 52.632 0.00 0.00 39.74 2.83
1892 4755 4.371975 GCTTCAGCGTGGGTAACA 57.628 55.556 0.00 0.00 39.74 2.41
1902 4765 5.883661 TGCAGTGAAATTATAAGCTTCAGC 58.116 37.500 0.00 12.06 42.49 4.26
1903 4766 5.970023 GCTGCAGTGAAATTATAAGCTTCAG 59.030 40.000 16.64 0.00 30.00 3.02
1904 4767 5.415389 TGCTGCAGTGAAATTATAAGCTTCA 59.585 36.000 16.64 8.14 0.00 3.02
1905 4768 5.741040 GTGCTGCAGTGAAATTATAAGCTTC 59.259 40.000 16.64 0.00 0.00 3.86
1906 4769 5.183713 TGTGCTGCAGTGAAATTATAAGCTT 59.816 36.000 16.64 3.48 0.00 3.74
1907 4770 4.701651 TGTGCTGCAGTGAAATTATAAGCT 59.298 37.500 16.64 0.00 0.00 3.74
1908 4771 4.795278 GTGTGCTGCAGTGAAATTATAAGC 59.205 41.667 16.64 0.00 0.00 3.09
1909 4772 5.023920 CGTGTGCTGCAGTGAAATTATAAG 58.976 41.667 16.64 0.00 0.00 1.73
1910 4773 4.671508 GCGTGTGCTGCAGTGAAATTATAA 60.672 41.667 16.64 0.00 38.39 0.98
1911 4774 3.181511 GCGTGTGCTGCAGTGAAATTATA 60.182 43.478 16.64 0.00 38.39 0.98
1912 4775 2.414559 GCGTGTGCTGCAGTGAAATTAT 60.415 45.455 16.64 0.00 38.39 1.28
1913 4776 1.069296 GCGTGTGCTGCAGTGAAATTA 60.069 47.619 16.64 0.00 38.39 1.40
1914 4777 0.318107 GCGTGTGCTGCAGTGAAATT 60.318 50.000 16.64 0.00 38.39 1.82
1915 4778 1.283793 GCGTGTGCTGCAGTGAAAT 59.716 52.632 16.64 0.00 38.39 2.17
1916 4779 2.715005 GCGTGTGCTGCAGTGAAA 59.285 55.556 16.64 0.00 38.39 2.69
1917 4780 2.962697 TACGCGTGTGCTGCAGTGAA 62.963 55.000 24.59 0.00 39.65 3.18
1918 4781 3.492311 TACGCGTGTGCTGCAGTGA 62.492 57.895 24.59 0.00 39.65 3.41
1919 4782 3.035503 TACGCGTGTGCTGCAGTG 61.036 61.111 24.59 0.34 39.65 3.66
1920 4783 3.036084 GTACGCGTGTGCTGCAGT 61.036 61.111 24.59 0.00 39.65 4.40
1921 4784 4.121227 CGTACGCGTGTGCTGCAG 62.121 66.667 24.59 10.11 39.65 4.41
1924 4787 4.121227 CTGCGTACGCGTGTGCTG 62.121 66.667 32.65 25.81 45.51 4.41
1925 4788 4.640855 ACTGCGTACGCGTGTGCT 62.641 61.111 32.65 14.03 45.51 4.40
1926 4789 4.409588 CACTGCGTACGCGTGTGC 62.410 66.667 35.25 24.76 45.51 4.57
1927 4790 2.707090 CTCACTGCGTACGCGTGTG 61.707 63.158 38.13 37.85 45.51 3.82
1928 4791 2.428569 CTCACTGCGTACGCGTGT 60.429 61.111 38.13 32.87 45.51 4.49
1929 4792 3.827784 GCTCACTGCGTACGCGTG 61.828 66.667 36.56 36.56 45.51 5.34
1938 4801 2.492012 CCCTATGAATGAGCTCACTGC 58.508 52.381 20.97 11.81 43.29 4.40
1939 4802 2.224475 CCCCCTATGAATGAGCTCACTG 60.224 54.545 20.97 5.59 0.00 3.66
1940 4803 2.053244 CCCCCTATGAATGAGCTCACT 58.947 52.381 20.97 8.44 0.00 3.41
1941 4804 1.771255 ACCCCCTATGAATGAGCTCAC 59.229 52.381 20.97 8.09 0.00 3.51
1942 4805 2.196742 ACCCCCTATGAATGAGCTCA 57.803 50.000 20.79 20.79 0.00 4.26
1943 4806 3.584733 AAACCCCCTATGAATGAGCTC 57.415 47.619 6.82 6.82 0.00 4.09
1944 4807 3.785887 TGTAAACCCCCTATGAATGAGCT 59.214 43.478 0.00 0.00 0.00 4.09
1945 4808 4.164843 TGTAAACCCCCTATGAATGAGC 57.835 45.455 0.00 0.00 0.00 4.26
1962 4825 9.653287 CTCATAACCTAATGTCTTCAGTTGTAA 57.347 33.333 0.00 0.00 0.00 2.41
1963 4826 7.764443 GCTCATAACCTAATGTCTTCAGTTGTA 59.236 37.037 0.00 0.00 0.00 2.41
1964 4827 6.595716 GCTCATAACCTAATGTCTTCAGTTGT 59.404 38.462 0.00 0.00 0.00 3.32
1965 4828 6.037610 GGCTCATAACCTAATGTCTTCAGTTG 59.962 42.308 0.00 0.00 0.00 3.16
1966 4829 6.116126 GGCTCATAACCTAATGTCTTCAGTT 58.884 40.000 0.00 0.00 0.00 3.16
1967 4830 5.675538 GGCTCATAACCTAATGTCTTCAGT 58.324 41.667 0.00 0.00 0.00 3.41
1968 4831 4.747108 CGGCTCATAACCTAATGTCTTCAG 59.253 45.833 0.00 0.00 0.00 3.02
1969 4832 4.161565 ACGGCTCATAACCTAATGTCTTCA 59.838 41.667 0.00 0.00 0.00 3.02
1970 4833 4.508124 CACGGCTCATAACCTAATGTCTTC 59.492 45.833 0.00 0.00 0.00 2.87
1971 4834 4.161565 TCACGGCTCATAACCTAATGTCTT 59.838 41.667 0.00 0.00 0.00 3.01
1972 4835 3.704566 TCACGGCTCATAACCTAATGTCT 59.295 43.478 0.00 0.00 0.00 3.41
1973 4836 3.802685 GTCACGGCTCATAACCTAATGTC 59.197 47.826 0.00 0.00 0.00 3.06
1974 4837 3.451178 AGTCACGGCTCATAACCTAATGT 59.549 43.478 0.00 0.00 0.00 2.71
1975 4838 4.060038 AGTCACGGCTCATAACCTAATG 57.940 45.455 0.00 0.00 0.00 1.90
1976 4839 7.396339 TGATATAGTCACGGCTCATAACCTAAT 59.604 37.037 0.00 0.00 0.00 1.73
1977 4840 6.717997 TGATATAGTCACGGCTCATAACCTAA 59.282 38.462 0.00 0.00 0.00 2.69
1978 4841 6.150641 GTGATATAGTCACGGCTCATAACCTA 59.849 42.308 0.00 0.00 46.99 3.08
1979 4842 5.047943 GTGATATAGTCACGGCTCATAACCT 60.048 44.000 0.00 0.00 46.99 3.50
1980 4843 5.162075 GTGATATAGTCACGGCTCATAACC 58.838 45.833 0.00 0.00 46.99 2.85
1992 4855 7.501225 TCGATTTAGTGTCTGGTGATATAGTCA 59.499 37.037 0.00 0.00 0.00 3.41
1993 4856 7.872881 TCGATTTAGTGTCTGGTGATATAGTC 58.127 38.462 0.00 0.00 0.00 2.59
1994 4857 7.818997 TCGATTTAGTGTCTGGTGATATAGT 57.181 36.000 0.00 0.00 0.00 2.12
1995 4858 8.515414 TCATCGATTTAGTGTCTGGTGATATAG 58.485 37.037 0.00 0.00 0.00 1.31
1996 4859 8.404107 TCATCGATTTAGTGTCTGGTGATATA 57.596 34.615 0.00 0.00 0.00 0.86
1997 4860 7.290110 TCATCGATTTAGTGTCTGGTGATAT 57.710 36.000 0.00 0.00 0.00 1.63
1998 4861 6.709018 TCATCGATTTAGTGTCTGGTGATA 57.291 37.500 0.00 0.00 0.00 2.15
1999 4862 5.598416 TCATCGATTTAGTGTCTGGTGAT 57.402 39.130 0.00 0.00 0.00 3.06
2000 4863 5.185056 TCTTCATCGATTTAGTGTCTGGTGA 59.815 40.000 0.00 0.00 0.00 4.02
2001 4864 5.410924 TCTTCATCGATTTAGTGTCTGGTG 58.589 41.667 0.00 0.00 0.00 4.17
2002 4865 5.661056 TCTTCATCGATTTAGTGTCTGGT 57.339 39.130 0.00 0.00 0.00 4.00
2003 4866 6.983307 AGATTCTTCATCGATTTAGTGTCTGG 59.017 38.462 0.00 0.00 36.93 3.86
2004 4867 7.920151 AGAGATTCTTCATCGATTTAGTGTCTG 59.080 37.037 0.00 0.00 36.93 3.51
2005 4868 8.006298 AGAGATTCTTCATCGATTTAGTGTCT 57.994 34.615 0.00 4.53 36.93 3.41
2006 4869 8.641499 AAGAGATTCTTCATCGATTTAGTGTC 57.359 34.615 0.00 0.00 36.93 3.67
2007 4870 9.743057 CTAAGAGATTCTTCATCGATTTAGTGT 57.257 33.333 0.00 0.00 37.89 3.55
2008 4871 9.958234 TCTAAGAGATTCTTCATCGATTTAGTG 57.042 33.333 0.00 0.00 37.89 2.74
2013 4876 9.487790 GGATTTCTAAGAGATTCTTCATCGATT 57.512 33.333 0.00 0.00 37.89 3.34
2014 4877 8.646004 TGGATTTCTAAGAGATTCTTCATCGAT 58.354 33.333 0.00 0.00 37.89 3.59
2015 4878 7.923344 GTGGATTTCTAAGAGATTCTTCATCGA 59.077 37.037 0.00 0.00 37.89 3.59
2016 4879 7.925483 AGTGGATTTCTAAGAGATTCTTCATCG 59.075 37.037 0.00 0.00 37.89 3.84
2017 4880 9.612066 AAGTGGATTTCTAAGAGATTCTTCATC 57.388 33.333 0.00 0.00 37.89 2.92
2018 4881 9.972106 AAAGTGGATTTCTAAGAGATTCTTCAT 57.028 29.630 0.00 0.00 37.89 2.57
2019 4882 9.799106 AAAAGTGGATTTCTAAGAGATTCTTCA 57.201 29.630 0.00 0.00 37.89 3.02
2101 4965 1.034292 GCCCTTGGCCATCAACTCTC 61.034 60.000 6.09 0.00 44.06 3.20
2164 5028 0.743345 GATCCTTACGGGCGCAAAGT 60.743 55.000 10.83 8.40 34.39 2.66
2176 5040 3.206150 GAATGCTCGCTTTGGATCCTTA 58.794 45.455 14.23 0.00 0.00 2.69
2181 5045 2.928334 AGATGAATGCTCGCTTTGGAT 58.072 42.857 0.00 0.00 0.00 3.41
2236 5100 1.731160 CGCGGGTTTTCGGTAATACAA 59.269 47.619 0.00 0.00 0.00 2.41
2278 5142 3.490439 TGATGTTGCTTGTCTCTTGGA 57.510 42.857 0.00 0.00 0.00 3.53
2316 5180 0.179059 ACGCATATGACCCAATCGCA 60.179 50.000 6.97 0.00 0.00 5.10
2375 5239 0.825425 TTCAACTTGCGGATTGGGCA 60.825 50.000 0.00 0.00 38.93 5.36
2439 5303 3.357079 CCAGTGCAGGTTCACCGC 61.357 66.667 0.00 6.03 42.08 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.