Multiple sequence alignment - TraesCS1B01G086300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G086300 chr1B 100.000 4856 0 0 1 4856 72031327 72026472 0.000000e+00 8968.0
1 TraesCS1B01G086300 chr1B 91.176 68 5 1 922 989 31367180 31367114 1.860000e-14 91.6
2 TraesCS1B01G086300 chr1D 90.032 1264 96 12 2652 3914 50907127 50908361 0.000000e+00 1609.0
3 TraesCS1B01G086300 chr1D 91.156 735 58 7 1013 1743 50905669 50906400 0.000000e+00 990.0
4 TraesCS1B01G086300 chr1D 85.086 409 52 6 1750 2152 50906335 50906740 4.520000e-110 409.0
5 TraesCS1B01G086300 chr1D 87.594 266 18 8 147 411 50905061 50905312 1.320000e-75 294.0
6 TraesCS1B01G086300 chr1D 89.674 184 15 2 2262 2443 50906772 50906953 1.050000e-56 231.0
7 TraesCS1B01G086300 chr1D 89.381 113 12 0 2516 2628 50906952 50907064 5.070000e-30 143.0
8 TraesCS1B01G086300 chr1D 90.909 99 9 0 642 740 50905446 50905544 3.050000e-27 134.0
9 TraesCS1B01G086300 chr1D 97.222 72 2 0 752 823 50905529 50905600 6.600000e-24 122.0
10 TraesCS1B01G086300 chr1D 83.333 132 15 4 460 585 50905316 50905446 1.100000e-21 115.0
11 TraesCS1B01G086300 chr1D 88.000 75 7 2 916 989 201494979 201495052 2.410000e-13 87.9
12 TraesCS1B01G086300 chr5B 97.737 928 17 2 3933 4856 56188089 56187162 0.000000e+00 1594.0
13 TraesCS1B01G086300 chr5B 97.091 928 23 2 3933 4856 487333428 487334355 0.000000e+00 1561.0
14 TraesCS1B01G086300 chr5B 90.193 622 55 5 2655 3272 239397542 239396923 0.000000e+00 806.0
15 TraesCS1B01G086300 chr5B 79.666 359 40 11 2231 2583 239398033 239397702 1.360000e-55 228.0
16 TraesCS1B01G086300 chr5B 94.059 101 6 0 1 101 43967151 43967251 2.340000e-33 154.0
17 TraesCS1B01G086300 chr5B 94.000 100 6 0 1 100 698400219 698400120 8.420000e-33 152.0
18 TraesCS1B01G086300 chr5B 80.488 82 13 2 2164 2245 239398168 239398090 5.250000e-05 60.2
19 TraesCS1B01G086300 chr2B 97.294 924 22 2 3935 4856 740736348 740737270 0.000000e+00 1565.0
20 TraesCS1B01G086300 chr2B 96.013 928 34 2 3932 4856 27587756 27588683 0.000000e+00 1506.0
21 TraesCS1B01G086300 chr2B 95.568 925 37 3 3935 4856 560343764 560342841 0.000000e+00 1478.0
22 TraesCS1B01G086300 chr2B 87.049 610 63 2 2663 3272 184134040 184133447 0.000000e+00 675.0
23 TraesCS1B01G086300 chr2B 78.393 361 43 12 2231 2583 184134544 184134211 8.240000e-48 202.0
24 TraesCS1B01G086300 chr2B 96.117 103 4 0 1 103 147409203 147409101 8.360000e-38 169.0
25 TraesCS1B01G086300 chr2B 96.040 101 4 0 1 101 708393721 708393621 1.080000e-36 165.0
26 TraesCS1B01G086300 chr2D 96.559 930 24 4 3935 4856 637610776 637611705 0.000000e+00 1533.0
27 TraesCS1B01G086300 chr1A 90.325 1137 98 9 2693 3828 49970302 49971427 0.000000e+00 1480.0
28 TraesCS1B01G086300 chr1A 88.016 751 81 8 1003 1748 49967214 49967960 0.000000e+00 880.0
29 TraesCS1B01G086300 chr1A 94.789 403 15 3 4460 4856 97181599 97181197 1.480000e-174 623.0
30 TraesCS1B01G086300 chr1A 91.353 266 19 2 147 411 49965539 49965801 1.280000e-95 361.0
31 TraesCS1B01G086300 chr1A 97.087 103 3 0 1 103 6510642 6510744 1.800000e-39 174.0
32 TraesCS1B01G086300 chr1A 83.529 170 22 4 544 712 49965927 49966091 2.340000e-33 154.0
33 TraesCS1B01G086300 chr1A 79.798 198 30 7 1750 1942 49967892 49968084 8.480000e-28 135.0
34 TraesCS1B01G086300 chr1A 80.110 181 19 12 752 917 49967036 49967214 8.540000e-23 119.0
35 TraesCS1B01G086300 chr1A 100.000 37 0 0 369 405 49965808 49965844 8.720000e-08 69.4
36 TraesCS1B01G086300 chr7B 94.283 927 35 5 3935 4856 60854336 60853423 0.000000e+00 1402.0
37 TraesCS1B01G086300 chr3A 94.175 927 36 6 3934 4856 694101259 694102171 0.000000e+00 1397.0
38 TraesCS1B01G086300 chr4B 83.155 843 140 2 2721 3562 527113566 527112725 0.000000e+00 769.0
39 TraesCS1B01G086300 chr4D 82.604 845 141 5 2721 3562 428978647 428977806 0.000000e+00 741.0
40 TraesCS1B01G086300 chr4A 81.257 843 156 2 2721 3562 37284843 37285684 0.000000e+00 680.0
41 TraesCS1B01G086300 chr4A 94.949 99 5 0 2 100 719285551 719285649 6.510000e-34 156.0
42 TraesCS1B01G086300 chr4A 93.939 99 6 0 2 100 719510306 719510404 3.030000e-32 150.0
43 TraesCS1B01G086300 chr4A 90.141 71 6 1 919 989 596708550 596708619 1.860000e-14 91.6
44 TraesCS1B01G086300 chr6B 97.059 102 3 0 1 102 51536883 51536984 6.460000e-39 172.0
45 TraesCS1B01G086300 chr6B 94.000 100 6 0 1 100 21913535 21913436 8.420000e-33 152.0
46 TraesCS1B01G086300 chr2A 87.500 88 10 1 922 1009 763251944 763252030 3.090000e-17 100.0
47 TraesCS1B01G086300 chr2A 86.250 80 10 1 3933 4011 385319247 385319326 8.660000e-13 86.1
48 TraesCS1B01G086300 chr2A 89.706 68 6 1 922 989 611961490 611961424 8.660000e-13 86.1
49 TraesCS1B01G086300 chr2A 84.524 84 13 0 922 1005 28816476 28816559 3.110000e-12 84.2
50 TraesCS1B01G086300 chrUn 90.141 71 6 1 919 989 134112270 134112339 1.860000e-14 91.6
51 TraesCS1B01G086300 chr6D 91.176 68 5 1 922 989 159233559 159233493 1.860000e-14 91.6
52 TraesCS1B01G086300 chr7A 88.732 71 7 1 919 989 105214815 105214884 8.660000e-13 86.1
53 TraesCS1B01G086300 chr7D 90.000 60 5 1 4252 4311 606446869 606446811 5.210000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G086300 chr1B 72026472 72031327 4855 True 8968.000000 8968 100.000000 1 4856 1 chr1B.!!$R2 4855
1 TraesCS1B01G086300 chr1D 50905061 50908361 3300 False 449.666667 1609 89.376333 147 3914 9 chr1D.!!$F2 3767
2 TraesCS1B01G086300 chr5B 56187162 56188089 927 True 1594.000000 1594 97.737000 3933 4856 1 chr5B.!!$R1 923
3 TraesCS1B01G086300 chr5B 487333428 487334355 927 False 1561.000000 1561 97.091000 3933 4856 1 chr5B.!!$F2 923
4 TraesCS1B01G086300 chr5B 239396923 239398168 1245 True 364.733333 806 83.449000 2164 3272 3 chr5B.!!$R3 1108
5 TraesCS1B01G086300 chr2B 740736348 740737270 922 False 1565.000000 1565 97.294000 3935 4856 1 chr2B.!!$F2 921
6 TraesCS1B01G086300 chr2B 27587756 27588683 927 False 1506.000000 1506 96.013000 3932 4856 1 chr2B.!!$F1 924
7 TraesCS1B01G086300 chr2B 560342841 560343764 923 True 1478.000000 1478 95.568000 3935 4856 1 chr2B.!!$R2 921
8 TraesCS1B01G086300 chr2B 184133447 184134544 1097 True 438.500000 675 82.721000 2231 3272 2 chr2B.!!$R4 1041
9 TraesCS1B01G086300 chr2D 637610776 637611705 929 False 1533.000000 1533 96.559000 3935 4856 1 chr2D.!!$F1 921
10 TraesCS1B01G086300 chr1A 49965539 49971427 5888 False 456.914286 1480 87.590143 147 3828 7 chr1A.!!$F2 3681
11 TraesCS1B01G086300 chr7B 60853423 60854336 913 True 1402.000000 1402 94.283000 3935 4856 1 chr7B.!!$R1 921
12 TraesCS1B01G086300 chr3A 694101259 694102171 912 False 1397.000000 1397 94.175000 3934 4856 1 chr3A.!!$F1 922
13 TraesCS1B01G086300 chr4B 527112725 527113566 841 True 769.000000 769 83.155000 2721 3562 1 chr4B.!!$R1 841
14 TraesCS1B01G086300 chr4D 428977806 428978647 841 True 741.000000 741 82.604000 2721 3562 1 chr4D.!!$R1 841
15 TraesCS1B01G086300 chr4A 37284843 37285684 841 False 680.000000 680 81.257000 2721 3562 1 chr4A.!!$F1 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.252197 GCCCTGTTCCGGTAGTGAAT 59.748 55.0 0.00 0.00 0.00 2.57 F
1219 2206 0.168788 AACGGCATTGATCGTGCTTG 59.831 50.0 18.67 14.65 42.16 4.01 F
2414 3819 0.032952 GCCATATGCCAATGCCAGTG 59.967 55.0 0.00 0.00 36.33 3.66 F
3156 5760 0.034896 ACTACCTCAACGTGCCCAAG 59.965 55.0 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 2355 0.105964 CCAAGAACTCGTCCACCACA 59.894 55.000 0.0 0.0 0.00 4.17 R
2526 3931 0.036388 AACGCCACATCAGAATCGGT 60.036 50.000 0.0 0.0 0.00 4.69 R
3453 6057 0.172803 GCCACACGTACCTCGAATCT 59.827 55.000 0.0 0.0 42.86 2.40 R
4190 6808 2.176364 AGCTGGATTGTGGATTGCCTAT 59.824 45.455 0.0 0.0 34.31 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.903855 GCCGATGGCCTGGACATG 60.904 66.667 22.32 12.09 44.06 3.21
18 19 2.203252 CCGATGGCCTGGACATGG 60.203 66.667 22.32 19.29 27.61 3.66
25 26 4.838152 CCTGGACATGGCCGTCGG 62.838 72.222 14.43 9.68 36.73 4.79
48 49 3.747266 CCTAGACTAGGCCGACGG 58.253 66.667 15.67 10.29 39.48 4.79
49 50 1.897615 CCTAGACTAGGCCGACGGG 60.898 68.421 17.22 0.56 39.48 5.28
50 51 1.897615 CTAGACTAGGCCGACGGGG 60.898 68.421 17.22 0.00 39.58 5.73
51 52 3.426309 TAGACTAGGCCGACGGGGG 62.426 68.421 17.22 0.00 35.78 5.40
94 95 4.856801 CATCGGGCCCTGTTCCGG 62.857 72.222 22.43 1.43 45.69 5.14
96 97 3.988050 ATCGGGCCCTGTTCCGGTA 62.988 63.158 22.43 0.00 45.69 4.02
97 98 4.157120 CGGGCCCTGTTCCGGTAG 62.157 72.222 22.43 0.00 42.32 3.18
98 99 3.007323 GGGCCCTGTTCCGGTAGT 61.007 66.667 17.04 0.00 0.00 2.73
99 100 2.267961 GGCCCTGTTCCGGTAGTG 59.732 66.667 0.00 0.00 0.00 2.74
100 101 2.288025 GGCCCTGTTCCGGTAGTGA 61.288 63.158 0.00 0.00 0.00 3.41
101 102 1.675219 GCCCTGTTCCGGTAGTGAA 59.325 57.895 0.00 0.00 0.00 3.18
102 103 0.252197 GCCCTGTTCCGGTAGTGAAT 59.748 55.000 0.00 0.00 0.00 2.57
103 104 2.012051 GCCCTGTTCCGGTAGTGAATG 61.012 57.143 0.00 0.00 0.00 2.67
104 105 1.553248 CCCTGTTCCGGTAGTGAATGA 59.447 52.381 0.00 0.00 0.00 2.57
105 106 2.027561 CCCTGTTCCGGTAGTGAATGAA 60.028 50.000 0.00 0.00 0.00 2.57
106 107 3.000727 CCTGTTCCGGTAGTGAATGAAC 58.999 50.000 0.00 0.00 36.67 3.18
107 108 2.666508 CTGTTCCGGTAGTGAATGAACG 59.333 50.000 0.00 0.00 38.46 3.95
108 109 1.997606 GTTCCGGTAGTGAATGAACGG 59.002 52.381 0.00 0.00 42.45 4.44
109 110 1.259609 TCCGGTAGTGAATGAACGGT 58.740 50.000 0.00 0.00 41.82 4.83
110 111 1.619827 TCCGGTAGTGAATGAACGGTT 59.380 47.619 0.00 0.00 41.82 4.44
111 112 2.037511 TCCGGTAGTGAATGAACGGTTT 59.962 45.455 0.00 0.00 41.82 3.27
112 113 3.257873 TCCGGTAGTGAATGAACGGTTTA 59.742 43.478 0.00 0.00 41.82 2.01
113 114 3.615496 CCGGTAGTGAATGAACGGTTTAG 59.385 47.826 0.00 0.00 36.78 1.85
114 115 4.240096 CGGTAGTGAATGAACGGTTTAGT 58.760 43.478 0.00 0.00 0.00 2.24
115 116 4.687483 CGGTAGTGAATGAACGGTTTAGTT 59.313 41.667 0.00 0.00 36.99 2.24
116 117 5.389098 CGGTAGTGAATGAACGGTTTAGTTG 60.389 44.000 0.00 0.00 34.00 3.16
117 118 5.106830 GGTAGTGAATGAACGGTTTAGTTGG 60.107 44.000 0.00 0.00 34.00 3.77
118 119 4.457466 AGTGAATGAACGGTTTAGTTGGT 58.543 39.130 0.00 0.00 34.00 3.67
119 120 5.613329 AGTGAATGAACGGTTTAGTTGGTA 58.387 37.500 0.00 0.00 34.00 3.25
120 121 6.056884 AGTGAATGAACGGTTTAGTTGGTAA 58.943 36.000 0.00 0.00 34.00 2.85
121 122 6.543100 AGTGAATGAACGGTTTAGTTGGTAAA 59.457 34.615 0.00 0.00 34.00 2.01
122 123 7.067251 AGTGAATGAACGGTTTAGTTGGTAAAA 59.933 33.333 0.00 0.00 32.22 1.52
123 124 7.863877 GTGAATGAACGGTTTAGTTGGTAAAAT 59.136 33.333 0.00 0.00 32.22 1.82
124 125 8.414778 TGAATGAACGGTTTAGTTGGTAAAATT 58.585 29.630 0.00 0.00 32.22 1.82
125 126 9.251792 GAATGAACGGTTTAGTTGGTAAAATTT 57.748 29.630 0.00 0.00 32.22 1.82
126 127 8.806177 ATGAACGGTTTAGTTGGTAAAATTTC 57.194 30.769 0.00 0.00 32.22 2.17
127 128 7.998580 TGAACGGTTTAGTTGGTAAAATTTCT 58.001 30.769 0.00 0.00 32.22 2.52
128 129 8.130469 TGAACGGTTTAGTTGGTAAAATTTCTC 58.870 33.333 0.00 0.00 32.22 2.87
129 130 7.571080 ACGGTTTAGTTGGTAAAATTTCTCA 57.429 32.000 0.00 0.00 32.22 3.27
130 131 7.420002 ACGGTTTAGTTGGTAAAATTTCTCAC 58.580 34.615 0.00 0.00 32.22 3.51
131 132 6.859508 CGGTTTAGTTGGTAAAATTTCTCACC 59.140 38.462 8.81 8.81 32.22 4.02
132 133 7.255346 CGGTTTAGTTGGTAAAATTTCTCACCT 60.255 37.037 14.30 5.06 32.22 4.00
133 134 9.070179 GGTTTAGTTGGTAAAATTTCTCACCTA 57.930 33.333 14.30 7.14 32.22 3.08
134 135 9.888878 GTTTAGTTGGTAAAATTTCTCACCTAC 57.111 33.333 16.36 16.36 37.15 3.18
135 136 6.796705 AGTTGGTAAAATTTCTCACCTACG 57.203 37.500 17.26 0.00 40.35 3.51
136 137 5.704053 AGTTGGTAAAATTTCTCACCTACGG 59.296 40.000 17.26 0.00 40.35 4.02
137 138 5.486735 TGGTAAAATTTCTCACCTACGGA 57.513 39.130 14.30 0.00 32.04 4.69
138 139 6.057321 TGGTAAAATTTCTCACCTACGGAT 57.943 37.500 14.30 0.00 32.04 4.18
139 140 6.110707 TGGTAAAATTTCTCACCTACGGATC 58.889 40.000 14.30 0.00 32.04 3.36
140 141 5.233689 GGTAAAATTTCTCACCTACGGATCG 59.766 44.000 8.57 0.00 0.00 3.69
141 142 2.510768 ATTTCTCACCTACGGATCGC 57.489 50.000 0.00 0.00 0.00 4.58
142 143 0.458669 TTTCTCACCTACGGATCGCC 59.541 55.000 0.00 0.00 0.00 5.54
143 144 0.395311 TTCTCACCTACGGATCGCCT 60.395 55.000 0.00 0.00 0.00 5.52
144 145 1.101635 TCTCACCTACGGATCGCCTG 61.102 60.000 0.00 0.00 0.00 4.85
145 146 2.076622 CTCACCTACGGATCGCCTGG 62.077 65.000 0.00 0.00 0.00 4.45
150 151 1.797211 CTACGGATCGCCTGGTCTCC 61.797 65.000 0.00 0.00 0.00 3.71
223 225 2.607750 TGGACCTCCAGACCCAGC 60.608 66.667 0.00 0.00 42.01 4.85
224 226 3.403558 GGACCTCCAGACCCAGCC 61.404 72.222 0.00 0.00 35.64 4.85
248 250 4.684134 GCAAGGGAAGGGCCTGCA 62.684 66.667 15.08 0.00 37.67 4.41
351 353 2.125350 GCTCCTGCTTCCGGTCTG 60.125 66.667 0.00 0.00 36.03 3.51
411 413 5.435291 CCTAGGTACGAACTCCTCTTCTTA 58.565 45.833 0.00 0.00 35.51 2.10
412 414 5.884792 CCTAGGTACGAACTCCTCTTCTTAA 59.115 44.000 0.00 0.00 35.51 1.85
413 415 5.900865 AGGTACGAACTCCTCTTCTTAAG 57.099 43.478 0.00 0.00 0.00 1.85
414 416 5.323581 AGGTACGAACTCCTCTTCTTAAGT 58.676 41.667 1.63 0.00 0.00 2.24
415 417 6.479884 AGGTACGAACTCCTCTTCTTAAGTA 58.520 40.000 1.63 0.00 0.00 2.24
416 418 7.118060 AGGTACGAACTCCTCTTCTTAAGTAT 58.882 38.462 1.63 0.00 0.00 2.12
417 419 7.614974 AGGTACGAACTCCTCTTCTTAAGTATT 59.385 37.037 1.63 0.00 0.00 1.89
419 421 9.934190 GTACGAACTCCTCTTCTTAAGTATTAG 57.066 37.037 1.63 0.00 0.00 1.73
420 422 8.578448 ACGAACTCCTCTTCTTAAGTATTAGT 57.422 34.615 1.63 0.00 0.00 2.24
441 464 8.997621 TTAGTACTAGTATTCCTTTGCTGTTG 57.002 34.615 5.75 0.00 0.00 3.33
442 465 7.241042 AGTACTAGTATTCCTTTGCTGTTGA 57.759 36.000 5.75 0.00 0.00 3.18
443 466 7.324178 AGTACTAGTATTCCTTTGCTGTTGAG 58.676 38.462 5.75 0.00 0.00 3.02
444 467 6.360370 ACTAGTATTCCTTTGCTGTTGAGA 57.640 37.500 0.00 0.00 0.00 3.27
445 468 6.769512 ACTAGTATTCCTTTGCTGTTGAGAA 58.230 36.000 0.00 0.00 0.00 2.87
448 471 6.917533 AGTATTCCTTTGCTGTTGAGAATTG 58.082 36.000 0.00 0.00 0.00 2.32
449 472 6.716628 AGTATTCCTTTGCTGTTGAGAATTGA 59.283 34.615 0.00 0.00 0.00 2.57
450 473 5.443185 TTCCTTTGCTGTTGAGAATTGAG 57.557 39.130 0.00 0.00 0.00 3.02
451 474 4.717877 TCCTTTGCTGTTGAGAATTGAGA 58.282 39.130 0.00 0.00 0.00 3.27
453 476 5.771666 TCCTTTGCTGTTGAGAATTGAGATT 59.228 36.000 0.00 0.00 0.00 2.40
454 477 5.862323 CCTTTGCTGTTGAGAATTGAGATTG 59.138 40.000 0.00 0.00 0.00 2.67
455 478 6.294342 CCTTTGCTGTTGAGAATTGAGATTGA 60.294 38.462 0.00 0.00 0.00 2.57
456 479 6.829229 TTGCTGTTGAGAATTGAGATTGAT 57.171 33.333 0.00 0.00 0.00 2.57
457 480 6.190954 TGCTGTTGAGAATTGAGATTGATG 57.809 37.500 0.00 0.00 0.00 3.07
458 481 5.708697 TGCTGTTGAGAATTGAGATTGATGT 59.291 36.000 0.00 0.00 0.00 3.06
518 541 3.717294 GACCCGGCCAGGTGTCAT 61.717 66.667 17.68 0.00 41.42 3.06
521 544 3.716195 CCGGCCAGGTGTCATCCA 61.716 66.667 2.24 0.00 34.51 3.41
526 549 1.908340 GCCAGGTGTCATCCAGAGCT 61.908 60.000 0.00 0.00 0.00 4.09
535 558 2.993008 TCCAGAGCTGTGGATGGC 59.007 61.111 27.86 0.00 41.99 4.40
536 559 1.919816 TCCAGAGCTGTGGATGGCA 60.920 57.895 27.86 6.30 41.99 4.92
555 585 0.746563 AATGCCAACCCACGATACGG 60.747 55.000 0.00 0.00 0.00 4.02
567 597 1.522569 GATACGGGCAAGGCAGAGT 59.477 57.895 0.18 0.00 0.00 3.24
587 618 1.296392 GGCTTTGGTGGCCCATTTC 59.704 57.895 0.00 0.00 43.49 2.17
588 619 1.296392 GCTTTGGTGGCCCATTTCC 59.704 57.895 0.00 0.00 41.49 3.13
593 624 1.511613 TGGTGGCCCATTTCCAAAAA 58.488 45.000 0.00 0.00 35.17 1.94
618 649 1.005805 CCAACCCATCTGACCCATGAA 59.994 52.381 0.00 0.00 0.00 2.57
620 651 2.493278 CAACCCATCTGACCCATGAAAC 59.507 50.000 0.00 0.00 0.00 2.78
621 652 1.005924 ACCCATCTGACCCATGAAACC 59.994 52.381 0.00 0.00 0.00 3.27
622 653 1.285962 CCCATCTGACCCATGAAACCT 59.714 52.381 0.00 0.00 0.00 3.50
637 668 4.138290 TGAAACCTGTATTTTCGGCTTCA 58.862 39.130 0.00 0.00 35.99 3.02
639 670 3.418684 ACCTGTATTTTCGGCTTCAGT 57.581 42.857 0.00 0.00 0.00 3.41
649 680 0.319555 CGGCTTCAGTTTCTCGACCA 60.320 55.000 0.00 0.00 0.00 4.02
708 739 4.052229 CTTCGTCTCACCGGGCGT 62.052 66.667 6.32 0.00 0.00 5.68
734 1697 6.826893 TGCAGTTGATTTTAACAGCTTTTC 57.173 33.333 7.37 0.00 41.76 2.29
735 1698 5.458452 TGCAGTTGATTTTAACAGCTTTTCG 59.542 36.000 7.37 0.00 41.76 3.46
736 1699 5.685511 GCAGTTGATTTTAACAGCTTTTCGA 59.314 36.000 0.00 0.00 39.21 3.71
737 1700 6.198216 GCAGTTGATTTTAACAGCTTTTCGAA 59.802 34.615 0.00 0.00 39.21 3.71
738 1701 7.253950 GCAGTTGATTTTAACAGCTTTTCGAAA 60.254 33.333 6.47 6.47 39.21 3.46
739 1702 8.755018 CAGTTGATTTTAACAGCTTTTCGAAAT 58.245 29.630 12.12 0.00 33.02 2.17
740 1703 9.313118 AGTTGATTTTAACAGCTTTTCGAAATT 57.687 25.926 12.12 5.19 33.02 1.82
741 1704 9.567917 GTTGATTTTAACAGCTTTTCGAAATTC 57.432 29.630 12.12 6.61 0.00 2.17
742 1705 9.528018 TTGATTTTAACAGCTTTTCGAAATTCT 57.472 25.926 12.12 8.84 0.00 2.40
743 1706 9.528018 TGATTTTAACAGCTTTTCGAAATTCTT 57.472 25.926 12.12 2.30 0.00 2.52
744 1707 9.995379 GATTTTAACAGCTTTTCGAAATTCTTC 57.005 29.630 12.12 1.57 0.00 2.87
745 1708 9.750125 ATTTTAACAGCTTTTCGAAATTCTTCT 57.250 25.926 12.12 2.18 0.00 2.85
750 1713 9.581099 AACAGCTTTTCGAAATTCTTCTAAAAA 57.419 25.926 12.12 0.00 36.40 1.94
823 1786 5.106317 GGAATTTTCGACCAGTGAAATGCTA 60.106 40.000 0.00 0.00 35.43 3.49
825 1788 5.957842 TTTTCGACCAGTGAAATGCTAAT 57.042 34.783 0.00 0.00 35.43 1.73
828 1791 4.433615 TCGACCAGTGAAATGCTAATCTC 58.566 43.478 0.00 0.00 0.00 2.75
831 1794 5.339008 ACCAGTGAAATGCTAATCTCGTA 57.661 39.130 0.00 0.00 0.00 3.43
832 1795 5.352284 ACCAGTGAAATGCTAATCTCGTAG 58.648 41.667 0.00 0.00 0.00 3.51
833 1796 4.747108 CCAGTGAAATGCTAATCTCGTAGG 59.253 45.833 0.00 0.00 0.00 3.18
835 1798 5.689514 CAGTGAAATGCTAATCTCGTAGGAG 59.310 44.000 6.08 6.08 41.89 3.69
836 1799 5.361285 AGTGAAATGCTAATCTCGTAGGAGT 59.639 40.000 11.97 0.00 41.26 3.85
838 1801 7.231722 AGTGAAATGCTAATCTCGTAGGAGTAT 59.768 37.037 11.97 5.39 41.26 2.12
839 1802 7.868415 GTGAAATGCTAATCTCGTAGGAGTATT 59.132 37.037 11.97 11.93 41.26 1.89
841 1804 8.594881 AAATGCTAATCTCGTAGGAGTATTTG 57.405 34.615 11.97 11.41 41.26 2.32
845 1808 8.689061 TGCTAATCTCGTAGGAGTATTTGTTTA 58.311 33.333 11.97 0.00 41.26 2.01
846 1809 8.966194 GCTAATCTCGTAGGAGTATTTGTTTAC 58.034 37.037 11.97 0.00 41.26 2.01
848 1811 8.928270 AATCTCGTAGGAGTATTTGTTTACAG 57.072 34.615 11.97 0.00 41.26 2.74
849 1812 7.692460 TCTCGTAGGAGTATTTGTTTACAGA 57.308 36.000 11.97 0.00 41.26 3.41
850 1813 7.759465 TCTCGTAGGAGTATTTGTTTACAGAG 58.241 38.462 11.97 0.00 41.26 3.35
851 1814 6.860080 TCGTAGGAGTATTTGTTTACAGAGG 58.140 40.000 0.00 0.00 0.00 3.69
852 1815 6.040878 CGTAGGAGTATTTGTTTACAGAGGG 58.959 44.000 0.00 0.00 0.00 4.30
853 1816 6.127535 CGTAGGAGTATTTGTTTACAGAGGGA 60.128 42.308 0.00 0.00 0.00 4.20
854 1817 6.301169 AGGAGTATTTGTTTACAGAGGGAG 57.699 41.667 0.00 0.00 0.00 4.30
855 1818 5.785940 AGGAGTATTTGTTTACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
856 1819 6.958192 AGGAGTATTTGTTTACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
857 1820 7.124448 AGGAGTATTTGTTTACAGAGGGAGTAG 59.876 40.741 0.00 0.00 0.00 2.57
858 1821 7.123847 GGAGTATTTGTTTACAGAGGGAGTAGA 59.876 40.741 0.00 0.00 0.00 2.59
859 1822 8.611051 AGTATTTGTTTACAGAGGGAGTAGAT 57.389 34.615 0.00 0.00 0.00 1.98
866 1829 9.445878 TGTTTACAGAGGGAGTAGATATATACG 57.554 37.037 1.97 0.00 0.00 3.06
869 1832 9.833917 TTACAGAGGGAGTAGATATATACGATG 57.166 37.037 1.97 0.28 0.00 3.84
871 1834 7.771361 ACAGAGGGAGTAGATATATACGATGTG 59.229 40.741 1.97 2.19 0.00 3.21
872 1835 7.771361 CAGAGGGAGTAGATATATACGATGTGT 59.229 40.741 1.97 0.00 0.00 3.72
873 1836 7.771361 AGAGGGAGTAGATATATACGATGTGTG 59.229 40.741 1.97 0.00 0.00 3.82
874 1837 7.631007 AGGGAGTAGATATATACGATGTGTGA 58.369 38.462 1.97 0.00 0.00 3.58
916 1899 2.168106 ACAAGGCTGTTCATTGCACAAA 59.832 40.909 0.00 0.00 39.89 2.83
917 1900 3.196463 CAAGGCTGTTCATTGCACAAAA 58.804 40.909 0.00 0.00 29.21 2.44
918 1901 3.756933 AGGCTGTTCATTGCACAAAAT 57.243 38.095 0.00 0.00 0.00 1.82
919 1902 4.870123 AGGCTGTTCATTGCACAAAATA 57.130 36.364 0.00 0.00 0.00 1.40
920 1903 4.559153 AGGCTGTTCATTGCACAAAATAC 58.441 39.130 0.00 0.00 0.00 1.89
921 1904 4.281688 AGGCTGTTCATTGCACAAAATACT 59.718 37.500 0.00 0.00 0.00 2.12
922 1905 5.476599 AGGCTGTTCATTGCACAAAATACTA 59.523 36.000 0.00 0.00 0.00 1.82
923 1906 5.572896 GGCTGTTCATTGCACAAAATACTAC 59.427 40.000 0.00 0.00 0.00 2.73
924 1907 6.381801 GCTGTTCATTGCACAAAATACTACT 58.618 36.000 0.00 0.00 0.00 2.57
925 1908 6.524586 GCTGTTCATTGCACAAAATACTACTC 59.475 38.462 0.00 0.00 0.00 2.59
926 1909 6.908825 TGTTCATTGCACAAAATACTACTCC 58.091 36.000 0.00 0.00 0.00 3.85
927 1910 6.072175 TGTTCATTGCACAAAATACTACTCCC 60.072 38.462 0.00 0.00 0.00 4.30
928 1911 5.815581 TCATTGCACAAAATACTACTCCCT 58.184 37.500 0.00 0.00 0.00 4.20
929 1912 6.245408 TCATTGCACAAAATACTACTCCCTT 58.755 36.000 0.00 0.00 0.00 3.95
930 1913 6.374333 TCATTGCACAAAATACTACTCCCTTC 59.626 38.462 0.00 0.00 0.00 3.46
931 1914 5.235850 TGCACAAAATACTACTCCCTTCA 57.764 39.130 0.00 0.00 0.00 3.02
932 1915 5.815581 TGCACAAAATACTACTCCCTTCAT 58.184 37.500 0.00 0.00 0.00 2.57
933 1916 5.880332 TGCACAAAATACTACTCCCTTCATC 59.120 40.000 0.00 0.00 0.00 2.92
934 1917 5.297029 GCACAAAATACTACTCCCTTCATCC 59.703 44.000 0.00 0.00 0.00 3.51
935 1918 5.823045 CACAAAATACTACTCCCTTCATCCC 59.177 44.000 0.00 0.00 0.00 3.85
936 1919 5.731678 ACAAAATACTACTCCCTTCATCCCT 59.268 40.000 0.00 0.00 0.00 4.20
937 1920 6.217693 ACAAAATACTACTCCCTTCATCCCTT 59.782 38.462 0.00 0.00 0.00 3.95
938 1921 7.404980 ACAAAATACTACTCCCTTCATCCCTTA 59.595 37.037 0.00 0.00 0.00 2.69
939 1922 8.272173 CAAAATACTACTCCCTTCATCCCTTAA 58.728 37.037 0.00 0.00 0.00 1.85
940 1923 8.582891 AAATACTACTCCCTTCATCCCTTAAT 57.417 34.615 0.00 0.00 0.00 1.40
941 1924 9.684702 AAATACTACTCCCTTCATCCCTTAATA 57.315 33.333 0.00 0.00 0.00 0.98
942 1925 9.860393 AATACTACTCCCTTCATCCCTTAATAT 57.140 33.333 0.00 0.00 0.00 1.28
945 1928 9.684702 ACTACTCCCTTCATCCCTTAATATAAA 57.315 33.333 0.00 0.00 0.00 1.40
948 1931 9.813826 ACTCCCTTCATCCCTTAATATAAAATG 57.186 33.333 0.00 0.00 0.00 2.32
949 1932 9.813826 CTCCCTTCATCCCTTAATATAAAATGT 57.186 33.333 0.00 0.00 0.00 2.71
983 1966 8.973835 TTCAAATTGAACTACAAAAACGTCTT 57.026 26.923 4.03 0.00 42.03 3.01
1001 1984 9.708092 AAACGTCTTATATTAAGGAATAGAGGC 57.292 33.333 0.00 0.00 31.02 4.70
1028 2011 8.999220 GTAGTAGTACTACCTTTTTGCATTCT 57.001 34.615 25.97 8.29 43.96 2.40
1029 2012 7.907214 AGTAGTACTACCTTTTTGCATTCTG 57.093 36.000 25.97 0.00 36.75 3.02
1030 2013 7.450903 AGTAGTACTACCTTTTTGCATTCTGT 58.549 34.615 25.97 2.42 36.75 3.41
1035 2018 7.770801 ACTACCTTTTTGCATTCTGTTTTTC 57.229 32.000 0.00 0.00 0.00 2.29
1036 2019 7.555965 ACTACCTTTTTGCATTCTGTTTTTCT 58.444 30.769 0.00 0.00 0.00 2.52
1040 2023 5.721876 TTTTGCATTCTGTTTTTCTGCAG 57.278 34.783 7.63 7.63 43.07 4.41
1042 2025 5.512753 TTGCATTCTGTTTTTCTGCAGTA 57.487 34.783 14.67 0.00 43.07 2.74
1048 2031 5.845985 TCTGTTTTTCTGCAGTATTCGAG 57.154 39.130 14.67 5.02 34.57 4.04
1056 2039 1.550524 TGCAGTATTCGAGCTGAACCT 59.449 47.619 14.96 0.00 40.00 3.50
1084 2070 7.553881 TTTTATGAACTGCAGCTCCTATTAC 57.446 36.000 15.27 0.00 0.00 1.89
1087 2073 5.165961 TGAACTGCAGCTCCTATTACTTT 57.834 39.130 15.27 0.00 0.00 2.66
1147 2134 0.590195 GCAGCCAAGATCATTAGCCG 59.410 55.000 0.00 0.00 0.00 5.52
1150 2137 1.765314 AGCCAAGATCATTAGCCGTCT 59.235 47.619 0.00 0.00 0.00 4.18
1210 2197 1.070914 TGTGGTGTCTAACGGCATTGA 59.929 47.619 0.00 0.00 0.00 2.57
1213 2200 1.593006 GGTGTCTAACGGCATTGATCG 59.407 52.381 0.00 0.00 0.00 3.69
1219 2206 0.168788 AACGGCATTGATCGTGCTTG 59.831 50.000 18.67 14.65 42.16 4.01
1228 2215 5.801947 GCATTGATCGTGCTTGTTATTTTCT 59.198 36.000 13.81 0.00 39.45 2.52
1241 2228 8.730680 GCTTGTTATTTTCTACCTCTTCATCAA 58.269 33.333 0.00 0.00 0.00 2.57
1368 2355 0.905337 GGGAGCACAGGACACTACCT 60.905 60.000 0.00 0.00 41.43 3.08
1411 2398 1.482182 AGTCTTCTGCGGTGCATCATA 59.518 47.619 0.00 0.00 38.13 2.15
1423 2410 3.521560 GTGCATCATACGTTCTTCCAGA 58.478 45.455 0.00 0.00 0.00 3.86
1449 2436 1.152881 GGTGGCCATGGATCCAGTC 60.153 63.158 21.33 9.70 32.15 3.51
1452 2439 0.034186 TGGCCATGGATCCAGTCAAC 60.034 55.000 21.33 9.65 0.00 3.18
1453 2440 0.034186 GGCCATGGATCCAGTCAACA 60.034 55.000 21.33 0.00 0.00 3.33
1536 2523 0.107508 CGATCCAAGCTCATGGTGGT 60.108 55.000 4.36 0.00 41.46 4.16
1543 2530 1.073025 GCTCATGGTGGTGGTGTGA 59.927 57.895 0.00 0.00 0.00 3.58
1561 2548 5.185454 GTGTGATGTATGATGAGGAAACCA 58.815 41.667 0.00 0.00 0.00 3.67
1569 2556 4.553330 TGATGAGGAAACCAAGACCTAC 57.447 45.455 0.00 0.00 33.89 3.18
1572 2559 5.073144 TGATGAGGAAACCAAGACCTACTTT 59.927 40.000 0.00 0.00 36.61 2.66
1641 2628 1.136500 GGACCTGATCGGGTAAGTCAC 59.864 57.143 26.52 12.39 40.06 3.67
1644 2631 2.838202 ACCTGATCGGGTAAGTCACATT 59.162 45.455 25.35 0.00 37.90 2.71
1647 2634 4.253685 CTGATCGGGTAAGTCACATTGTT 58.746 43.478 0.00 0.00 0.00 2.83
1650 2637 3.659786 TCGGGTAAGTCACATTGTTCTG 58.340 45.455 0.00 0.00 0.00 3.02
1661 2648 5.400485 GTCACATTGTTCTGATGCTTTCAAC 59.600 40.000 0.00 0.00 32.78 3.18
1662 2649 5.067544 TCACATTGTTCTGATGCTTTCAACA 59.932 36.000 0.00 0.00 32.78 3.33
1665 2652 6.643770 ACATTGTTCTGATGCTTTCAACATTC 59.356 34.615 0.00 0.00 32.78 2.67
1722 2709 6.072112 AGGCACTGTAATTACACAAAAGTG 57.928 37.500 21.68 21.68 37.18 3.16
1723 2710 4.679654 GGCACTGTAATTACACAAAAGTGC 59.320 41.667 31.82 31.82 45.11 4.40
1724 2711 5.277825 GCACTGTAATTACACAAAAGTGCA 58.722 37.500 33.18 9.03 45.14 4.57
1725 2712 5.920273 GCACTGTAATTACACAAAAGTGCAT 59.080 36.000 33.18 6.14 45.14 3.96
1726 2713 6.088085 GCACTGTAATTACACAAAAGTGCATC 59.912 38.462 33.18 17.57 45.14 3.91
1727 2714 7.138081 CACTGTAATTACACAAAAGTGCATCA 58.862 34.615 14.35 0.00 31.93 3.07
1728 2715 7.809331 CACTGTAATTACACAAAAGTGCATCAT 59.191 33.333 14.35 0.00 31.93 2.45
1729 2716 8.359642 ACTGTAATTACACAAAAGTGCATCATT 58.640 29.630 14.35 0.00 31.93 2.57
1730 2717 8.741101 TGTAATTACACAAAAGTGCATCATTC 57.259 30.769 14.35 0.00 0.00 2.67
1731 2718 7.812191 TGTAATTACACAAAAGTGCATCATTCC 59.188 33.333 14.35 0.00 0.00 3.01
1732 2719 3.665745 ACACAAAAGTGCATCATTCCC 57.334 42.857 0.00 0.00 0.00 3.97
1733 2720 3.233507 ACACAAAAGTGCATCATTCCCT 58.766 40.909 0.00 0.00 0.00 4.20
1734 2721 3.642848 ACACAAAAGTGCATCATTCCCTT 59.357 39.130 0.00 0.00 0.00 3.95
1735 2722 3.991773 CACAAAAGTGCATCATTCCCTTG 59.008 43.478 0.00 0.00 0.00 3.61
1736 2723 3.642848 ACAAAAGTGCATCATTCCCTTGT 59.357 39.130 0.00 0.00 0.00 3.16
1737 2724 4.240096 CAAAAGTGCATCATTCCCTTGTC 58.760 43.478 0.00 0.00 0.00 3.18
1738 2725 2.885135 AGTGCATCATTCCCTTGTCA 57.115 45.000 0.00 0.00 0.00 3.58
1739 2726 2.719739 AGTGCATCATTCCCTTGTCAG 58.280 47.619 0.00 0.00 0.00 3.51
1740 2727 2.306805 AGTGCATCATTCCCTTGTCAGA 59.693 45.455 0.00 0.00 0.00 3.27
1741 2728 3.084039 GTGCATCATTCCCTTGTCAGAA 58.916 45.455 0.00 0.00 0.00 3.02
1742 2729 3.698040 GTGCATCATTCCCTTGTCAGAAT 59.302 43.478 0.00 0.00 32.95 2.40
1743 2730 4.883585 GTGCATCATTCCCTTGTCAGAATA 59.116 41.667 0.00 0.00 31.55 1.75
1744 2731 5.357878 GTGCATCATTCCCTTGTCAGAATAA 59.642 40.000 0.00 0.00 31.55 1.40
1745 2732 5.951148 TGCATCATTCCCTTGTCAGAATAAA 59.049 36.000 0.00 0.00 31.55 1.40
1746 2733 6.436847 TGCATCATTCCCTTGTCAGAATAAAA 59.563 34.615 0.00 0.00 31.55 1.52
1747 2734 7.124599 TGCATCATTCCCTTGTCAGAATAAAAT 59.875 33.333 0.00 0.00 31.55 1.82
1748 2735 7.650903 GCATCATTCCCTTGTCAGAATAAAATC 59.349 37.037 0.00 0.00 31.55 2.17
1749 2736 8.910944 CATCATTCCCTTGTCAGAATAAAATCT 58.089 33.333 0.00 0.00 31.55 2.40
1750 2737 8.284945 TCATTCCCTTGTCAGAATAAAATCTG 57.715 34.615 0.00 0.00 46.62 2.90
1751 2738 7.890127 TCATTCCCTTGTCAGAATAAAATCTGT 59.110 33.333 4.41 0.00 45.65 3.41
1752 2739 7.452880 TTCCCTTGTCAGAATAAAATCTGTG 57.547 36.000 4.41 0.00 45.65 3.66
1753 2740 6.542821 TCCCTTGTCAGAATAAAATCTGTGT 58.457 36.000 4.41 0.00 45.65 3.72
1754 2741 7.004086 TCCCTTGTCAGAATAAAATCTGTGTT 58.996 34.615 4.41 0.00 45.65 3.32
1755 2742 7.040478 TCCCTTGTCAGAATAAAATCTGTGTTG 60.040 37.037 4.41 0.00 45.65 3.33
1756 2743 7.040478 CCCTTGTCAGAATAAAATCTGTGTTGA 60.040 37.037 4.41 0.00 45.65 3.18
1757 2744 8.352201 CCTTGTCAGAATAAAATCTGTGTTGAA 58.648 33.333 4.41 0.00 45.65 2.69
1758 2745 9.390795 CTTGTCAGAATAAAATCTGTGTTGAAG 57.609 33.333 4.41 0.00 45.65 3.02
1759 2746 8.675705 TGTCAGAATAAAATCTGTGTTGAAGA 57.324 30.769 4.41 0.00 45.65 2.87
1760 2747 9.119418 TGTCAGAATAAAATCTGTGTTGAAGAA 57.881 29.630 4.41 0.00 45.65 2.52
1761 2748 9.387123 GTCAGAATAAAATCTGTGTTGAAGAAC 57.613 33.333 4.41 0.00 45.65 3.01
1762 2749 9.342308 TCAGAATAAAATCTGTGTTGAAGAACT 57.658 29.630 4.41 0.00 45.65 3.01
1763 2750 9.956720 CAGAATAAAATCTGTGTTGAAGAACTT 57.043 29.630 0.00 0.00 41.54 2.66
1765 2752 9.399403 GAATAAAATCTGTGTTGAAGAACTTCC 57.601 33.333 11.30 0.00 38.77 3.46
1766 2753 6.773976 AAAATCTGTGTTGAAGAACTTCCA 57.226 33.333 11.30 0.00 38.77 3.53
1767 2754 6.773976 AAATCTGTGTTGAAGAACTTCCAA 57.226 33.333 11.30 4.39 38.77 3.53
1768 2755 5.757850 ATCTGTGTTGAAGAACTTCCAAC 57.242 39.130 11.30 13.94 38.77 3.77
1769 2756 4.584874 TCTGTGTTGAAGAACTTCCAACA 58.415 39.130 18.58 18.58 38.77 3.33
1770 2757 5.192927 TCTGTGTTGAAGAACTTCCAACAT 58.807 37.500 21.94 0.00 39.83 2.71
1771 2758 5.652014 TCTGTGTTGAAGAACTTCCAACATT 59.348 36.000 21.94 0.00 39.83 2.71
1772 2759 5.649557 TGTGTTGAAGAACTTCCAACATTG 58.350 37.500 21.94 0.00 39.83 2.82
1773 2760 5.043248 GTGTTGAAGAACTTCCAACATTGG 58.957 41.667 21.94 4.11 39.83 3.16
1841 2828 8.361592 TGTAATAGCTAAATTTAGAGTTCGGC 57.638 34.615 26.00 11.45 32.47 5.54
1915 2907 3.072944 ACAGAACTGATTGAGCTGCTTC 58.927 45.455 2.53 0.00 0.00 3.86
1916 2908 2.419324 CAGAACTGATTGAGCTGCTTCC 59.581 50.000 2.53 0.00 0.00 3.46
1921 2913 2.555325 CTGATTGAGCTGCTTCCACAAA 59.445 45.455 2.53 0.00 0.00 2.83
1931 2923 1.069049 GCTTCCACAAACCTTGCACAT 59.931 47.619 0.00 0.00 0.00 3.21
1934 2926 2.382882 TCCACAAACCTTGCACATGAA 58.617 42.857 0.00 0.00 0.00 2.57
1938 2930 2.765699 ACAAACCTTGCACATGAACCTT 59.234 40.909 0.00 0.00 0.00 3.50
1940 2932 4.404073 ACAAACCTTGCACATGAACCTTAA 59.596 37.500 0.00 0.00 0.00 1.85
1941 2933 4.584327 AACCTTGCACATGAACCTTAAC 57.416 40.909 0.00 0.00 0.00 2.01
1942 2934 3.832527 ACCTTGCACATGAACCTTAACT 58.167 40.909 0.00 0.00 0.00 2.24
1943 2935 4.980573 ACCTTGCACATGAACCTTAACTA 58.019 39.130 0.00 0.00 0.00 2.24
1944 2936 4.760204 ACCTTGCACATGAACCTTAACTAC 59.240 41.667 0.00 0.00 0.00 2.73
2022 3014 4.579869 CCTTGCACATGAACCTAACTAGT 58.420 43.478 0.00 0.00 0.00 2.57
2044 3037 6.595682 AGTGCAAGTAGGCTTCATAATGTAT 58.404 36.000 0.00 0.00 31.49 2.29
2092 3086 2.793278 ACCATCAAAGGTCGTTTTGC 57.207 45.000 5.38 0.00 37.28 3.68
2108 3102 4.384846 CGTTTTGCGTCACTATAGTTGTCT 59.615 41.667 1.56 0.00 35.54 3.41
2111 3105 4.627611 TGCGTCACTATAGTTGTCTACC 57.372 45.455 1.56 0.00 0.00 3.18
2123 3117 2.169832 TGTCTACCTCTTGCTGCAAC 57.830 50.000 11.69 0.08 0.00 4.17
2142 3136 4.274069 CAACATTAAGGAATCATGTCGCG 58.726 43.478 0.00 0.00 30.58 5.87
2144 3138 3.555956 ACATTAAGGAATCATGTCGCGAC 59.444 43.478 31.66 31.66 0.00 5.19
2155 3149 3.719144 TCGCGACGCTCGACTGAA 61.719 61.111 19.02 0.00 43.74 3.02
2156 3150 3.524759 CGCGACGCTCGACTGAAC 61.525 66.667 19.02 0.00 43.74 3.18
2157 3151 2.126812 GCGACGCTCGACTGAACT 60.127 61.111 13.73 0.00 43.74 3.01
2158 3152 1.729838 GCGACGCTCGACTGAACTT 60.730 57.895 13.73 0.00 43.74 2.66
2159 3153 1.935065 GCGACGCTCGACTGAACTTG 61.935 60.000 13.73 0.00 43.74 3.16
2161 3155 1.053811 GACGCTCGACTGAACTTGTC 58.946 55.000 0.00 0.00 0.00 3.18
2162 3156 0.318784 ACGCTCGACTGAACTTGTCC 60.319 55.000 0.00 0.00 0.00 4.02
2169 3489 5.462530 TCGACTGAACTTGTCCTAATTGA 57.537 39.130 0.00 0.00 0.00 2.57
2200 3520 9.546909 CAATATATAAATTGTGGAGATGCGAAC 57.453 33.333 0.00 0.00 33.11 3.95
2205 3525 2.941453 TGTGGAGATGCGAACTACTC 57.059 50.000 0.00 0.00 0.00 2.59
2206 3526 1.476891 TGTGGAGATGCGAACTACTCC 59.523 52.381 0.00 0.00 46.16 3.85
2208 3528 2.211353 GGAGATGCGAACTACTCCAC 57.789 55.000 0.00 0.00 45.53 4.02
2213 3535 5.509840 GGAGATGCGAACTACTCCACAATAT 60.510 44.000 0.00 0.00 45.53 1.28
2215 3537 4.729227 TGCGAACTACTCCACAATATCA 57.271 40.909 0.00 0.00 0.00 2.15
2269 3662 5.500234 AGCACTTTTAGTCTGATGCCATTA 58.500 37.500 0.00 0.00 33.50 1.90
2294 3691 6.780706 TTTCCGTAAGAGTGATCTTTGTTC 57.219 37.500 0.00 0.00 43.02 3.18
2328 3725 9.529325 TTCACTTTGTCTGAATATAATCTACGG 57.471 33.333 0.00 0.00 0.00 4.02
2414 3819 0.032952 GCCATATGCCAATGCCAGTG 59.967 55.000 0.00 0.00 36.33 3.66
2443 3848 4.806640 CAATGTTTTGGGCCTTAGTCAT 57.193 40.909 4.53 0.00 0.00 3.06
2444 3849 4.497300 CAATGTTTTGGGCCTTAGTCATG 58.503 43.478 4.53 0.00 0.00 3.07
2447 3852 3.245586 TGTTTTGGGCCTTAGTCATGGAT 60.246 43.478 4.53 0.00 0.00 3.41
2453 3858 3.244249 GGGCCTTAGTCATGGATAGTGAC 60.244 52.174 0.84 0.00 44.85 3.67
2504 3909 8.414003 TCAACTTCATGAGTGATATGGTACTAC 58.586 37.037 0.00 0.00 39.00 2.73
2522 3927 8.644216 TGGTACTACATTTCTAAAACACAGAGA 58.356 33.333 0.00 0.00 0.00 3.10
2523 3928 9.485206 GGTACTACATTTCTAAAACACAGAGAA 57.515 33.333 0.00 0.00 0.00 2.87
2525 3930 8.608844 ACTACATTTCTAAAACACAGAGAAGG 57.391 34.615 0.00 0.00 31.16 3.46
2526 3931 8.429641 ACTACATTTCTAAAACACAGAGAAGGA 58.570 33.333 0.00 0.00 31.16 3.36
2527 3932 7.497925 ACATTTCTAAAACACAGAGAAGGAC 57.502 36.000 0.00 0.00 31.16 3.85
2528 3933 6.486993 ACATTTCTAAAACACAGAGAAGGACC 59.513 38.462 0.00 0.00 31.16 4.46
2545 3950 0.036388 ACCGATTCTGATGTGGCGTT 60.036 50.000 0.00 0.00 0.00 4.84
2547 3952 2.158957 ACCGATTCTGATGTGGCGTTAT 60.159 45.455 0.00 0.00 0.00 1.89
2577 3982 9.981460 AATTTCAGTTTAGTAGGATTCTGGATT 57.019 29.630 0.00 0.00 0.00 3.01
2584 3989 9.232473 GTTTAGTAGGATTCTGGATTGAGTTTT 57.768 33.333 0.00 0.00 0.00 2.43
2616 4138 9.699410 ATAGATCATGGGAATCAACAAAGTTTA 57.301 29.630 0.00 0.00 0.00 2.01
2624 4147 6.695713 GGGAATCAACAAAGTTTAGTGTGTTC 59.304 38.462 0.00 0.50 31.98 3.18
2634 4157 0.109723 TAGTGTGTTCCCCAGTTGGC 59.890 55.000 0.00 0.00 0.00 4.52
2786 5389 7.041372 TGTTGGAGTAAGTTGCTATTCTTCAAC 60.041 37.037 0.00 0.00 41.97 3.18
2793 5396 3.247006 TGCTATTCTTCAACGGACCTC 57.753 47.619 0.00 0.00 0.00 3.85
2844 5448 4.350245 TCCACGGAGAGGAAGAGAATTTA 58.650 43.478 0.00 0.00 46.15 1.40
2943 5547 1.151668 GGATGCACATAGACGATGCC 58.848 55.000 0.00 0.00 39.39 4.40
2952 5556 2.554806 TAGACGATGCCAACTACACG 57.445 50.000 0.00 0.00 0.00 4.49
3145 5749 1.812571 GGTTAACCGACGACTACCTCA 59.187 52.381 9.34 0.00 0.00 3.86
3151 5755 1.063951 CGACGACTACCTCAACGTGC 61.064 60.000 0.00 0.00 39.04 5.34
3154 5758 1.669440 GACTACCTCAACGTGCCCA 59.331 57.895 0.00 0.00 0.00 5.36
3156 5760 0.034896 ACTACCTCAACGTGCCCAAG 59.965 55.000 0.00 0.00 0.00 3.61
3160 5764 2.280524 TCAACGTGCCCAAGGACG 60.281 61.111 5.55 5.55 41.41 4.79
3201 5805 1.816863 GATATCGAGAAGCCCCCGCA 61.817 60.000 0.00 0.00 37.52 5.69
3273 5877 1.299089 GGCACCGAACACTGCAAAC 60.299 57.895 0.00 0.00 34.90 2.93
3279 5883 0.235665 CGAACACTGCAAACGCTCAT 59.764 50.000 0.00 0.00 0.00 2.90
3300 5904 1.003839 GGCGGCATCGATTATGGGA 60.004 57.895 3.07 0.00 39.00 4.37
3381 5985 3.307480 CGTTCTTCTCCCAGGGTACATTT 60.307 47.826 5.01 0.00 0.00 2.32
3453 6057 2.231478 GTGGAAACCGTCAGATCTGAGA 59.769 50.000 25.76 2.43 40.75 3.27
3482 6086 0.602638 TACGTGTGGCTGCCTTTGAG 60.603 55.000 21.03 9.87 0.00 3.02
3580 6184 0.605319 CAAAGTGTGGCGCCTTCCTA 60.605 55.000 29.70 2.88 0.00 2.94
3583 6187 2.046314 TGTGGCGCCTTCCTAAGC 60.046 61.111 29.70 7.82 0.00 3.09
3596 6200 2.968675 TCCTAAGCAAAGTTACCGAGC 58.031 47.619 0.00 0.00 0.00 5.03
3607 6211 0.171903 TTACCGAGCGACTTAGCCAC 59.828 55.000 0.00 0.00 38.01 5.01
3609 6213 2.579787 CGAGCGACTTAGCCACGG 60.580 66.667 0.00 0.00 38.01 4.94
3642 6246 3.795826 GCTCTCCATTGCAGATCAAATGC 60.796 47.826 9.23 4.76 44.11 3.56
3644 6248 1.202325 TCCATTGCAGATCAAATGCGC 60.202 47.619 0.00 0.00 46.87 6.09
3645 6249 1.202371 CCATTGCAGATCAAATGCGCT 60.202 47.619 9.73 0.00 46.87 5.92
3646 6250 2.033675 CCATTGCAGATCAAATGCGCTA 59.966 45.455 9.73 0.00 46.87 4.26
3653 6257 6.165577 TGCAGATCAAATGCGCTATAAGATA 58.834 36.000 9.73 0.00 46.87 1.98
3724 6328 5.248870 AGGAACTGTACTTTGCTGTTTTG 57.751 39.130 0.00 0.00 37.18 2.44
3730 6346 5.861787 ACTGTACTTTGCTGTTTTGAACAAC 59.138 36.000 0.00 0.00 41.61 3.32
3732 6348 3.249917 ACTTTGCTGTTTTGAACAACCG 58.750 40.909 0.00 0.00 41.61 4.44
3736 6352 2.229062 TGCTGTTTTGAACAACCGACAA 59.771 40.909 0.00 0.00 41.61 3.18
3741 6357 5.047847 TGTTTTGAACAACCGACAAACAAA 58.952 33.333 0.00 0.00 38.72 2.83
3742 6358 5.696724 TGTTTTGAACAACCGACAAACAAAT 59.303 32.000 0.00 0.00 38.72 2.32
3743 6359 5.769967 TTTGAACAACCGACAAACAAATG 57.230 34.783 0.00 0.00 0.00 2.32
3744 6360 3.775202 TGAACAACCGACAAACAAATGG 58.225 40.909 0.00 0.00 0.00 3.16
3745 6361 2.880963 ACAACCGACAAACAAATGGG 57.119 45.000 0.00 0.00 0.00 4.00
3757 6373 2.154462 ACAAATGGGATATAGCAGCGC 58.846 47.619 0.00 0.00 0.00 5.92
3775 6391 3.057736 AGCGCGTACTGAACCGATTATAT 60.058 43.478 8.43 0.00 0.00 0.86
3776 6392 4.154737 AGCGCGTACTGAACCGATTATATA 59.845 41.667 8.43 0.00 0.00 0.86
3838 6454 5.880901 ACTGAACCAGATTACACAAGGAAT 58.119 37.500 0.45 0.00 35.18 3.01
3840 6456 6.879458 ACTGAACCAGATTACACAAGGAATAC 59.121 38.462 0.45 0.00 35.18 1.89
3845 6461 7.050377 ACCAGATTACACAAGGAATACATGAG 58.950 38.462 0.00 0.00 0.00 2.90
3910 6526 7.546778 TGTAGCATAACATTGAAATTCGCTA 57.453 32.000 0.00 0.00 0.00 4.26
3914 6530 5.172053 GCATAACATTGAAATTCGCTAGCAC 59.828 40.000 16.45 0.00 0.00 4.40
3915 6531 3.389687 ACATTGAAATTCGCTAGCACG 57.610 42.857 16.45 0.00 0.00 5.34
3916 6532 2.742053 ACATTGAAATTCGCTAGCACGT 59.258 40.909 16.45 0.00 0.00 4.49
3917 6533 3.181520 ACATTGAAATTCGCTAGCACGTC 60.182 43.478 16.45 4.84 0.00 4.34
3918 6534 2.363788 TGAAATTCGCTAGCACGTCT 57.636 45.000 16.45 0.00 0.00 4.18
3919 6535 2.259618 TGAAATTCGCTAGCACGTCTC 58.740 47.619 16.45 5.89 0.00 3.36
3920 6536 2.094700 TGAAATTCGCTAGCACGTCTCT 60.095 45.455 16.45 0.00 0.00 3.10
3921 6537 3.128068 TGAAATTCGCTAGCACGTCTCTA 59.872 43.478 16.45 0.00 0.00 2.43
3922 6538 3.992260 AATTCGCTAGCACGTCTCTAT 57.008 42.857 16.45 0.00 0.00 1.98
3923 6539 3.546002 ATTCGCTAGCACGTCTCTATC 57.454 47.619 16.45 0.00 0.00 2.08
3924 6540 2.242047 TCGCTAGCACGTCTCTATCT 57.758 50.000 16.45 0.00 0.00 1.98
3925 6541 2.136728 TCGCTAGCACGTCTCTATCTC 58.863 52.381 16.45 0.00 0.00 2.75
3926 6542 2.139917 CGCTAGCACGTCTCTATCTCT 58.860 52.381 16.45 0.00 0.00 3.10
3927 6543 3.005578 TCGCTAGCACGTCTCTATCTCTA 59.994 47.826 16.45 0.00 0.00 2.43
3928 6544 3.122278 CGCTAGCACGTCTCTATCTCTAC 59.878 52.174 16.45 0.00 0.00 2.59
3929 6545 3.434299 GCTAGCACGTCTCTATCTCTACC 59.566 52.174 10.63 0.00 0.00 3.18
3930 6546 3.849563 AGCACGTCTCTATCTCTACCT 57.150 47.619 0.00 0.00 0.00 3.08
3931 6547 4.959560 AGCACGTCTCTATCTCTACCTA 57.040 45.455 0.00 0.00 0.00 3.08
4094 6712 4.520111 CACATGGACAAATGAAGAAGGTGA 59.480 41.667 0.00 0.00 0.00 4.02
4190 6808 3.500448 TTCTGTGAATTACCACTGCCA 57.500 42.857 0.00 0.00 37.89 4.92
4616 7239 5.888161 CCCAAACATGCTTCCTATTAACTCT 59.112 40.000 0.00 0.00 0.00 3.24
4655 7278 7.985184 TGTAATGACACAGTATTTGTCCTATCC 59.015 37.037 0.25 0.00 42.40 2.59
4660 7285 7.068962 TGACACAGTATTTGTCCTATCCGAATA 59.931 37.037 0.25 0.00 42.40 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.203252 CCATGTCCAGGCCATCGG 60.203 66.667 5.01 1.71 0.00 4.18
8 9 4.838152 CCGACGGCCATGTCCAGG 62.838 72.222 2.24 0.00 35.40 4.45
32 33 1.897615 CCCCGTCGGCCTAGTCTAG 60.898 68.421 5.50 0.00 0.00 2.43
33 34 2.194056 CCCCGTCGGCCTAGTCTA 59.806 66.667 5.50 0.00 0.00 2.59
34 35 4.835891 CCCCCGTCGGCCTAGTCT 62.836 72.222 5.50 0.00 0.00 3.24
52 53 1.865865 GGCCATATATATGCCGACGG 58.134 55.000 16.08 10.29 32.40 4.79
53 54 1.202371 ACGGCCATATATATGCCGACG 60.202 52.381 37.31 29.66 46.45 5.12
54 55 2.470821 GACGGCCATATATATGCCGAC 58.529 52.381 37.31 32.07 46.45 4.79
55 56 1.066454 CGACGGCCATATATATGCCGA 59.934 52.381 37.31 4.68 46.45 5.54
57 58 1.865865 CCGACGGCCATATATATGCC 58.134 55.000 16.08 17.65 32.40 4.40
58 59 1.217882 GCCGACGGCCATATATATGC 58.782 55.000 28.74 11.56 44.06 3.14
80 81 4.157120 CTACCGGAACAGGGCCCG 62.157 72.222 18.44 14.39 44.94 6.13
81 82 3.007323 ACTACCGGAACAGGGCCC 61.007 66.667 16.46 16.46 35.02 5.80
82 83 1.833787 TTCACTACCGGAACAGGGCC 61.834 60.000 9.46 0.00 35.02 5.80
83 84 0.252197 ATTCACTACCGGAACAGGGC 59.748 55.000 9.46 0.00 35.02 5.19
84 85 1.553248 TCATTCACTACCGGAACAGGG 59.447 52.381 9.46 2.97 35.02 4.45
85 86 3.000727 GTTCATTCACTACCGGAACAGG 58.999 50.000 9.46 0.00 38.14 4.00
86 87 2.666508 CGTTCATTCACTACCGGAACAG 59.333 50.000 9.46 4.49 38.14 3.16
87 88 2.610976 CCGTTCATTCACTACCGGAACA 60.611 50.000 9.46 0.00 38.14 3.18
88 89 1.997606 CCGTTCATTCACTACCGGAAC 59.002 52.381 9.46 0.00 37.66 3.62
89 90 1.619827 ACCGTTCATTCACTACCGGAA 59.380 47.619 9.46 0.00 38.75 4.30
90 91 1.259609 ACCGTTCATTCACTACCGGA 58.740 50.000 9.46 0.00 38.75 5.14
91 92 2.088950 AACCGTTCATTCACTACCGG 57.911 50.000 0.00 0.00 41.09 5.28
92 93 4.240096 ACTAAACCGTTCATTCACTACCG 58.760 43.478 0.00 0.00 0.00 4.02
93 94 5.106830 CCAACTAAACCGTTCATTCACTACC 60.107 44.000 0.00 0.00 0.00 3.18
94 95 5.467735 ACCAACTAAACCGTTCATTCACTAC 59.532 40.000 0.00 0.00 0.00 2.73
95 96 5.613329 ACCAACTAAACCGTTCATTCACTA 58.387 37.500 0.00 0.00 0.00 2.74
96 97 4.457466 ACCAACTAAACCGTTCATTCACT 58.543 39.130 0.00 0.00 0.00 3.41
97 98 4.823790 ACCAACTAAACCGTTCATTCAC 57.176 40.909 0.00 0.00 0.00 3.18
98 99 6.939132 TTTACCAACTAAACCGTTCATTCA 57.061 33.333 0.00 0.00 0.00 2.57
99 100 8.806177 AATTTTACCAACTAAACCGTTCATTC 57.194 30.769 0.00 0.00 0.00 2.67
100 101 9.251792 GAAATTTTACCAACTAAACCGTTCATT 57.748 29.630 0.00 0.00 0.00 2.57
101 102 8.635328 AGAAATTTTACCAACTAAACCGTTCAT 58.365 29.630 0.00 0.00 0.00 2.57
102 103 7.998580 AGAAATTTTACCAACTAAACCGTTCA 58.001 30.769 0.00 0.00 0.00 3.18
103 104 8.130469 TGAGAAATTTTACCAACTAAACCGTTC 58.870 33.333 0.00 0.00 0.00 3.95
104 105 7.916977 GTGAGAAATTTTACCAACTAAACCGTT 59.083 33.333 0.00 0.00 0.00 4.44
105 106 7.420002 GTGAGAAATTTTACCAACTAAACCGT 58.580 34.615 0.00 0.00 0.00 4.83
106 107 6.859508 GGTGAGAAATTTTACCAACTAAACCG 59.140 38.462 12.60 0.00 33.42 4.44
107 108 7.948357 AGGTGAGAAATTTTACCAACTAAACC 58.052 34.615 17.24 9.32 35.66 3.27
108 109 9.888878 GTAGGTGAGAAATTTTACCAACTAAAC 57.111 33.333 17.24 6.73 35.66 2.01
109 110 8.776470 CGTAGGTGAGAAATTTTACCAACTAAA 58.224 33.333 17.24 0.05 35.66 1.85
110 111 8.314143 CGTAGGTGAGAAATTTTACCAACTAA 57.686 34.615 17.24 2.87 35.66 2.24
111 112 7.894376 CGTAGGTGAGAAATTTTACCAACTA 57.106 36.000 17.24 12.84 35.66 2.24
112 113 6.796705 CGTAGGTGAGAAATTTTACCAACT 57.203 37.500 17.24 13.58 35.66 3.16
131 132 1.655329 GAGACCAGGCGATCCGTAG 59.345 63.158 0.00 0.00 37.47 3.51
132 133 1.826921 GGAGACCAGGCGATCCGTA 60.827 63.158 0.00 0.00 37.47 4.02
133 134 3.148279 GGAGACCAGGCGATCCGT 61.148 66.667 0.00 0.00 37.47 4.69
351 353 0.250081 GTCATCGGAGATCTTGGGGC 60.250 60.000 0.00 0.00 45.12 5.80
415 417 9.601217 CAACAGCAAAGGAATACTAGTACTAAT 57.399 33.333 4.31 0.00 0.00 1.73
416 418 8.809066 TCAACAGCAAAGGAATACTAGTACTAA 58.191 33.333 4.31 0.00 0.00 2.24
417 419 8.357290 TCAACAGCAAAGGAATACTAGTACTA 57.643 34.615 4.31 1.89 0.00 1.82
419 421 7.321153 TCTCAACAGCAAAGGAATACTAGTAC 58.679 38.462 4.31 0.00 0.00 2.73
420 422 7.476540 TCTCAACAGCAAAGGAATACTAGTA 57.523 36.000 4.77 4.77 0.00 1.82
423 425 7.882791 TCAATTCTCAACAGCAAAGGAATACTA 59.117 33.333 0.00 0.00 0.00 1.82
424 426 6.716628 TCAATTCTCAACAGCAAAGGAATACT 59.283 34.615 0.00 0.00 0.00 2.12
425 427 6.913170 TCAATTCTCAACAGCAAAGGAATAC 58.087 36.000 0.00 0.00 0.00 1.89
426 428 6.942005 TCTCAATTCTCAACAGCAAAGGAATA 59.058 34.615 0.00 0.00 0.00 1.75
427 429 5.771666 TCTCAATTCTCAACAGCAAAGGAAT 59.228 36.000 0.00 0.00 0.00 3.01
428 430 5.132502 TCTCAATTCTCAACAGCAAAGGAA 58.867 37.500 0.00 0.00 0.00 3.36
448 471 9.026074 GCAAAAGAGTACTACTACATCAATCTC 57.974 37.037 0.00 0.00 0.00 2.75
449 472 8.754080 AGCAAAAGAGTACTACTACATCAATCT 58.246 33.333 0.00 0.00 0.00 2.40
450 473 8.812329 CAGCAAAAGAGTACTACTACATCAATC 58.188 37.037 0.00 0.00 0.00 2.67
451 474 8.314751 ACAGCAAAAGAGTACTACTACATCAAT 58.685 33.333 0.00 0.00 0.00 2.57
453 476 7.228314 ACAGCAAAAGAGTACTACTACATCA 57.772 36.000 0.00 0.00 0.00 3.07
454 477 7.813148 TCAACAGCAAAAGAGTACTACTACATC 59.187 37.037 0.00 0.00 0.00 3.06
455 478 7.667557 TCAACAGCAAAAGAGTACTACTACAT 58.332 34.615 0.00 0.00 0.00 2.29
456 479 7.046292 TCAACAGCAAAAGAGTACTACTACA 57.954 36.000 0.00 0.00 0.00 2.74
457 480 6.089685 GCTCAACAGCAAAAGAGTACTACTAC 59.910 42.308 0.00 0.00 46.06 2.73
458 481 6.157211 GCTCAACAGCAAAAGAGTACTACTA 58.843 40.000 0.00 0.00 46.06 1.82
518 541 1.491274 TTGCCATCCACAGCTCTGGA 61.491 55.000 13.57 13.57 44.72 3.86
521 544 1.035932 GCATTGCCATCCACAGCTCT 61.036 55.000 0.00 0.00 0.00 4.09
535 558 0.376852 CGTATCGTGGGTTGGCATTG 59.623 55.000 0.00 0.00 0.00 2.82
536 559 0.746563 CCGTATCGTGGGTTGGCATT 60.747 55.000 0.00 0.00 0.00 3.56
555 585 3.909086 AAGCCGACTCTGCCTTGCC 62.909 63.158 0.00 0.00 0.00 4.52
556 586 1.968540 AAAGCCGACTCTGCCTTGC 60.969 57.895 0.00 0.00 0.00 4.01
557 587 1.580845 CCAAAGCCGACTCTGCCTTG 61.581 60.000 0.00 0.00 31.47 3.61
558 588 1.302832 CCAAAGCCGACTCTGCCTT 60.303 57.895 0.00 0.00 0.00 4.35
593 624 0.251341 GGTCAGATGGGTTGGTGCTT 60.251 55.000 0.00 0.00 0.00 3.91
606 637 4.927267 AATACAGGTTTCATGGGTCAGA 57.073 40.909 0.00 0.00 0.00 3.27
607 638 5.391950 CGAAAATACAGGTTTCATGGGTCAG 60.392 44.000 0.00 0.00 35.17 3.51
618 649 3.751518 ACTGAAGCCGAAAATACAGGTT 58.248 40.909 0.00 0.00 0.00 3.50
620 651 4.455877 AGAAACTGAAGCCGAAAATACAGG 59.544 41.667 0.00 0.00 0.00 4.00
621 652 5.613358 AGAAACTGAAGCCGAAAATACAG 57.387 39.130 0.00 0.00 0.00 2.74
622 653 4.151689 CGAGAAACTGAAGCCGAAAATACA 59.848 41.667 0.00 0.00 0.00 2.29
637 668 2.657237 CCGGCTGGTCGAGAAACT 59.343 61.111 2.29 0.00 0.00 2.66
639 670 4.388499 GCCCGGCTGGTCGAGAAA 62.388 66.667 11.58 0.00 36.04 2.52
660 691 1.530183 GGGATGAGAATGGGCTGGC 60.530 63.158 0.00 0.00 0.00 4.85
663 694 0.399454 CGATGGGATGAGAATGGGCT 59.601 55.000 0.00 0.00 0.00 5.19
714 745 8.871686 ATTTCGAAAAGCTGTTAAAATCAACT 57.128 26.923 15.66 0.00 0.00 3.16
719 750 9.750125 AGAAGAATTTCGAAAAGCTGTTAAAAT 57.250 25.926 15.66 0.00 38.38 1.82
748 1711 6.200854 GTGGATGATTTCGAAAAGCTGTTTTT 59.799 34.615 15.66 1.70 41.59 1.94
749 1712 5.691754 GTGGATGATTTCGAAAAGCTGTTTT 59.308 36.000 15.66 0.00 38.65 2.43
750 1713 5.221224 TGTGGATGATTTCGAAAAGCTGTTT 60.221 36.000 15.66 0.00 0.00 2.83
759 1722 3.427909 GCATGCTTGTGGATGATTTCGAA 60.428 43.478 11.37 0.00 43.49 3.71
823 1786 8.746530 TCTGTAAACAAATACTCCTACGAGATT 58.253 33.333 0.00 0.00 38.52 2.40
825 1788 7.148120 CCTCTGTAAACAAATACTCCTACGAGA 60.148 40.741 0.00 0.00 38.52 4.04
828 1791 6.040878 CCCTCTGTAAACAAATACTCCTACG 58.959 44.000 0.00 0.00 0.00 3.51
831 1794 5.785940 ACTCCCTCTGTAAACAAATACTCCT 59.214 40.000 0.00 0.00 0.00 3.69
832 1795 6.051179 ACTCCCTCTGTAAACAAATACTCC 57.949 41.667 0.00 0.00 0.00 3.85
833 1796 8.064336 TCTACTCCCTCTGTAAACAAATACTC 57.936 38.462 0.00 0.00 0.00 2.59
841 1804 9.664332 TCGTATATATCTACTCCCTCTGTAAAC 57.336 37.037 0.00 0.00 0.00 2.01
845 1808 7.771361 CACATCGTATATATCTACTCCCTCTGT 59.229 40.741 0.00 0.00 0.00 3.41
846 1809 7.771361 ACACATCGTATATATCTACTCCCTCTG 59.229 40.741 0.00 0.00 0.00 3.35
847 1810 7.771361 CACACATCGTATATATCTACTCCCTCT 59.229 40.741 0.00 0.00 0.00 3.69
848 1811 7.769507 TCACACATCGTATATATCTACTCCCTC 59.230 40.741 0.00 0.00 0.00 4.30
849 1812 7.631007 TCACACATCGTATATATCTACTCCCT 58.369 38.462 0.00 0.00 0.00 4.20
850 1813 7.860918 TCACACATCGTATATATCTACTCCC 57.139 40.000 0.00 0.00 0.00 4.30
851 1814 9.938670 GAATCACACATCGTATATATCTACTCC 57.061 37.037 0.00 0.00 0.00 3.85
852 1815 9.938670 GGAATCACACATCGTATATATCTACTC 57.061 37.037 0.00 0.00 0.00 2.59
853 1816 8.904834 GGGAATCACACATCGTATATATCTACT 58.095 37.037 0.00 0.00 0.00 2.57
854 1817 8.904834 AGGGAATCACACATCGTATATATCTAC 58.095 37.037 0.00 0.00 0.00 2.59
855 1818 8.903820 CAGGGAATCACACATCGTATATATCTA 58.096 37.037 0.00 0.00 0.00 1.98
856 1819 7.615757 TCAGGGAATCACACATCGTATATATCT 59.384 37.037 0.00 0.00 0.00 1.98
857 1820 7.772166 TCAGGGAATCACACATCGTATATATC 58.228 38.462 0.00 0.00 0.00 1.63
858 1821 7.718334 TCAGGGAATCACACATCGTATATAT 57.282 36.000 0.00 0.00 0.00 0.86
859 1822 7.718334 ATCAGGGAATCACACATCGTATATA 57.282 36.000 0.00 0.00 0.00 0.86
862 1825 4.963318 ATCAGGGAATCACACATCGTAT 57.037 40.909 0.00 0.00 0.00 3.06
864 1827 3.634397 AATCAGGGAATCACACATCGT 57.366 42.857 0.00 0.00 0.00 3.73
866 1829 5.902613 TTCAAATCAGGGAATCACACATC 57.097 39.130 0.00 0.00 0.00 3.06
869 1832 5.413499 CCATTTCAAATCAGGGAATCACAC 58.587 41.667 0.00 0.00 0.00 3.82
871 1834 4.436332 GCCATTTCAAATCAGGGAATCAC 58.564 43.478 0.00 0.00 0.00 3.06
872 1835 3.130869 CGCCATTTCAAATCAGGGAATCA 59.869 43.478 0.00 0.00 0.00 2.57
873 1836 3.381272 TCGCCATTTCAAATCAGGGAATC 59.619 43.478 0.00 0.00 0.00 2.52
874 1837 3.131046 GTCGCCATTTCAAATCAGGGAAT 59.869 43.478 0.00 0.00 0.00 3.01
897 1875 3.540314 TTTTGTGCAATGAACAGCCTT 57.460 38.095 0.00 0.00 0.00 4.35
916 1899 9.860393 ATATTAAGGGATGAAGGGAGTAGTATT 57.140 33.333 0.00 0.00 0.00 1.89
919 1902 9.684702 TTTATATTAAGGGATGAAGGGAGTAGT 57.315 33.333 0.00 0.00 0.00 2.73
922 1905 9.813826 CATTTTATATTAAGGGATGAAGGGAGT 57.186 33.333 0.00 0.00 0.00 3.85
923 1906 9.813826 ACATTTTATATTAAGGGATGAAGGGAG 57.186 33.333 0.00 0.00 0.00 4.30
958 1941 8.973835 AAGACGTTTTTGTAGTTCAATTTGAA 57.026 26.923 7.74 7.74 35.84 2.69
975 1958 9.708092 GCCTCTATTCCTTAATATAAGACGTTT 57.292 33.333 0.00 0.00 0.00 3.60
976 1959 8.867097 TGCCTCTATTCCTTAATATAAGACGTT 58.133 33.333 0.00 0.00 0.00 3.99
977 1960 8.418597 TGCCTCTATTCCTTAATATAAGACGT 57.581 34.615 0.00 0.00 0.00 4.34
978 1961 8.524487 ACTGCCTCTATTCCTTAATATAAGACG 58.476 37.037 0.00 0.00 0.00 4.18
986 1969 9.299465 GTACTACTACTGCCTCTATTCCTTAAT 57.701 37.037 0.00 0.00 0.00 1.40
987 1970 8.501070 AGTACTACTACTGCCTCTATTCCTTAA 58.499 37.037 0.00 0.00 31.46 1.85
988 1971 8.043429 AGTACTACTACTGCCTCTATTCCTTA 57.957 38.462 0.00 0.00 31.46 2.69
989 1972 6.913545 AGTACTACTACTGCCTCTATTCCTT 58.086 40.000 0.00 0.00 31.46 3.36
990 1973 6.518516 AGTACTACTACTGCCTCTATTCCT 57.481 41.667 0.00 0.00 31.46 3.36
991 1974 6.654582 GGTAGTACTACTACTGCCTCTATTCC 59.345 46.154 27.71 6.21 46.95 3.01
992 1975 7.671495 GGTAGTACTACTACTGCCTCTATTC 57.329 44.000 27.71 6.69 46.95 1.75
1007 1990 8.685838 AAACAGAATGCAAAAAGGTAGTACTA 57.314 30.769 0.00 0.00 42.53 1.82
1009 1992 8.642908 AAAAACAGAATGCAAAAAGGTAGTAC 57.357 30.769 0.00 0.00 42.53 2.73
1011 1994 7.492344 CAGAAAAACAGAATGCAAAAAGGTAGT 59.508 33.333 0.00 0.00 42.53 2.73
1021 2004 5.710513 ATACTGCAGAAAAACAGAATGCA 57.289 34.783 23.35 0.00 44.10 3.96
1022 2005 5.284660 CGAATACTGCAGAAAAACAGAATGC 59.715 40.000 23.35 0.00 42.53 3.56
1024 2007 6.621596 GCTCGAATACTGCAGAAAAACAGAAT 60.622 38.462 23.35 0.00 37.35 2.40
1026 2009 4.152402 GCTCGAATACTGCAGAAAAACAGA 59.848 41.667 23.35 9.47 37.35 3.41
1027 2010 4.153117 AGCTCGAATACTGCAGAAAAACAG 59.847 41.667 23.35 10.12 39.86 3.16
1028 2011 4.065088 AGCTCGAATACTGCAGAAAAACA 58.935 39.130 23.35 0.00 0.00 2.83
1029 2012 4.152402 TCAGCTCGAATACTGCAGAAAAAC 59.848 41.667 23.35 6.66 33.80 2.43
1030 2013 4.314961 TCAGCTCGAATACTGCAGAAAAA 58.685 39.130 23.35 2.81 33.80 1.94
1035 2018 1.929836 GGTTCAGCTCGAATACTGCAG 59.070 52.381 13.48 13.48 35.63 4.41
1036 2019 1.550524 AGGTTCAGCTCGAATACTGCA 59.449 47.619 5.18 0.00 35.63 4.41
1078 2064 6.565435 CGCCAATGATCTGCTCAAAGTAATAG 60.565 42.308 0.00 0.00 37.44 1.73
1084 2070 1.533338 GCGCCAATGATCTGCTCAAAG 60.533 52.381 0.00 0.00 37.44 2.77
1087 2073 0.464916 ATGCGCCAATGATCTGCTCA 60.465 50.000 4.18 0.00 38.53 4.26
1147 2134 3.264897 CGCCGCATACCAGCAGAC 61.265 66.667 0.00 0.00 0.00 3.51
1150 2137 4.529219 CCTCGCCGCATACCAGCA 62.529 66.667 0.00 0.00 0.00 4.41
1201 2188 0.955428 ACAAGCACGATCAATGCCGT 60.955 50.000 13.87 9.66 44.53 5.68
1210 2197 6.407202 AGAGGTAGAAAATAACAAGCACGAT 58.593 36.000 0.00 0.00 0.00 3.73
1213 2200 7.435068 TGAAGAGGTAGAAAATAACAAGCAC 57.565 36.000 0.00 0.00 0.00 4.40
1219 2206 8.561738 TGGTTGATGAAGAGGTAGAAAATAAC 57.438 34.615 0.00 0.00 0.00 1.89
1228 2215 5.366768 CCTCCTTATGGTTGATGAAGAGGTA 59.633 44.000 0.00 0.00 34.23 3.08
1241 2228 4.536090 TCACAATCTGTTCCTCCTTATGGT 59.464 41.667 0.00 0.00 34.23 3.55
1342 2329 4.748144 CCTGTGCTCCCCCTTGCC 62.748 72.222 0.00 0.00 0.00 4.52
1368 2355 0.105964 CCAAGAACTCGTCCACCACA 59.894 55.000 0.00 0.00 0.00 4.17
1423 2410 1.079073 CCATGGCCACCTTCCCTTT 59.921 57.895 8.16 0.00 0.00 3.11
1449 2436 2.430465 CTCCTGTCATTCCCACTGTTG 58.570 52.381 0.00 0.00 0.00 3.33
1452 2439 0.987294 ACCTCCTGTCATTCCCACTG 59.013 55.000 0.00 0.00 0.00 3.66
1453 2440 2.188817 GTACCTCCTGTCATTCCCACT 58.811 52.381 0.00 0.00 0.00 4.00
1536 2523 5.185454 GTTTCCTCATCATACATCACACCA 58.815 41.667 0.00 0.00 0.00 4.17
1543 2530 5.192522 AGGTCTTGGTTTCCTCATCATACAT 59.807 40.000 0.00 0.00 0.00 2.29
1561 2548 6.023603 TCTCTCCATACCAAAAGTAGGTCTT 58.976 40.000 0.00 0.00 40.54 3.01
1569 2556 7.446625 CCATCCTTATTCTCTCCATACCAAAAG 59.553 40.741 0.00 0.00 0.00 2.27
1572 2559 5.221925 GCCATCCTTATTCTCTCCATACCAA 60.222 44.000 0.00 0.00 0.00 3.67
1641 2628 6.183359 CGAATGTTGAAAGCATCAGAACAATG 60.183 38.462 0.00 0.00 39.77 2.82
1644 2631 4.786507 CGAATGTTGAAAGCATCAGAACA 58.213 39.130 0.00 0.00 39.77 3.18
1647 2634 2.813172 TGCGAATGTTGAAAGCATCAGA 59.187 40.909 0.00 0.00 39.77 3.27
1661 2648 2.918600 CAACACACCAATGATGCGAATG 59.081 45.455 0.00 0.00 0.00 2.67
1662 2649 2.094597 CCAACACACCAATGATGCGAAT 60.095 45.455 0.00 0.00 0.00 3.34
1665 2652 0.880441 TCCAACACACCAATGATGCG 59.120 50.000 0.00 0.00 0.00 4.73
1694 2681 3.689161 TGTGTAATTACAGTGCCTGATGC 59.311 43.478 18.56 3.87 36.78 3.91
1698 2685 5.914635 CACTTTTGTGTAATTACAGTGCCTG 59.085 40.000 18.56 9.90 44.94 4.85
1699 2686 6.072112 CACTTTTGTGTAATTACAGTGCCT 57.928 37.500 18.56 0.00 44.94 4.75
1719 2706 2.306805 TCTGACAAGGGAATGATGCACT 59.693 45.455 0.00 0.00 0.00 4.40
1720 2707 2.715046 TCTGACAAGGGAATGATGCAC 58.285 47.619 0.00 0.00 0.00 4.57
1721 2708 3.438216 TTCTGACAAGGGAATGATGCA 57.562 42.857 0.00 0.00 0.00 3.96
1722 2709 6.455360 TTTATTCTGACAAGGGAATGATGC 57.545 37.500 0.00 0.00 34.52 3.91
1723 2710 8.910944 AGATTTTATTCTGACAAGGGAATGATG 58.089 33.333 0.00 0.00 34.52 3.07
1724 2711 8.910944 CAGATTTTATTCTGACAAGGGAATGAT 58.089 33.333 0.00 0.00 44.88 2.45
1725 2712 7.890127 ACAGATTTTATTCTGACAAGGGAATGA 59.110 33.333 8.36 0.00 44.88 2.57
1726 2713 7.972277 CACAGATTTTATTCTGACAAGGGAATG 59.028 37.037 8.36 0.00 44.88 2.67
1727 2714 7.671398 ACACAGATTTTATTCTGACAAGGGAAT 59.329 33.333 8.36 0.00 44.88 3.01
1728 2715 7.004086 ACACAGATTTTATTCTGACAAGGGAA 58.996 34.615 8.36 0.00 44.88 3.97
1729 2716 6.542821 ACACAGATTTTATTCTGACAAGGGA 58.457 36.000 8.36 0.00 44.88 4.20
1730 2717 6.824305 ACACAGATTTTATTCTGACAAGGG 57.176 37.500 8.36 0.00 44.88 3.95
1731 2718 7.874940 TCAACACAGATTTTATTCTGACAAGG 58.125 34.615 8.36 0.00 44.88 3.61
1732 2719 9.390795 CTTCAACACAGATTTTATTCTGACAAG 57.609 33.333 8.36 0.43 44.88 3.16
1733 2720 9.119418 TCTTCAACACAGATTTTATTCTGACAA 57.881 29.630 8.36 0.00 44.88 3.18
1734 2721 8.675705 TCTTCAACACAGATTTTATTCTGACA 57.324 30.769 8.36 0.00 44.88 3.58
1735 2722 9.387123 GTTCTTCAACACAGATTTTATTCTGAC 57.613 33.333 8.36 0.00 44.90 3.51
1736 2723 9.342308 AGTTCTTCAACACAGATTTTATTCTGA 57.658 29.630 8.36 0.00 44.90 3.27
1737 2724 9.956720 AAGTTCTTCAACACAGATTTTATTCTG 57.043 29.630 0.09 0.09 46.94 3.02
1739 2726 9.399403 GGAAGTTCTTCAACACAGATTTTATTC 57.601 33.333 13.44 0.00 34.60 1.75
1740 2727 8.912988 TGGAAGTTCTTCAACACAGATTTTATT 58.087 29.630 13.44 0.00 34.60 1.40
1741 2728 8.463930 TGGAAGTTCTTCAACACAGATTTTAT 57.536 30.769 13.44 0.00 34.60 1.40
1742 2729 7.873719 TGGAAGTTCTTCAACACAGATTTTA 57.126 32.000 13.44 0.00 34.60 1.52
1743 2730 6.773976 TGGAAGTTCTTCAACACAGATTTT 57.226 33.333 13.44 0.00 34.60 1.82
1744 2731 6.152661 TGTTGGAAGTTCTTCAACACAGATTT 59.847 34.615 18.25 0.00 43.65 2.17
1745 2732 5.652014 TGTTGGAAGTTCTTCAACACAGATT 59.348 36.000 18.25 0.00 43.65 2.40
1746 2733 5.192927 TGTTGGAAGTTCTTCAACACAGAT 58.807 37.500 18.25 0.00 43.65 2.90
1747 2734 4.584874 TGTTGGAAGTTCTTCAACACAGA 58.415 39.130 18.25 2.63 43.65 3.41
1748 2735 4.963276 TGTTGGAAGTTCTTCAACACAG 57.037 40.909 18.25 0.00 43.65 3.66
1790 2777 9.918630 ATTCTGACAAAGGAATAATGTTCTTTG 57.081 29.630 11.57 11.57 46.58 2.77
1791 2778 9.918630 CATTCTGACAAAGGAATAATGTTCTTT 57.081 29.630 0.00 0.00 31.86 2.52
1792 2779 9.082313 ACATTCTGACAAAGGAATAATGTTCTT 57.918 29.630 0.00 0.00 33.54 2.52
1793 2780 8.641498 ACATTCTGACAAAGGAATAATGTTCT 57.359 30.769 0.00 0.00 33.54 3.01
1851 2838 7.763985 GGCTAAAAATGAAGGCATAGCTAAAAA 59.236 33.333 0.00 0.00 38.14 1.94
1852 2839 7.093552 TGGCTAAAAATGAAGGCATAGCTAAAA 60.094 33.333 0.00 0.00 42.67 1.52
1853 2840 6.379703 TGGCTAAAAATGAAGGCATAGCTAAA 59.620 34.615 0.00 0.00 42.67 1.85
1856 2843 4.280819 TGGCTAAAAATGAAGGCATAGCT 58.719 39.130 0.00 0.00 42.67 3.32
1857 2844 4.654091 TGGCTAAAAATGAAGGCATAGC 57.346 40.909 0.00 0.00 42.67 2.97
1900 2892 1.817357 TGTGGAAGCAGCTCAATCAG 58.183 50.000 0.00 0.00 0.00 2.90
1905 2897 0.183492 AGGTTTGTGGAAGCAGCTCA 59.817 50.000 0.00 0.00 38.21 4.26
1915 2907 2.472816 GTTCATGTGCAAGGTTTGTGG 58.527 47.619 0.00 0.00 0.00 4.17
1916 2908 2.101249 AGGTTCATGTGCAAGGTTTGTG 59.899 45.455 0.00 0.00 0.00 3.33
1921 2913 3.832527 AGTTAAGGTTCATGTGCAAGGT 58.167 40.909 0.00 0.00 0.00 3.50
1931 2923 5.790593 CCTACTTGCAGTAGTTAAGGTTCA 58.209 41.667 16.87 0.00 45.12 3.18
1934 2926 3.838903 AGCCTACTTGCAGTAGTTAAGGT 59.161 43.478 16.87 8.37 45.12 3.50
1938 2930 5.677319 ATGAAGCCTACTTGCAGTAGTTA 57.323 39.130 16.87 2.85 45.12 2.24
1940 2932 4.712337 ACTATGAAGCCTACTTGCAGTAGT 59.288 41.667 16.87 8.87 45.12 2.73
1941 2933 5.269505 ACTATGAAGCCTACTTGCAGTAG 57.730 43.478 13.35 13.35 45.93 2.57
1942 2934 6.978674 ATACTATGAAGCCTACTTGCAGTA 57.021 37.500 0.00 0.00 35.82 2.74
1943 2935 5.878406 ATACTATGAAGCCTACTTGCAGT 57.122 39.130 0.00 0.00 35.82 4.40
2022 3014 7.053498 TCAATACATTATGAAGCCTACTTGCA 58.947 34.615 0.00 0.00 35.82 4.08
2092 3086 6.487960 CAAGAGGTAGACAACTATAGTGACG 58.512 44.000 6.06 0.96 0.00 4.35
2108 3102 4.009675 CCTTAATGTTGCAGCAAGAGGTA 58.990 43.478 8.49 1.15 0.00 3.08
2111 3105 4.771590 TTCCTTAATGTTGCAGCAAGAG 57.228 40.909 8.49 5.83 0.00 2.85
2123 3117 3.362014 CGTCGCGACATGATTCCTTAATG 60.362 47.826 35.71 12.76 0.00 1.90
2142 3136 1.053811 GACAAGTTCAGTCGAGCGTC 58.946 55.000 0.00 0.00 0.00 5.19
2144 3138 0.039074 AGGACAAGTTCAGTCGAGCG 60.039 55.000 0.00 0.00 36.87 5.03
2185 3505 2.094182 GGAGTAGTTCGCATCTCCACAA 60.094 50.000 5.35 0.00 43.95 3.33
2190 3510 2.941453 TGTGGAGTAGTTCGCATCTC 57.059 50.000 0.00 0.00 0.00 2.75
2196 3516 5.625721 GTCGATGATATTGTGGAGTAGTTCG 59.374 44.000 0.00 0.00 0.00 3.95
2200 3520 9.645059 AAATATGTCGATGATATTGTGGAGTAG 57.355 33.333 11.40 0.00 0.00 2.57
2247 3640 4.708726 AATGGCATCAGACTAAAAGTGC 57.291 40.909 0.00 0.00 0.00 4.40
2269 3662 7.661847 AGAACAAAGATCACTCTTACGGAAAAT 59.338 33.333 0.00 0.00 40.93 1.82
2304 3701 8.755941 CACCGTAGATTATATTCAGACAAAGTG 58.244 37.037 0.00 0.00 0.00 3.16
2318 3715 7.788026 TGAAATAACTGGACACCGTAGATTAT 58.212 34.615 0.00 0.00 0.00 1.28
2321 3718 5.187186 ACTGAAATAACTGGACACCGTAGAT 59.813 40.000 0.00 0.00 0.00 1.98
2323 3720 4.817517 ACTGAAATAACTGGACACCGTAG 58.182 43.478 0.00 0.00 0.00 3.51
2325 3722 3.764237 ACTGAAATAACTGGACACCGT 57.236 42.857 0.00 0.00 0.00 4.83
2326 3723 4.062293 TGAACTGAAATAACTGGACACCG 58.938 43.478 0.00 0.00 0.00 4.94
2327 3724 6.016276 ACATTGAACTGAAATAACTGGACACC 60.016 38.462 0.00 0.00 0.00 4.16
2328 3725 6.970484 ACATTGAACTGAAATAACTGGACAC 58.030 36.000 0.00 0.00 0.00 3.67
2434 3839 5.598416 TGTGTCACTATCCATGACTAAGG 57.402 43.478 4.27 0.00 45.58 2.69
2482 3887 9.770097 AAATGTAGTACCATATCACTCATGAAG 57.230 33.333 0.00 0.00 38.69 3.02
2504 3909 6.347725 CGGTCCTTCTCTGTGTTTTAGAAATG 60.348 42.308 0.00 0.00 0.00 2.32
2517 3922 3.131933 ACATCAGAATCGGTCCTTCTCTG 59.868 47.826 5.13 5.13 35.82 3.35
2522 3927 1.407437 GCCACATCAGAATCGGTCCTT 60.407 52.381 0.00 0.00 0.00 3.36
2523 3928 0.179000 GCCACATCAGAATCGGTCCT 59.821 55.000 0.00 0.00 0.00 3.85
2524 3929 1.154205 CGCCACATCAGAATCGGTCC 61.154 60.000 0.00 0.00 0.00 4.46
2525 3930 0.460284 ACGCCACATCAGAATCGGTC 60.460 55.000 0.00 0.00 0.00 4.79
2526 3931 0.036388 AACGCCACATCAGAATCGGT 60.036 50.000 0.00 0.00 0.00 4.69
2527 3932 1.934589 TAACGCCACATCAGAATCGG 58.065 50.000 0.00 0.00 0.00 4.18
2528 3933 2.348872 GCATAACGCCACATCAGAATCG 60.349 50.000 0.00 0.00 32.94 3.34
2547 3952 8.514594 CAGAATCCTACTAAACTGAAATTTGCA 58.485 33.333 0.00 0.00 0.00 4.08
2577 3982 7.576403 TCCCATGATCTATCAATGAAAACTCA 58.424 34.615 0.00 0.00 40.69 3.41
2584 3989 7.519927 TGTTGATTCCCATGATCTATCAATGA 58.480 34.615 12.40 0.00 40.69 2.57
2616 4138 1.152756 GCCAACTGGGGAACACACT 60.153 57.895 0.00 0.00 37.04 3.55
2624 4147 0.603439 GTGCATTTTGCCAACTGGGG 60.603 55.000 0.00 0.00 44.23 4.96
2634 4157 4.943705 AGGTCCACATAGTAGTGCATTTTG 59.056 41.667 0.00 0.00 38.18 2.44
2652 4175 2.790433 TGCAAATGACTTGGTAGGTCC 58.210 47.619 0.00 0.00 35.38 4.46
2653 4176 5.391312 AATTGCAAATGACTTGGTAGGTC 57.609 39.130 1.71 0.00 35.38 3.85
2793 5396 3.754965 TCCTTCATTTGTCCAAGACCAG 58.245 45.455 0.00 0.00 0.00 4.00
2836 5440 4.212214 GTGGAGGTCATGCGATAAATTCTC 59.788 45.833 0.00 0.00 0.00 2.87
2844 5448 2.292267 GATTTGTGGAGGTCATGCGAT 58.708 47.619 0.00 0.00 0.00 4.58
2943 5547 4.032900 CCGATTGAGGATTTCGTGTAGTTG 59.967 45.833 0.00 0.00 0.00 3.16
2952 5556 0.657840 CCACGCCGATTGAGGATTTC 59.342 55.000 0.00 0.00 0.00 2.17
2981 5585 1.630369 TGAATGGTCCTGTGGGAGAAG 59.370 52.381 0.00 0.00 43.12 2.85
3145 5749 2.590575 CACGTCCTTGGGCACGTT 60.591 61.111 4.17 0.00 46.93 3.99
3151 5755 0.609131 ATTCTTGGCACGTCCTTGGG 60.609 55.000 0.00 0.00 35.26 4.12
3154 5758 2.427506 GAGAATTCTTGGCACGTCCTT 58.572 47.619 9.87 0.00 35.26 3.36
3156 5760 0.721718 CGAGAATTCTTGGCACGTCC 59.278 55.000 14.18 0.00 0.00 4.79
3160 5764 0.095417 GCGACGAGAATTCTTGGCAC 59.905 55.000 25.33 14.33 34.97 5.01
3164 5768 1.336877 TCGTGCGACGAGAATTCTTG 58.663 50.000 19.46 19.46 46.73 3.02
3183 5787 1.837051 TGCGGGGGCTTCTCGATAT 60.837 57.895 4.18 0.00 0.00 1.63
3201 5805 1.668151 GCCGCCGAACTTGAAGAGT 60.668 57.895 0.00 0.00 41.47 3.24
3286 5890 2.154462 CCAAGGTCCCATAATCGATGC 58.846 52.381 0.00 0.00 33.79 3.91
3294 5898 0.327191 GGGTCTCCCAAGGTCCCATA 60.327 60.000 0.00 0.00 44.65 2.74
3318 5922 2.075837 CCCTCCGAGGAAAGGGTTT 58.924 57.895 16.69 0.00 46.21 3.27
3330 5934 5.220951 CGATCTGTATATCTCATTCCCTCCG 60.221 48.000 0.00 0.00 0.00 4.63
3399 6003 0.620556 AGATGAACAGACCCGGCAAT 59.379 50.000 0.00 0.00 0.00 3.56
3444 6048 4.062293 CGTACCTCGAATCTCTCAGATCT 58.938 47.826 0.00 0.00 42.86 2.75
3453 6057 0.172803 GCCACACGTACCTCGAATCT 59.827 55.000 0.00 0.00 42.86 2.40
3482 6086 0.690077 ATCGGGAAGTCCACCTACCC 60.690 60.000 0.00 0.00 37.91 3.69
3580 6184 1.145803 GTCGCTCGGTAACTTTGCTT 58.854 50.000 0.00 0.00 0.00 3.91
3583 6187 2.344741 GCTAAGTCGCTCGGTAACTTTG 59.655 50.000 1.27 1.49 35.08 2.77
3596 6200 0.530650 ATGCATCCGTGGCTAAGTCG 60.531 55.000 0.00 0.00 0.00 4.18
3607 6211 1.274447 TGGAGAGCAGATATGCATCCG 59.726 52.381 23.48 0.00 42.34 4.18
3609 6213 3.127203 GCAATGGAGAGCAGATATGCATC 59.873 47.826 15.82 11.68 28.78 3.91
3653 6257 6.156748 ACCTCGTTTCTTTGCCTTTATTTT 57.843 33.333 0.00 0.00 0.00 1.82
3710 6314 4.156190 TCGGTTGTTCAAAACAGCAAAGTA 59.844 37.500 8.57 0.00 43.43 2.24
3724 6328 3.120041 CCCATTTGTTTGTCGGTTGTTC 58.880 45.455 0.00 0.00 0.00 3.18
3730 6346 4.578516 TGCTATATCCCATTTGTTTGTCGG 59.421 41.667 0.00 0.00 0.00 4.79
3732 6348 5.523369 GCTGCTATATCCCATTTGTTTGTC 58.477 41.667 0.00 0.00 0.00 3.18
3736 6352 2.554032 GCGCTGCTATATCCCATTTGTT 59.446 45.455 0.00 0.00 0.00 2.83
3741 6357 1.135083 GTACGCGCTGCTATATCCCAT 60.135 52.381 5.73 0.00 0.00 4.00
3742 6358 0.242825 GTACGCGCTGCTATATCCCA 59.757 55.000 5.73 0.00 0.00 4.37
3743 6359 0.526662 AGTACGCGCTGCTATATCCC 59.473 55.000 5.73 0.00 0.00 3.85
3744 6360 1.199327 TCAGTACGCGCTGCTATATCC 59.801 52.381 5.73 0.00 36.49 2.59
3745 6361 2.613730 TCAGTACGCGCTGCTATATC 57.386 50.000 5.73 0.00 36.49 1.63
3757 6373 7.325338 CCTTGTGTATATAATCGGTTCAGTACG 59.675 40.741 0.00 0.00 0.00 3.67
3804 6420 8.527810 TGTAATCTGGTTCAGTTTTTGTCTTTT 58.472 29.630 0.00 0.00 32.61 2.27
3875 6491 9.399797 TCAATGTTATGCTACATGATTTCTCTT 57.600 29.630 0.00 0.00 38.69 2.85
3876 6492 8.969260 TCAATGTTATGCTACATGATTTCTCT 57.031 30.769 0.00 0.00 38.69 3.10
3910 6526 3.849563 AGGTAGAGATAGAGACGTGCT 57.150 47.619 0.00 0.00 0.00 4.40
3921 6537 9.016438 GCAAGCTTACTAGTATTAGGTAGAGAT 57.984 37.037 2.79 0.00 0.00 2.75
3922 6538 7.997223 TGCAAGCTTACTAGTATTAGGTAGAGA 59.003 37.037 2.79 0.00 0.00 3.10
3923 6539 8.077386 GTGCAAGCTTACTAGTATTAGGTAGAG 58.923 40.741 2.79 0.00 0.00 2.43
3924 6540 7.255035 CGTGCAAGCTTACTAGTATTAGGTAGA 60.255 40.741 2.79 0.00 0.00 2.59
3925 6541 6.856938 CGTGCAAGCTTACTAGTATTAGGTAG 59.143 42.308 2.79 0.00 0.00 3.18
3926 6542 6.319658 ACGTGCAAGCTTACTAGTATTAGGTA 59.680 38.462 2.79 0.00 0.00 3.08
3927 6543 5.126707 ACGTGCAAGCTTACTAGTATTAGGT 59.873 40.000 2.79 1.91 0.00 3.08
3928 6544 5.459107 CACGTGCAAGCTTACTAGTATTAGG 59.541 44.000 0.82 0.00 0.00 2.69
3929 6545 5.051641 GCACGTGCAAGCTTACTAGTATTAG 60.052 44.000 34.52 0.13 41.59 1.73
3930 6546 4.802039 GCACGTGCAAGCTTACTAGTATTA 59.198 41.667 34.52 0.00 41.59 0.98
3931 6547 3.617263 GCACGTGCAAGCTTACTAGTATT 59.383 43.478 34.52 0.00 41.59 1.89
4012 6629 8.665643 TTCAGTGAAAATTTTGCAGATGAAAT 57.334 26.923 8.47 0.00 0.00 2.17
4190 6808 2.176364 AGCTGGATTGTGGATTGCCTAT 59.824 45.455 0.00 0.00 34.31 2.57
4282 6901 5.844004 TCTTTCTCTCTGCTTTTACTTCGT 58.156 37.500 0.00 0.00 0.00 3.85
4389 7012 9.445878 CTCATGGATTGATATGTAAGCATAAGT 57.554 33.333 0.00 0.00 40.55 2.24
4631 7254 7.068962 TCGGATAGGACAAATACTGTGTCATTA 59.931 37.037 6.86 0.11 45.94 1.90
4655 7278 7.169982 GTGATGGTCCTCTGTCTAAAATATTCG 59.830 40.741 0.00 0.00 0.00 3.34
4660 7285 5.762179 TGTGATGGTCCTCTGTCTAAAAT 57.238 39.130 0.00 0.00 0.00 1.82
4715 7341 6.202762 CACATACAACTTAGTCTTTGTGCTGA 59.797 38.462 0.00 0.00 36.61 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.