Multiple sequence alignment - TraesCS1B01G085000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G085000 chr1B 100.000 4128 0 0 1 4128 69823187 69827314 0.000000e+00 7624
1 TraesCS1B01G085000 chr1D 94.090 3672 158 27 476 4110 49585601 49589250 0.000000e+00 5524
2 TraesCS1B01G085000 chr1D 87.692 195 22 2 243 437 30245806 30245614 4.150000e-55 226
3 TraesCS1B01G085000 chr1D 82.707 133 22 1 2653 2785 49434684 49434815 2.610000e-22 117
4 TraesCS1B01G085000 chr1A 94.882 1524 61 8 2600 4110 49098246 49099765 0.000000e+00 2366
5 TraesCS1B01G085000 chr1A 94.562 1324 58 5 595 1913 49096257 49097571 0.000000e+00 2034
6 TraesCS1B01G085000 chr1A 96.184 629 21 3 1991 2618 49097606 49098232 0.000000e+00 1026
7 TraesCS1B01G085000 chr1A 83.742 449 40 18 5 424 587932131 587932575 1.080000e-105 394
8 TraesCS1B01G085000 chr5B 85.619 452 42 13 1 437 460968213 460968656 1.750000e-123 453
9 TraesCS1B01G085000 chr3A 82.932 457 54 13 1 437 569268539 569268087 1.390000e-104 390
10 TraesCS1B01G085000 chr3A 82.328 464 47 19 1 437 205708257 205707802 1.810000e-98 370
11 TraesCS1B01G085000 chrUn 82.965 452 47 14 1 437 29910585 29911021 8.370000e-102 381
12 TraesCS1B01G085000 chr5A 81.624 468 52 18 1 437 603505106 603504642 1.410000e-94 357
13 TraesCS1B01G085000 chr3D 81.720 465 50 15 1 437 613132598 613133055 5.080000e-94 355
14 TraesCS1B01G085000 chr7D 81.681 464 49 18 1 437 614369630 614369176 1.830000e-93 353
15 TraesCS1B01G085000 chr6D 79.957 464 58 15 1 437 468915670 468915215 4.010000e-80 309
16 TraesCS1B01G085000 chr5D 82.320 362 39 15 92 437 217295516 217295164 1.450000e-74 291
17 TraesCS1B01G085000 chr2B 79.669 423 41 19 42 437 776688829 776689233 3.160000e-66 263
18 TraesCS1B01G085000 chr2D 85.000 240 28 7 202 437 114481156 114481391 1.920000e-58 237
19 TraesCS1B01G085000 chr2D 84.426 244 32 6 195 437 403481180 403481418 6.900000e-58 235
20 TraesCS1B01G085000 chr6A 86.321 212 24 5 227 437 565422013 565422220 4.150000e-55 226
21 TraesCS1B01G085000 chr3B 85.398 226 24 8 218 437 452700139 452699917 4.150000e-55 226
22 TraesCS1B01G085000 chr3B 78.884 251 29 16 202 437 743572133 743571892 9.250000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G085000 chr1B 69823187 69827314 4127 False 7624.000000 7624 100.000000 1 4128 1 chr1B.!!$F1 4127
1 TraesCS1B01G085000 chr1D 49585601 49589250 3649 False 5524.000000 5524 94.090000 476 4110 1 chr1D.!!$F2 3634
2 TraesCS1B01G085000 chr1A 49096257 49099765 3508 False 1808.666667 2366 95.209333 595 4110 3 chr1A.!!$F2 3515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.033504 GGTGTTCTTGACGAGCAGGA 59.966 55.0 0.00 0.0 33.26 3.86 F
248 249 0.034767 AGGAGACATGTGGCATGTGG 60.035 55.0 17.98 0.0 31.52 4.17 F
300 301 0.036306 CTTCGTTTAGGTGTGGGCCT 59.964 55.0 4.53 0.0 42.43 5.19 F
371 372 0.111446 TTGGAAAAGCCGACCATCCA 59.889 50.0 0.00 0.0 40.66 3.41 F
372 373 0.331278 TGGAAAAGCCGACCATCCAT 59.669 50.0 0.00 0.0 40.66 3.41 F
1822 1836 0.529337 ATTGCGCAGACGGAGATCAG 60.529 55.0 11.31 0.0 42.06 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 1435 1.002468 CAGGTTCACCGTTTGCTCTTG 60.002 52.381 0.00 0.0 42.08 3.02 R
1822 1836 1.226603 CTCGTACACCAGTAGCCGC 60.227 63.158 0.00 0.0 0.00 6.53 R
2247 2261 2.652095 CCCTTAGCGGTTCCGTGGA 61.652 63.158 12.81 0.0 0.00 4.02 R
2534 2548 5.702622 TTAGATGAATCGACAGCTTTTCG 57.297 39.130 8.00 8.0 37.66 3.46 R
2552 2566 6.240894 AGATTTGATCACTTGCTGGTTTAGA 58.759 36.000 0.00 0.0 0.00 2.10 R
3624 3683 0.673644 AACTGTTCGAGATTGGGGCG 60.674 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.087892 CAGGGTCACCGGCCTCTG 62.088 72.222 0.00 0.73 43.47 3.35
24 25 2.682494 GGTCACCGGCCTCTGGTA 60.682 66.667 0.00 0.00 37.72 3.25
25 26 2.064581 GGTCACCGGCCTCTGGTAT 61.065 63.158 0.00 0.00 37.72 2.73
26 27 1.144057 GTCACCGGCCTCTGGTATG 59.856 63.158 0.00 0.00 37.72 2.39
27 28 2.203070 CACCGGCCTCTGGTATGC 60.203 66.667 0.00 0.00 37.72 3.14
28 29 3.480133 ACCGGCCTCTGGTATGCC 61.480 66.667 0.00 0.00 38.15 4.40
29 30 3.164269 CCGGCCTCTGGTATGCCT 61.164 66.667 0.00 0.00 43.12 4.75
30 31 2.423446 CGGCCTCTGGTATGCCTC 59.577 66.667 0.00 0.00 43.12 4.70
31 32 2.832498 GGCCTCTGGTATGCCTCC 59.168 66.667 0.16 0.00 42.01 4.30
32 33 1.768077 GGCCTCTGGTATGCCTCCT 60.768 63.158 0.16 0.00 42.01 3.69
33 34 1.751563 GCCTCTGGTATGCCTCCTC 59.248 63.158 0.16 0.00 35.27 3.71
34 35 2.045280 CCTCTGGTATGCCTCCTCG 58.955 63.158 0.16 0.00 35.27 4.63
35 36 0.757188 CCTCTGGTATGCCTCCTCGT 60.757 60.000 0.16 0.00 35.27 4.18
36 37 0.671251 CTCTGGTATGCCTCCTCGTC 59.329 60.000 0.16 0.00 35.27 4.20
37 38 0.259065 TCTGGTATGCCTCCTCGTCT 59.741 55.000 0.16 0.00 35.27 4.18
38 39 0.671251 CTGGTATGCCTCCTCGTCTC 59.329 60.000 0.16 0.00 35.27 3.36
39 40 0.755698 TGGTATGCCTCCTCGTCTCC 60.756 60.000 0.16 0.00 35.27 3.71
40 41 0.755698 GGTATGCCTCCTCGTCTCCA 60.756 60.000 0.00 0.00 0.00 3.86
41 42 0.386113 GTATGCCTCCTCGTCTCCAC 59.614 60.000 0.00 0.00 0.00 4.02
42 43 0.755698 TATGCCTCCTCGTCTCCACC 60.756 60.000 0.00 0.00 0.00 4.61
43 44 2.363147 GCCTCCTCGTCTCCACCT 60.363 66.667 0.00 0.00 0.00 4.00
44 45 1.985116 GCCTCCTCGTCTCCACCTT 60.985 63.158 0.00 0.00 0.00 3.50
45 46 1.893786 CCTCCTCGTCTCCACCTTG 59.106 63.158 0.00 0.00 0.00 3.61
46 47 0.900647 CCTCCTCGTCTCCACCTTGT 60.901 60.000 0.00 0.00 0.00 3.16
47 48 0.528470 CTCCTCGTCTCCACCTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
48 49 0.178973 TCCTCGTCTCCACCTTGTCA 60.179 55.000 0.00 0.00 0.00 3.58
49 50 0.038159 CCTCGTCTCCACCTTGTCAC 60.038 60.000 0.00 0.00 0.00 3.67
50 51 0.962489 CTCGTCTCCACCTTGTCACT 59.038 55.000 0.00 0.00 0.00 3.41
51 52 2.160205 CTCGTCTCCACCTTGTCACTA 58.840 52.381 0.00 0.00 0.00 2.74
52 53 2.160205 TCGTCTCCACCTTGTCACTAG 58.840 52.381 0.00 0.00 0.00 2.57
53 54 1.202582 CGTCTCCACCTTGTCACTAGG 59.797 57.143 3.40 3.40 38.79 3.02
54 55 2.526432 GTCTCCACCTTGTCACTAGGA 58.474 52.381 12.76 0.00 36.58 2.94
55 56 2.494073 GTCTCCACCTTGTCACTAGGAG 59.506 54.545 12.76 3.89 43.05 3.69
56 57 1.205893 CTCCACCTTGTCACTAGGAGC 59.794 57.143 12.76 0.00 36.58 4.70
57 58 1.203187 TCCACCTTGTCACTAGGAGCT 60.203 52.381 12.76 0.00 36.58 4.09
58 59 1.205893 CCACCTTGTCACTAGGAGCTC 59.794 57.143 12.76 4.71 36.58 4.09
59 60 1.205893 CACCTTGTCACTAGGAGCTCC 59.794 57.143 26.22 26.22 36.58 4.70
60 61 0.457851 CCTTGTCACTAGGAGCTCCG 59.542 60.000 26.95 16.26 42.08 4.63
61 62 0.457851 CTTGTCACTAGGAGCTCCGG 59.542 60.000 26.95 23.90 42.08 5.14
62 63 1.605058 TTGTCACTAGGAGCTCCGGC 61.605 60.000 26.95 14.77 42.08 6.13
63 64 2.829003 TCACTAGGAGCTCCGGCG 60.829 66.667 26.95 20.04 44.37 6.46
64 65 2.829003 CACTAGGAGCTCCGGCGA 60.829 66.667 26.95 12.70 44.37 5.54
65 66 2.517402 ACTAGGAGCTCCGGCGAG 60.517 66.667 26.95 22.47 44.37 5.03
73 74 3.597728 CTCCGGCGAGCTCCTACC 61.598 72.222 9.30 6.58 0.00 3.18
74 75 4.435970 TCCGGCGAGCTCCTACCA 62.436 66.667 9.30 0.00 0.00 3.25
75 76 3.905678 CCGGCGAGCTCCTACCAG 61.906 72.222 9.30 4.41 0.00 4.00
76 77 4.577246 CGGCGAGCTCCTACCAGC 62.577 72.222 8.47 4.18 39.99 4.85
77 78 3.461773 GGCGAGCTCCTACCAGCA 61.462 66.667 8.47 0.00 42.40 4.41
78 79 2.105930 GCGAGCTCCTACCAGCAG 59.894 66.667 8.47 0.00 42.40 4.24
79 80 2.105930 CGAGCTCCTACCAGCAGC 59.894 66.667 8.47 0.00 42.40 5.25
80 81 2.714991 CGAGCTCCTACCAGCAGCA 61.715 63.158 8.47 0.00 42.40 4.41
81 82 1.143620 GAGCTCCTACCAGCAGCAG 59.856 63.158 0.87 0.00 42.40 4.24
82 83 1.611851 AGCTCCTACCAGCAGCAGT 60.612 57.895 0.00 0.00 42.40 4.40
83 84 0.324738 AGCTCCTACCAGCAGCAGTA 60.325 55.000 0.00 0.00 42.40 2.74
84 85 0.103937 GCTCCTACCAGCAGCAGTAG 59.896 60.000 13.34 13.34 39.43 2.57
85 86 1.479709 CTCCTACCAGCAGCAGTAGT 58.520 55.000 17.11 2.78 35.25 2.73
86 87 1.135915 CTCCTACCAGCAGCAGTAGTG 59.864 57.143 17.11 10.99 35.25 2.74
87 88 0.176680 CCTACCAGCAGCAGTAGTGG 59.823 60.000 17.11 8.55 35.25 4.00
88 89 1.186200 CTACCAGCAGCAGTAGTGGA 58.814 55.000 12.44 0.00 32.90 4.02
89 90 1.135915 CTACCAGCAGCAGTAGTGGAG 59.864 57.143 12.44 0.59 32.90 3.86
90 91 1.220206 CCAGCAGCAGTAGTGGAGG 59.780 63.158 0.00 0.00 31.04 4.30
91 92 1.220206 CAGCAGCAGTAGTGGAGGG 59.780 63.158 0.00 0.00 0.00 4.30
92 93 1.992277 AGCAGCAGTAGTGGAGGGG 60.992 63.158 0.00 0.00 0.00 4.79
93 94 3.036429 GCAGCAGTAGTGGAGGGGG 62.036 68.421 0.00 0.00 0.00 5.40
107 108 2.037847 GGGGGCTTGAAGTGGCAT 59.962 61.111 0.00 0.00 0.00 4.40
108 109 1.306296 GGGGGCTTGAAGTGGCATA 59.694 57.895 0.00 0.00 0.00 3.14
109 110 0.753111 GGGGGCTTGAAGTGGCATAG 60.753 60.000 0.00 0.00 0.00 2.23
110 111 0.753111 GGGGCTTGAAGTGGCATAGG 60.753 60.000 0.00 0.00 0.00 2.57
111 112 0.753111 GGGCTTGAAGTGGCATAGGG 60.753 60.000 0.00 0.00 0.00 3.53
112 113 1.387295 GGCTTGAAGTGGCATAGGGC 61.387 60.000 0.00 0.00 43.74 5.19
113 114 1.718757 GCTTGAAGTGGCATAGGGCG 61.719 60.000 0.00 0.00 46.16 6.13
114 115 1.077787 TTGAAGTGGCATAGGGCGG 60.078 57.895 0.00 0.00 46.16 6.13
115 116 1.847798 TTGAAGTGGCATAGGGCGGT 61.848 55.000 0.00 0.00 46.16 5.68
116 117 1.819632 GAAGTGGCATAGGGCGGTG 60.820 63.158 0.00 0.00 46.16 4.94
117 118 3.344137 AAGTGGCATAGGGCGGTGG 62.344 63.158 0.00 0.00 46.16 4.61
118 119 4.109675 GTGGCATAGGGCGGTGGT 62.110 66.667 0.00 0.00 46.16 4.16
119 120 3.792736 TGGCATAGGGCGGTGGTC 61.793 66.667 0.00 0.00 46.16 4.02
120 121 4.910585 GGCATAGGGCGGTGGTCG 62.911 72.222 0.00 0.00 46.16 4.79
121 122 4.910585 GCATAGGGCGGTGGTCGG 62.911 72.222 0.00 0.00 39.69 4.79
122 123 3.151710 CATAGGGCGGTGGTCGGA 61.152 66.667 0.00 0.00 39.69 4.55
123 124 3.152400 ATAGGGCGGTGGTCGGAC 61.152 66.667 0.00 0.00 39.69 4.79
131 132 4.595538 GTGGTCGGACGTGGCACA 62.596 66.667 19.09 0.00 0.00 4.57
132 133 4.293648 TGGTCGGACGTGGCACAG 62.294 66.667 19.09 12.74 41.80 3.66
141 142 3.050275 GTGGCACAGGACGAAGGC 61.050 66.667 13.86 0.00 41.80 4.35
142 143 4.680237 TGGCACAGGACGAAGGCG 62.680 66.667 0.00 0.00 44.79 5.52
152 153 4.451150 CGAAGGCGTGGGCTAGCA 62.451 66.667 18.24 0.00 37.50 3.49
153 154 2.046314 GAAGGCGTGGGCTAGCAA 60.046 61.111 18.24 0.33 37.50 3.91
154 155 1.452108 GAAGGCGTGGGCTAGCAAT 60.452 57.895 18.24 0.00 37.50 3.56
155 156 1.718757 GAAGGCGTGGGCTAGCAATG 61.719 60.000 18.24 10.60 37.50 2.82
156 157 2.438434 GGCGTGGGCTAGCAATGT 60.438 61.111 18.24 0.00 39.81 2.71
157 158 2.764314 GGCGTGGGCTAGCAATGTG 61.764 63.158 18.24 2.93 39.81 3.21
158 159 2.764314 GCGTGGGCTAGCAATGTGG 61.764 63.158 18.24 1.22 35.83 4.17
159 160 1.377202 CGTGGGCTAGCAATGTGGT 60.377 57.895 18.24 0.00 0.00 4.16
160 161 1.369091 CGTGGGCTAGCAATGTGGTC 61.369 60.000 18.24 0.00 0.00 4.02
161 162 1.078497 TGGGCTAGCAATGTGGTCG 60.078 57.895 18.24 0.00 0.00 4.79
162 163 1.819632 GGGCTAGCAATGTGGTCGG 60.820 63.158 18.24 0.00 0.00 4.79
163 164 2.472909 GGCTAGCAATGTGGTCGGC 61.473 63.158 18.24 0.00 0.00 5.54
164 165 1.745115 GCTAGCAATGTGGTCGGCA 60.745 57.895 10.63 0.00 30.89 5.69
165 166 1.709147 GCTAGCAATGTGGTCGGCAG 61.709 60.000 10.63 0.00 30.89 4.85
166 167 1.709147 CTAGCAATGTGGTCGGCAGC 61.709 60.000 0.00 0.00 0.00 5.25
167 168 4.120331 GCAATGTGGTCGGCAGCC 62.120 66.667 0.00 0.00 0.00 4.85
168 169 2.672651 CAATGTGGTCGGCAGCCA 60.673 61.111 13.30 0.00 0.00 4.75
169 170 2.048023 CAATGTGGTCGGCAGCCAT 61.048 57.895 13.30 0.00 38.40 4.40
170 171 2.048023 AATGTGGTCGGCAGCCATG 61.048 57.895 13.30 0.00 38.40 3.66
171 172 4.720902 TGTGGTCGGCAGCCATGG 62.721 66.667 13.30 7.63 38.40 3.66
184 185 2.706636 CCATGGCGGTTCTATGGTG 58.293 57.895 0.00 0.00 45.67 4.17
185 186 0.107214 CCATGGCGGTTCTATGGTGT 60.107 55.000 0.00 0.00 45.67 4.16
186 187 1.681780 CCATGGCGGTTCTATGGTGTT 60.682 52.381 0.00 0.00 45.67 3.32
187 188 1.670811 CATGGCGGTTCTATGGTGTTC 59.329 52.381 0.00 0.00 30.83 3.18
188 189 0.981183 TGGCGGTTCTATGGTGTTCT 59.019 50.000 0.00 0.00 0.00 3.01
189 190 1.349688 TGGCGGTTCTATGGTGTTCTT 59.650 47.619 0.00 0.00 0.00 2.52
190 191 1.737793 GGCGGTTCTATGGTGTTCTTG 59.262 52.381 0.00 0.00 0.00 3.02
191 192 2.614481 GGCGGTTCTATGGTGTTCTTGA 60.614 50.000 0.00 0.00 0.00 3.02
192 193 2.415512 GCGGTTCTATGGTGTTCTTGAC 59.584 50.000 0.00 0.00 0.00 3.18
193 194 2.666508 CGGTTCTATGGTGTTCTTGACG 59.333 50.000 0.00 0.00 0.00 4.35
194 195 3.613193 CGGTTCTATGGTGTTCTTGACGA 60.613 47.826 0.00 0.00 0.00 4.20
195 196 3.927142 GGTTCTATGGTGTTCTTGACGAG 59.073 47.826 0.00 0.00 0.00 4.18
196 197 3.232213 TCTATGGTGTTCTTGACGAGC 57.768 47.619 0.00 0.00 0.00 5.03
197 198 2.560981 TCTATGGTGTTCTTGACGAGCA 59.439 45.455 0.00 0.00 0.00 4.26
198 199 1.800805 ATGGTGTTCTTGACGAGCAG 58.199 50.000 0.00 0.00 33.26 4.24
199 200 0.249868 TGGTGTTCTTGACGAGCAGG 60.250 55.000 0.00 0.00 33.26 4.85
200 201 0.033504 GGTGTTCTTGACGAGCAGGA 59.966 55.000 0.00 0.00 33.26 3.86
201 202 1.540363 GGTGTTCTTGACGAGCAGGAA 60.540 52.381 0.00 0.00 39.91 3.36
202 203 1.795286 GTGTTCTTGACGAGCAGGAAG 59.205 52.381 7.56 0.00 42.41 3.46
203 204 1.686587 TGTTCTTGACGAGCAGGAAGA 59.313 47.619 7.56 4.80 42.41 2.87
204 205 2.288457 TGTTCTTGACGAGCAGGAAGAG 60.288 50.000 7.56 0.00 42.41 2.85
205 206 1.621992 TCTTGACGAGCAGGAAGAGT 58.378 50.000 0.00 0.00 28.55 3.24
206 207 1.270826 TCTTGACGAGCAGGAAGAGTG 59.729 52.381 0.00 0.00 28.55 3.51
207 208 0.318441 TTGACGAGCAGGAAGAGTGG 59.682 55.000 0.00 0.00 0.00 4.00
208 209 0.539669 TGACGAGCAGGAAGAGTGGA 60.540 55.000 0.00 0.00 0.00 4.02
209 210 0.172352 GACGAGCAGGAAGAGTGGAG 59.828 60.000 0.00 0.00 0.00 3.86
210 211 0.251386 ACGAGCAGGAAGAGTGGAGA 60.251 55.000 0.00 0.00 0.00 3.71
211 212 0.891373 CGAGCAGGAAGAGTGGAGAA 59.109 55.000 0.00 0.00 0.00 2.87
212 213 1.135141 CGAGCAGGAAGAGTGGAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
213 214 2.175202 GAGCAGGAAGAGTGGAGAAGA 58.825 52.381 0.00 0.00 0.00 2.87
214 215 2.564947 GAGCAGGAAGAGTGGAGAAGAA 59.435 50.000 0.00 0.00 0.00 2.52
215 216 2.566724 AGCAGGAAGAGTGGAGAAGAAG 59.433 50.000 0.00 0.00 0.00 2.85
216 217 2.564947 GCAGGAAGAGTGGAGAAGAAGA 59.435 50.000 0.00 0.00 0.00 2.87
217 218 3.007398 GCAGGAAGAGTGGAGAAGAAGAA 59.993 47.826 0.00 0.00 0.00 2.52
218 219 4.819769 CAGGAAGAGTGGAGAAGAAGAAG 58.180 47.826 0.00 0.00 0.00 2.85
219 220 3.837731 AGGAAGAGTGGAGAAGAAGAAGG 59.162 47.826 0.00 0.00 0.00 3.46
220 221 3.835395 GGAAGAGTGGAGAAGAAGAAGGA 59.165 47.826 0.00 0.00 0.00 3.36
221 222 4.284746 GGAAGAGTGGAGAAGAAGAAGGAA 59.715 45.833 0.00 0.00 0.00 3.36
222 223 5.478407 GAAGAGTGGAGAAGAAGAAGGAAG 58.522 45.833 0.00 0.00 0.00 3.46
223 224 3.837731 AGAGTGGAGAAGAAGAAGGAAGG 59.162 47.826 0.00 0.00 0.00 3.46
224 225 2.304470 AGTGGAGAAGAAGAAGGAAGGC 59.696 50.000 0.00 0.00 0.00 4.35
225 226 2.039084 GTGGAGAAGAAGAAGGAAGGCA 59.961 50.000 0.00 0.00 0.00 4.75
226 227 2.304180 TGGAGAAGAAGAAGGAAGGCAG 59.696 50.000 0.00 0.00 0.00 4.85
227 228 2.569404 GGAGAAGAAGAAGGAAGGCAGA 59.431 50.000 0.00 0.00 0.00 4.26
228 229 3.369366 GGAGAAGAAGAAGGAAGGCAGAG 60.369 52.174 0.00 0.00 0.00 3.35
229 230 3.513515 GAGAAGAAGAAGGAAGGCAGAGA 59.486 47.826 0.00 0.00 0.00 3.10
230 231 3.515104 AGAAGAAGAAGGAAGGCAGAGAG 59.485 47.826 0.00 0.00 0.00 3.20
231 232 2.187100 AGAAGAAGGAAGGCAGAGAGG 58.813 52.381 0.00 0.00 0.00 3.69
232 233 2.183679 GAAGAAGGAAGGCAGAGAGGA 58.816 52.381 0.00 0.00 0.00 3.71
233 234 1.864669 AGAAGGAAGGCAGAGAGGAG 58.135 55.000 0.00 0.00 0.00 3.69
234 235 1.360852 AGAAGGAAGGCAGAGAGGAGA 59.639 52.381 0.00 0.00 0.00 3.71
235 236 1.480545 GAAGGAAGGCAGAGAGGAGAC 59.519 57.143 0.00 0.00 0.00 3.36
236 237 0.411452 AGGAAGGCAGAGAGGAGACA 59.589 55.000 0.00 0.00 0.00 3.41
237 238 1.008206 AGGAAGGCAGAGAGGAGACAT 59.992 52.381 0.00 0.00 0.00 3.06
238 239 1.138661 GGAAGGCAGAGAGGAGACATG 59.861 57.143 0.00 0.00 0.00 3.21
239 240 1.830477 GAAGGCAGAGAGGAGACATGT 59.170 52.381 0.00 0.00 0.00 3.21
240 241 1.193323 AGGCAGAGAGGAGACATGTG 58.807 55.000 1.15 0.00 0.00 3.21
241 242 0.177604 GGCAGAGAGGAGACATGTGG 59.822 60.000 1.15 0.00 0.00 4.17
242 243 0.461693 GCAGAGAGGAGACATGTGGC 60.462 60.000 1.15 0.00 0.00 5.01
243 244 0.900421 CAGAGAGGAGACATGTGGCA 59.100 55.000 1.15 0.00 0.00 4.92
244 245 1.485480 CAGAGAGGAGACATGTGGCAT 59.515 52.381 1.15 0.00 0.00 4.40
245 246 1.485480 AGAGAGGAGACATGTGGCATG 59.515 52.381 1.15 7.48 0.00 4.06
246 247 1.209019 GAGAGGAGACATGTGGCATGT 59.791 52.381 13.74 13.74 34.52 3.21
247 248 1.065636 AGAGGAGACATGTGGCATGTG 60.066 52.381 17.98 0.00 31.52 3.21
248 249 0.034767 AGGAGACATGTGGCATGTGG 60.035 55.000 17.98 0.00 31.52 4.17
249 250 1.033746 GGAGACATGTGGCATGTGGG 61.034 60.000 17.98 0.00 31.52 4.61
250 251 1.660560 GAGACATGTGGCATGTGGGC 61.661 60.000 17.98 5.60 43.73 5.36
263 264 2.858476 TGGGCCCCACATGTCAGT 60.858 61.111 22.27 0.00 0.00 3.41
264 265 2.440599 GGGCCCCACATGTCAGTT 59.559 61.111 12.23 0.00 0.00 3.16
265 266 1.136961 TGGGCCCCACATGTCAGTTA 61.137 55.000 22.27 0.00 0.00 2.24
266 267 0.039035 GGGCCCCACATGTCAGTTAA 59.961 55.000 12.23 0.00 0.00 2.01
267 268 1.173913 GGCCCCACATGTCAGTTAAC 58.826 55.000 0.00 0.00 0.00 2.01
268 269 0.802494 GCCCCACATGTCAGTTAACG 59.198 55.000 0.00 0.00 0.00 3.18
269 270 1.448985 CCCCACATGTCAGTTAACGG 58.551 55.000 0.00 0.00 0.00 4.44
270 271 1.271163 CCCCACATGTCAGTTAACGGT 60.271 52.381 5.64 0.00 0.00 4.83
271 272 2.073816 CCCACATGTCAGTTAACGGTC 58.926 52.381 5.64 1.01 0.00 4.79
272 273 2.549134 CCCACATGTCAGTTAACGGTCA 60.549 50.000 7.94 7.94 0.00 4.02
273 274 3.135225 CCACATGTCAGTTAACGGTCAA 58.865 45.455 9.34 0.00 0.00 3.18
274 275 3.562141 CCACATGTCAGTTAACGGTCAAA 59.438 43.478 9.34 0.00 0.00 2.69
275 276 4.523813 CACATGTCAGTTAACGGTCAAAC 58.476 43.478 9.34 0.05 0.00 2.93
276 277 4.272504 CACATGTCAGTTAACGGTCAAACT 59.727 41.667 9.34 3.69 36.38 2.66
277 278 5.464057 CACATGTCAGTTAACGGTCAAACTA 59.536 40.000 9.34 0.00 34.23 2.24
278 279 6.018588 CACATGTCAGTTAACGGTCAAACTAA 60.019 38.462 9.34 0.00 34.23 2.24
279 280 6.708949 ACATGTCAGTTAACGGTCAAACTAAT 59.291 34.615 9.34 2.43 34.23 1.73
280 281 6.533819 TGTCAGTTAACGGTCAAACTAATG 57.466 37.500 5.64 0.00 34.23 1.90
281 282 5.049954 TGTCAGTTAACGGTCAAACTAATGC 60.050 40.000 5.64 0.00 34.23 3.56
282 283 5.178809 GTCAGTTAACGGTCAAACTAATGCT 59.821 40.000 5.64 0.00 34.23 3.79
283 284 5.761234 TCAGTTAACGGTCAAACTAATGCTT 59.239 36.000 5.64 0.00 34.23 3.91
284 285 6.073440 TCAGTTAACGGTCAAACTAATGCTTC 60.073 38.462 5.64 0.00 34.23 3.86
285 286 3.806316 AACGGTCAAACTAATGCTTCG 57.194 42.857 0.00 0.00 0.00 3.79
286 287 2.762745 ACGGTCAAACTAATGCTTCGT 58.237 42.857 0.00 0.00 0.00 3.85
287 288 3.135994 ACGGTCAAACTAATGCTTCGTT 58.864 40.909 0.00 0.00 0.00 3.85
288 289 3.562557 ACGGTCAAACTAATGCTTCGTTT 59.437 39.130 0.00 0.00 0.00 3.60
289 290 4.751098 ACGGTCAAACTAATGCTTCGTTTA 59.249 37.500 0.00 0.00 30.41 2.01
290 291 5.107220 ACGGTCAAACTAATGCTTCGTTTAG 60.107 40.000 0.00 0.00 30.41 1.85
291 292 5.628134 GGTCAAACTAATGCTTCGTTTAGG 58.372 41.667 0.00 0.00 31.15 2.69
292 293 5.180680 GGTCAAACTAATGCTTCGTTTAGGT 59.819 40.000 0.00 0.00 31.15 3.08
293 294 6.077838 GTCAAACTAATGCTTCGTTTAGGTG 58.922 40.000 0.00 0.00 31.15 4.00
294 295 5.761234 TCAAACTAATGCTTCGTTTAGGTGT 59.239 36.000 0.00 0.00 31.15 4.16
295 296 5.607119 AACTAATGCTTCGTTTAGGTGTG 57.393 39.130 0.00 0.00 31.15 3.82
296 297 4.000988 ACTAATGCTTCGTTTAGGTGTGG 58.999 43.478 0.00 0.00 31.15 4.17
297 298 1.821216 ATGCTTCGTTTAGGTGTGGG 58.179 50.000 0.00 0.00 0.00 4.61
298 299 0.887387 TGCTTCGTTTAGGTGTGGGC 60.887 55.000 0.00 0.00 0.00 5.36
299 300 1.583495 GCTTCGTTTAGGTGTGGGCC 61.583 60.000 0.00 0.00 0.00 5.80
300 301 0.036306 CTTCGTTTAGGTGTGGGCCT 59.964 55.000 4.53 0.00 42.43 5.19
301 302 0.250553 TTCGTTTAGGTGTGGGCCTG 60.251 55.000 4.53 0.00 39.60 4.85
302 303 1.122632 TCGTTTAGGTGTGGGCCTGA 61.123 55.000 4.53 0.00 39.60 3.86
303 304 0.953960 CGTTTAGGTGTGGGCCTGAC 60.954 60.000 4.53 0.00 39.60 3.51
304 305 0.608308 GTTTAGGTGTGGGCCTGACC 60.608 60.000 14.71 14.71 39.60 4.02
305 306 0.770557 TTTAGGTGTGGGCCTGACCT 60.771 55.000 24.66 24.66 42.87 3.85
306 307 1.488705 TTAGGTGTGGGCCTGACCTG 61.489 60.000 27.74 0.00 40.45 4.00
315 316 3.806941 GCCTGACCTGCCATAATCA 57.193 52.632 0.00 0.00 0.00 2.57
316 317 1.312815 GCCTGACCTGCCATAATCAC 58.687 55.000 0.00 0.00 0.00 3.06
317 318 1.586422 CCTGACCTGCCATAATCACG 58.414 55.000 0.00 0.00 0.00 4.35
318 319 1.138859 CCTGACCTGCCATAATCACGA 59.861 52.381 0.00 0.00 0.00 4.35
319 320 2.224378 CCTGACCTGCCATAATCACGAT 60.224 50.000 0.00 0.00 0.00 3.73
320 321 3.062763 CTGACCTGCCATAATCACGATC 58.937 50.000 0.00 0.00 0.00 3.69
321 322 2.433970 TGACCTGCCATAATCACGATCA 59.566 45.455 0.00 0.00 0.00 2.92
322 323 3.118445 TGACCTGCCATAATCACGATCAA 60.118 43.478 0.00 0.00 0.00 2.57
323 324 4.067896 GACCTGCCATAATCACGATCAAT 58.932 43.478 0.00 0.00 0.00 2.57
324 325 4.464008 ACCTGCCATAATCACGATCAATT 58.536 39.130 0.00 0.00 0.00 2.32
325 326 4.276678 ACCTGCCATAATCACGATCAATTG 59.723 41.667 0.00 0.00 0.00 2.32
326 327 4.516321 CCTGCCATAATCACGATCAATTGA 59.484 41.667 11.26 11.26 0.00 2.57
327 328 5.182570 CCTGCCATAATCACGATCAATTGAT 59.817 40.000 20.85 20.85 37.51 2.57
328 329 6.372381 CCTGCCATAATCACGATCAATTGATA 59.628 38.462 20.75 6.01 34.37 2.15
329 330 7.094677 CCTGCCATAATCACGATCAATTGATAA 60.095 37.037 20.75 7.68 34.37 1.75
330 331 7.809665 TGCCATAATCACGATCAATTGATAAG 58.190 34.615 20.75 18.62 34.37 1.73
331 332 6.744537 GCCATAATCACGATCAATTGATAAGC 59.255 38.462 20.75 8.10 34.37 3.09
332 333 7.573656 GCCATAATCACGATCAATTGATAAGCA 60.574 37.037 20.75 6.51 34.37 3.91
333 334 7.747799 CCATAATCACGATCAATTGATAAGCAC 59.252 37.037 20.75 7.39 34.37 4.40
334 335 6.932356 AATCACGATCAATTGATAAGCACT 57.068 33.333 20.75 0.00 34.37 4.40
335 336 6.932356 ATCACGATCAATTGATAAGCACTT 57.068 33.333 20.75 0.00 34.37 3.16
336 337 6.110543 TCACGATCAATTGATAAGCACTTG 57.889 37.500 20.75 11.53 38.20 3.16
337 338 5.065090 TCACGATCAATTGATAAGCACTTGG 59.935 40.000 20.75 1.67 37.64 3.61
338 339 4.943705 ACGATCAATTGATAAGCACTTGGT 59.056 37.500 20.75 2.30 37.64 3.67
339 340 5.163723 ACGATCAATTGATAAGCACTTGGTG 60.164 40.000 20.75 2.81 37.64 4.17
340 341 5.065090 CGATCAATTGATAAGCACTTGGTGA 59.935 40.000 20.75 0.00 37.64 4.02
341 342 6.238566 CGATCAATTGATAAGCACTTGGTGAT 60.239 38.462 20.75 0.00 37.64 3.06
342 343 6.839124 TCAATTGATAAGCACTTGGTGATT 57.161 33.333 3.38 6.43 44.45 2.57
343 344 7.230849 TCAATTGATAAGCACTTGGTGATTT 57.769 32.000 3.38 0.94 39.15 2.17
344 345 7.092079 TCAATTGATAAGCACTTGGTGATTTG 58.908 34.615 3.38 0.00 39.15 2.32
345 346 5.389859 TTGATAAGCACTTGGTGATTTGG 57.610 39.130 6.49 0.00 39.15 3.28
346 347 3.763360 TGATAAGCACTTGGTGATTTGGG 59.237 43.478 6.49 0.00 39.15 4.12
347 348 2.086610 AAGCACTTGGTGATTTGGGT 57.913 45.000 1.57 0.00 39.15 4.51
348 349 2.086610 AGCACTTGGTGATTTGGGTT 57.913 45.000 1.57 0.00 35.23 4.11
349 350 2.397597 AGCACTTGGTGATTTGGGTTT 58.602 42.857 1.57 0.00 35.23 3.27
350 351 2.771372 AGCACTTGGTGATTTGGGTTTT 59.229 40.909 1.57 0.00 35.23 2.43
351 352 3.199727 AGCACTTGGTGATTTGGGTTTTT 59.800 39.130 1.57 0.00 35.23 1.94
369 370 3.378911 TTTTTGGAAAAGCCGACCATC 57.621 42.857 0.00 0.00 40.66 3.51
370 371 1.253100 TTTGGAAAAGCCGACCATCC 58.747 50.000 0.00 0.00 40.66 3.51
371 372 0.111446 TTGGAAAAGCCGACCATCCA 59.889 50.000 0.00 0.00 40.66 3.41
372 373 0.331278 TGGAAAAGCCGACCATCCAT 59.669 50.000 0.00 0.00 40.66 3.41
373 374 1.272425 TGGAAAAGCCGACCATCCATT 60.272 47.619 0.00 0.00 40.66 3.16
374 375 1.824852 GGAAAAGCCGACCATCCATTT 59.175 47.619 0.00 0.00 0.00 2.32
375 376 2.417243 GGAAAAGCCGACCATCCATTTG 60.417 50.000 0.00 0.00 0.00 2.32
376 377 1.185315 AAAGCCGACCATCCATTTGG 58.815 50.000 0.00 0.00 42.82 3.28
389 390 6.830912 CCATCCATTTGGTAGTTATCTGAGA 58.169 40.000 0.00 0.00 36.34 3.27
390 391 7.282585 CCATCCATTTGGTAGTTATCTGAGAA 58.717 38.462 0.00 0.00 36.34 2.87
391 392 7.775093 CCATCCATTTGGTAGTTATCTGAGAAA 59.225 37.037 0.00 0.00 36.34 2.52
392 393 9.177608 CATCCATTTGGTAGTTATCTGAGAAAA 57.822 33.333 0.00 0.00 36.34 2.29
393 394 9.753674 ATCCATTTGGTAGTTATCTGAGAAAAA 57.246 29.630 0.00 0.00 36.34 1.94
394 395 9.753674 TCCATTTGGTAGTTATCTGAGAAAAAT 57.246 29.630 0.00 0.00 36.34 1.82
404 405 9.908152 AGTTATCTGAGAAAAATTAAAAACCGG 57.092 29.630 0.00 0.00 0.00 5.28
405 406 9.687210 GTTATCTGAGAAAAATTAAAAACCGGT 57.313 29.630 0.00 0.00 0.00 5.28
408 409 8.454570 TCTGAGAAAAATTAAAAACCGGTAGT 57.545 30.769 8.00 0.00 0.00 2.73
409 410 8.905850 TCTGAGAAAAATTAAAAACCGGTAGTT 58.094 29.630 8.00 7.82 41.81 2.24
433 434 7.957992 TTTTTCAGAACCCTAACCTGTAAAA 57.042 32.000 0.00 0.00 35.97 1.52
434 435 8.541899 TTTTTCAGAACCCTAACCTGTAAAAT 57.458 30.769 0.00 0.00 34.56 1.82
435 436 9.643735 TTTTTCAGAACCCTAACCTGTAAAATA 57.356 29.630 0.00 0.00 34.56 1.40
436 437 8.857694 TTTCAGAACCCTAACCTGTAAAATAG 57.142 34.615 0.00 0.00 0.00 1.73
437 438 7.801893 TCAGAACCCTAACCTGTAAAATAGA 57.198 36.000 0.00 0.00 0.00 1.98
438 439 7.848128 TCAGAACCCTAACCTGTAAAATAGAG 58.152 38.462 0.00 0.00 0.00 2.43
439 440 7.676893 TCAGAACCCTAACCTGTAAAATAGAGA 59.323 37.037 0.00 0.00 0.00 3.10
440 441 7.764901 CAGAACCCTAACCTGTAAAATAGAGAC 59.235 40.741 0.00 0.00 0.00 3.36
441 442 6.218108 ACCCTAACCTGTAAAATAGAGACG 57.782 41.667 0.00 0.00 0.00 4.18
442 443 5.128335 ACCCTAACCTGTAAAATAGAGACGG 59.872 44.000 0.00 0.00 0.00 4.79
443 444 5.361857 CCCTAACCTGTAAAATAGAGACGGA 59.638 44.000 0.00 0.00 0.00 4.69
444 445 6.271566 CCTAACCTGTAAAATAGAGACGGAC 58.728 44.000 0.00 0.00 0.00 4.79
445 446 5.733620 AACCTGTAAAATAGAGACGGACA 57.266 39.130 0.00 0.00 0.00 4.02
446 447 5.733620 ACCTGTAAAATAGAGACGGACAA 57.266 39.130 0.00 0.00 0.00 3.18
447 448 6.295719 ACCTGTAAAATAGAGACGGACAAT 57.704 37.500 0.00 0.00 0.00 2.71
448 449 7.414222 ACCTGTAAAATAGAGACGGACAATA 57.586 36.000 0.00 0.00 0.00 1.90
449 450 8.019656 ACCTGTAAAATAGAGACGGACAATAT 57.980 34.615 0.00 0.00 0.00 1.28
450 451 9.139734 ACCTGTAAAATAGAGACGGACAATATA 57.860 33.333 0.00 0.00 0.00 0.86
459 460 7.772332 AGAGACGGACAATATATTTCAACAC 57.228 36.000 0.00 0.00 0.00 3.32
460 461 6.475727 AGAGACGGACAATATATTTCAACACG 59.524 38.462 0.00 0.00 0.00 4.49
461 462 6.103997 AGACGGACAATATATTTCAACACGT 58.896 36.000 0.00 1.78 0.00 4.49
462 463 6.255020 AGACGGACAATATATTTCAACACGTC 59.745 38.462 17.77 17.77 44.07 4.34
463 464 5.870433 ACGGACAATATATTTCAACACGTCA 59.130 36.000 10.33 0.00 0.00 4.35
464 465 6.182634 CGGACAATATATTTCAACACGTCAC 58.817 40.000 10.33 2.54 0.00 3.67
465 466 6.183360 CGGACAATATATTTCAACACGTCACA 60.183 38.462 10.33 0.00 0.00 3.58
466 467 7.523219 GGACAATATATTTCAACACGTCACAA 58.477 34.615 10.33 0.00 0.00 3.33
467 468 7.480542 GGACAATATATTTCAACACGTCACAAC 59.519 37.037 10.33 0.00 0.00 3.32
468 469 7.866729 ACAATATATTTCAACACGTCACAACA 58.133 30.769 0.00 0.00 0.00 3.33
469 470 8.015087 ACAATATATTTCAACACGTCACAACAG 58.985 33.333 0.00 0.00 0.00 3.16
470 471 7.899178 ATATATTTCAACACGTCACAACAGA 57.101 32.000 0.00 0.00 0.00 3.41
471 472 3.733024 TTTCAACACGTCACAACAGAC 57.267 42.857 0.00 0.00 35.19 3.51
472 473 2.665649 TCAACACGTCACAACAGACT 57.334 45.000 0.00 0.00 36.38 3.24
473 474 2.536365 TCAACACGTCACAACAGACTC 58.464 47.619 0.00 0.00 36.38 3.36
474 475 2.094442 TCAACACGTCACAACAGACTCA 60.094 45.455 0.00 0.00 36.38 3.41
500 501 3.018598 GCATCTGCTAGAAGCGACATA 57.981 47.619 0.00 0.00 46.26 2.29
521 522 8.922931 ACATAATTGAAGTGGCATATGACATA 57.077 30.769 15.89 1.02 34.33 2.29
529 530 1.614317 GGCATATGACATAGGGTGCCC 60.614 57.143 20.91 6.54 44.76 5.36
562 563 3.502211 CACTATTCCAACAACAGGGACAC 59.498 47.826 0.00 0.00 31.59 3.67
563 564 2.746279 ATTCCAACAACAGGGACACA 57.254 45.000 0.00 0.00 31.59 3.72
566 567 2.096248 TCCAACAACAGGGACACAAAC 58.904 47.619 0.00 0.00 0.00 2.93
589 591 1.305549 AGCAGGCCATTTCCCCTTG 60.306 57.895 5.01 0.00 0.00 3.61
591 593 1.891722 GCAGGCCATTTCCCCTTGTG 61.892 60.000 5.01 0.00 0.00 3.33
592 594 1.079073 AGGCCATTTCCCCTTGTGG 59.921 57.895 5.01 0.00 34.84 4.17
593 595 1.078347 GGCCATTTCCCCTTGTGGA 59.922 57.895 0.00 0.00 35.39 4.02
596 598 2.625617 GGCCATTTCCCCTTGTGGAATA 60.626 50.000 0.00 0.00 43.72 1.75
635 638 7.118680 CCAACAAATGAGAAAATTCAGGGAATG 59.881 37.037 0.00 0.00 32.14 2.67
637 640 8.142485 ACAAATGAGAAAATTCAGGGAATGAT 57.858 30.769 0.00 0.00 37.89 2.45
671 674 1.588239 TCCAGTGCATTCCAGAGGAT 58.412 50.000 0.00 0.00 0.00 3.24
674 677 0.917533 AGTGCATTCCAGAGGATGCT 59.082 50.000 7.77 0.00 37.24 3.79
692 695 2.612760 TGATCTTCAGAGGGGCAGG 58.387 57.895 0.00 0.00 0.00 4.85
693 696 1.148048 GATCTTCAGAGGGGCAGGC 59.852 63.158 0.00 0.00 0.00 4.85
694 697 2.657102 GATCTTCAGAGGGGCAGGCG 62.657 65.000 0.00 0.00 0.00 5.52
722 725 1.352083 TTAGAGCTCAACTGTGGCCT 58.648 50.000 17.77 0.00 0.00 5.19
811 814 2.682594 CTCCTACCTGATCACATCCCA 58.317 52.381 0.00 0.00 0.00 4.37
986 992 1.360393 TGGGCACAAGGAGGAGGTTT 61.360 55.000 0.00 0.00 0.00 3.27
1070 1076 1.521450 AAGAAGACGTCGCCGAGGAA 61.521 55.000 14.36 0.00 37.88 3.36
1206 1212 5.121142 CCATTTGTCAAATCCATCTTGTTGC 59.879 40.000 7.87 0.00 0.00 4.17
1240 1248 5.345702 CCTGTAATGCATGTTGAATTCTGG 58.654 41.667 0.00 0.00 26.69 3.86
1258 1266 4.081406 TCTGGTAATAATGCATGATGGGC 58.919 43.478 0.00 0.00 0.00 5.36
1313 1321 4.389890 TGCAGCAGACTGTTTGAATTTT 57.610 36.364 3.99 0.00 46.30 1.82
1363 1372 7.231317 TCAAATAAGCACAAAATGGAGTTCTCT 59.769 33.333 0.00 0.00 0.00 3.10
1423 1435 1.750778 ACATGGGCAATCATCCGAAAC 59.249 47.619 0.00 0.00 0.00 2.78
1629 1641 6.971184 CCAATGACAAACATTCTTCAGATAGC 59.029 38.462 0.00 0.00 46.01 2.97
1654 1666 5.578727 CCTACTGACTTGTAACAATCTGCTC 59.421 44.000 0.00 0.00 0.00 4.26
1658 1670 6.072838 ACTGACTTGTAACAATCTGCTCATTG 60.073 38.462 6.64 6.64 39.35 2.82
1735 1749 1.923356 ATGGATTTCAAGGCAACCGT 58.077 45.000 0.00 0.00 37.17 4.83
1822 1836 0.529337 ATTGCGCAGACGGAGATCAG 60.529 55.000 11.31 0.00 42.06 2.90
1850 1864 0.822164 GGTGTACGAGTACATGGCCT 59.178 55.000 17.64 0.00 46.36 5.19
1867 1881 2.619074 GGCCTTAGGTTCACTTGCAGAT 60.619 50.000 0.00 0.00 0.00 2.90
1976 1990 8.704234 ACGAAAATCTAGATTCTCATATTTCGC 58.296 33.333 28.81 8.32 35.88 4.70
1977 1991 8.703336 CGAAAATCTAGATTCTCATATTTCGCA 58.297 33.333 22.92 0.00 30.06 5.10
2097 2111 7.984002 TTTTGCGGACATGTGAAATATATTG 57.016 32.000 1.15 0.00 0.00 1.90
2199 2213 4.123506 TGAACTGTTGTTGTCGCAGATAA 58.876 39.130 0.00 0.00 35.93 1.75
2247 2261 6.328672 AGTTGGCATAGAAGGATGAAGATAGT 59.671 38.462 0.00 0.00 0.00 2.12
2401 2415 2.036256 CTTGGGCCTGTTGGGGAG 59.964 66.667 4.53 0.00 35.12 4.30
2534 2548 4.220821 TCCTACTTGAGTTGATCACAGGAC 59.779 45.833 0.00 0.00 36.44 3.85
2552 2566 2.673368 GGACGAAAAGCTGTCGATTCAT 59.327 45.455 22.82 3.91 41.02 2.57
2683 2731 5.618640 GCTTGCGACAAGATTTCTTTCAGAT 60.619 40.000 19.38 0.00 33.11 2.90
2799 2847 6.264518 GGTGAATACCCAGAAAAAGACTTGAA 59.735 38.462 0.00 0.00 41.36 2.69
2917 2965 2.032528 CCCGCTGGCTGTGAAGAA 59.967 61.111 6.50 0.00 0.00 2.52
2928 2976 5.305585 TGGCTGTGAAGAAAAACCTAGTAG 58.694 41.667 0.00 0.00 0.00 2.57
3141 3189 4.020307 CAGGGTGTAAAAAGCCCATGAAAT 60.020 41.667 0.00 0.00 44.69 2.17
3174 3222 6.886178 AAGTATTTTAGGCTCCCTTGACTA 57.114 37.500 0.00 0.00 34.61 2.59
3405 3464 9.442047 AGAACCAGATACAAGTAAAAGATTGAG 57.558 33.333 0.00 0.00 0.00 3.02
3431 3490 7.545265 GCTTTATTTGCAAGAATGTTGGACATA 59.455 33.333 0.00 0.00 37.97 2.29
3470 3529 7.937942 AGAAGGATTGGATAGAACATCATCAAG 59.062 37.037 0.00 0.00 0.00 3.02
3492 3551 3.366679 GCATTGAACATCAGGGACAGTTG 60.367 47.826 0.00 0.00 0.00 3.16
3506 3565 5.546499 AGGGACAGTTGACTAATGGTCTAAA 59.454 40.000 0.00 0.00 44.74 1.85
3523 3582 1.661463 AAATCCTGCTCACCTCCTCA 58.339 50.000 0.00 0.00 0.00 3.86
3532 3591 3.006967 TGCTCACCTCCTCAAGTTAGAAC 59.993 47.826 0.00 0.00 0.00 3.01
3542 3601 4.153117 CCTCAAGTTAGAACATGCACTGAC 59.847 45.833 0.00 0.00 0.00 3.51
3543 3602 4.702831 TCAAGTTAGAACATGCACTGACA 58.297 39.130 13.88 0.00 0.00 3.58
3579 3638 8.700051 CCAGAAGAATAATCTCAGTCCTCTTTA 58.300 37.037 0.00 0.00 33.77 1.85
3591 3650 2.737252 GTCCTCTTTAAACAGCTCACGG 59.263 50.000 0.00 0.00 0.00 4.94
3624 3683 6.547880 TCATTCTTCTGATCTCACTAGTACCC 59.452 42.308 0.00 0.00 0.00 3.69
3627 3686 1.609555 CTGATCTCACTAGTACCCGCC 59.390 57.143 0.00 0.00 0.00 6.13
3636 3695 1.111116 TAGTACCCGCCCCAATCTCG 61.111 60.000 0.00 0.00 0.00 4.04
3651 3710 4.161333 CAATCTCGAACAGTTTTGCATCC 58.839 43.478 0.00 0.00 0.00 3.51
3722 3781 1.005805 ACACTGGATTGCCTGCCATAA 59.994 47.619 0.00 0.00 36.65 1.90
3726 3785 0.106015 GGATTGCCTGCCATAAGGGT 60.106 55.000 0.00 0.00 37.84 4.34
3775 3840 2.246719 AGAACTGACTGCAACTCACC 57.753 50.000 0.00 0.00 0.00 4.02
3827 3892 7.571025 AGTTAGTAAGAACTTTGTCCAAGGAA 58.429 34.615 0.00 0.00 36.19 3.36
3850 3915 9.185680 GGAAGATAAAGTAGGAGATCTAGGATC 57.814 40.741 0.00 0.00 0.00 3.36
4113 4184 8.908786 TTAGATCAAGATGAAGTCAGTTGTTT 57.091 30.769 0.00 0.00 0.00 2.83
4114 4185 7.814264 AGATCAAGATGAAGTCAGTTGTTTT 57.186 32.000 0.00 0.00 0.00 2.43
4115 4186 8.908786 AGATCAAGATGAAGTCAGTTGTTTTA 57.091 30.769 0.00 0.00 0.00 1.52
4116 4187 9.512588 AGATCAAGATGAAGTCAGTTGTTTTAT 57.487 29.630 0.00 0.00 0.00 1.40
4122 4193 9.736023 AGATGAAGTCAGTTGTTTTATTTTGTC 57.264 29.630 0.00 0.00 0.00 3.18
4123 4194 9.736023 GATGAAGTCAGTTGTTTTATTTTGTCT 57.264 29.630 0.00 0.00 0.00 3.41
4125 4196 9.352784 TGAAGTCAGTTGTTTTATTTTGTCTTG 57.647 29.630 0.00 0.00 0.00 3.02
4126 4197 9.567848 GAAGTCAGTTGTTTTATTTTGTCTTGA 57.432 29.630 0.00 0.00 0.00 3.02
4127 4198 9.921637 AAGTCAGTTGTTTTATTTTGTCTTGAA 57.078 25.926 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.087892 CAGAGGCCGGTGACCCTG 62.088 72.222 1.90 2.22 0.00 4.45
7 8 2.064581 ATACCAGAGGCCGGTGACC 61.065 63.158 10.81 0.00 37.33 4.02
8 9 1.144057 CATACCAGAGGCCGGTGAC 59.856 63.158 10.81 0.00 37.33 3.67
9 10 2.731571 GCATACCAGAGGCCGGTGA 61.732 63.158 10.81 0.00 37.33 4.02
10 11 2.203070 GCATACCAGAGGCCGGTG 60.203 66.667 10.81 5.77 37.33 4.94
11 12 3.480133 GGCATACCAGAGGCCGGT 61.480 66.667 1.90 6.05 46.91 5.28
15 16 1.751563 GAGGAGGCATACCAGAGGC 59.248 63.158 0.00 0.00 39.06 4.70
16 17 0.757188 ACGAGGAGGCATACCAGAGG 60.757 60.000 0.00 0.00 39.06 3.69
17 18 0.671251 GACGAGGAGGCATACCAGAG 59.329 60.000 0.00 0.00 39.06 3.35
18 19 0.259065 AGACGAGGAGGCATACCAGA 59.741 55.000 0.00 0.00 39.06 3.86
19 20 0.671251 GAGACGAGGAGGCATACCAG 59.329 60.000 0.00 0.00 39.06 4.00
20 21 0.755698 GGAGACGAGGAGGCATACCA 60.756 60.000 0.00 0.00 39.06 3.25
21 22 0.755698 TGGAGACGAGGAGGCATACC 60.756 60.000 0.00 0.00 0.00 2.73
22 23 0.386113 GTGGAGACGAGGAGGCATAC 59.614 60.000 0.00 0.00 0.00 2.39
23 24 0.755698 GGTGGAGACGAGGAGGCATA 60.756 60.000 0.00 0.00 0.00 3.14
24 25 2.060980 GGTGGAGACGAGGAGGCAT 61.061 63.158 0.00 0.00 0.00 4.40
25 26 2.680352 GGTGGAGACGAGGAGGCA 60.680 66.667 0.00 0.00 0.00 4.75
26 27 1.985116 AAGGTGGAGACGAGGAGGC 60.985 63.158 0.00 0.00 0.00 4.70
27 28 0.900647 ACAAGGTGGAGACGAGGAGG 60.901 60.000 0.00 0.00 0.00 4.30
28 29 0.528470 GACAAGGTGGAGACGAGGAG 59.472 60.000 0.00 0.00 0.00 3.69
29 30 0.178973 TGACAAGGTGGAGACGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
30 31 0.038159 GTGACAAGGTGGAGACGAGG 60.038 60.000 0.00 0.00 0.00 4.63
31 32 0.962489 AGTGACAAGGTGGAGACGAG 59.038 55.000 0.00 0.00 0.00 4.18
32 33 2.160205 CTAGTGACAAGGTGGAGACGA 58.840 52.381 0.00 0.00 0.00 4.20
33 34 1.202582 CCTAGTGACAAGGTGGAGACG 59.797 57.143 0.00 0.00 0.00 4.18
34 35 2.494073 CTCCTAGTGACAAGGTGGAGAC 59.506 54.545 0.00 0.00 42.48 3.36
35 36 2.808919 CTCCTAGTGACAAGGTGGAGA 58.191 52.381 0.00 0.00 42.48 3.71
36 37 1.205893 GCTCCTAGTGACAAGGTGGAG 59.794 57.143 0.00 0.00 42.68 3.86
37 38 1.203187 AGCTCCTAGTGACAAGGTGGA 60.203 52.381 0.00 0.00 35.48 4.02
38 39 1.205893 GAGCTCCTAGTGACAAGGTGG 59.794 57.143 0.87 0.00 35.48 4.61
39 40 1.205893 GGAGCTCCTAGTGACAAGGTG 59.794 57.143 26.25 0.00 35.48 4.00
40 41 1.562783 GGAGCTCCTAGTGACAAGGT 58.437 55.000 26.25 0.00 35.48 3.50
41 42 0.457851 CGGAGCTCCTAGTGACAAGG 59.542 60.000 29.73 6.88 35.26 3.61
42 43 0.457851 CCGGAGCTCCTAGTGACAAG 59.542 60.000 29.73 11.08 0.00 3.16
43 44 1.605058 GCCGGAGCTCCTAGTGACAA 61.605 60.000 29.73 0.00 35.50 3.18
44 45 2.052690 GCCGGAGCTCCTAGTGACA 61.053 63.158 29.73 0.00 35.50 3.58
45 46 2.809010 GCCGGAGCTCCTAGTGAC 59.191 66.667 29.73 9.21 35.50 3.67
46 47 2.829003 CGCCGGAGCTCCTAGTGA 60.829 66.667 29.73 0.00 36.60 3.41
47 48 2.829003 TCGCCGGAGCTCCTAGTG 60.829 66.667 29.73 24.98 36.60 2.74
48 49 2.517402 CTCGCCGGAGCTCCTAGT 60.517 66.667 29.73 0.00 36.60 2.57
56 57 3.597728 GGTAGGAGCTCGCCGGAG 61.598 72.222 5.05 0.00 43.46 4.63
57 58 4.435970 TGGTAGGAGCTCGCCGGA 62.436 66.667 5.05 0.00 0.00 5.14
58 59 3.905678 CTGGTAGGAGCTCGCCGG 61.906 72.222 7.83 10.93 0.00 6.13
59 60 4.577246 GCTGGTAGGAGCTCGCCG 62.577 72.222 7.83 7.62 35.95 6.46
60 61 3.438017 CTGCTGGTAGGAGCTCGCC 62.438 68.421 7.83 10.40 39.90 5.54
61 62 2.105930 CTGCTGGTAGGAGCTCGC 59.894 66.667 7.83 4.80 39.90 5.03
66 67 1.135915 CACTACTGCTGCTGGTAGGAG 59.864 57.143 24.89 13.98 43.15 3.69
67 68 1.186200 CACTACTGCTGCTGGTAGGA 58.814 55.000 24.89 4.43 39.53 2.94
68 69 0.176680 CCACTACTGCTGCTGGTAGG 59.823 60.000 24.89 17.65 39.53 3.18
69 70 1.135915 CTCCACTACTGCTGCTGGTAG 59.864 57.143 21.99 21.99 40.62 3.18
70 71 1.186200 CTCCACTACTGCTGCTGGTA 58.814 55.000 11.29 8.33 0.00 3.25
71 72 1.548357 CCTCCACTACTGCTGCTGGT 61.548 60.000 11.29 7.63 0.00 4.00
72 73 1.220206 CCTCCACTACTGCTGCTGG 59.780 63.158 11.29 5.06 0.00 4.85
73 74 1.220206 CCCTCCACTACTGCTGCTG 59.780 63.158 4.89 4.89 0.00 4.41
74 75 1.992277 CCCCTCCACTACTGCTGCT 60.992 63.158 0.00 0.00 0.00 4.24
75 76 2.586792 CCCCTCCACTACTGCTGC 59.413 66.667 0.00 0.00 0.00 5.25
76 77 3.313874 CCCCCTCCACTACTGCTG 58.686 66.667 0.00 0.00 0.00 4.41
90 91 0.753111 CTATGCCACTTCAAGCCCCC 60.753 60.000 0.00 0.00 0.00 5.40
91 92 0.753111 CCTATGCCACTTCAAGCCCC 60.753 60.000 0.00 0.00 0.00 5.80
92 93 0.753111 CCCTATGCCACTTCAAGCCC 60.753 60.000 0.00 0.00 0.00 5.19
93 94 1.387295 GCCCTATGCCACTTCAAGCC 61.387 60.000 0.00 0.00 0.00 4.35
94 95 1.718757 CGCCCTATGCCACTTCAAGC 61.719 60.000 0.00 0.00 36.24 4.01
95 96 1.097547 CCGCCCTATGCCACTTCAAG 61.098 60.000 0.00 0.00 36.24 3.02
96 97 1.077787 CCGCCCTATGCCACTTCAA 60.078 57.895 0.00 0.00 36.24 2.69
97 98 2.297895 ACCGCCCTATGCCACTTCA 61.298 57.895 0.00 0.00 36.24 3.02
98 99 1.819632 CACCGCCCTATGCCACTTC 60.820 63.158 0.00 0.00 36.24 3.01
99 100 2.272146 CACCGCCCTATGCCACTT 59.728 61.111 0.00 0.00 36.24 3.16
100 101 3.797353 CCACCGCCCTATGCCACT 61.797 66.667 0.00 0.00 36.24 4.00
101 102 4.109675 ACCACCGCCCTATGCCAC 62.110 66.667 0.00 0.00 36.24 5.01
102 103 3.792736 GACCACCGCCCTATGCCA 61.793 66.667 0.00 0.00 36.24 4.92
103 104 4.910585 CGACCACCGCCCTATGCC 62.911 72.222 0.00 0.00 36.24 4.40
104 105 4.910585 CCGACCACCGCCCTATGC 62.911 72.222 0.00 0.00 36.84 3.14
105 106 3.151710 TCCGACCACCGCCCTATG 61.152 66.667 0.00 0.00 36.84 2.23
106 107 3.152400 GTCCGACCACCGCCCTAT 61.152 66.667 0.00 0.00 36.84 2.57
114 115 4.595538 TGTGCCACGTCCGACCAC 62.596 66.667 0.00 0.00 0.00 4.16
115 116 4.293648 CTGTGCCACGTCCGACCA 62.294 66.667 0.00 0.00 0.00 4.02
117 118 3.986006 TCCTGTGCCACGTCCGAC 61.986 66.667 0.00 0.00 0.00 4.79
118 119 3.986006 GTCCTGTGCCACGTCCGA 61.986 66.667 0.00 0.00 0.00 4.55
120 121 3.509137 TTCGTCCTGTGCCACGTCC 62.509 63.158 0.00 0.00 37.30 4.79
121 122 2.022129 CTTCGTCCTGTGCCACGTC 61.022 63.158 0.00 0.00 37.30 4.34
122 123 2.029073 CTTCGTCCTGTGCCACGT 59.971 61.111 0.00 0.00 37.30 4.49
123 124 2.738521 CCTTCGTCCTGTGCCACG 60.739 66.667 0.00 0.00 37.36 4.94
124 125 3.050275 GCCTTCGTCCTGTGCCAC 61.050 66.667 0.00 0.00 0.00 5.01
125 126 4.680237 CGCCTTCGTCCTGTGCCA 62.680 66.667 0.00 0.00 0.00 4.92
135 136 3.950794 TTGCTAGCCCACGCCTTCG 62.951 63.158 13.29 0.00 42.43 3.79
136 137 1.452108 ATTGCTAGCCCACGCCTTC 60.452 57.895 13.29 0.00 34.57 3.46
137 138 1.750399 CATTGCTAGCCCACGCCTT 60.750 57.895 13.29 0.00 34.57 4.35
138 139 2.124570 CATTGCTAGCCCACGCCT 60.125 61.111 13.29 0.00 34.57 5.52
139 140 2.438434 ACATTGCTAGCCCACGCC 60.438 61.111 13.29 0.00 34.57 5.68
140 141 2.764314 CCACATTGCTAGCCCACGC 61.764 63.158 13.29 0.00 0.00 5.34
141 142 1.369091 GACCACATTGCTAGCCCACG 61.369 60.000 13.29 0.36 0.00 4.94
142 143 1.369091 CGACCACATTGCTAGCCCAC 61.369 60.000 13.29 0.00 0.00 4.61
143 144 1.078497 CGACCACATTGCTAGCCCA 60.078 57.895 13.29 0.00 0.00 5.36
144 145 1.819632 CCGACCACATTGCTAGCCC 60.820 63.158 13.29 0.00 0.00 5.19
145 146 2.472909 GCCGACCACATTGCTAGCC 61.473 63.158 13.29 0.00 0.00 3.93
146 147 1.709147 CTGCCGACCACATTGCTAGC 61.709 60.000 8.10 8.10 0.00 3.42
147 148 1.709147 GCTGCCGACCACATTGCTAG 61.709 60.000 0.00 0.00 0.00 3.42
148 149 1.745115 GCTGCCGACCACATTGCTA 60.745 57.895 0.00 0.00 0.00 3.49
149 150 3.058160 GCTGCCGACCACATTGCT 61.058 61.111 0.00 0.00 0.00 3.91
150 151 4.120331 GGCTGCCGACCACATTGC 62.120 66.667 1.35 0.00 0.00 3.56
151 152 2.048023 ATGGCTGCCGACCACATTG 61.048 57.895 14.98 0.00 40.82 2.82
152 153 2.048023 CATGGCTGCCGACCACATT 61.048 57.895 14.98 0.00 40.82 2.71
153 154 2.438975 CATGGCTGCCGACCACAT 60.439 61.111 14.98 0.00 40.82 3.21
154 155 4.720902 CCATGGCTGCCGACCACA 62.721 66.667 14.98 0.00 40.82 4.17
161 162 2.965716 ATAGAACCGCCATGGCTGCC 62.966 60.000 33.07 21.25 43.94 4.85
162 163 1.526917 ATAGAACCGCCATGGCTGC 60.527 57.895 33.07 15.54 43.94 5.25
163 164 1.168407 CCATAGAACCGCCATGGCTG 61.168 60.000 33.07 28.97 43.94 4.85
164 165 1.149174 CCATAGAACCGCCATGGCT 59.851 57.895 33.07 16.32 43.94 4.75
165 166 1.152963 ACCATAGAACCGCCATGGC 60.153 57.895 27.67 27.67 42.54 4.40
166 167 0.107214 ACACCATAGAACCGCCATGG 60.107 55.000 7.63 7.63 44.04 3.66
167 168 1.670811 GAACACCATAGAACCGCCATG 59.329 52.381 0.00 0.00 0.00 3.66
168 169 1.559682 AGAACACCATAGAACCGCCAT 59.440 47.619 0.00 0.00 0.00 4.40
169 170 0.981183 AGAACACCATAGAACCGCCA 59.019 50.000 0.00 0.00 0.00 5.69
170 171 1.737793 CAAGAACACCATAGAACCGCC 59.262 52.381 0.00 0.00 0.00 6.13
171 172 2.415512 GTCAAGAACACCATAGAACCGC 59.584 50.000 0.00 0.00 0.00 5.68
172 173 2.666508 CGTCAAGAACACCATAGAACCG 59.333 50.000 0.00 0.00 0.00 4.44
173 174 3.921677 TCGTCAAGAACACCATAGAACC 58.078 45.455 0.00 0.00 0.00 3.62
174 175 3.368236 GCTCGTCAAGAACACCATAGAAC 59.632 47.826 0.00 0.00 0.00 3.01
175 176 3.006430 TGCTCGTCAAGAACACCATAGAA 59.994 43.478 0.00 0.00 0.00 2.10
176 177 2.560981 TGCTCGTCAAGAACACCATAGA 59.439 45.455 0.00 0.00 0.00 1.98
177 178 2.926200 CTGCTCGTCAAGAACACCATAG 59.074 50.000 0.00 0.00 0.00 2.23
178 179 2.353704 CCTGCTCGTCAAGAACACCATA 60.354 50.000 0.00 0.00 0.00 2.74
179 180 1.609061 CCTGCTCGTCAAGAACACCAT 60.609 52.381 0.00 0.00 0.00 3.55
180 181 0.249868 CCTGCTCGTCAAGAACACCA 60.250 55.000 0.00 0.00 0.00 4.17
181 182 0.033504 TCCTGCTCGTCAAGAACACC 59.966 55.000 0.00 0.00 0.00 4.16
182 183 1.795286 CTTCCTGCTCGTCAAGAACAC 59.205 52.381 0.00 0.00 0.00 3.32
183 184 1.686587 TCTTCCTGCTCGTCAAGAACA 59.313 47.619 0.00 0.00 0.00 3.18
184 185 2.288518 ACTCTTCCTGCTCGTCAAGAAC 60.289 50.000 0.00 0.00 0.00 3.01
185 186 1.964223 ACTCTTCCTGCTCGTCAAGAA 59.036 47.619 0.00 0.00 0.00 2.52
186 187 1.270826 CACTCTTCCTGCTCGTCAAGA 59.729 52.381 0.00 0.00 0.00 3.02
187 188 1.671261 CCACTCTTCCTGCTCGTCAAG 60.671 57.143 0.00 0.00 0.00 3.02
188 189 0.318441 CCACTCTTCCTGCTCGTCAA 59.682 55.000 0.00 0.00 0.00 3.18
189 190 0.539669 TCCACTCTTCCTGCTCGTCA 60.540 55.000 0.00 0.00 0.00 4.35
190 191 0.172352 CTCCACTCTTCCTGCTCGTC 59.828 60.000 0.00 0.00 0.00 4.20
191 192 0.251386 TCTCCACTCTTCCTGCTCGT 60.251 55.000 0.00 0.00 0.00 4.18
192 193 0.891373 TTCTCCACTCTTCCTGCTCG 59.109 55.000 0.00 0.00 0.00 5.03
193 194 2.175202 TCTTCTCCACTCTTCCTGCTC 58.825 52.381 0.00 0.00 0.00 4.26
194 195 2.317371 TCTTCTCCACTCTTCCTGCT 57.683 50.000 0.00 0.00 0.00 4.24
195 196 2.564947 TCTTCTTCTCCACTCTTCCTGC 59.435 50.000 0.00 0.00 0.00 4.85
196 197 4.322650 CCTTCTTCTTCTCCACTCTTCCTG 60.323 50.000 0.00 0.00 0.00 3.86
197 198 3.837731 CCTTCTTCTTCTCCACTCTTCCT 59.162 47.826 0.00 0.00 0.00 3.36
198 199 3.835395 TCCTTCTTCTTCTCCACTCTTCC 59.165 47.826 0.00 0.00 0.00 3.46
199 200 5.476091 TTCCTTCTTCTTCTCCACTCTTC 57.524 43.478 0.00 0.00 0.00 2.87
200 201 4.285775 CCTTCCTTCTTCTTCTCCACTCTT 59.714 45.833 0.00 0.00 0.00 2.85
201 202 3.837731 CCTTCCTTCTTCTTCTCCACTCT 59.162 47.826 0.00 0.00 0.00 3.24
202 203 3.618752 GCCTTCCTTCTTCTTCTCCACTC 60.619 52.174 0.00 0.00 0.00 3.51
203 204 2.304470 GCCTTCCTTCTTCTTCTCCACT 59.696 50.000 0.00 0.00 0.00 4.00
204 205 2.039084 TGCCTTCCTTCTTCTTCTCCAC 59.961 50.000 0.00 0.00 0.00 4.02
205 206 2.304180 CTGCCTTCCTTCTTCTTCTCCA 59.696 50.000 0.00 0.00 0.00 3.86
206 207 2.569404 TCTGCCTTCCTTCTTCTTCTCC 59.431 50.000 0.00 0.00 0.00 3.71
207 208 3.513515 TCTCTGCCTTCCTTCTTCTTCTC 59.486 47.826 0.00 0.00 0.00 2.87
208 209 3.515104 CTCTCTGCCTTCCTTCTTCTTCT 59.485 47.826 0.00 0.00 0.00 2.85
209 210 3.369366 CCTCTCTGCCTTCCTTCTTCTTC 60.369 52.174 0.00 0.00 0.00 2.87
210 211 2.571202 CCTCTCTGCCTTCCTTCTTCTT 59.429 50.000 0.00 0.00 0.00 2.52
211 212 2.187100 CCTCTCTGCCTTCCTTCTTCT 58.813 52.381 0.00 0.00 0.00 2.85
212 213 2.168313 CTCCTCTCTGCCTTCCTTCTTC 59.832 54.545 0.00 0.00 0.00 2.87
213 214 2.187100 CTCCTCTCTGCCTTCCTTCTT 58.813 52.381 0.00 0.00 0.00 2.52
214 215 1.360852 TCTCCTCTCTGCCTTCCTTCT 59.639 52.381 0.00 0.00 0.00 2.85
215 216 1.480545 GTCTCCTCTCTGCCTTCCTTC 59.519 57.143 0.00 0.00 0.00 3.46
216 217 1.203237 TGTCTCCTCTCTGCCTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
217 218 0.411452 TGTCTCCTCTCTGCCTTCCT 59.589 55.000 0.00 0.00 0.00 3.36
218 219 1.138661 CATGTCTCCTCTCTGCCTTCC 59.861 57.143 0.00 0.00 0.00 3.46
219 220 1.830477 ACATGTCTCCTCTCTGCCTTC 59.170 52.381 0.00 0.00 0.00 3.46
220 221 1.554160 CACATGTCTCCTCTCTGCCTT 59.446 52.381 0.00 0.00 0.00 4.35
221 222 1.193323 CACATGTCTCCTCTCTGCCT 58.807 55.000 0.00 0.00 0.00 4.75
222 223 0.177604 CCACATGTCTCCTCTCTGCC 59.822 60.000 0.00 0.00 0.00 4.85
223 224 0.461693 GCCACATGTCTCCTCTCTGC 60.462 60.000 0.00 0.00 0.00 4.26
224 225 0.900421 TGCCACATGTCTCCTCTCTG 59.100 55.000 0.00 0.00 0.00 3.35
225 226 1.485480 CATGCCACATGTCTCCTCTCT 59.515 52.381 0.00 0.00 0.00 3.10
226 227 1.209019 ACATGCCACATGTCTCCTCTC 59.791 52.381 7.38 0.00 0.00 3.20
227 228 1.065636 CACATGCCACATGTCTCCTCT 60.066 52.381 10.16 0.00 0.00 3.69
228 229 1.376543 CACATGCCACATGTCTCCTC 58.623 55.000 10.16 0.00 0.00 3.71
229 230 0.034767 CCACATGCCACATGTCTCCT 60.035 55.000 10.16 0.00 0.00 3.69
230 231 1.033746 CCCACATGCCACATGTCTCC 61.034 60.000 10.16 0.00 0.00 3.71
231 232 1.660560 GCCCACATGCCACATGTCTC 61.661 60.000 10.16 0.05 0.00 3.36
232 233 1.679977 GCCCACATGCCACATGTCT 60.680 57.895 10.16 0.00 0.00 3.41
233 234 2.887360 GCCCACATGCCACATGTC 59.113 61.111 10.16 0.00 0.00 3.06
246 247 1.136961 TAACTGACATGTGGGGCCCA 61.137 55.000 24.76 24.76 0.00 5.36
247 248 0.039035 TTAACTGACATGTGGGGCCC 59.961 55.000 18.17 18.17 0.00 5.80
248 249 1.173913 GTTAACTGACATGTGGGGCC 58.826 55.000 1.15 0.00 0.00 5.80
249 250 0.802494 CGTTAACTGACATGTGGGGC 59.198 55.000 1.15 0.00 0.00 5.80
250 251 1.271163 ACCGTTAACTGACATGTGGGG 60.271 52.381 1.15 0.00 0.00 4.96
251 252 2.073816 GACCGTTAACTGACATGTGGG 58.926 52.381 1.15 0.00 0.00 4.61
252 253 2.761559 TGACCGTTAACTGACATGTGG 58.238 47.619 1.15 0.00 0.00 4.17
253 254 4.272504 AGTTTGACCGTTAACTGACATGTG 59.727 41.667 1.15 0.00 33.55 3.21
254 255 4.448210 AGTTTGACCGTTAACTGACATGT 58.552 39.130 0.00 0.00 33.55 3.21
255 256 6.533819 TTAGTTTGACCGTTAACTGACATG 57.466 37.500 3.84 0.00 36.16 3.21
256 257 6.348213 GCATTAGTTTGACCGTTAACTGACAT 60.348 38.462 3.84 0.00 36.16 3.06
257 258 5.049954 GCATTAGTTTGACCGTTAACTGACA 60.050 40.000 3.84 1.06 36.16 3.58
258 259 5.178809 AGCATTAGTTTGACCGTTAACTGAC 59.821 40.000 3.84 0.00 36.16 3.51
259 260 5.302360 AGCATTAGTTTGACCGTTAACTGA 58.698 37.500 3.84 3.49 36.16 3.41
260 261 5.607119 AGCATTAGTTTGACCGTTAACTG 57.393 39.130 3.71 0.00 36.16 3.16
261 262 5.107220 CGAAGCATTAGTTTGACCGTTAACT 60.107 40.000 3.71 0.00 38.16 2.24
262 263 5.077424 CGAAGCATTAGTTTGACCGTTAAC 58.923 41.667 0.00 0.00 0.00 2.01
263 264 4.751098 ACGAAGCATTAGTTTGACCGTTAA 59.249 37.500 0.00 0.00 25.70 2.01
264 265 4.309099 ACGAAGCATTAGTTTGACCGTTA 58.691 39.130 0.00 0.00 25.70 3.18
265 266 3.135994 ACGAAGCATTAGTTTGACCGTT 58.864 40.909 0.00 0.00 25.70 4.44
266 267 2.762745 ACGAAGCATTAGTTTGACCGT 58.237 42.857 0.00 0.00 25.70 4.83
267 268 3.806316 AACGAAGCATTAGTTTGACCG 57.194 42.857 0.00 0.00 41.15 4.79
273 274 4.454504 CCACACCTAAACGAAGCATTAGTT 59.545 41.667 0.00 0.00 45.90 2.24
274 275 4.000988 CCACACCTAAACGAAGCATTAGT 58.999 43.478 0.00 0.00 34.62 2.24
275 276 3.374058 CCCACACCTAAACGAAGCATTAG 59.626 47.826 0.00 0.00 32.29 1.73
276 277 3.340034 CCCACACCTAAACGAAGCATTA 58.660 45.455 0.00 0.00 0.00 1.90
277 278 2.159382 CCCACACCTAAACGAAGCATT 58.841 47.619 0.00 0.00 0.00 3.56
278 279 1.821216 CCCACACCTAAACGAAGCAT 58.179 50.000 0.00 0.00 0.00 3.79
279 280 0.887387 GCCCACACCTAAACGAAGCA 60.887 55.000 0.00 0.00 0.00 3.91
280 281 1.583495 GGCCCACACCTAAACGAAGC 61.583 60.000 0.00 0.00 0.00 3.86
281 282 0.036306 AGGCCCACACCTAAACGAAG 59.964 55.000 0.00 0.00 38.67 3.79
282 283 0.250553 CAGGCCCACACCTAAACGAA 60.251 55.000 0.00 0.00 38.26 3.85
283 284 1.122632 TCAGGCCCACACCTAAACGA 61.123 55.000 0.00 0.00 38.26 3.85
284 285 0.953960 GTCAGGCCCACACCTAAACG 60.954 60.000 0.00 0.00 38.26 3.60
285 286 0.608308 GGTCAGGCCCACACCTAAAC 60.608 60.000 0.00 0.00 38.26 2.01
286 287 0.770557 AGGTCAGGCCCACACCTAAA 60.771 55.000 14.89 0.00 38.86 1.85
287 288 1.151899 AGGTCAGGCCCACACCTAA 60.152 57.895 14.89 0.00 38.86 2.69
288 289 1.918293 CAGGTCAGGCCCACACCTA 60.918 63.158 15.83 0.00 38.57 3.08
289 290 3.252284 CAGGTCAGGCCCACACCT 61.252 66.667 11.39 11.39 41.52 4.00
297 298 1.312815 GTGATTATGGCAGGTCAGGC 58.687 55.000 0.00 0.00 0.00 4.85
298 299 1.138859 TCGTGATTATGGCAGGTCAGG 59.861 52.381 10.91 10.91 0.00 3.86
299 300 2.602257 TCGTGATTATGGCAGGTCAG 57.398 50.000 0.00 0.00 0.00 3.51
300 301 2.433970 TGATCGTGATTATGGCAGGTCA 59.566 45.455 0.00 0.00 0.00 4.02
301 302 3.111853 TGATCGTGATTATGGCAGGTC 57.888 47.619 0.00 0.00 0.00 3.85
302 303 3.558931 TTGATCGTGATTATGGCAGGT 57.441 42.857 0.00 0.00 0.00 4.00
303 304 4.516321 TCAATTGATCGTGATTATGGCAGG 59.484 41.667 3.38 0.00 0.00 4.85
304 305 5.678132 TCAATTGATCGTGATTATGGCAG 57.322 39.130 3.38 0.00 0.00 4.85
305 306 7.573656 GCTTATCAATTGATCGTGATTATGGCA 60.574 37.037 23.95 0.00 36.00 4.92
306 307 6.744537 GCTTATCAATTGATCGTGATTATGGC 59.255 38.462 23.95 8.88 36.00 4.40
307 308 7.747799 GTGCTTATCAATTGATCGTGATTATGG 59.252 37.037 23.95 3.46 36.00 2.74
308 309 8.501580 AGTGCTTATCAATTGATCGTGATTATG 58.498 33.333 23.95 8.55 36.00 1.90
309 310 8.613060 AGTGCTTATCAATTGATCGTGATTAT 57.387 30.769 23.95 0.87 36.00 1.28
310 311 8.437360 AAGTGCTTATCAATTGATCGTGATTA 57.563 30.769 23.95 2.42 36.00 1.75
311 312 6.932356 AGTGCTTATCAATTGATCGTGATT 57.068 33.333 23.95 2.39 36.00 2.57
312 313 6.932356 AAGTGCTTATCAATTGATCGTGAT 57.068 33.333 23.95 3.15 38.10 3.06
320 321 6.311935 CCAAATCACCAAGTGCTTATCAATTG 59.688 38.462 0.00 0.00 46.85 2.32
321 322 6.400568 CCAAATCACCAAGTGCTTATCAATT 58.599 36.000 0.00 0.00 32.54 2.32
322 323 5.105228 CCCAAATCACCAAGTGCTTATCAAT 60.105 40.000 0.00 0.00 32.98 2.57
323 324 4.220382 CCCAAATCACCAAGTGCTTATCAA 59.780 41.667 0.00 0.00 32.98 2.57
324 325 3.763360 CCCAAATCACCAAGTGCTTATCA 59.237 43.478 0.00 0.00 32.98 2.15
325 326 3.763897 ACCCAAATCACCAAGTGCTTATC 59.236 43.478 0.00 0.00 32.98 1.75
326 327 3.778265 ACCCAAATCACCAAGTGCTTAT 58.222 40.909 0.00 0.00 32.98 1.73
327 328 3.237268 ACCCAAATCACCAAGTGCTTA 57.763 42.857 0.00 0.00 32.98 3.09
328 329 2.086610 ACCCAAATCACCAAGTGCTT 57.913 45.000 0.00 0.00 32.98 3.91
329 330 2.086610 AACCCAAATCACCAAGTGCT 57.913 45.000 0.00 0.00 32.98 4.40
330 331 2.908688 AAACCCAAATCACCAAGTGC 57.091 45.000 0.00 0.00 32.98 4.40
349 350 2.036604 GGATGGTCGGCTTTTCCAAAAA 59.963 45.455 0.00 0.00 34.80 1.94
350 351 1.616374 GGATGGTCGGCTTTTCCAAAA 59.384 47.619 0.00 0.00 34.80 2.44
351 352 1.253100 GGATGGTCGGCTTTTCCAAA 58.747 50.000 0.00 0.00 34.80 3.28
352 353 0.111446 TGGATGGTCGGCTTTTCCAA 59.889 50.000 4.09 0.00 33.66 3.53
353 354 0.331278 ATGGATGGTCGGCTTTTCCA 59.669 50.000 8.22 8.22 40.54 3.53
354 355 1.474330 AATGGATGGTCGGCTTTTCC 58.526 50.000 0.00 0.00 0.00 3.13
355 356 2.417243 CCAAATGGATGGTCGGCTTTTC 60.417 50.000 0.00 0.00 37.39 2.29
356 357 1.550072 CCAAATGGATGGTCGGCTTTT 59.450 47.619 0.00 0.00 37.39 2.27
357 358 1.185315 CCAAATGGATGGTCGGCTTT 58.815 50.000 0.00 0.00 37.39 3.51
358 359 2.886382 CCAAATGGATGGTCGGCTT 58.114 52.632 0.00 0.00 37.39 4.35
359 360 4.664062 CCAAATGGATGGTCGGCT 57.336 55.556 0.00 0.00 37.39 5.52
365 366 6.830912 TCTCAGATAACTACCAAATGGATGG 58.169 40.000 6.42 0.00 46.38 3.51
366 367 8.737168 TTTCTCAGATAACTACCAAATGGATG 57.263 34.615 6.42 0.95 38.94 3.51
367 368 9.753674 TTTTTCTCAGATAACTACCAAATGGAT 57.246 29.630 6.42 0.00 38.94 3.41
368 369 9.753674 ATTTTTCTCAGATAACTACCAAATGGA 57.246 29.630 6.42 0.00 38.94 3.41
378 379 9.908152 CCGGTTTTTAATTTTTCTCAGATAACT 57.092 29.630 0.00 0.00 0.00 2.24
379 380 9.687210 ACCGGTTTTTAATTTTTCTCAGATAAC 57.313 29.630 0.00 0.00 0.00 1.89
382 383 9.074576 ACTACCGGTTTTTAATTTTTCTCAGAT 57.925 29.630 15.04 0.00 0.00 2.90
383 384 8.454570 ACTACCGGTTTTTAATTTTTCTCAGA 57.545 30.769 15.04 0.00 0.00 3.27
384 385 9.524106 AAACTACCGGTTTTTAATTTTTCTCAG 57.476 29.630 15.04 0.00 44.77 3.35
409 410 7.957992 TTTTACAGGTTAGGGTTCTGAAAAA 57.042 32.000 0.00 0.00 33.19 1.94
410 411 9.292195 CTATTTTACAGGTTAGGGTTCTGAAAA 57.708 33.333 0.00 0.00 33.19 2.29
411 412 8.662255 TCTATTTTACAGGTTAGGGTTCTGAAA 58.338 33.333 0.00 0.00 33.19 2.69
412 413 8.209802 TCTATTTTACAGGTTAGGGTTCTGAA 57.790 34.615 0.00 0.00 33.19 3.02
413 414 7.676893 TCTCTATTTTACAGGTTAGGGTTCTGA 59.323 37.037 0.00 0.00 33.19 3.27
414 415 7.764901 GTCTCTATTTTACAGGTTAGGGTTCTG 59.235 40.741 0.00 0.00 34.91 3.02
415 416 7.363617 CGTCTCTATTTTACAGGTTAGGGTTCT 60.364 40.741 0.00 0.00 0.00 3.01
416 417 6.755607 CGTCTCTATTTTACAGGTTAGGGTTC 59.244 42.308 0.00 0.00 0.00 3.62
417 418 6.351626 CCGTCTCTATTTTACAGGTTAGGGTT 60.352 42.308 0.00 0.00 0.00 4.11
418 419 5.128335 CCGTCTCTATTTTACAGGTTAGGGT 59.872 44.000 0.00 0.00 0.00 4.34
419 420 5.361857 TCCGTCTCTATTTTACAGGTTAGGG 59.638 44.000 0.00 0.00 0.00 3.53
420 421 6.127535 TGTCCGTCTCTATTTTACAGGTTAGG 60.128 42.308 0.00 0.00 0.00 2.69
421 422 6.860080 TGTCCGTCTCTATTTTACAGGTTAG 58.140 40.000 0.00 0.00 0.00 2.34
422 423 6.839124 TGTCCGTCTCTATTTTACAGGTTA 57.161 37.500 0.00 0.00 0.00 2.85
423 424 5.733620 TGTCCGTCTCTATTTTACAGGTT 57.266 39.130 0.00 0.00 0.00 3.50
424 425 5.733620 TTGTCCGTCTCTATTTTACAGGT 57.266 39.130 0.00 0.00 0.00 4.00
433 434 9.477484 GTGTTGAAATATATTGTCCGTCTCTAT 57.523 33.333 0.00 0.00 0.00 1.98
434 435 7.646526 CGTGTTGAAATATATTGTCCGTCTCTA 59.353 37.037 0.00 0.00 0.00 2.43
435 436 6.475727 CGTGTTGAAATATATTGTCCGTCTCT 59.524 38.462 0.00 0.00 0.00 3.10
436 437 6.255020 ACGTGTTGAAATATATTGTCCGTCTC 59.745 38.462 0.00 0.00 0.00 3.36
437 438 6.103997 ACGTGTTGAAATATATTGTCCGTCT 58.896 36.000 0.00 0.00 0.00 4.18
438 439 6.035220 TGACGTGTTGAAATATATTGTCCGTC 59.965 38.462 17.33 17.33 39.93 4.79
439 440 5.870433 TGACGTGTTGAAATATATTGTCCGT 59.130 36.000 0.00 2.74 0.00 4.69
440 441 6.182634 GTGACGTGTTGAAATATATTGTCCG 58.817 40.000 0.00 0.00 0.00 4.79
441 442 7.067532 TGTGACGTGTTGAAATATATTGTCC 57.932 36.000 0.00 0.00 0.00 4.02
442 443 8.012809 TGTTGTGACGTGTTGAAATATATTGTC 58.987 33.333 0.00 1.33 0.00 3.18
443 444 7.866729 TGTTGTGACGTGTTGAAATATATTGT 58.133 30.769 0.00 0.00 0.00 2.71
444 445 8.227119 TCTGTTGTGACGTGTTGAAATATATTG 58.773 33.333 0.00 0.00 0.00 1.90
445 446 8.227791 GTCTGTTGTGACGTGTTGAAATATATT 58.772 33.333 0.00 0.00 0.00 1.28
446 447 7.602644 AGTCTGTTGTGACGTGTTGAAATATAT 59.397 33.333 0.00 0.00 41.47 0.86
447 448 6.926826 AGTCTGTTGTGACGTGTTGAAATATA 59.073 34.615 0.00 0.00 41.47 0.86
448 449 5.758296 AGTCTGTTGTGACGTGTTGAAATAT 59.242 36.000 0.00 0.00 41.47 1.28
449 450 5.113383 AGTCTGTTGTGACGTGTTGAAATA 58.887 37.500 0.00 0.00 41.47 1.40
450 451 3.938963 AGTCTGTTGTGACGTGTTGAAAT 59.061 39.130 0.00 0.00 41.47 2.17
451 452 3.331150 AGTCTGTTGTGACGTGTTGAAA 58.669 40.909 0.00 0.00 41.47 2.69
452 453 2.927477 GAGTCTGTTGTGACGTGTTGAA 59.073 45.455 0.00 0.00 41.47 2.69
453 454 2.094442 TGAGTCTGTTGTGACGTGTTGA 60.094 45.455 0.00 0.00 41.47 3.18
454 455 2.267426 TGAGTCTGTTGTGACGTGTTG 58.733 47.619 0.00 0.00 41.47 3.33
455 456 2.665649 TGAGTCTGTTGTGACGTGTT 57.334 45.000 0.00 0.00 41.47 3.32
456 457 2.665649 TTGAGTCTGTTGTGACGTGT 57.334 45.000 0.00 0.00 41.47 4.49
457 458 3.123050 TCATTGAGTCTGTTGTGACGTG 58.877 45.455 0.00 0.00 41.47 4.49
458 459 3.452755 TCATTGAGTCTGTTGTGACGT 57.547 42.857 0.00 0.00 41.47 4.34
459 460 3.363378 GCTTCATTGAGTCTGTTGTGACG 60.363 47.826 0.00 0.00 41.47 4.35
460 461 3.561310 TGCTTCATTGAGTCTGTTGTGAC 59.439 43.478 0.00 0.00 37.23 3.67
461 462 3.807553 TGCTTCATTGAGTCTGTTGTGA 58.192 40.909 0.00 0.00 0.00 3.58
462 463 4.454847 AGATGCTTCATTGAGTCTGTTGTG 59.545 41.667 2.07 0.00 0.00 3.33
463 464 4.454847 CAGATGCTTCATTGAGTCTGTTGT 59.545 41.667 2.07 0.00 0.00 3.32
464 465 4.672024 GCAGATGCTTCATTGAGTCTGTTG 60.672 45.833 15.52 3.96 36.39 3.33
465 466 3.439476 GCAGATGCTTCATTGAGTCTGTT 59.561 43.478 15.52 0.00 36.39 3.16
466 467 3.008330 GCAGATGCTTCATTGAGTCTGT 58.992 45.455 15.52 0.00 36.39 3.41
467 468 3.677190 GCAGATGCTTCATTGAGTCTG 57.323 47.619 2.07 12.34 38.21 3.51
500 501 5.771666 CCCTATGTCATATGCCACTTCAATT 59.228 40.000 0.00 0.00 0.00 2.32
529 530 7.978975 TGTTGTTGGAATAGTGGAAAGAAAAAG 59.021 33.333 0.00 0.00 0.00 2.27
530 531 7.841956 TGTTGTTGGAATAGTGGAAAGAAAAA 58.158 30.769 0.00 0.00 0.00 1.94
562 563 0.963962 AATGGCCTGCTCACTGTTTG 59.036 50.000 3.32 0.00 0.00 2.93
563 564 1.615392 GAAATGGCCTGCTCACTGTTT 59.385 47.619 3.32 0.00 0.00 2.83
566 567 1.318158 GGGAAATGGCCTGCTCACTG 61.318 60.000 3.32 0.00 0.00 3.66
589 591 1.775385 CCCCATGGTTGGTATTCCAC 58.225 55.000 11.73 0.00 44.22 4.02
591 593 0.759060 GGCCCCATGGTTGGTATTCC 60.759 60.000 11.73 0.00 41.91 3.01
592 594 0.032615 TGGCCCCATGGTTGGTATTC 60.033 55.000 11.73 0.00 41.91 1.75
593 595 0.415429 TTGGCCCCATGGTTGGTATT 59.585 50.000 11.73 0.00 41.91 1.89
596 598 2.203773 GTTGGCCCCATGGTTGGT 60.204 61.111 11.73 0.00 41.91 3.67
609 611 6.100404 TCCCTGAATTTTCTCATTTGTTGG 57.900 37.500 0.00 0.00 0.00 3.77
613 616 7.494625 CCATCATTCCCTGAATTTTCTCATTTG 59.505 37.037 0.00 0.00 37.44 2.32
635 638 2.614057 CTGGATGTAAACGCCTTCCATC 59.386 50.000 0.00 0.00 36.08 3.51
637 640 1.349688 ACTGGATGTAAACGCCTTCCA 59.650 47.619 0.00 0.00 35.53 3.53
671 674 0.911045 TGCCCCTCTGAAGATCAGCA 60.911 55.000 2.48 0.00 43.95 4.41
674 677 1.630126 GCCTGCCCCTCTGAAGATCA 61.630 60.000 0.00 0.00 0.00 2.92
688 691 3.623510 AGCTCTAAAATTAGAACGCCTGC 59.376 43.478 9.52 6.37 39.15 4.85
689 692 4.870426 TGAGCTCTAAAATTAGAACGCCTG 59.130 41.667 16.19 0.00 39.15 4.85
690 693 5.086104 TGAGCTCTAAAATTAGAACGCCT 57.914 39.130 16.19 3.02 39.15 5.52
691 694 5.351740 AGTTGAGCTCTAAAATTAGAACGCC 59.648 40.000 16.19 4.54 39.15 5.68
692 695 6.128526 ACAGTTGAGCTCTAAAATTAGAACGC 60.129 38.462 16.19 5.58 39.15 4.84
693 696 7.230222 CACAGTTGAGCTCTAAAATTAGAACG 58.770 38.462 16.19 6.66 39.15 3.95
694 697 7.522374 CCACAGTTGAGCTCTAAAATTAGAAC 58.478 38.462 16.19 7.43 39.15 3.01
722 725 7.201920 CCAAGAATAGGATCTCTCTCGGTTTTA 60.202 40.741 0.00 0.00 0.00 1.52
986 992 0.038599 ATGCATGTGCCTCTCAACCA 59.961 50.000 0.00 0.00 41.18 3.67
1070 1076 4.400251 CCTCCCCTGACCCCGTCT 62.400 72.222 0.00 0.00 33.15 4.18
1206 1212 1.406539 GCATTACAGGGACAAGCATGG 59.593 52.381 0.00 0.00 0.00 3.66
1240 1248 3.573538 TGTGGCCCATCATGCATTATTAC 59.426 43.478 0.00 0.00 0.00 1.89
1258 1266 7.256154 GGGGTCCATATTTAAATACCATTGTGG 60.256 40.741 16.21 14.90 45.02 4.17
1313 1321 4.220821 AGGATCTTAGTTTTGCTCTCGACA 59.779 41.667 0.00 0.00 0.00 4.35
1363 1372 8.836413 CAAGGTGAGTTTTCAGTATTTGTTAGA 58.164 33.333 0.00 0.00 32.98 2.10
1400 1409 2.455557 TCGGATGATTGCCCATGTTTT 58.544 42.857 0.00 0.00 0.00 2.43
1423 1435 1.002468 CAGGTTCACCGTTTGCTCTTG 60.002 52.381 0.00 0.00 42.08 3.02
1629 1641 4.631813 GCAGATTGTTACAAGTCAGTAGGG 59.368 45.833 3.63 0.00 0.00 3.53
1735 1749 3.454447 TCAAGACTTCAACCAGGAACTCA 59.546 43.478 0.00 0.00 34.60 3.41
1822 1836 1.226603 CTCGTACACCAGTAGCCGC 60.227 63.158 0.00 0.00 0.00 6.53
1850 1864 3.327757 AGGTGATCTGCAAGTGAACCTAA 59.672 43.478 6.08 0.00 38.44 2.69
2024 2038 7.993821 TTTTTAAGTTGAAAATGACGCATCA 57.006 28.000 1.66 0.00 39.83 3.07
2097 2111 4.065321 AGTGATGCTATACTGTTGCCTC 57.935 45.455 0.00 0.00 0.00 4.70
2199 2213 8.135382 ACTTAGTGGTATTTGATCAGTAGTGT 57.865 34.615 0.00 0.00 0.00 3.55
2247 2261 2.652095 CCCTTAGCGGTTCCGTGGA 61.652 63.158 12.81 0.00 0.00 4.02
2534 2548 5.702622 TTAGATGAATCGACAGCTTTTCG 57.297 39.130 8.00 8.00 37.66 3.46
2552 2566 6.240894 AGATTTGATCACTTGCTGGTTTAGA 58.759 36.000 0.00 0.00 0.00 2.10
2683 2731 9.230122 TGATCAAACATGAATTTAGCTCAACTA 57.770 29.630 0.00 0.00 0.00 2.24
2799 2847 4.275508 CCACAGCCACAGCCTGGT 62.276 66.667 0.00 0.00 42.99 4.00
2917 2965 1.449070 GGGCGCGCTACTAGGTTTT 60.449 57.895 32.29 0.00 0.00 2.43
2928 2976 2.733218 GTTTCTTTTGGGGCGCGC 60.733 61.111 25.94 25.94 0.00 6.86
3141 3189 6.826741 GGAGCCTAAAATACTTTACACATGGA 59.173 38.462 0.00 0.00 0.00 3.41
3155 3203 5.163290 GCTACTAGTCAAGGGAGCCTAAAAT 60.163 44.000 0.00 0.00 34.02 1.82
3174 3222 3.897505 AGGCACAAATTTGGAAAGCTACT 59.102 39.130 21.74 10.34 0.00 2.57
3231 3289 6.061022 TGCCACCTTTATGAGACAAGAATA 57.939 37.500 0.00 0.00 0.00 1.75
3405 3464 5.695816 TGTCCAACATTCTTGCAAATAAAGC 59.304 36.000 0.00 0.00 0.00 3.51
3470 3529 2.440409 ACTGTCCCTGATGTTCAATGC 58.560 47.619 0.00 0.00 0.00 3.56
3492 3551 5.755861 GTGAGCAGGATTTAGACCATTAGTC 59.244 44.000 0.00 0.00 46.71 2.59
3506 3565 1.202330 CTTGAGGAGGTGAGCAGGAT 58.798 55.000 0.00 0.00 0.00 3.24
3523 3582 4.023707 GCTTGTCAGTGCATGTTCTAACTT 60.024 41.667 0.00 0.00 0.00 2.66
3532 3591 1.211969 GCCAGCTTGTCAGTGCATG 59.788 57.895 0.00 0.00 0.00 4.06
3542 3601 9.065734 GAGATTATTCTTCTGGAAGCCAGCTTG 62.066 44.444 10.13 0.00 40.92 4.01
3543 3602 7.134782 GAGATTATTCTTCTGGAAGCCAGCTT 61.135 42.308 4.17 4.17 40.92 3.74
3579 3638 1.904287 TAATTGGCCGTGAGCTGTTT 58.096 45.000 0.00 0.00 43.05 2.83
3591 3650 7.444792 AGTGAGATCAGAAGAATGATAATTGGC 59.555 37.037 0.00 0.00 40.02 4.52
3624 3683 0.673644 AACTGTTCGAGATTGGGGCG 60.674 55.000 0.00 0.00 0.00 6.13
3627 3686 2.293122 TGCAAAACTGTTCGAGATTGGG 59.707 45.455 0.00 0.00 0.00 4.12
3636 3695 2.229784 CCTGAGGGATGCAAAACTGTTC 59.770 50.000 0.00 0.00 33.58 3.18
3651 3710 2.286523 AACTGGCCGTCTCCTGAGG 61.287 63.158 0.00 0.00 0.00 3.86
3722 3781 8.832735 TCCACTAATTGATCTTAAAACTACCCT 58.167 33.333 0.00 0.00 0.00 4.34
3726 3785 9.667107 CTGGTCCACTAATTGATCTTAAAACTA 57.333 33.333 0.00 0.00 0.00 2.24
3729 3788 9.581289 TTTCTGGTCCACTAATTGATCTTAAAA 57.419 29.630 0.00 0.00 0.00 1.52
3775 3840 6.672147 AGTATTTGTAACTGCTTTGAGCTTG 58.328 36.000 1.29 0.00 42.97 4.01
3850 3915 8.991026 TGACCTCTCAAATTTTGCAATTATTTG 58.009 29.630 26.22 26.22 39.46 2.32
3854 3919 7.984050 TGTTTGACCTCTCAAATTTTGCAATTA 59.016 29.630 0.00 0.00 45.93 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.