Multiple sequence alignment - TraesCS1B01G084900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G084900 chr1B 100.000 9191 0 0 1 9191 69571975 69562785 0.000000e+00 16973.0
1 TraesCS1B01G084900 chr1B 93.922 510 21 2 3 512 483599309 483599808 0.000000e+00 761.0
2 TraesCS1B01G084900 chr1B 89.412 510 45 1 3 512 143088205 143088705 1.300000e-177 634.0
3 TraesCS1B01G084900 chr7A 90.309 3199 197 57 5096 8235 157008085 157011229 0.000000e+00 4085.0
4 TraesCS1B01G084900 chr7A 89.967 2452 179 41 2622 5055 157005683 157008085 0.000000e+00 3103.0
5 TraesCS1B01G084900 chr7A 88.790 2016 144 31 687 2627 157003499 157005507 0.000000e+00 2396.0
6 TraesCS1B01G084900 chr7A 91.398 279 21 3 8258 8536 157012810 157013085 6.740000e-101 379.0
7 TraesCS1B01G084900 chr7A 93.548 248 13 2 8638 8885 157013345 157013589 5.240000e-97 366.0
8 TraesCS1B01G084900 chr7A 95.973 149 6 0 9043 9191 157013638 157013786 9.220000e-60 243.0
9 TraesCS1B01G084900 chr7A 95.918 49 2 0 8562 8610 157013233 157013281 7.650000e-11 80.5
10 TraesCS1B01G084900 chr7B 91.139 3047 162 31 648 3626 117205808 117208814 0.000000e+00 4032.0
11 TraesCS1B01G084900 chr7B 90.698 1720 112 19 5259 6960 117209986 117211675 0.000000e+00 2246.0
12 TraesCS1B01G084900 chr7B 92.875 1207 50 16 3645 4833 117208799 117209987 0.000000e+00 1720.0
13 TraesCS1B01G084900 chr7B 89.842 443 23 10 7805 8235 117212676 117213108 4.850000e-152 549.0
14 TraesCS1B01G084900 chr7B 95.327 321 15 0 7106 7426 117212065 117212385 2.290000e-140 510.0
15 TraesCS1B01G084900 chr7B 87.589 419 23 4 8774 9191 117214464 117214854 8.410000e-125 459.0
16 TraesCS1B01G084900 chr7B 92.251 271 18 1 7421 7688 117212411 117212681 1.870000e-101 381.0
17 TraesCS1B01G084900 chr7D 89.407 3021 212 36 690 3626 155286311 155289307 0.000000e+00 3707.0
18 TraesCS1B01G084900 chr7D 94.331 1623 78 6 5096 6713 155290699 155292312 0.000000e+00 2475.0
19 TraesCS1B01G084900 chr7D 92.457 1392 80 17 3679 5055 155289318 155290699 0.000000e+00 1965.0
20 TraesCS1B01G084900 chr7D 87.533 1508 115 35 6780 8235 155292600 155294086 0.000000e+00 1676.0
21 TraesCS1B01G084900 chr7D 94.361 266 10 4 8755 9018 155295829 155296091 4.000000e-108 403.0
22 TraesCS1B01G084900 chr7D 94.771 153 6 2 9041 9191 155296254 155296406 4.290000e-58 237.0
23 TraesCS1B01G084900 chr7D 88.172 186 15 6 8570 8755 155295535 155295713 2.010000e-51 215.0
24 TraesCS1B01G084900 chr4B 94.141 512 21 1 3 514 381112066 381112568 0.000000e+00 771.0
25 TraesCS1B01G084900 chr5B 91.765 510 32 2 3 512 271783272 271782773 0.000000e+00 701.0
26 TraesCS1B01G084900 chr5B 88.258 511 55 3 3 512 666861530 666862036 2.840000e-169 606.0
27 TraesCS1B01G084900 chr5B 92.105 38 2 1 8542 8579 699434888 699434852 1.700000e-02 52.8
28 TraesCS1B01G084900 chr1A 82.759 522 67 12 3 513 9334193 9334702 2.350000e-120 444.0
29 TraesCS1B01G084900 chr3B 82.274 519 73 7 3 512 101426413 101425905 1.830000e-116 431.0
30 TraesCS1B01G084900 chr6B 81.609 522 78 6 3 516 555143925 555144436 5.130000e-112 416.0
31 TraesCS1B01G084900 chr6B 83.704 405 48 6 3 399 641063351 641063745 5.240000e-97 366.0
32 TraesCS1B01G084900 chr6A 96.970 33 0 1 8542 8574 146517230 146517199 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G084900 chr1B 69562785 69571975 9190 True 16973.000000 16973 100.000000 1 9191 1 chr1B.!!$R1 9190
1 TraesCS1B01G084900 chr1B 143088205 143088705 500 False 634.000000 634 89.412000 3 512 1 chr1B.!!$F1 509
2 TraesCS1B01G084900 chr7A 157003499 157013786 10287 False 1521.785714 4085 92.271857 687 9191 7 chr7A.!!$F1 8504
3 TraesCS1B01G084900 chr7B 117205808 117214854 9046 False 1413.857143 4032 91.388714 648 9191 7 chr7B.!!$F1 8543
4 TraesCS1B01G084900 chr7D 155286311 155296406 10095 False 1525.428571 3707 91.576000 690 9191 7 chr7D.!!$F1 8501
5 TraesCS1B01G084900 chr4B 381112066 381112568 502 False 771.000000 771 94.141000 3 514 1 chr4B.!!$F1 511
6 TraesCS1B01G084900 chr5B 666861530 666862036 506 False 606.000000 606 88.258000 3 512 1 chr5B.!!$F1 509
7 TraesCS1B01G084900 chr1A 9334193 9334702 509 False 444.000000 444 82.759000 3 513 1 chr1A.!!$F1 510
8 TraesCS1B01G084900 chr3B 101425905 101426413 508 True 431.000000 431 82.274000 3 512 1 chr3B.!!$R1 509
9 TraesCS1B01G084900 chr6B 555143925 555144436 511 False 416.000000 416 81.609000 3 516 1 chr6B.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 605 0.323360 GCCCATACTCTGGCCAAACA 60.323 55.000 7.01 0.00 44.46 2.83 F
606 626 0.391661 GCCAGCAGATCGTCTTCCAA 60.392 55.000 0.00 0.00 0.00 3.53 F
1434 1501 0.392461 TTTCAAGGGCCGATTCCTCG 60.392 55.000 0.00 0.00 44.62 4.63 F
2465 2578 0.390866 TCAACGCCGCCGGTATTTTA 60.391 50.000 4.45 0.00 39.22 1.52 F
3660 3980 0.179936 GTCATGGCAGAGGCTAGCTT 59.820 55.000 15.72 6.94 40.87 3.74 F
5075 5424 0.108615 GCTCAGCAAGCGAGGAGTAA 60.109 55.000 13.03 0.00 42.21 2.24 F
5164 5514 1.168407 TGTGGCAAGTCTGAAGCAGC 61.168 55.000 0.00 0.00 0.00 5.25 F
5194 5544 2.387757 AGGTGCTGGAAACATTGTGTT 58.612 42.857 0.00 0.00 43.41 3.32 F
6298 6656 2.961741 TGCAGTTAGGCCATTTGTCAAA 59.038 40.909 5.01 0.00 0.00 2.69 F
7118 8009 0.593128 CTGTGAACGGGAAGCCTTTG 59.407 55.000 0.00 0.00 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 2494 0.888285 AAGGCAGAGCTCACAGTTGC 60.888 55.000 17.77 16.01 0.00 4.17 R
2451 2564 3.066481 TGGTTTTATAAAATACCGGCGGC 59.934 43.478 28.71 4.09 38.99 6.53 R
3146 3457 1.821216 TCAGCGAATTCCCCAGAAAC 58.179 50.000 0.00 0.00 35.09 2.78 R
3673 3993 0.173481 CAAGCTCTGCTACGTGCCTA 59.827 55.000 0.00 0.00 38.25 3.93 R
5147 5497 0.179009 AAGCTGCTTCAGACTTGCCA 60.179 50.000 9.53 0.00 32.44 4.92 R
6522 6888 2.254546 TAGTGCCACAACAGAAGGTG 57.745 50.000 0.00 0.00 34.82 4.00 R
7099 7721 0.593128 CAAAGGCTTCCCGTTCACAG 59.407 55.000 0.00 0.00 35.76 3.66 R
7118 8009 2.968574 TGATACAAGCTCCTCCCAGATC 59.031 50.000 0.00 0.00 0.00 2.75 R
7936 8891 0.180171 TGCCGAGTGGGGAACATATG 59.820 55.000 0.00 0.00 35.78 1.78 R
8627 11952 0.325933 TACTGAGGCACTGCAGCATT 59.674 50.000 15.27 0.00 41.55 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 148 4.454678 ACTTCTGAGAATTGCTTGTGTGA 58.545 39.130 0.00 0.00 0.00 3.58
213 216 1.174783 GTCGGTTCAGCTAGTCCAGA 58.825 55.000 0.00 0.00 0.00 3.86
232 235 2.821969 AGAGGTTCATCTTTTGCGCATT 59.178 40.909 12.75 0.00 0.00 3.56
294 300 6.521477 GCGCACTGTTTTTGTTTTTGTAATTT 59.479 30.769 0.30 0.00 0.00 1.82
295 301 7.688578 GCGCACTGTTTTTGTTTTTGTAATTTA 59.311 29.630 0.30 0.00 0.00 1.40
296 302 9.530129 CGCACTGTTTTTGTTTTTGTAATTTAA 57.470 25.926 0.00 0.00 0.00 1.52
383 403 5.163703 GGTCAACAAAATGCCATACGATGTA 60.164 40.000 0.00 0.00 0.00 2.29
421 441 0.515127 CGTACAATCACGGCTTTGCA 59.485 50.000 0.00 0.00 38.26 4.08
464 484 4.802039 GCGTATTCTAAAGTTCGATGACCA 59.198 41.667 0.00 0.00 0.00 4.02
504 524 2.490903 ACTACGGTGACCATGAGTGTAC 59.509 50.000 1.11 0.00 0.00 2.90
516 536 8.633561 TGACCATGAGTGTACTTATCTCAATAG 58.366 37.037 0.00 8.13 40.73 1.73
517 537 7.957002 ACCATGAGTGTACTTATCTCAATAGG 58.043 38.462 0.00 14.18 40.73 2.57
518 538 7.785028 ACCATGAGTGTACTTATCTCAATAGGA 59.215 37.037 19.66 0.00 40.73 2.94
519 539 8.642432 CCATGAGTGTACTTATCTCAATAGGAA 58.358 37.037 0.00 0.00 40.73 3.36
523 543 9.699703 GAGTGTACTTATCTCAATAGGAAATCC 57.300 37.037 0.00 0.00 0.00 3.01
524 544 8.652290 AGTGTACTTATCTCAATAGGAAATCCC 58.348 37.037 0.00 0.00 36.42 3.85
525 545 7.878644 GTGTACTTATCTCAATAGGAAATCCCC 59.121 40.741 0.00 0.00 36.42 4.81
526 546 6.455690 ACTTATCTCAATAGGAAATCCCCC 57.544 41.667 0.00 0.00 36.42 5.40
562 582 4.704833 CTGTCACCACCGGCTGGG 62.705 72.222 18.00 15.09 45.78 4.45
578 598 2.512896 GGCTGGCCCATACTCTGG 59.487 66.667 0.00 0.00 45.51 3.86
579 599 2.203266 GCTGGCCCATACTCTGGC 60.203 66.667 0.00 0.00 44.46 4.85
584 604 2.493547 GCCCATACTCTGGCCAAAC 58.506 57.895 7.01 0.00 44.46 2.93
585 605 0.323360 GCCCATACTCTGGCCAAACA 60.323 55.000 7.01 0.00 44.46 2.83
586 606 1.755179 CCCATACTCTGGCCAAACAG 58.245 55.000 7.01 5.62 44.46 3.16
587 607 1.683011 CCCATACTCTGGCCAAACAGG 60.683 57.143 7.01 4.18 44.46 4.00
596 616 4.428845 CCAAACAGGCCAGCAGAT 57.571 55.556 5.01 0.00 0.00 2.90
597 617 2.187073 CCAAACAGGCCAGCAGATC 58.813 57.895 5.01 0.00 0.00 2.75
598 618 1.651240 CCAAACAGGCCAGCAGATCG 61.651 60.000 5.01 0.00 0.00 3.69
599 619 0.957395 CAAACAGGCCAGCAGATCGT 60.957 55.000 5.01 0.00 0.00 3.73
600 620 0.674895 AAACAGGCCAGCAGATCGTC 60.675 55.000 5.01 0.00 0.00 4.20
601 621 1.548357 AACAGGCCAGCAGATCGTCT 61.548 55.000 5.01 0.00 0.00 4.18
602 622 1.220206 CAGGCCAGCAGATCGTCTT 59.780 57.895 5.01 0.00 0.00 3.01
603 623 0.809241 CAGGCCAGCAGATCGTCTTC 60.809 60.000 5.01 0.00 0.00 2.87
604 624 1.522580 GGCCAGCAGATCGTCTTCC 60.523 63.158 0.00 0.00 0.00 3.46
605 625 1.219124 GCCAGCAGATCGTCTTCCA 59.781 57.895 0.00 0.00 0.00 3.53
606 626 0.391661 GCCAGCAGATCGTCTTCCAA 60.392 55.000 0.00 0.00 0.00 3.53
607 627 1.945819 GCCAGCAGATCGTCTTCCAAA 60.946 52.381 0.00 0.00 0.00 3.28
608 628 2.426522 CCAGCAGATCGTCTTCCAAAA 58.573 47.619 0.00 0.00 0.00 2.44
609 629 2.160417 CCAGCAGATCGTCTTCCAAAAC 59.840 50.000 0.00 0.00 0.00 2.43
610 630 2.807967 CAGCAGATCGTCTTCCAAAACA 59.192 45.455 0.00 0.00 0.00 2.83
611 631 3.070018 AGCAGATCGTCTTCCAAAACAG 58.930 45.455 0.00 0.00 0.00 3.16
612 632 2.160417 GCAGATCGTCTTCCAAAACAGG 59.840 50.000 0.00 0.00 0.00 4.00
613 633 2.160417 CAGATCGTCTTCCAAAACAGGC 59.840 50.000 0.00 0.00 0.00 4.85
614 634 1.468914 GATCGTCTTCCAAAACAGGCC 59.531 52.381 0.00 0.00 0.00 5.19
615 635 0.536460 TCGTCTTCCAAAACAGGCCC 60.536 55.000 0.00 0.00 0.00 5.80
616 636 0.537371 CGTCTTCCAAAACAGGCCCT 60.537 55.000 0.00 0.00 0.00 5.19
617 637 1.248486 GTCTTCCAAAACAGGCCCTC 58.752 55.000 0.00 0.00 0.00 4.30
618 638 0.850100 TCTTCCAAAACAGGCCCTCA 59.150 50.000 0.00 0.00 0.00 3.86
619 639 0.961753 CTTCCAAAACAGGCCCTCAC 59.038 55.000 0.00 0.00 0.00 3.51
620 640 0.555769 TTCCAAAACAGGCCCTCACT 59.444 50.000 0.00 0.00 0.00 3.41
621 641 0.555769 TCCAAAACAGGCCCTCACTT 59.444 50.000 0.00 0.00 0.00 3.16
622 642 0.961753 CCAAAACAGGCCCTCACTTC 59.038 55.000 0.00 0.00 0.00 3.01
623 643 0.593128 CAAAACAGGCCCTCACTTCG 59.407 55.000 0.00 0.00 0.00 3.79
624 644 0.472471 AAAACAGGCCCTCACTTCGA 59.528 50.000 0.00 0.00 0.00 3.71
625 645 0.693049 AAACAGGCCCTCACTTCGAT 59.307 50.000 0.00 0.00 0.00 3.59
626 646 0.693049 AACAGGCCCTCACTTCGATT 59.307 50.000 0.00 0.00 0.00 3.34
627 647 0.693049 ACAGGCCCTCACTTCGATTT 59.307 50.000 0.00 0.00 0.00 2.17
628 648 1.089920 CAGGCCCTCACTTCGATTTG 58.910 55.000 0.00 0.00 0.00 2.32
629 649 0.693049 AGGCCCTCACTTCGATTTGT 59.307 50.000 0.00 0.00 0.00 2.83
630 650 1.073923 AGGCCCTCACTTCGATTTGTT 59.926 47.619 0.00 0.00 0.00 2.83
631 651 1.886542 GGCCCTCACTTCGATTTGTTT 59.113 47.619 0.00 0.00 0.00 2.83
632 652 2.095212 GGCCCTCACTTCGATTTGTTTC 60.095 50.000 0.00 0.00 0.00 2.78
633 653 2.814336 GCCCTCACTTCGATTTGTTTCT 59.186 45.455 0.00 0.00 0.00 2.52
634 654 3.253432 GCCCTCACTTCGATTTGTTTCTT 59.747 43.478 0.00 0.00 0.00 2.52
635 655 4.261614 GCCCTCACTTCGATTTGTTTCTTT 60.262 41.667 0.00 0.00 0.00 2.52
636 656 5.452777 CCCTCACTTCGATTTGTTTCTTTC 58.547 41.667 0.00 0.00 0.00 2.62
637 657 5.239525 CCCTCACTTCGATTTGTTTCTTTCT 59.760 40.000 0.00 0.00 0.00 2.52
638 658 6.238759 CCCTCACTTCGATTTGTTTCTTTCTT 60.239 38.462 0.00 0.00 0.00 2.52
639 659 7.196331 CCTCACTTCGATTTGTTTCTTTCTTT 58.804 34.615 0.00 0.00 0.00 2.52
640 660 7.377131 CCTCACTTCGATTTGTTTCTTTCTTTC 59.623 37.037 0.00 0.00 0.00 2.62
641 661 7.985476 TCACTTCGATTTGTTTCTTTCTTTCT 58.015 30.769 0.00 0.00 0.00 2.52
642 662 8.458843 TCACTTCGATTTGTTTCTTTCTTTCTT 58.541 29.630 0.00 0.00 0.00 2.52
643 663 8.737648 CACTTCGATTTGTTTCTTTCTTTCTTC 58.262 33.333 0.00 0.00 0.00 2.87
644 664 7.915923 ACTTCGATTTGTTTCTTTCTTTCTTCC 59.084 33.333 0.00 0.00 0.00 3.46
645 665 6.735130 TCGATTTGTTTCTTTCTTTCTTCCC 58.265 36.000 0.00 0.00 0.00 3.97
646 666 5.625311 CGATTTGTTTCTTTCTTTCTTCCCG 59.375 40.000 0.00 0.00 0.00 5.14
649 669 3.558418 TGTTTCTTTCTTTCTTCCCGACG 59.442 43.478 0.00 0.00 0.00 5.12
653 673 0.942410 TTCTTTCTTCCCGACGCGTG 60.942 55.000 20.70 9.33 0.00 5.34
673 693 4.929707 GTCGGCCCGCCCCTATTG 62.930 72.222 0.00 0.00 0.00 1.90
699 719 0.966875 TCGTCTTAACCCTAGCGCCA 60.967 55.000 2.29 0.00 0.00 5.69
757 778 2.982130 GCCGCCTCCTTTCTCTCA 59.018 61.111 0.00 0.00 0.00 3.27
765 786 1.753649 CTCCTTTCTCTCATCTCGGCA 59.246 52.381 0.00 0.00 0.00 5.69
1075 1139 3.968568 CCGACGTCGACACCACCA 61.969 66.667 37.65 0.00 43.02 4.17
1076 1140 2.728383 CGACGTCGACACCACCAC 60.728 66.667 33.35 0.00 43.02 4.16
1077 1141 2.355481 GACGTCGACACCACCACC 60.355 66.667 17.16 0.00 0.00 4.61
1207 1271 3.453559 TCGAAAGCCGATTCCTTCC 57.546 52.632 0.00 0.00 43.23 3.46
1253 1317 2.879462 CCTAACGCCGACGACAGC 60.879 66.667 0.00 0.00 43.93 4.40
1294 1358 3.733960 CTGACGCTGACGACGGGA 61.734 66.667 0.00 0.00 43.93 5.14
1380 1447 2.043046 CCGGCAACCCCAATCCAT 60.043 61.111 0.00 0.00 0.00 3.41
1434 1501 0.392461 TTTCAAGGGCCGATTCCTCG 60.392 55.000 0.00 0.00 44.62 4.63
1446 1525 4.704103 TCCTCGGTGGAGCAGCCT 62.704 66.667 0.00 0.00 40.56 4.58
1482 1561 3.626924 ACCGTCAAGGGCGAGCTT 61.627 61.111 0.00 0.00 46.96 3.74
1492 1571 1.742880 GGCGAGCTTGATGCAGACA 60.743 57.895 4.70 0.00 45.94 3.41
1497 1576 0.689055 AGCTTGATGCAGACACTGGA 59.311 50.000 0.00 0.00 45.94 3.86
1560 1639 1.143813 CCCAGAGGCCCATTACAGAT 58.856 55.000 0.00 0.00 0.00 2.90
1565 1644 2.441001 AGAGGCCCATTACAGATCAAGG 59.559 50.000 0.00 0.00 0.00 3.61
1569 1648 1.597742 CCATTACAGATCAAGGCCCG 58.402 55.000 0.00 0.00 0.00 6.13
1621 1700 3.195825 CCGTCTCCTCCACAATCTAGTTT 59.804 47.826 0.00 0.00 0.00 2.66
1753 1839 7.954666 ACATGCTGGGTGTAATTTTTATAGT 57.045 32.000 0.00 0.00 0.00 2.12
1758 1844 7.832187 TGCTGGGTGTAATTTTTATAGTAGCTT 59.168 33.333 0.00 0.00 0.00 3.74
1759 1845 8.129211 GCTGGGTGTAATTTTTATAGTAGCTTG 58.871 37.037 0.00 0.00 0.00 4.01
1761 1847 9.523168 TGGGTGTAATTTTTATAGTAGCTTGTT 57.477 29.630 0.00 0.00 0.00 2.83
1762 1848 9.999009 GGGTGTAATTTTTATAGTAGCTTGTTC 57.001 33.333 0.00 0.00 0.00 3.18
1778 1864 5.470437 AGCTTGTTCTTTTGGTAGAGTTAGC 59.530 40.000 0.00 0.00 0.00 3.09
1796 1882 5.705905 AGTTAGCGTTTTCTAATGAAGGCTT 59.294 36.000 0.00 0.00 36.82 4.35
1807 1893 1.442769 TGAAGGCTTGTTGCTCGATC 58.557 50.000 3.46 0.00 42.39 3.69
2219 2324 2.490903 AGCATGCACATCAAAGTTCCTC 59.509 45.455 21.98 0.00 0.00 3.71
2288 2397 0.394192 TGCTGTGAAGTCTGGTCAGG 59.606 55.000 0.00 0.00 0.00 3.86
2322 2431 5.562298 AACAAGTGTGTATAGGAGTGGTT 57.438 39.130 0.00 0.00 36.80 3.67
2430 2543 5.221048 GCACCTATATTTTGTTGCTACCTGG 60.221 44.000 0.00 0.00 0.00 4.45
2438 2551 2.846193 TGTTGCTACCTGGACTGTTTC 58.154 47.619 0.00 0.00 0.00 2.78
2451 2564 2.389713 CTGTTTCCAGTTGCTCAACG 57.610 50.000 7.06 3.19 45.50 4.10
2464 2577 1.641123 CTCAACGCCGCCGGTATTTT 61.641 55.000 4.45 0.00 39.22 1.82
2465 2578 0.390866 TCAACGCCGCCGGTATTTTA 60.391 50.000 4.45 0.00 39.22 1.52
2552 2669 4.157840 GGGCAAAGGAATCGAAGTGTATTT 59.842 41.667 0.00 0.00 0.00 1.40
2633 2931 3.134081 TCTGATATTCCAAACGTCCCTCC 59.866 47.826 0.00 0.00 0.00 4.30
2726 3025 6.481643 AGCATTGTATAGTTAGGTTGGTTGT 58.518 36.000 0.00 0.00 0.00 3.32
2744 3043 6.017192 TGGTTGTAATTTAAACCCCTGCATA 58.983 36.000 15.62 0.00 44.40 3.14
2786 3085 6.479006 TCAGTGGATCAGAAACATTGAATCT 58.521 36.000 0.00 0.00 29.62 2.40
2789 3088 8.180267 CAGTGGATCAGAAACATTGAATCTTAC 58.820 37.037 0.00 0.00 0.00 2.34
2793 3092 9.396022 GGATCAGAAACATTGAATCTTACCTTA 57.604 33.333 0.00 0.00 0.00 2.69
2841 3152 6.785963 TGTTACTAAGGTCAGGGGATTATAGG 59.214 42.308 0.00 0.00 0.00 2.57
2862 3173 5.765176 AGGTTAATAAAAAGACCGTGTTGC 58.235 37.500 0.00 0.00 37.26 4.17
2901 3212 8.208224 TCAGTTCTAATTGTGGTCTGTTTTCTA 58.792 33.333 0.00 0.00 0.00 2.10
2972 3283 7.444299 ACAAACATCATGCTCCTTTGTATTTT 58.556 30.769 2.97 0.00 34.16 1.82
2980 3291 7.669722 TCATGCTCCTTTGTATTTTCTTAACCT 59.330 33.333 0.00 0.00 0.00 3.50
3020 3331 6.668323 CAGAAACACATGGTTAAACTCGAAT 58.332 36.000 0.00 0.00 39.29 3.34
3055 3366 8.450578 TTTATATTTCACAAGGCAAGATCGAT 57.549 30.769 0.00 0.00 0.00 3.59
3115 3426 7.713507 AGCACAGTCTGTTAGTGTTTACATTTA 59.286 33.333 1.67 0.00 39.88 1.40
3327 3640 7.584122 AATAGAGACTTTATTACCTGCGAGA 57.416 36.000 0.00 0.00 0.00 4.04
3382 3695 4.526262 CACAATCCATTTTGGTCCAGGTAA 59.474 41.667 0.00 0.00 39.03 2.85
3416 3733 3.699538 AGGTTGAACCACCTTCTTGTTTC 59.300 43.478 17.83 0.00 45.76 2.78
3613 3933 0.613260 TAGGCTAGCCGGCAATATGG 59.387 55.000 31.54 11.20 41.95 2.74
3630 3950 1.407936 TGGCAGAAGCTAGCTAGAGG 58.592 55.000 25.15 9.34 41.70 3.69
3632 3952 1.339929 GGCAGAAGCTAGCTAGAGGTC 59.660 57.143 25.15 16.10 41.70 3.85
3641 3961 0.820074 AGCTAGAGGTCCGATGTCCG 60.820 60.000 0.00 0.00 38.18 4.79
3644 3964 0.253894 TAGAGGTCCGATGTCCGTCA 59.746 55.000 0.00 0.00 36.31 4.35
3660 3980 0.179936 GTCATGGCAGAGGCTAGCTT 59.820 55.000 15.72 6.94 40.87 3.74
3661 3981 0.467384 TCATGGCAGAGGCTAGCTTC 59.533 55.000 18.61 18.61 40.87 3.86
3666 3986 1.088910 GCAGAGGCTAGCTTCACTGC 61.089 60.000 26.61 26.12 42.44 4.40
3672 3992 1.639298 GCTAGCTTCACTGCCCAACG 61.639 60.000 7.70 0.00 0.00 4.10
3673 3993 0.320771 CTAGCTTCACTGCCCAACGT 60.321 55.000 0.00 0.00 0.00 3.99
3674 3994 0.970640 TAGCTTCACTGCCCAACGTA 59.029 50.000 0.00 0.00 0.00 3.57
3675 3995 0.320771 AGCTTCACTGCCCAACGTAG 60.321 55.000 0.00 0.00 0.00 3.51
3676 3996 1.298859 GCTTCACTGCCCAACGTAGG 61.299 60.000 0.00 0.00 0.00 3.18
3698 4020 1.831736 ACGTAGCAGAGCTTGGGTTAT 59.168 47.619 0.00 0.00 40.44 1.89
3701 4023 3.493350 CGTAGCAGAGCTTGGGTTATCAT 60.493 47.826 0.00 0.00 40.44 2.45
3720 4042 3.438434 TCATAGAGCAGTGATAGCTAGCG 59.562 47.826 9.55 0.00 43.58 4.26
3885 4214 6.016777 ACTCAAATGCTAAAGTGTTTCTCAGG 60.017 38.462 0.00 0.00 0.00 3.86
3886 4215 6.061441 TCAAATGCTAAAGTGTTTCTCAGGA 58.939 36.000 0.00 0.00 0.00 3.86
3892 4221 5.106515 GCTAAAGTGTTTCTCAGGATGGAAC 60.107 44.000 0.00 0.00 36.16 3.62
3925 4254 2.708216 TCTGCTTCAAAGTGTCACCA 57.292 45.000 0.00 0.00 0.00 4.17
3974 4303 5.463392 CACTGTATCACAAATATCTGGTCGG 59.537 44.000 0.00 0.00 0.00 4.79
3989 4318 3.761752 CTGGTCGGGTGTGGAATTTATTT 59.238 43.478 0.00 0.00 0.00 1.40
3990 4319 4.919793 TGGTCGGGTGTGGAATTTATTTA 58.080 39.130 0.00 0.00 0.00 1.40
3991 4320 5.511363 TGGTCGGGTGTGGAATTTATTTAT 58.489 37.500 0.00 0.00 0.00 1.40
3992 4321 5.952947 TGGTCGGGTGTGGAATTTATTTATT 59.047 36.000 0.00 0.00 0.00 1.40
4126 4465 6.912591 CGGCAATCTAGGAATTTTGTTATGAC 59.087 38.462 0.00 0.00 0.00 3.06
4148 4487 7.481642 TGACGAAGAAAGGAATCTACAGATAC 58.518 38.462 0.00 0.00 33.73 2.24
4199 4538 8.664798 GCAGACATTGTGTTAAGATATGTGTAA 58.335 33.333 7.69 0.00 30.14 2.41
4220 4559 7.596248 GTGTAACGTCTTAATTCTGGTAACTGA 59.404 37.037 0.00 0.00 43.48 3.41
4438 4777 1.692411 ACTCTGGTTTGCCCAAAGAC 58.308 50.000 0.00 0.00 44.65 3.01
4495 4834 6.086785 TCATGCAAAATTTCTGTGTCATCA 57.913 33.333 0.00 0.00 0.00 3.07
4644 4986 7.707624 AATGCAAGATTACCAAGAAATCTCA 57.292 32.000 0.00 0.00 41.68 3.27
4729 5074 6.604012 TGCAGATTTTCGAAGCGTATTTTTA 58.396 32.000 0.00 0.00 0.00 1.52
4730 5075 6.740905 TGCAGATTTTCGAAGCGTATTTTTAG 59.259 34.615 0.00 0.00 0.00 1.85
4731 5076 6.741358 GCAGATTTTCGAAGCGTATTTTTAGT 59.259 34.615 0.00 0.00 0.00 2.24
4746 5091 5.514500 TTTTTAGTTACCTCTGATGCCCT 57.486 39.130 0.00 0.00 0.00 5.19
4794 5139 7.487822 TCTACTTCTCCAAGATGTTCATCTT 57.512 36.000 18.64 18.64 41.23 2.40
4796 5141 8.378565 TCTACTTCTCCAAGATGTTCATCTTTT 58.621 33.333 20.91 3.78 38.73 2.27
4822 5167 7.916914 TTTTTCCTTCCACTAAGTACTATGC 57.083 36.000 0.00 0.00 32.89 3.14
4840 5185 2.054799 TGCAGTTTAGAGTTCTGGGGT 58.945 47.619 0.00 0.00 0.00 4.95
4906 5251 8.216423 ACATCTAGAGCAATCATAAAGAACCAT 58.784 33.333 0.00 0.00 0.00 3.55
4918 5263 7.377398 TCATAAAGAACCATTGGTTTGATGTG 58.623 34.615 21.66 16.86 46.95 3.21
4960 5305 5.560722 TTGTTCTTCTACCATCCACTTCA 57.439 39.130 0.00 0.00 0.00 3.02
4961 5306 5.152623 TGTTCTTCTACCATCCACTTCAG 57.847 43.478 0.00 0.00 0.00 3.02
4962 5307 3.895232 TCTTCTACCATCCACTTCAGC 57.105 47.619 0.00 0.00 0.00 4.26
4963 5308 3.173151 TCTTCTACCATCCACTTCAGCA 58.827 45.455 0.00 0.00 0.00 4.41
5057 5406 8.746922 TTATGACATGAATTTTCAAAGAGTGC 57.253 30.769 0.00 0.00 41.13 4.40
5058 5407 6.395426 TGACATGAATTTTCAAAGAGTGCT 57.605 33.333 0.00 0.00 41.13 4.40
5059 5408 6.441274 TGACATGAATTTTCAAAGAGTGCTC 58.559 36.000 0.00 0.00 41.13 4.26
5060 5409 6.039605 TGACATGAATTTTCAAAGAGTGCTCA 59.960 34.615 0.00 0.00 41.13 4.26
5061 5410 6.444633 ACATGAATTTTCAAAGAGTGCTCAG 58.555 36.000 0.00 0.00 41.13 3.35
5062 5411 4.863491 TGAATTTTCAAAGAGTGCTCAGC 58.137 39.130 0.00 0.00 33.55 4.26
5063 5412 4.338964 TGAATTTTCAAAGAGTGCTCAGCA 59.661 37.500 0.00 0.00 33.55 4.41
5064 5413 4.924305 ATTTTCAAAGAGTGCTCAGCAA 57.076 36.364 0.00 0.00 41.47 3.91
5065 5414 3.976793 TTTCAAAGAGTGCTCAGCAAG 57.023 42.857 0.00 0.00 41.47 4.01
5073 5422 2.264166 GCTCAGCAAGCGAGGAGT 59.736 61.111 13.03 0.00 42.21 3.85
5074 5423 1.513158 GCTCAGCAAGCGAGGAGTA 59.487 57.895 13.03 0.00 42.21 2.59
5075 5424 0.108615 GCTCAGCAAGCGAGGAGTAA 60.109 55.000 13.03 0.00 42.21 2.24
5076 5425 1.673033 GCTCAGCAAGCGAGGAGTAAA 60.673 52.381 13.03 0.00 42.21 2.01
5077 5426 2.688507 CTCAGCAAGCGAGGAGTAAAA 58.311 47.619 0.00 0.00 0.00 1.52
5078 5427 3.265791 CTCAGCAAGCGAGGAGTAAAAT 58.734 45.455 0.00 0.00 0.00 1.82
5079 5428 3.262420 TCAGCAAGCGAGGAGTAAAATC 58.738 45.455 0.00 0.00 0.00 2.17
5080 5429 3.002791 CAGCAAGCGAGGAGTAAAATCA 58.997 45.455 0.00 0.00 0.00 2.57
5081 5430 3.624861 CAGCAAGCGAGGAGTAAAATCAT 59.375 43.478 0.00 0.00 0.00 2.45
5082 5431 3.624861 AGCAAGCGAGGAGTAAAATCATG 59.375 43.478 0.00 0.00 0.00 3.07
5083 5432 3.623060 GCAAGCGAGGAGTAAAATCATGA 59.377 43.478 0.00 0.00 0.00 3.07
5084 5433 4.094887 GCAAGCGAGGAGTAAAATCATGAA 59.905 41.667 0.00 0.00 0.00 2.57
5085 5434 5.728898 GCAAGCGAGGAGTAAAATCATGAAG 60.729 44.000 0.00 0.00 0.00 3.02
5086 5435 5.344743 AGCGAGGAGTAAAATCATGAAGA 57.655 39.130 0.00 0.00 0.00 2.87
5087 5436 5.355596 AGCGAGGAGTAAAATCATGAAGAG 58.644 41.667 0.00 0.00 0.00 2.85
5088 5437 5.105146 AGCGAGGAGTAAAATCATGAAGAGT 60.105 40.000 0.00 0.00 0.00 3.24
5089 5438 5.233263 GCGAGGAGTAAAATCATGAAGAGTC 59.767 44.000 0.00 0.00 0.00 3.36
5090 5439 5.751028 CGAGGAGTAAAATCATGAAGAGTCC 59.249 44.000 0.00 7.32 0.00 3.85
5091 5440 6.627087 AGGAGTAAAATCATGAAGAGTCCA 57.373 37.500 18.35 0.00 0.00 4.02
5092 5441 7.205515 AGGAGTAAAATCATGAAGAGTCCAT 57.794 36.000 18.35 7.35 0.00 3.41
5093 5442 8.324191 AGGAGTAAAATCATGAAGAGTCCATA 57.676 34.615 18.35 0.00 0.00 2.74
5094 5443 8.428063 AGGAGTAAAATCATGAAGAGTCCATAG 58.572 37.037 18.35 0.00 0.00 2.23
5130 5480 5.499139 TGCTTGACAACTCTAAAGTTTGG 57.501 39.130 0.00 0.00 43.28 3.28
5146 5496 7.538303 AAAGTTTGGTACTTCTTTTTGCATG 57.462 32.000 0.00 0.00 46.34 4.06
5147 5497 6.220726 AGTTTGGTACTTCTTTTTGCATGT 57.779 33.333 0.00 0.00 31.29 3.21
5164 5514 1.168407 TGTGGCAAGTCTGAAGCAGC 61.168 55.000 0.00 0.00 0.00 5.25
5185 5535 3.243839 GCTTTTGATGAAGGTGCTGGAAA 60.244 43.478 0.00 0.00 0.00 3.13
5189 5539 3.499338 TGATGAAGGTGCTGGAAACATT 58.501 40.909 0.00 0.00 41.51 2.71
5194 5544 2.387757 AGGTGCTGGAAACATTGTGTT 58.612 42.857 0.00 0.00 43.41 3.32
5206 5556 8.428063 TGGAAACATTGTGTTGATTTATCCTTT 58.572 29.630 9.22 0.00 40.14 3.11
5304 5654 3.305267 CCTCATCAGATCAACTAGCCTCG 60.305 52.174 0.00 0.00 0.00 4.63
5317 5667 3.639094 ACTAGCCTCGTTAATCTGAGCAT 59.361 43.478 0.00 0.00 0.00 3.79
5324 5674 5.001237 TCGTTAATCTGAGCATCCGTTTA 57.999 39.130 0.00 0.00 0.00 2.01
5326 5676 6.046593 TCGTTAATCTGAGCATCCGTTTATT 58.953 36.000 0.00 0.00 0.00 1.40
5678 6030 9.480053 CTTGTATGGATTTTGTTTTCATCTGTT 57.520 29.630 0.00 0.00 0.00 3.16
5713 6065 7.527568 AGCTACCTTTACTATGGTGTAGATC 57.472 40.000 8.16 0.00 37.74 2.75
5716 6068 6.732896 ACCTTTACTATGGTGTAGATCCTG 57.267 41.667 0.00 0.00 34.90 3.86
5938 6291 3.377485 TGTCCGTACTGAGATAAGCTGTC 59.623 47.826 0.00 0.00 0.00 3.51
5939 6292 3.377485 GTCCGTACTGAGATAAGCTGTCA 59.623 47.826 0.00 0.00 0.00 3.58
6298 6656 2.961741 TGCAGTTAGGCCATTTGTCAAA 59.038 40.909 5.01 0.00 0.00 2.69
6339 6700 6.187727 TGGACTATTGAGGAAAGAAGTGTT 57.812 37.500 0.00 0.00 0.00 3.32
6340 6701 7.311092 TGGACTATTGAGGAAAGAAGTGTTA 57.689 36.000 0.00 0.00 0.00 2.41
6341 6702 7.918076 TGGACTATTGAGGAAAGAAGTGTTAT 58.082 34.615 0.00 0.00 0.00 1.89
6342 6703 8.383175 TGGACTATTGAGGAAAGAAGTGTTATT 58.617 33.333 0.00 0.00 0.00 1.40
6343 6704 8.669243 GGACTATTGAGGAAAGAAGTGTTATTG 58.331 37.037 0.00 0.00 0.00 1.90
6344 6705 9.220767 GACTATTGAGGAAAGAAGTGTTATTGT 57.779 33.333 0.00 0.00 0.00 2.71
6345 6706 9.003658 ACTATTGAGGAAAGAAGTGTTATTGTG 57.996 33.333 0.00 0.00 0.00 3.33
6346 6707 7.823745 ATTGAGGAAAGAAGTGTTATTGTGT 57.176 32.000 0.00 0.00 0.00 3.72
6395 6756 3.984508 ATACCTACCTTCGACATCACG 57.015 47.619 0.00 0.00 0.00 4.35
6411 6772 3.755112 TCACGGAAACCTGTTGTATGA 57.245 42.857 0.00 0.00 0.00 2.15
6448 6809 4.929146 AGGCTAAGGTGTTTACTTGGAT 57.071 40.909 0.00 0.00 0.00 3.41
6457 6818 5.068591 AGGTGTTTACTTGGATTGGTTTCAC 59.931 40.000 0.00 0.00 0.00 3.18
6522 6888 4.120589 GCTGGTTGGCACTATAACTACTC 58.879 47.826 0.00 0.00 0.00 2.59
6546 6912 4.649218 ACCTTCTGTTGTGGCACTAAATTT 59.351 37.500 19.83 0.00 0.00 1.82
6551 6917 5.240623 TCTGTTGTGGCACTAAATTTGGTAG 59.759 40.000 19.83 3.74 0.00 3.18
6610 6978 9.300681 TCTTGATTTCATCACTGGAAAAGTAAT 57.699 29.630 0.00 0.00 39.39 1.89
6623 6991 8.340443 ACTGGAAAAGTAATTCGAAACTACAAC 58.660 33.333 17.98 5.56 37.36 3.32
6679 7054 7.093771 TGCATGTCAAGTATTCTAGTCTCAAGA 60.094 37.037 0.00 0.00 0.00 3.02
6748 7364 9.787435 AGTGGAAATGTCATTAGTTTGTTACTA 57.213 29.630 0.00 0.00 38.33 1.82
6773 7389 6.951971 ACTCTATAAGTTCCATGCTGTCTTT 58.048 36.000 0.00 0.00 33.03 2.52
6784 7400 3.616956 TGCTGTCTTTGCTGCTAGTAT 57.383 42.857 0.00 0.00 34.93 2.12
6844 7460 8.817100 CGTAGAATGTAAGCATGTTGATCTTTA 58.183 33.333 0.00 0.00 35.15 1.85
6925 7547 9.431887 AGAAAATTAACTTCAATGCTACTCGTA 57.568 29.630 2.82 0.00 0.00 3.43
6973 7595 8.880878 TTACATTGCTTATCTATGCGAACTTA 57.119 30.769 0.00 0.00 32.28 2.24
6975 7597 8.208718 ACATTGCTTATCTATGCGAACTTAAA 57.791 30.769 0.00 0.00 32.28 1.52
7033 7655 7.328493 GCAATGGTTACATTTTCTTAACCTGTC 59.672 37.037 10.93 0.00 44.69 3.51
7041 7663 5.488645 TTTTCTTAACCTGTCGTTGGTTC 57.511 39.130 11.37 0.00 45.52 3.62
7062 7684 6.408891 GGTTCCCCCAGGATATTATAATACCG 60.409 46.154 7.34 7.66 43.54 4.02
7099 7721 5.816777 AGAGAATTGCTTTGCATCTAGACTC 59.183 40.000 0.00 0.00 38.76 3.36
7118 8009 0.593128 CTGTGAACGGGAAGCCTTTG 59.407 55.000 0.00 0.00 0.00 2.77
7185 8076 4.615949 TCGTACTACTGACTACGAGGATC 58.384 47.826 0.00 0.00 39.77 3.36
7261 8152 3.804325 TCTTCAGTCTTCTTTGAGCAACG 59.196 43.478 0.00 0.00 0.00 4.10
7343 8234 4.299155 ACATCTATATGTCAGAAACCGCG 58.701 43.478 0.00 0.00 42.92 6.46
7450 8384 9.555411 TGGTAATAGGGCAATCACTAATCTATA 57.445 33.333 0.00 0.00 0.00 1.31
7451 8385 9.819267 GGTAATAGGGCAATCACTAATCTATAC 57.181 37.037 0.00 0.00 0.00 1.47
7455 8389 9.950496 ATAGGGCAATCACTAATCTATACTTTG 57.050 33.333 0.00 0.00 0.00 2.77
7456 8390 8.034313 AGGGCAATCACTAATCTATACTTTGA 57.966 34.615 0.00 0.00 0.00 2.69
7457 8391 8.153550 AGGGCAATCACTAATCTATACTTTGAG 58.846 37.037 0.00 0.00 0.00 3.02
7458 8392 8.150945 GGGCAATCACTAATCTATACTTTGAGA 58.849 37.037 0.00 0.00 0.00 3.27
7459 8393 9.717942 GGCAATCACTAATCTATACTTTGAGAT 57.282 33.333 0.00 0.00 33.75 2.75
7545 8479 3.953775 CGTGGACCCTGGTTGGCT 61.954 66.667 0.00 0.00 0.00 4.75
7659 8596 1.211457 AGCTGCTAGTAATTGCCAGCT 59.789 47.619 16.19 16.19 38.14 4.24
7665 8602 4.141733 TGCTAGTAATTGCCAGCTGTATGA 60.142 41.667 13.81 0.00 35.05 2.15
7687 8624 5.834742 TGATGCAATGCCTATACCTTGAAAT 59.165 36.000 1.53 0.00 0.00 2.17
7691 8629 6.149308 TGCAATGCCTATACCTTGAAATATCG 59.851 38.462 1.53 0.00 0.00 2.92
7693 8631 7.624344 GCAATGCCTATACCTTGAAATATCGTC 60.624 40.741 0.00 0.00 0.00 4.20
7715 8653 2.480416 GCATCACGAGGTTCTCCTGTAG 60.480 54.545 0.00 0.00 45.24 2.74
7718 8656 0.702902 ACGAGGTTCTCCTGTAGGGA 59.297 55.000 0.00 0.00 45.24 4.20
7722 8660 3.108376 GAGGTTCTCCTGTAGGGAACAT 58.892 50.000 22.39 18.83 45.24 2.71
7724 8662 2.092914 GGTTCTCCTGTAGGGAACATGG 60.093 54.545 22.39 4.40 44.58 3.66
7755 8693 9.110502 GCTATGGAGCTAAGTGTAGTAAATTTT 57.889 33.333 0.00 0.00 45.98 1.82
7758 8696 6.712998 TGGAGCTAAGTGTAGTAAATTTTGCA 59.287 34.615 0.00 0.00 0.00 4.08
7774 8724 5.811399 TTTTGCACATACCGATAAAGAGG 57.189 39.130 0.00 0.00 0.00 3.69
7777 8727 3.131396 GCACATACCGATAAAGAGGTGG 58.869 50.000 0.00 0.00 41.51 4.61
7878 8833 7.273815 GTGTGCTCACTAAATTCTACTAGACAC 59.726 40.741 11.58 0.00 40.98 3.67
7900 8855 6.967199 ACACTCACGATTTTCTGTTTCTTTTC 59.033 34.615 0.00 0.00 0.00 2.29
7918 8873 6.512297 TCTTTTCTGCAACTCCCATTTTTAC 58.488 36.000 0.00 0.00 0.00 2.01
7935 8890 1.102978 TACGCTCAGTGCAGCAGATA 58.897 50.000 0.00 2.54 43.06 1.98
7936 8891 0.459237 ACGCTCAGTGCAGCAGATAC 60.459 55.000 0.00 0.00 43.06 2.24
7951 8906 4.040952 AGCAGATACATATGTTCCCCACTC 59.959 45.833 14.77 0.86 0.00 3.51
7962 8917 1.202099 TCCCCACTCGGCATGGTTTA 61.202 55.000 0.00 0.00 35.23 2.01
7967 8922 2.556622 CCACTCGGCATGGTTTAAGTTT 59.443 45.455 0.00 0.00 32.08 2.66
7977 8932 4.893424 TGGTTTAAGTTTCACTGCTGTC 57.107 40.909 0.00 0.00 0.00 3.51
7978 8933 4.265893 TGGTTTAAGTTTCACTGCTGTCA 58.734 39.130 0.00 0.00 0.00 3.58
7979 8934 4.095782 TGGTTTAAGTTTCACTGCTGTCAC 59.904 41.667 0.00 0.00 0.00 3.67
7980 8935 4.095782 GGTTTAAGTTTCACTGCTGTCACA 59.904 41.667 0.00 0.00 0.00 3.58
7981 8936 5.266242 GTTTAAGTTTCACTGCTGTCACAG 58.734 41.667 0.00 0.00 43.59 3.66
7984 8950 4.607293 AGTTTCACTGCTGTCACAGATA 57.393 40.909 9.70 0.00 40.25 1.98
7996 8962 4.710324 TGTCACAGATAAGGTTTTCCGTT 58.290 39.130 0.00 0.00 46.35 4.44
8062 9028 2.283101 GTCACATGCTTGGGCCCA 60.283 61.111 24.45 24.45 37.74 5.36
8125 9091 4.438841 GCAAGAGGCAAAGGATGAATCCA 61.439 47.826 11.85 0.00 45.62 3.41
8197 9163 3.368531 GGAGAAACTAACGTGATGGCTCT 60.369 47.826 0.00 0.00 0.00 4.09
8246 9213 9.280174 TGATAGGGTAGTTTACAAAGTTTTCTG 57.720 33.333 0.00 0.00 0.00 3.02
8247 9214 6.954487 AGGGTAGTTTACAAAGTTTTCTGG 57.046 37.500 0.00 0.00 0.00 3.86
8248 9215 5.301045 AGGGTAGTTTACAAAGTTTTCTGGC 59.699 40.000 0.00 0.00 0.00 4.85
8250 9217 6.487668 GGGTAGTTTACAAAGTTTTCTGGCTA 59.512 38.462 0.00 0.00 0.00 3.93
8251 9218 7.308408 GGGTAGTTTACAAAGTTTTCTGGCTAG 60.308 40.741 0.00 0.00 0.00 3.42
8253 9220 7.640597 AGTTTACAAAGTTTTCTGGCTAGTT 57.359 32.000 0.00 0.00 0.00 2.24
8254 9221 8.063200 AGTTTACAAAGTTTTCTGGCTAGTTT 57.937 30.769 0.00 0.00 0.00 2.66
8255 9222 7.973944 AGTTTACAAAGTTTTCTGGCTAGTTTG 59.026 33.333 8.08 8.08 37.90 2.93
8264 11338 1.902508 CTGGCTAGTTTGTCTCCTCCA 59.097 52.381 0.00 0.00 0.00 3.86
8265 11339 1.623811 TGGCTAGTTTGTCTCCTCCAC 59.376 52.381 0.00 0.00 0.00 4.02
8278 11352 0.322098 CCTCCACCGCCATGTTGTTA 60.322 55.000 0.00 0.00 0.00 2.41
8311 11385 1.061570 GCACATGTAGCGCTTCTGC 59.938 57.895 18.68 13.32 0.00 4.26
8322 11396 1.296068 GCTTCTGCAGCTCCTCAGT 59.704 57.895 9.47 0.00 46.27 3.41
8355 11429 0.620556 ACATTCTCCAGTTCGGCCAT 59.379 50.000 2.24 0.00 33.14 4.40
8379 11453 1.864711 CTTGCGTCGAGTCAAGGAAAA 59.135 47.619 15.27 0.00 36.83 2.29
8380 11454 1.497991 TGCGTCGAGTCAAGGAAAAG 58.502 50.000 0.00 0.00 0.00 2.27
8381 11455 0.164002 GCGTCGAGTCAAGGAAAAGC 59.836 55.000 0.00 0.00 0.00 3.51
8385 11459 2.155924 GTCGAGTCAAGGAAAAGCTTCG 59.844 50.000 0.00 0.00 31.77 3.79
8401 11475 3.403057 CGGCGAACACACACGGAG 61.403 66.667 0.00 0.00 0.00 4.63
8410 11484 0.249868 CACACACGGAGGAAGAAGCA 60.250 55.000 0.00 0.00 0.00 3.91
8426 11500 5.301835 AGAAGCAGCAGGAACATATGTAT 57.698 39.130 9.21 0.00 0.00 2.29
8427 11501 6.425210 AGAAGCAGCAGGAACATATGTATA 57.575 37.500 9.21 0.00 0.00 1.47
8428 11502 7.013823 AGAAGCAGCAGGAACATATGTATAT 57.986 36.000 9.21 0.00 0.00 0.86
8464 11538 1.971962 GCGCAAACGAAGTGATTTCTG 59.028 47.619 0.30 0.00 45.00 3.02
8470 11544 2.417719 ACGAAGTGATTTCTGGACAGC 58.582 47.619 0.00 0.00 42.51 4.40
8504 11578 2.097038 CCGAGCTCCTGCAACTTCG 61.097 63.158 8.47 0.00 42.74 3.79
8529 11603 2.027745 TCTCTTTCATCACAGCCTCCAC 60.028 50.000 0.00 0.00 0.00 4.02
8536 11610 1.071987 CACAGCCTCCACAAGAGCA 59.928 57.895 0.00 0.00 41.74 4.26
8537 11611 0.535780 CACAGCCTCCACAAGAGCAA 60.536 55.000 0.00 0.00 41.74 3.91
8538 11612 0.536006 ACAGCCTCCACAAGAGCAAC 60.536 55.000 0.00 0.00 41.74 4.17
8539 11613 0.250640 CAGCCTCCACAAGAGCAACT 60.251 55.000 0.00 0.00 41.74 3.16
8540 11614 1.002430 CAGCCTCCACAAGAGCAACTA 59.998 52.381 0.00 0.00 41.74 2.24
8543 11617 3.519510 AGCCTCCACAAGAGCAACTATTA 59.480 43.478 0.00 0.00 41.74 0.98
8544 11618 4.164988 AGCCTCCACAAGAGCAACTATTAT 59.835 41.667 0.00 0.00 41.74 1.28
8545 11619 5.366768 AGCCTCCACAAGAGCAACTATTATA 59.633 40.000 0.00 0.00 41.74 0.98
8546 11620 6.043706 AGCCTCCACAAGAGCAACTATTATAT 59.956 38.462 0.00 0.00 41.74 0.86
8547 11621 6.712547 GCCTCCACAAGAGCAACTATTATATT 59.287 38.462 0.00 0.00 41.74 1.28
8548 11622 7.229506 GCCTCCACAAGAGCAACTATTATATTT 59.770 37.037 0.00 0.00 41.74 1.40
8549 11623 8.778358 CCTCCACAAGAGCAACTATTATATTTC 58.222 37.037 0.00 0.00 41.74 2.17
8550 11624 9.553064 CTCCACAAGAGCAACTATTATATTTCT 57.447 33.333 0.00 0.00 35.31 2.52
8551 11625 9.905713 TCCACAAGAGCAACTATTATATTTCTT 57.094 29.630 0.00 0.00 0.00 2.52
8557 11631 9.618890 AGAGCAACTATTATATTTCTTTGCAGA 57.381 29.630 6.22 0.00 40.23 4.26
8558 11632 9.875675 GAGCAACTATTATATTTCTTTGCAGAG 57.124 33.333 0.00 0.00 40.23 3.35
8560 11634 8.078596 GCAACTATTATATTTCTTTGCAGAGGG 58.921 37.037 4.15 0.00 38.18 4.30
8613 11938 5.593010 AGAAGCGCTATAACTTGGAACTAG 58.407 41.667 12.05 0.00 0.00 2.57
8614 11939 5.127356 AGAAGCGCTATAACTTGGAACTAGT 59.873 40.000 12.05 0.00 0.00 2.57
8615 11940 5.340439 AGCGCTATAACTTGGAACTAGTT 57.660 39.130 8.99 8.13 39.13 2.24
8616 11941 5.349809 AGCGCTATAACTTGGAACTAGTTC 58.650 41.667 24.73 24.73 37.12 3.01
8621 11946 7.201750 CGCTATAACTTGGAACTAGTTCTCTCT 60.202 40.741 29.66 15.85 39.45 3.10
8623 11948 5.731957 AACTTGGAACTAGTTCTCTCTCC 57.268 43.478 29.66 16.90 39.45 3.71
8625 11950 5.148502 ACTTGGAACTAGTTCTCTCTCCAA 58.851 41.667 29.66 23.87 39.45 3.53
8626 11951 5.011227 ACTTGGAACTAGTTCTCTCTCCAAC 59.989 44.000 29.66 13.78 39.45 3.77
8627 11952 4.480115 TGGAACTAGTTCTCTCTCCAACA 58.520 43.478 29.66 15.89 39.45 3.33
8629 11954 5.544176 TGGAACTAGTTCTCTCTCCAACAAT 59.456 40.000 29.66 0.00 39.45 2.71
8630 11955 5.872070 GGAACTAGTTCTCTCTCCAACAATG 59.128 44.000 29.66 0.00 39.45 2.82
8631 11956 4.826556 ACTAGTTCTCTCTCCAACAATGC 58.173 43.478 0.00 0.00 0.00 3.56
8632 11957 4.530161 ACTAGTTCTCTCTCCAACAATGCT 59.470 41.667 0.00 0.00 0.00 3.79
8633 11958 3.672808 AGTTCTCTCTCCAACAATGCTG 58.327 45.455 0.00 0.00 0.00 4.41
8634 11959 2.105006 TCTCTCTCCAACAATGCTGC 57.895 50.000 0.00 0.00 0.00 5.25
8635 11960 1.348696 TCTCTCTCCAACAATGCTGCA 59.651 47.619 4.13 4.13 0.00 4.41
8636 11961 1.738350 CTCTCTCCAACAATGCTGCAG 59.262 52.381 10.11 10.11 0.00 4.41
8658 12012 2.280628 GCCTCAGTACCTGCATGTTAC 58.719 52.381 0.00 0.00 0.00 2.50
8689 12043 4.755123 CGGTTGGAATTATGATGGTCCTAC 59.245 45.833 0.00 0.00 35.82 3.18
8692 12046 6.357367 GTTGGAATTATGATGGTCCTACTGT 58.643 40.000 0.00 0.00 34.37 3.55
8735 12089 7.475771 TTGGAAACATTTAGCACAACAAATC 57.524 32.000 0.00 0.00 42.32 2.17
8885 12357 5.916661 AACTAGTTGAGTGATACACGGAT 57.083 39.130 7.48 0.00 38.87 4.18
8890 12362 3.520290 TGAGTGATACACGGATGGTTC 57.480 47.619 0.00 0.00 39.64 3.62
9008 12648 5.679734 ATCGCATCCATTGAATAGTTGAC 57.320 39.130 0.00 0.00 0.00 3.18
9106 12746 1.882623 CAAGTTCAAGCAGGTCCTTCC 59.117 52.381 0.00 0.00 0.00 3.46
9154 12794 4.036498 CCTCAGCATTCATCTTGTTCATCC 59.964 45.833 0.00 0.00 0.00 3.51
9162 12802 5.089970 TCATCTTGTTCATCCGATCAACT 57.910 39.130 0.00 0.00 29.77 3.16
9175 12815 3.061295 CCGATCAACTGAATCTGTCAACG 59.939 47.826 0.00 0.00 35.22 4.10
9177 12817 4.433413 CGATCAACTGAATCTGTCAACGTG 60.433 45.833 0.00 0.00 35.22 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.835113 ACTCTTAACAAGTGTTTGCATGT 57.165 34.783 1.35 0.00 39.31 3.21
213 216 3.426159 CGTAATGCGCAAAAGATGAACCT 60.426 43.478 17.11 0.00 0.00 3.50
232 235 2.726989 CGAAACTAAGCACTCTCGCGTA 60.727 50.000 5.77 0.00 36.85 4.42
297 303 9.702253 TGTTAGTGGGCCAAGAAATTATTATTA 57.298 29.630 8.40 0.00 0.00 0.98
298 304 8.602472 TGTTAGTGGGCCAAGAAATTATTATT 57.398 30.769 8.40 0.00 0.00 1.40
299 305 8.602472 TTGTTAGTGGGCCAAGAAATTATTAT 57.398 30.769 8.40 0.00 0.00 1.28
300 306 8.308207 GTTTGTTAGTGGGCCAAGAAATTATTA 58.692 33.333 8.40 0.00 0.00 0.98
301 307 6.926630 TTGTTAGTGGGCCAAGAAATTATT 57.073 33.333 8.40 0.00 0.00 1.40
302 308 6.268847 TGTTTGTTAGTGGGCCAAGAAATTAT 59.731 34.615 8.40 0.00 0.00 1.28
383 403 2.295349 ACGGTCACTGACTTGTCGTATT 59.705 45.455 9.08 0.00 32.47 1.89
418 438 5.803461 GCTCGTTACGGTTATCATATATGCA 59.197 40.000 7.92 0.00 0.00 3.96
421 441 6.187125 ACGCTCGTTACGGTTATCATATAT 57.813 37.500 4.53 0.00 34.00 0.86
464 484 7.095102 ACCGTAGTTAAAACAAAAGCACGATAT 60.095 33.333 0.00 0.00 0.00 1.63
545 565 4.704833 CCCAGCCGGTGGTGACAG 62.705 72.222 15.42 0.00 46.37 3.51
561 581 2.512896 CCAGAGTATGGGCCAGCC 59.487 66.667 13.78 4.53 46.36 4.85
579 599 1.651240 CGATCTGCTGGCCTGTTTGG 61.651 60.000 11.69 0.00 39.35 3.28
580 600 0.957395 ACGATCTGCTGGCCTGTTTG 60.957 55.000 11.69 2.31 0.00 2.93
581 601 0.674895 GACGATCTGCTGGCCTGTTT 60.675 55.000 11.69 0.00 0.00 2.83
582 602 1.078848 GACGATCTGCTGGCCTGTT 60.079 57.895 11.69 0.00 0.00 3.16
583 603 1.548357 AAGACGATCTGCTGGCCTGT 61.548 55.000 11.69 0.00 0.00 4.00
584 604 0.809241 GAAGACGATCTGCTGGCCTG 60.809 60.000 3.32 4.26 0.00 4.85
585 605 1.519719 GAAGACGATCTGCTGGCCT 59.480 57.895 3.32 0.00 0.00 5.19
586 606 1.522580 GGAAGACGATCTGCTGGCC 60.523 63.158 0.00 0.00 0.00 5.36
587 607 0.391661 TTGGAAGACGATCTGCTGGC 60.392 55.000 0.00 0.00 0.00 4.85
588 608 2.099141 TTTGGAAGACGATCTGCTGG 57.901 50.000 0.00 0.00 0.00 4.85
589 609 2.807967 TGTTTTGGAAGACGATCTGCTG 59.192 45.455 0.00 0.00 0.00 4.41
590 610 3.070018 CTGTTTTGGAAGACGATCTGCT 58.930 45.455 0.00 0.00 0.00 4.24
591 611 2.160417 CCTGTTTTGGAAGACGATCTGC 59.840 50.000 0.00 0.00 0.00 4.26
592 612 2.160417 GCCTGTTTTGGAAGACGATCTG 59.840 50.000 0.00 0.00 0.00 2.90
593 613 2.427506 GCCTGTTTTGGAAGACGATCT 58.572 47.619 0.00 0.00 0.00 2.75
594 614 1.468914 GGCCTGTTTTGGAAGACGATC 59.531 52.381 0.00 0.00 0.00 3.69
595 615 1.534729 GGCCTGTTTTGGAAGACGAT 58.465 50.000 0.00 0.00 0.00 3.73
596 616 0.536460 GGGCCTGTTTTGGAAGACGA 60.536 55.000 0.84 0.00 0.00 4.20
597 617 0.537371 AGGGCCTGTTTTGGAAGACG 60.537 55.000 4.50 0.00 0.00 4.18
598 618 1.248486 GAGGGCCTGTTTTGGAAGAC 58.752 55.000 12.95 0.00 0.00 3.01
599 619 0.850100 TGAGGGCCTGTTTTGGAAGA 59.150 50.000 12.95 0.00 0.00 2.87
600 620 0.961753 GTGAGGGCCTGTTTTGGAAG 59.038 55.000 12.95 0.00 0.00 3.46
601 621 0.555769 AGTGAGGGCCTGTTTTGGAA 59.444 50.000 12.95 0.00 0.00 3.53
602 622 0.555769 AAGTGAGGGCCTGTTTTGGA 59.444 50.000 12.95 0.00 0.00 3.53
603 623 0.961753 GAAGTGAGGGCCTGTTTTGG 59.038 55.000 12.95 0.00 0.00 3.28
604 624 0.593128 CGAAGTGAGGGCCTGTTTTG 59.407 55.000 12.95 2.21 0.00 2.44
605 625 0.472471 TCGAAGTGAGGGCCTGTTTT 59.528 50.000 12.95 0.89 0.00 2.43
606 626 0.693049 ATCGAAGTGAGGGCCTGTTT 59.307 50.000 12.95 1.33 0.00 2.83
607 627 0.693049 AATCGAAGTGAGGGCCTGTT 59.307 50.000 12.95 0.30 0.00 3.16
608 628 0.693049 AAATCGAAGTGAGGGCCTGT 59.307 50.000 12.95 0.00 0.00 4.00
609 629 1.089920 CAAATCGAAGTGAGGGCCTG 58.910 55.000 12.95 0.00 0.00 4.85
610 630 0.693049 ACAAATCGAAGTGAGGGCCT 59.307 50.000 5.25 5.25 0.00 5.19
611 631 1.534729 AACAAATCGAAGTGAGGGCC 58.465 50.000 0.00 0.00 0.00 5.80
612 632 2.814336 AGAAACAAATCGAAGTGAGGGC 59.186 45.455 5.77 0.00 0.00 5.19
613 633 5.239525 AGAAAGAAACAAATCGAAGTGAGGG 59.760 40.000 5.77 0.00 0.00 4.30
614 634 6.305693 AGAAAGAAACAAATCGAAGTGAGG 57.694 37.500 5.77 0.00 0.00 3.86
615 635 8.125448 AGAAAGAAAGAAACAAATCGAAGTGAG 58.875 33.333 5.77 0.00 0.00 3.51
616 636 7.985476 AGAAAGAAAGAAACAAATCGAAGTGA 58.015 30.769 5.77 0.00 0.00 3.41
617 637 8.620533 AAGAAAGAAAGAAACAAATCGAAGTG 57.379 30.769 0.00 0.00 0.00 3.16
618 638 7.915923 GGAAGAAAGAAAGAAACAAATCGAAGT 59.084 33.333 0.00 0.00 0.00 3.01
619 639 7.379797 GGGAAGAAAGAAAGAAACAAATCGAAG 59.620 37.037 0.00 0.00 0.00 3.79
620 640 7.200455 GGGAAGAAAGAAAGAAACAAATCGAA 58.800 34.615 0.00 0.00 0.00 3.71
621 641 6.512741 CGGGAAGAAAGAAAGAAACAAATCGA 60.513 38.462 0.00 0.00 0.00 3.59
622 642 5.625311 CGGGAAGAAAGAAAGAAACAAATCG 59.375 40.000 0.00 0.00 0.00 3.34
623 643 6.637254 GTCGGGAAGAAAGAAAGAAACAAATC 59.363 38.462 0.00 0.00 0.00 2.17
624 644 6.504398 GTCGGGAAGAAAGAAAGAAACAAAT 58.496 36.000 0.00 0.00 0.00 2.32
625 645 5.448089 CGTCGGGAAGAAAGAAAGAAACAAA 60.448 40.000 0.00 0.00 0.00 2.83
626 646 4.034742 CGTCGGGAAGAAAGAAAGAAACAA 59.965 41.667 0.00 0.00 0.00 2.83
627 647 3.558418 CGTCGGGAAGAAAGAAAGAAACA 59.442 43.478 0.00 0.00 0.00 2.83
628 648 3.606384 GCGTCGGGAAGAAAGAAAGAAAC 60.606 47.826 0.00 0.00 0.00 2.78
629 649 2.546789 GCGTCGGGAAGAAAGAAAGAAA 59.453 45.455 0.00 0.00 0.00 2.52
630 650 2.140717 GCGTCGGGAAGAAAGAAAGAA 58.859 47.619 0.00 0.00 0.00 2.52
631 651 1.792006 GCGTCGGGAAGAAAGAAAGA 58.208 50.000 0.00 0.00 0.00 2.52
632 652 0.438830 CGCGTCGGGAAGAAAGAAAG 59.561 55.000 2.62 0.00 0.00 2.62
633 653 0.249573 ACGCGTCGGGAAGAAAGAAA 60.250 50.000 16.98 0.00 0.00 2.52
634 654 0.942410 CACGCGTCGGGAAGAAAGAA 60.942 55.000 9.86 0.00 28.17 2.52
635 655 1.372499 CACGCGTCGGGAAGAAAGA 60.372 57.895 9.86 0.00 28.17 2.52
636 656 3.011760 GCACGCGTCGGGAAGAAAG 62.012 63.158 9.86 0.00 28.17 2.62
637 657 3.039588 GCACGCGTCGGGAAGAAA 61.040 61.111 9.86 0.00 28.17 2.52
671 691 3.242011 AGGGTTAAGACGAGGGTAACAA 58.758 45.455 0.00 0.00 39.74 2.83
672 692 2.893424 AGGGTTAAGACGAGGGTAACA 58.107 47.619 0.00 0.00 39.74 2.41
673 693 3.181482 GCTAGGGTTAAGACGAGGGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
674 694 3.026694 GCTAGGGTTAAGACGAGGGTAA 58.973 50.000 0.00 0.00 0.00 2.85
750 771 2.024414 TCGATTGCCGAGATGAGAGAA 58.976 47.619 0.00 0.00 43.23 2.87
1207 1271 3.803082 CCCGCACCGCTTGACATG 61.803 66.667 0.00 0.00 0.00 3.21
1233 1297 2.202531 GTCGTCGGCGTTAGGTCC 60.203 66.667 10.18 0.00 39.49 4.46
1234 1298 1.513586 CTGTCGTCGGCGTTAGGTC 60.514 63.158 10.18 0.00 39.49 3.85
1235 1299 2.564975 CTGTCGTCGGCGTTAGGT 59.435 61.111 10.18 0.00 39.49 3.08
1253 1317 1.595382 CTCTTTATGGAGGCGGGCG 60.595 63.158 0.00 0.00 0.00 6.13
1258 1322 0.882484 GGCTCGCTCTTTATGGAGGC 60.882 60.000 0.00 0.00 43.39 4.70
1284 1348 3.220999 CTTGCCAGTCCCGTCGTCA 62.221 63.158 0.00 0.00 0.00 4.35
1380 1447 2.706952 CTTGGGGCGTGAAAAGGGGA 62.707 60.000 0.00 0.00 0.00 4.81
1467 1546 2.048222 TCAAGCTCGCCCTTGACG 60.048 61.111 11.84 0.00 44.49 4.35
1474 1553 1.742880 TGTCTGCATCAAGCTCGCC 60.743 57.895 0.00 0.00 45.94 5.54
1482 1561 1.699083 TCCTTTCCAGTGTCTGCATCA 59.301 47.619 0.00 0.00 0.00 3.07
1492 1571 1.604378 CTCCCGCATCCTTTCCAGT 59.396 57.895 0.00 0.00 0.00 4.00
1497 1576 1.609783 CTTCCCTCCCGCATCCTTT 59.390 57.895 0.00 0.00 0.00 3.11
1560 1639 2.350895 CACATGGTCGGGCCTTGA 59.649 61.111 20.01 0.00 43.04 3.02
1569 1648 1.378514 ACGATTGGCCCACATGGTC 60.379 57.895 0.00 0.00 40.11 4.02
1644 1723 3.382832 ACGGAGAAGACCCCAGCG 61.383 66.667 0.00 0.00 0.00 5.18
1647 1726 2.203788 AGCACGGAGAAGACCCCA 60.204 61.111 0.00 0.00 0.00 4.96
1735 1814 9.523168 AACAAGCTACTATAAAAATTACACCCA 57.477 29.630 0.00 0.00 0.00 4.51
1753 1839 6.649557 GCTAACTCTACCAAAAGAACAAGCTA 59.350 38.462 0.00 0.00 0.00 3.32
1758 1844 4.952460 ACGCTAACTCTACCAAAAGAACA 58.048 39.130 0.00 0.00 0.00 3.18
1759 1845 5.919272 AACGCTAACTCTACCAAAAGAAC 57.081 39.130 0.00 0.00 0.00 3.01
1761 1847 6.285990 AGAAAACGCTAACTCTACCAAAAGA 58.714 36.000 0.00 0.00 0.00 2.52
1762 1848 6.541111 AGAAAACGCTAACTCTACCAAAAG 57.459 37.500 0.00 0.00 0.00 2.27
1771 1857 5.351740 AGCCTTCATTAGAAAACGCTAACTC 59.648 40.000 0.00 0.00 33.53 3.01
1778 1864 4.382754 GCAACAAGCCTTCATTAGAAAACG 59.617 41.667 0.00 0.00 37.23 3.60
1796 1882 1.372582 GCATCCTTGATCGAGCAACA 58.627 50.000 12.91 2.15 0.00 3.33
1807 1893 6.257411 GTCTATGAATATCCATCGCATCCTTG 59.743 42.308 0.00 0.00 0.00 3.61
1849 1936 1.218316 GTAGGTTCTCCTGCCACCG 59.782 63.158 0.00 0.00 44.81 4.94
1940 2033 9.244799 CTTAAAGTTGACAACAAATTAGGAACC 57.755 33.333 20.08 0.00 42.18 3.62
2020 2116 8.050778 TCAGGTATGGTTGTATTGACAAATTC 57.949 34.615 0.00 0.00 46.99 2.17
2028 2124 6.386654 GGTTTGTTCAGGTATGGTTGTATTG 58.613 40.000 0.00 0.00 0.00 1.90
2041 2137 3.640967 TCCATTTTCAGGGTTTGTTCAGG 59.359 43.478 0.00 0.00 0.00 3.86
2130 2227 5.873179 TTCGATGTTATTCCCAGAAACAC 57.127 39.130 0.00 0.00 36.06 3.32
2219 2324 5.233263 CCAAAAACCAACGAAAGGTACAATG 59.767 40.000 0.00 0.00 38.76 2.82
2288 2397 4.925068 ACACACTTGTTTGCAGAAGATTC 58.075 39.130 8.68 0.00 28.43 2.52
2322 2431 5.562307 GCTTAATCTCGACTATAGCAACGGA 60.562 44.000 0.00 4.48 0.00 4.69
2381 2494 0.888285 AAGGCAGAGCTCACAGTTGC 60.888 55.000 17.77 16.01 0.00 4.17
2451 2564 3.066481 TGGTTTTATAAAATACCGGCGGC 59.934 43.478 28.71 4.09 38.99 6.53
2552 2669 7.844493 TGAAGAACCTAAACAGGAGTACTAA 57.156 36.000 0.00 0.00 0.00 2.24
2614 2731 3.840124 AGGAGGGACGTTTGGAATATC 57.160 47.619 0.00 0.00 0.00 1.63
2649 2947 4.487019 TGCACAAAACTGCATATGTGATG 58.513 39.130 19.31 6.82 44.52 3.07
2696 2995 7.282224 CCAACCTAACTATACAATGCTAGCAAA 59.718 37.037 23.54 8.19 0.00 3.68
2726 3025 7.537596 CCATGATATGCAGGGGTTTAAATTA 57.462 36.000 0.00 0.00 44.61 1.40
2744 3043 5.303589 CCACTGAATCCAATTTAGCCATGAT 59.696 40.000 0.00 0.00 29.71 2.45
2786 3085 9.696572 AGTGAGTCTATGAACATACTAAGGTAA 57.303 33.333 0.00 0.00 0.00 2.85
2789 3088 7.068839 ACCAGTGAGTCTATGAACATACTAAGG 59.931 40.741 0.00 0.00 0.00 2.69
2793 3092 6.211584 ACAACCAGTGAGTCTATGAACATACT 59.788 38.462 0.00 0.00 0.00 2.12
2841 3152 5.972382 TGTGCAACACGGTCTTTTTATTAAC 59.028 36.000 0.00 0.00 45.67 2.01
2862 3173 8.873830 ACAATTAGAACTGAAGATTACGATGTG 58.126 33.333 0.00 0.00 0.00 3.21
2972 3283 7.556844 TGCCAAACAAATTAACAAGGTTAAGA 58.443 30.769 7.52 0.00 0.00 2.10
2980 3291 6.650807 TGTGTTTCTGCCAAACAAATTAACAA 59.349 30.769 11.54 0.00 41.23 2.83
3020 3331 8.413229 GCCTTGTGAAATATAAAATAGAGCCAA 58.587 33.333 0.00 0.00 0.00 4.52
3035 3346 4.264253 TCATCGATCTTGCCTTGTGAAAT 58.736 39.130 0.00 0.00 0.00 2.17
3138 3449 5.294356 CGAATTCCCCAGAAACGACATATA 58.706 41.667 0.00 0.00 37.75 0.86
3146 3457 1.821216 TCAGCGAATTCCCCAGAAAC 58.179 50.000 0.00 0.00 35.09 2.78
3192 3503 7.307101 GCATGTAAATTGTAACAACCAACAAGG 60.307 37.037 0.00 0.00 38.87 3.61
3302 3615 8.687292 TCTCGCAGGTAATAAAGTCTCTATTA 57.313 34.615 0.00 0.00 0.00 0.98
3306 3619 6.773685 AGTATCTCGCAGGTAATAAAGTCTCT 59.226 38.462 0.00 0.00 0.00 3.10
3307 3620 6.972722 AGTATCTCGCAGGTAATAAAGTCTC 58.027 40.000 0.00 0.00 0.00 3.36
3382 3695 5.944007 GGTGGTTCAACCTCTATGTAACAAT 59.056 40.000 8.40 0.00 39.58 2.71
3416 3733 8.024865 TGTGCAAAATCTGATTCATAAGTGAAG 58.975 33.333 2.92 0.00 46.75 3.02
3490 3810 2.062971 ATGGGGCAATCATGTCAGAC 57.937 50.000 0.00 0.00 30.82 3.51
3529 3849 3.181488 CCTGCAATGTGTCAAGTTGTGAA 60.181 43.478 2.11 0.00 38.23 3.18
3613 3933 1.339929 GGACCTCTAGCTAGCTTCTGC 59.660 57.143 24.88 7.91 40.05 4.26
3618 3938 1.144093 ACATCGGACCTCTAGCTAGCT 59.856 52.381 23.12 23.12 0.00 3.32
3630 3950 1.883084 GCCATGACGGACATCGGAC 60.883 63.158 0.00 0.00 44.45 4.79
3632 3952 1.884464 CTGCCATGACGGACATCGG 60.884 63.158 0.00 0.00 44.45 4.18
3641 3961 0.179936 AAGCTAGCCTCTGCCATGAC 59.820 55.000 12.13 0.00 38.69 3.06
3644 3964 0.179936 GTGAAGCTAGCCTCTGCCAT 59.820 55.000 12.13 0.00 38.69 4.40
3672 3992 0.173708 AAGCTCTGCTACGTGCCTAC 59.826 55.000 0.00 0.00 38.25 3.18
3673 3993 0.173481 CAAGCTCTGCTACGTGCCTA 59.827 55.000 0.00 0.00 38.25 3.93
3674 3994 1.079543 CAAGCTCTGCTACGTGCCT 60.080 57.895 0.00 0.00 38.25 4.75
3675 3995 2.103042 CCAAGCTCTGCTACGTGCC 61.103 63.158 0.00 0.00 38.25 5.01
3676 3996 2.103042 CCCAAGCTCTGCTACGTGC 61.103 63.158 0.00 0.00 38.25 5.34
3677 3997 0.320771 AACCCAAGCTCTGCTACGTG 60.321 55.000 0.00 0.00 38.25 4.49
3698 4020 3.438434 CGCTAGCTATCACTGCTCTATGA 59.562 47.826 13.93 0.00 41.46 2.15
3701 4023 2.155279 CCGCTAGCTATCACTGCTCTA 58.845 52.381 13.93 0.00 41.46 2.43
3720 4042 0.398318 AAGGTCCAACAGCACTCTCC 59.602 55.000 0.00 0.00 0.00 3.71
3885 4214 6.595794 CAGATTTTGCACAAATTGTTCCATC 58.404 36.000 0.00 0.00 0.00 3.51
3886 4215 6.548441 CAGATTTTGCACAAATTGTTCCAT 57.452 33.333 0.00 0.00 0.00 3.41
3925 4254 8.091449 TGACAGTTTGAACCACATTTAGTTTTT 58.909 29.630 0.00 0.00 0.00 1.94
3989 4318 8.617809 GTGCCTATTTCGGTTAATGAAAGAATA 58.382 33.333 10.40 1.00 38.60 1.75
3990 4319 7.416326 GGTGCCTATTTCGGTTAATGAAAGAAT 60.416 37.037 10.40 0.10 38.60 2.40
3991 4320 6.127842 GGTGCCTATTTCGGTTAATGAAAGAA 60.128 38.462 10.40 3.11 38.60 2.52
3992 4321 5.355910 GGTGCCTATTTCGGTTAATGAAAGA 59.644 40.000 10.40 6.28 38.60 2.52
4126 4465 8.622157 TGTAGTATCTGTAGATTCCTTTCTTCG 58.378 37.037 0.00 0.00 36.05 3.79
4148 4487 9.013490 GCATTTAACAGATGCATACTTTTGTAG 57.987 33.333 0.00 0.00 46.96 2.74
4199 4538 9.148104 GTATTTCAGTTACCAGAATTAAGACGT 57.852 33.333 0.00 0.00 0.00 4.34
4277 4616 4.829968 CTGAGAAGACATGTCTGTGGAAT 58.170 43.478 28.52 12.14 40.36 3.01
4438 4777 5.800438 CACATCAAATCTCTCAAGTTGCATG 59.200 40.000 0.00 0.00 0.00 4.06
4495 4834 3.242011 ACCATTTTCTCCACAGGCATTT 58.758 40.909 0.00 0.00 0.00 2.32
4564 4903 4.067896 CTGAAGAGCAAGCAGGAAAACTA 58.932 43.478 0.00 0.00 0.00 2.24
4631 4970 9.093458 AGGATAAACAAAATGAGATTTCTTGGT 57.907 29.630 0.00 0.00 0.00 3.67
4695 5037 3.498397 TCGAAAATCTGCAGAAACCACTC 59.502 43.478 22.50 10.46 0.00 3.51
4730 5075 2.772515 AGGTAAGGGCATCAGAGGTAAC 59.227 50.000 0.00 0.00 0.00 2.50
4731 5076 2.771943 CAGGTAAGGGCATCAGAGGTAA 59.228 50.000 0.00 0.00 0.00 2.85
4746 5091 4.348461 TGGAATGTCACTAACCACAGGTAA 59.652 41.667 0.00 0.00 33.12 2.85
4820 5165 2.054799 ACCCCAGAACTCTAAACTGCA 58.945 47.619 0.00 0.00 0.00 4.41
4822 5167 5.187967 ACAGATACCCCAGAACTCTAAACTG 59.812 44.000 0.00 0.00 0.00 3.16
4840 5185 8.585018 TCACTCAGTGTCATTTTTCTACAGATA 58.415 33.333 4.28 0.00 34.79 1.98
4877 5222 9.323985 GTTCTTTATGATTGCTCTAGATGTTCT 57.676 33.333 0.00 0.00 0.00 3.01
4943 5288 3.616956 TGCTGAAGTGGATGGTAGAAG 57.383 47.619 0.00 0.00 0.00 2.85
4947 5292 1.281577 TGCATGCTGAAGTGGATGGTA 59.718 47.619 20.33 0.00 36.48 3.25
5032 5381 8.579006 AGCACTCTTTGAAAATTCATGTCATAA 58.421 29.630 0.00 0.00 37.00 1.90
5057 5406 2.370281 TTTACTCCTCGCTTGCTGAG 57.630 50.000 7.23 7.23 0.00 3.35
5058 5407 2.831685 TTTTACTCCTCGCTTGCTGA 57.168 45.000 0.00 0.00 0.00 4.26
5059 5408 3.002791 TGATTTTACTCCTCGCTTGCTG 58.997 45.455 0.00 0.00 0.00 4.41
5060 5409 3.334583 TGATTTTACTCCTCGCTTGCT 57.665 42.857 0.00 0.00 0.00 3.91
5061 5410 3.623060 TCATGATTTTACTCCTCGCTTGC 59.377 43.478 0.00 0.00 0.00 4.01
5062 5411 5.582269 TCTTCATGATTTTACTCCTCGCTTG 59.418 40.000 0.00 0.00 0.00 4.01
5063 5412 5.734720 TCTTCATGATTTTACTCCTCGCTT 58.265 37.500 0.00 0.00 0.00 4.68
5064 5413 5.105146 ACTCTTCATGATTTTACTCCTCGCT 60.105 40.000 0.00 0.00 0.00 4.93
5065 5414 5.112686 ACTCTTCATGATTTTACTCCTCGC 58.887 41.667 0.00 0.00 0.00 5.03
5066 5415 5.751028 GGACTCTTCATGATTTTACTCCTCG 59.249 44.000 0.00 0.00 0.00 4.63
5067 5416 6.644347 TGGACTCTTCATGATTTTACTCCTC 58.356 40.000 0.00 0.00 0.00 3.71
5068 5417 6.627087 TGGACTCTTCATGATTTTACTCCT 57.373 37.500 0.00 0.00 0.00 3.69
5069 5418 7.659390 CCTATGGACTCTTCATGATTTTACTCC 59.341 40.741 0.00 0.00 0.00 3.85
5070 5419 7.659390 CCCTATGGACTCTTCATGATTTTACTC 59.341 40.741 0.00 0.00 0.00 2.59
5071 5420 7.127955 ACCCTATGGACTCTTCATGATTTTACT 59.872 37.037 0.00 0.00 34.81 2.24
5072 5421 7.283329 ACCCTATGGACTCTTCATGATTTTAC 58.717 38.462 0.00 0.00 34.81 2.01
5073 5422 7.451731 ACCCTATGGACTCTTCATGATTTTA 57.548 36.000 0.00 0.00 34.81 1.52
5074 5423 6.332976 ACCCTATGGACTCTTCATGATTTT 57.667 37.500 0.00 0.00 34.81 1.82
5075 5424 5.983333 ACCCTATGGACTCTTCATGATTT 57.017 39.130 0.00 0.00 34.81 2.17
5076 5425 8.923838 ATATACCCTATGGACTCTTCATGATT 57.076 34.615 0.00 0.00 34.81 2.57
5078 5427 9.837681 TTTATATACCCTATGGACTCTTCATGA 57.162 33.333 0.00 0.00 34.81 3.07
5079 5428 9.877178 GTTTATATACCCTATGGACTCTTCATG 57.123 37.037 0.00 0.00 34.81 3.07
5080 5429 9.615660 TGTTTATATACCCTATGGACTCTTCAT 57.384 33.333 0.00 0.00 34.81 2.57
5081 5430 9.442062 TTGTTTATATACCCTATGGACTCTTCA 57.558 33.333 0.00 0.00 34.81 3.02
5084 5433 8.322091 GCATTGTTTATATACCCTATGGACTCT 58.678 37.037 0.00 0.00 34.81 3.24
5085 5434 8.322091 AGCATTGTTTATATACCCTATGGACTC 58.678 37.037 0.00 0.00 34.81 3.36
5086 5435 8.219660 AGCATTGTTTATATACCCTATGGACT 57.780 34.615 0.00 0.00 34.81 3.85
5087 5436 8.730680 CAAGCATTGTTTATATACCCTATGGAC 58.269 37.037 0.00 0.00 42.34 4.02
5088 5437 8.862325 CAAGCATTGTTTATATACCCTATGGA 57.138 34.615 0.00 0.00 42.34 3.41
5124 5474 6.042143 CACATGCAAAAAGAAGTACCAAACT 58.958 36.000 0.00 0.00 41.49 2.66
5146 5496 0.888285 AGCTGCTTCAGACTTGCCAC 60.888 55.000 0.00 0.00 32.44 5.01
5147 5497 0.179009 AAGCTGCTTCAGACTTGCCA 60.179 50.000 9.53 0.00 32.44 4.92
5156 5506 3.005050 CACCTTCATCAAAAGCTGCTTCA 59.995 43.478 16.28 3.24 0.00 3.02
5160 5510 1.271656 AGCACCTTCATCAAAAGCTGC 59.728 47.619 0.00 0.00 37.87 5.25
5164 5514 4.202141 TGTTTCCAGCACCTTCATCAAAAG 60.202 41.667 0.00 0.00 0.00 2.27
5226 5576 4.591321 TTGCTACCAAGGATGAAGGATT 57.409 40.909 0.00 0.00 0.00 3.01
5304 5654 7.246674 TGAATAAACGGATGCTCAGATTAAC 57.753 36.000 0.00 0.00 0.00 2.01
5678 6030 6.382919 AGTAAAGGTAGCTAAAATGGGTCA 57.617 37.500 0.00 0.00 0.00 4.02
5713 6065 2.163010 CAGTTTATCACCAAGCAGCAGG 59.837 50.000 0.00 0.00 0.00 4.85
5716 6068 4.216257 TCTTTCAGTTTATCACCAAGCAGC 59.784 41.667 0.00 0.00 0.00 5.25
5938 6291 2.983229 ACTTCAGCCACTTAGCTCATG 58.017 47.619 0.00 0.00 42.61 3.07
5939 6292 3.710209 AACTTCAGCCACTTAGCTCAT 57.290 42.857 0.00 0.00 42.61 2.90
5989 6342 5.880054 TTTGGTCAAAATACTCTAGCAGC 57.120 39.130 0.00 0.00 0.00 5.25
6175 6528 7.950963 GCATGTAGCAGTACCATGTAATGAGTA 60.951 40.741 5.94 0.00 45.90 2.59
6340 6701 9.709495 AATAGCAACACATCAATTTAACACAAT 57.291 25.926 0.00 0.00 0.00 2.71
6342 6703 9.619316 GTAATAGCAACACATCAATTTAACACA 57.381 29.630 0.00 0.00 0.00 3.72
6343 6704 9.840427 AGTAATAGCAACACATCAATTTAACAC 57.160 29.630 0.00 0.00 0.00 3.32
6352 6713 7.686438 ATTGTCAAGTAATAGCAACACATCA 57.314 32.000 0.00 0.00 0.00 3.07
6370 6731 4.707934 TGATGTCGAAGGTAGGTATTGTCA 59.292 41.667 0.00 0.00 0.00 3.58
6395 6756 9.614792 ACTATAATTCTCATACAACAGGTTTCC 57.385 33.333 0.00 0.00 0.00 3.13
6411 6772 8.211629 CACCTTAGCCTAAACCACTATAATTCT 58.788 37.037 0.00 0.00 0.00 2.40
6457 6818 4.082026 CCTTGCTTTAGACCTTCCAATTGG 60.082 45.833 19.08 19.08 0.00 3.16
6522 6888 2.254546 TAGTGCCACAACAGAAGGTG 57.745 50.000 0.00 0.00 34.82 4.00
6546 6912 5.957771 AGCAATATTTCCACTCTCTACCA 57.042 39.130 0.00 0.00 0.00 3.25
6551 6917 7.559590 ACACAATAGCAATATTTCCACTCTC 57.440 36.000 0.00 0.00 0.00 3.20
6610 6978 2.364970 TCTTCGGGGTTGTAGTTTCGAA 59.635 45.455 0.00 0.00 35.72 3.71
6623 6991 4.196971 AGAATAATTCGGTTTCTTCGGGG 58.803 43.478 0.00 0.00 34.02 5.73
6748 7364 6.552445 AGACAGCATGGAACTTATAGAGTT 57.448 37.500 0.00 0.00 45.86 3.01
6751 7367 5.586243 GCAAAGACAGCATGGAACTTATAGA 59.414 40.000 0.00 0.00 43.62 1.98
6755 7371 3.503363 CAGCAAAGACAGCATGGAACTTA 59.497 43.478 0.00 0.00 43.62 2.24
6756 7372 2.295349 CAGCAAAGACAGCATGGAACTT 59.705 45.455 0.00 0.00 43.62 2.66
6773 7389 4.320567 GCACGATCTTCTATACTAGCAGCA 60.321 45.833 0.00 0.00 0.00 4.41
6784 7400 9.031360 GTAAAATACTTCATGCACGATCTTCTA 57.969 33.333 0.00 0.00 0.00 2.10
6844 7460 8.014070 TGATGATCACAAAAATGGCTTCATAT 57.986 30.769 0.00 0.00 0.00 1.78
6900 7522 9.690434 CTACGAGTAGCATTGAAGTTAATTTTC 57.310 33.333 0.00 0.00 0.00 2.29
6906 7528 6.810182 GGAAACTACGAGTAGCATTGAAGTTA 59.190 38.462 9.94 0.00 36.66 2.24
7041 7663 4.202430 GGCGGTATTATAATATCCTGGGGG 60.202 50.000 8.40 0.00 0.00 5.40
7062 7684 3.190874 CAATTCTCTCAAGTAGTCGGGC 58.809 50.000 0.00 0.00 0.00 6.13
7099 7721 0.593128 CAAAGGCTTCCCGTTCACAG 59.407 55.000 0.00 0.00 35.76 3.66
7118 8009 2.968574 TGATACAAGCTCCTCCCAGATC 59.031 50.000 0.00 0.00 0.00 2.75
7185 8076 8.196802 TCTCCTTCAACATTACATGAAATACG 57.803 34.615 0.00 0.00 35.31 3.06
7261 8152 3.879892 GAGCTTCCATGATTCCCTTGTAC 59.120 47.826 0.00 0.00 0.00 2.90
7343 8234 5.515797 AGGAACAAGCAAAGTTACCTTTC 57.484 39.130 0.00 0.00 38.87 2.62
7450 8384 7.148407 CGAGTTTAAATGCCACTATCTCAAAGT 60.148 37.037 0.00 0.00 0.00 2.66
7451 8385 7.148407 ACGAGTTTAAATGCCACTATCTCAAAG 60.148 37.037 0.00 0.00 0.00 2.77
7452 8386 6.653320 ACGAGTTTAAATGCCACTATCTCAAA 59.347 34.615 0.00 0.00 0.00 2.69
7453 8387 6.092122 CACGAGTTTAAATGCCACTATCTCAA 59.908 38.462 0.00 0.00 0.00 3.02
7454 8388 5.580691 CACGAGTTTAAATGCCACTATCTCA 59.419 40.000 0.00 0.00 0.00 3.27
7455 8389 5.006746 CCACGAGTTTAAATGCCACTATCTC 59.993 44.000 0.00 0.00 0.00 2.75
7456 8390 4.876107 CCACGAGTTTAAATGCCACTATCT 59.124 41.667 0.00 0.00 0.00 1.98
7457 8391 4.634443 ACCACGAGTTTAAATGCCACTATC 59.366 41.667 0.00 0.00 0.00 2.08
7458 8392 4.585879 ACCACGAGTTTAAATGCCACTAT 58.414 39.130 0.00 0.00 0.00 2.12
7459 8393 4.010667 ACCACGAGTTTAAATGCCACTA 57.989 40.909 0.00 0.00 0.00 2.74
7460 8394 2.858745 ACCACGAGTTTAAATGCCACT 58.141 42.857 0.00 0.00 0.00 4.00
7461 8395 3.636282 AACCACGAGTTTAAATGCCAC 57.364 42.857 0.00 0.00 33.89 5.01
7512 8446 5.638234 GGGTCCACGTTATAAAGATATCTGC 59.362 44.000 5.86 0.00 0.00 4.26
7570 8507 5.306114 AGGTATGCTGGTTCTATAAACCC 57.694 43.478 4.59 0.00 39.54 4.11
7629 8566 7.013369 GGCAATTACTAGCAGCTACCTAAAAAT 59.987 37.037 0.00 0.00 0.00 1.82
7659 8596 5.503634 AGGTATAGGCATTGCATCATACA 57.496 39.130 19.48 0.00 0.00 2.29
7665 8602 7.148188 CGATATTTCAAGGTATAGGCATTGCAT 60.148 37.037 11.39 5.92 31.15 3.96
7687 8624 0.736636 AACCTCGTGATGCGACGATA 59.263 50.000 0.00 0.00 46.72 2.92
7691 8629 0.802607 GGAGAACCTCGTGATGCGAC 60.803 60.000 0.00 0.00 45.68 5.19
7693 8631 0.803768 CAGGAGAACCTCGTGATGCG 60.804 60.000 10.17 0.00 45.62 4.73
7715 8653 1.342174 CCATAGCATTGCCATGTTCCC 59.658 52.381 14.57 0.00 32.28 3.97
7738 8676 9.769093 GGTATGTGCAAAATTTACTACACTTAG 57.231 33.333 11.61 0.00 0.00 2.18
7742 8680 6.833839 TCGGTATGTGCAAAATTTACTACAC 58.166 36.000 0.00 0.00 0.00 2.90
7747 8685 9.221775 CTCTTTATCGGTATGTGCAAAATTTAC 57.778 33.333 0.00 0.00 0.00 2.01
7755 8693 3.431626 CCACCTCTTTATCGGTATGTGCA 60.432 47.826 0.00 0.00 30.91 4.57
7758 8696 3.039011 AGCCACCTCTTTATCGGTATGT 58.961 45.455 0.00 0.00 30.91 2.29
7829 8782 3.876274 TTCTGGTGTAGCTGACATCTC 57.124 47.619 0.00 0.00 40.17 2.75
7871 8826 6.642950 AGAAACAGAAAATCGTGAGTGTCTAG 59.357 38.462 0.00 0.00 0.00 2.43
7872 8827 6.513180 AGAAACAGAAAATCGTGAGTGTCTA 58.487 36.000 0.00 0.00 0.00 2.59
7873 8828 5.360591 AGAAACAGAAAATCGTGAGTGTCT 58.639 37.500 0.00 0.00 0.00 3.41
7874 8829 5.659048 AGAAACAGAAAATCGTGAGTGTC 57.341 39.130 0.00 0.00 0.00 3.67
7875 8830 6.436843 AAAGAAACAGAAAATCGTGAGTGT 57.563 33.333 0.00 0.00 0.00 3.55
7878 8833 6.141369 GCAGAAAAGAAACAGAAAATCGTGAG 59.859 38.462 0.00 0.00 0.00 3.51
7900 8855 2.228822 AGCGTAAAAATGGGAGTTGCAG 59.771 45.455 0.00 0.00 0.00 4.41
7935 8890 0.180406 GCCGAGTGGGGAACATATGT 59.820 55.000 1.41 1.41 35.78 2.29
7936 8891 0.180171 TGCCGAGTGGGGAACATATG 59.820 55.000 0.00 0.00 35.78 1.78
7967 8922 2.899900 ACCTTATCTGTGACAGCAGTGA 59.100 45.455 7.93 0.00 37.70 3.41
7977 8932 5.827666 ACAAAACGGAAAACCTTATCTGTG 58.172 37.500 0.00 0.00 35.40 3.66
7978 8933 6.270064 CAACAAAACGGAAAACCTTATCTGT 58.730 36.000 0.00 0.00 36.74 3.41
7979 8934 5.174943 GCAACAAAACGGAAAACCTTATCTG 59.825 40.000 0.00 0.00 0.00 2.90
7980 8935 5.163499 TGCAACAAAACGGAAAACCTTATCT 60.163 36.000 0.00 0.00 0.00 1.98
7981 8936 5.044558 TGCAACAAAACGGAAAACCTTATC 58.955 37.500 0.00 0.00 0.00 1.75
7984 8950 3.258228 CTGCAACAAAACGGAAAACCTT 58.742 40.909 0.00 0.00 0.00 3.50
8045 9011 2.283101 TGGGCCCAAGCATGTGAC 60.283 61.111 26.33 0.00 42.56 3.67
8062 9028 3.887716 GCTGCTTTGACATATGGGAATCT 59.112 43.478 7.80 0.00 0.00 2.40
8131 9097 2.543777 TTTTCCGTGTTCCTGGAGAG 57.456 50.000 0.00 0.00 35.26 3.20
8133 9099 3.189287 CAGAATTTTCCGTGTTCCTGGAG 59.811 47.826 0.00 0.00 35.26 3.86
8144 9110 9.672086 TTTGTAATAACTTGACAGAATTTTCCG 57.328 29.630 0.00 0.00 0.00 4.30
8235 9202 6.136541 AGACAAACTAGCCAGAAAACTTTG 57.863 37.500 0.00 0.00 0.00 2.77
8236 9203 5.299531 GGAGACAAACTAGCCAGAAAACTTT 59.700 40.000 0.00 0.00 0.00 2.66
8237 9204 4.822350 GGAGACAAACTAGCCAGAAAACTT 59.178 41.667 0.00 0.00 0.00 2.66
8238 9205 4.103311 AGGAGACAAACTAGCCAGAAAACT 59.897 41.667 0.00 0.00 0.00 2.66
8242 9209 2.567615 GGAGGAGACAAACTAGCCAGAA 59.432 50.000 0.00 0.00 0.00 3.02
8244 9211 1.902508 TGGAGGAGACAAACTAGCCAG 59.097 52.381 0.00 0.00 0.00 4.85
8246 9213 1.066071 GGTGGAGGAGACAAACTAGCC 60.066 57.143 0.00 0.00 0.00 3.93
8247 9214 1.404315 CGGTGGAGGAGACAAACTAGC 60.404 57.143 0.00 0.00 0.00 3.42
8248 9215 1.404315 GCGGTGGAGGAGACAAACTAG 60.404 57.143 0.00 0.00 0.00 2.57
8250 9217 1.371558 GCGGTGGAGGAGACAAACT 59.628 57.895 0.00 0.00 0.00 2.66
8251 9218 1.671379 GGCGGTGGAGGAGACAAAC 60.671 63.158 0.00 0.00 0.00 2.93
8253 9220 1.918293 ATGGCGGTGGAGGAGACAA 60.918 57.895 0.00 0.00 0.00 3.18
8254 9221 2.284625 ATGGCGGTGGAGGAGACA 60.285 61.111 0.00 0.00 0.00 3.41
8255 9222 2.185310 AACATGGCGGTGGAGGAGAC 62.185 60.000 0.00 0.00 0.00 3.36
8264 11338 1.530323 GGAACTAACAACATGGCGGT 58.470 50.000 0.00 0.00 0.00 5.68
8265 11339 0.446222 CGGAACTAACAACATGGCGG 59.554 55.000 0.00 0.00 0.00 6.13
8296 11370 1.351012 GCTGCAGAAGCGCTACATG 59.649 57.895 20.43 11.39 43.45 3.21
8311 11385 3.001414 CAATTCACTCACTGAGGAGCTG 58.999 50.000 10.86 0.02 38.50 4.24
8322 11396 3.503363 GGAGAATGTGCACAATTCACTCA 59.497 43.478 25.72 0.00 35.58 3.41
8355 11429 4.639171 TGACTCGACGCAAGCGCA 62.639 61.111 15.09 0.00 44.19 6.09
8379 11453 2.108157 TGTGTGTTCGCCGAAGCT 59.892 55.556 0.00 0.00 36.60 3.74
8380 11454 2.248431 GTGTGTGTTCGCCGAAGC 59.752 61.111 0.00 0.00 0.00 3.86
8381 11455 2.544359 CGTGTGTGTTCGCCGAAG 59.456 61.111 0.00 0.00 0.00 3.79
8385 11459 2.981977 TTCCTCCGTGTGTGTTCGCC 62.982 60.000 0.00 0.00 0.00 5.54
8388 11462 2.135933 CTTCTTCCTCCGTGTGTGTTC 58.864 52.381 0.00 0.00 0.00 3.18
8401 11475 1.831580 ATGTTCCTGCTGCTTCTTCC 58.168 50.000 0.00 0.00 0.00 3.46
8427 11501 9.414295 TCGTTTGCGCAACTACTATATTTATAT 57.586 29.630 24.99 0.00 38.14 0.86
8428 11502 8.800231 TCGTTTGCGCAACTACTATATTTATA 57.200 30.769 24.99 0.00 38.14 0.98
8432 11506 5.579511 ACTTCGTTTGCGCAACTACTATATT 59.420 36.000 24.99 0.00 38.14 1.28
8434 11508 4.325204 CACTTCGTTTGCGCAACTACTATA 59.675 41.667 24.99 2.72 38.14 1.31
8438 11512 1.259507 TCACTTCGTTTGCGCAACTAC 59.740 47.619 24.99 18.50 38.14 2.73
8464 11538 4.429854 AGGATATCCTTTTCAGCTGTCC 57.570 45.455 19.18 9.79 46.09 4.02
8504 11578 1.996191 GGCTGTGATGAAAGAGACGAC 59.004 52.381 0.00 0.00 0.00 4.34
8536 11610 9.566432 CTCCCTCTGCAAAGAAATATAATAGTT 57.434 33.333 0.00 0.00 0.00 2.24
8537 11611 8.718656 ACTCCCTCTGCAAAGAAATATAATAGT 58.281 33.333 0.00 0.00 0.00 2.12
8539 11613 9.998106 GTACTCCCTCTGCAAAGAAATATAATA 57.002 33.333 0.00 0.00 0.00 0.98
8540 11614 8.718656 AGTACTCCCTCTGCAAAGAAATATAAT 58.281 33.333 0.00 0.00 0.00 1.28
8543 11617 6.567602 AGTACTCCCTCTGCAAAGAAATAT 57.432 37.500 0.00 0.00 0.00 1.28
8544 11618 6.668283 AGTAGTACTCCCTCTGCAAAGAAATA 59.332 38.462 0.00 0.00 0.00 1.40
8545 11619 4.917906 AGTACTCCCTCTGCAAAGAAAT 57.082 40.909 0.00 0.00 0.00 2.17
8546 11620 4.838986 AGTAGTACTCCCTCTGCAAAGAAA 59.161 41.667 0.00 0.00 0.00 2.52
8547 11621 4.417437 AGTAGTACTCCCTCTGCAAAGAA 58.583 43.478 0.00 0.00 0.00 2.52
8548 11622 4.048970 AGTAGTACTCCCTCTGCAAAGA 57.951 45.455 0.00 0.00 0.00 2.52
8549 11623 7.768807 ATATAGTAGTACTCCCTCTGCAAAG 57.231 40.000 5.96 0.00 0.00 2.77
8550 11624 8.005388 AGAATATAGTAGTACTCCCTCTGCAAA 58.995 37.037 5.96 0.00 0.00 3.68
8551 11625 7.527796 AGAATATAGTAGTACTCCCTCTGCAA 58.472 38.462 5.96 0.00 0.00 4.08
8553 11627 7.449086 ACAAGAATATAGTAGTACTCCCTCTGC 59.551 40.741 5.96 0.00 0.00 4.26
8554 11628 8.927675 ACAAGAATATAGTAGTACTCCCTCTG 57.072 38.462 5.96 0.36 0.00 3.35
8594 11912 5.349809 AGAACTAGTTCCAAGTTATAGCGC 58.650 41.667 28.05 0.00 40.33 5.92
8602 11920 4.742012 TGGAGAGAGAACTAGTTCCAAGT 58.258 43.478 28.05 12.75 40.33 3.16
8613 11938 2.161211 GCAGCATTGTTGGAGAGAGAAC 59.839 50.000 2.57 0.00 0.00 3.01
8614 11939 2.224597 TGCAGCATTGTTGGAGAGAGAA 60.225 45.455 2.57 0.00 0.00 2.87
8615 11940 1.348696 TGCAGCATTGTTGGAGAGAGA 59.651 47.619 2.57 0.00 0.00 3.10
8616 11941 1.738350 CTGCAGCATTGTTGGAGAGAG 59.262 52.381 15.34 0.00 36.24 3.20
8621 11946 1.661480 GCACTGCAGCATTGTTGGA 59.339 52.632 15.27 0.00 0.00 3.53
8623 11948 0.388134 GAGGCACTGCAGCATTGTTG 60.388 55.000 15.27 4.32 41.55 3.33
8625 11950 1.228337 TGAGGCACTGCAGCATTGT 60.228 52.632 15.27 0.00 41.55 2.71
8626 11951 1.241990 ACTGAGGCACTGCAGCATTG 61.242 55.000 15.27 8.38 41.55 2.82
8627 11952 0.325933 TACTGAGGCACTGCAGCATT 59.674 50.000 15.27 0.00 41.55 3.56
8629 11954 1.004560 GTACTGAGGCACTGCAGCA 60.005 57.895 15.27 1.78 41.55 4.41
8630 11955 1.743252 GGTACTGAGGCACTGCAGC 60.743 63.158 15.27 0.33 41.55 5.25
8631 11956 1.978473 AGGTACTGAGGCACTGCAG 59.022 57.895 13.48 13.48 41.55 4.41
8632 11957 4.215370 AGGTACTGAGGCACTGCA 57.785 55.556 2.82 0.00 41.55 4.41
8658 12012 1.912826 TAATTCCAACCGGTCGGGGG 61.913 60.000 21.43 14.84 41.60 5.40
8835 12307 6.536582 ACATGATGTGAACTAATGTGCTAGAC 59.463 38.462 0.00 0.00 30.53 2.59
8836 12308 6.643388 ACATGATGTGAACTAATGTGCTAGA 58.357 36.000 0.00 0.00 30.53 2.43
8855 12327 9.419297 GTGTATCACTCAACTAGTTTTACATGA 57.581 33.333 5.07 6.35 36.29 3.07
8929 12401 8.992073 GCTCACAAGAAAATTGGTGATAAAAAT 58.008 29.630 0.00 0.00 39.33 1.82
9106 12746 4.926238 GCATGTATTGGAGGAAGAGTATCG 59.074 45.833 0.00 0.00 42.67 2.92
9154 12794 3.675225 ACGTTGACAGATTCAGTTGATCG 59.325 43.478 0.00 0.00 34.94 3.69
9162 12802 2.143122 GAAGGCACGTTGACAGATTCA 58.857 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.