Multiple sequence alignment - TraesCS1B01G084600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G084600 chr1B 100.000 6238 0 0 1 6238 69534245 69540482 0.000000e+00 11520.0
1 TraesCS1B01G084600 chr1B 85.448 268 32 5 5956 6221 163100380 163100118 7.970000e-69 272.0
2 TraesCS1B01G084600 chr1D 91.984 3942 208 47 2329 6229 49415243 49419117 0.000000e+00 5430.0
3 TraesCS1B01G084600 chr1D 91.595 1404 69 18 931 2325 49412820 49414183 0.000000e+00 1893.0
4 TraesCS1B01G084600 chr1A 90.898 2494 141 41 3766 6227 48977449 48979888 0.000000e+00 3269.0
5 TraesCS1B01G084600 chr1A 94.841 911 40 3 2328 3232 48975925 48976834 0.000000e+00 1415.0
6 TraesCS1B01G084600 chr1A 94.572 829 26 7 931 1752 48966058 48966874 0.000000e+00 1264.0
7 TraesCS1B01G084600 chr1A 91.437 327 13 7 3216 3538 48976851 48977166 9.600000e-118 435.0
8 TraesCS1B01G084600 chr1A 85.671 328 25 11 2001 2325 48966926 48967234 6.030000e-85 326.0
9 TraesCS1B01G084600 chr1A 90.566 212 15 3 3537 3744 48977248 48977458 6.160000e-70 276.0
10 TraesCS1B01G084600 chr1A 84.701 268 34 5 5956 6221 101767630 101767368 1.720000e-65 261.0
11 TraesCS1B01G084600 chr1A 92.982 57 3 1 715 770 48960785 48960841 1.440000e-11 82.4
12 TraesCS1B01G084600 chr5A 93.713 684 39 1 30 709 591495446 591494763 0.000000e+00 1022.0
13 TraesCS1B01G084600 chr4B 89.062 640 67 3 71 709 381396851 381397488 0.000000e+00 791.0
14 TraesCS1B01G084600 chr3D 95.192 416 17 1 1095 1507 272101401 272101816 0.000000e+00 654.0
15 TraesCS1B01G084600 chr7D 94.952 416 17 2 1095 1507 458775289 458774875 0.000000e+00 649.0
16 TraesCS1B01G084600 chr7A 88.462 390 38 4 322 709 709642368 709641984 1.220000e-126 464.0
17 TraesCS1B01G084600 chr7A 92.405 158 12 0 1 158 709642829 709642672 6.290000e-55 226.0
18 TraesCS1B01G084600 chr7A 93.617 47 3 0 2176 2222 54518105 54518151 3.120000e-08 71.3
19 TraesCS1B01G084600 chr7A 84.058 69 7 3 774 841 475978700 475978765 5.220000e-06 63.9
20 TraesCS1B01G084600 chr4A 79.880 333 38 6 71 400 173704764 173705070 3.790000e-52 217.0
21 TraesCS1B01G084600 chr4D 93.269 104 6 1 3330 3432 44831559 44831662 1.080000e-32 152.0
22 TraesCS1B01G084600 chr3A 93.617 47 3 0 2176 2222 746427339 746427385 3.120000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G084600 chr1B 69534245 69540482 6237 False 11520.00 11520 100.0000 1 6238 1 chr1B.!!$F1 6237
1 TraesCS1B01G084600 chr1D 49412820 49419117 6297 False 3661.50 5430 91.7895 931 6229 2 chr1D.!!$F1 5298
2 TraesCS1B01G084600 chr1A 48975925 48979888 3963 False 1348.75 3269 91.9355 2328 6227 4 chr1A.!!$F3 3899
3 TraesCS1B01G084600 chr1A 48966058 48967234 1176 False 795.00 1264 90.1215 931 2325 2 chr1A.!!$F2 1394
4 TraesCS1B01G084600 chr5A 591494763 591495446 683 True 1022.00 1022 93.7130 30 709 1 chr5A.!!$R1 679
5 TraesCS1B01G084600 chr4B 381396851 381397488 637 False 791.00 791 89.0620 71 709 1 chr4B.!!$F1 638
6 TraesCS1B01G084600 chr7A 709641984 709642829 845 True 345.00 464 90.4335 1 709 2 chr7A.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 819 0.037326 CTGTGACGGAAAGCTGGCTA 60.037 55.0 0.00 0.00 0.00 3.93 F
868 1083 0.389426 TTCGAGAGTACGCCAAAGGC 60.389 55.0 0.00 0.00 46.75 4.35 F
2337 3625 0.403655 TCAGCAAGTGCCCATGGTAA 59.596 50.0 11.73 0.00 43.38 2.85 F
2911 4205 0.456995 GTCAGTAGCAGACGTCAGGC 60.457 60.0 19.50 20.12 0.00 4.85 F
3024 4318 1.593196 CACCTGTTCCAAAGAAGCGA 58.407 50.0 0.00 0.00 30.91 4.93 F
4507 5938 1.909700 AGCGCCTTCTCAAATTCCAA 58.090 45.0 2.29 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2549 0.322456 TACCATGGGCACTTGCTGAC 60.322 55.000 18.09 0.00 41.7 3.51 R
2532 3826 1.067142 TCGACCGGACTGATCAAAAGG 60.067 52.381 9.46 0.75 0.0 3.11 R
3663 5077 1.045407 ACGAAGCAGTGTAAGGGTCA 58.955 50.000 0.00 0.00 0.0 4.02 R
4820 6260 1.026718 GGCCATTCCTGTGTTCCTCG 61.027 60.000 0.00 0.00 0.0 4.63 R
5012 6456 2.571528 CTGACGCAGCATACGAGAC 58.428 57.895 0.00 0.00 0.0 3.36 R
5319 6773 0.250295 ACCGACAACATCACCACCAG 60.250 55.000 0.00 0.00 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.749609 GAGCGACAACGGGCGATTAC 61.750 60.000 0.00 0.00 40.15 1.89
63 64 2.753966 CCATTTGGCACTCGCGGAG 61.754 63.158 6.13 5.03 39.92 4.63
80 81 1.940613 GGAGCCGTACCAATCATGAAC 59.059 52.381 0.00 0.00 0.00 3.18
247 248 4.708177 CATCTATTCATTTGGACGGAGGT 58.292 43.478 0.00 0.00 0.00 3.85
250 251 2.773993 TTCATTTGGACGGAGGTACC 57.226 50.000 2.73 2.73 0.00 3.34
413 621 4.824537 TCCAAAAGGTGATCATCGAAACAA 59.175 37.500 0.00 0.00 0.00 2.83
431 639 6.645415 CGAAACAAACTGTCTAGAGGTTACAT 59.355 38.462 10.31 0.96 0.00 2.29
440 648 6.728411 TGTCTAGAGGTTACATAACTCTGGA 58.272 40.000 2.26 2.26 36.47 3.86
500 708 7.020602 GCTTCTTTCAGAAATTGAAGAGCTAC 58.979 38.462 21.14 6.46 46.01 3.58
549 757 2.135933 GCATGTAATCCGGTCAGCTAC 58.864 52.381 0.00 0.00 0.00 3.58
569 777 5.888724 GCTACCTATCCAGCTCATCTATGTA 59.111 44.000 0.00 0.00 34.86 2.29
610 819 0.037326 CTGTGACGGAAAGCTGGCTA 60.037 55.000 0.00 0.00 0.00 3.93
622 831 3.108847 AGCTGGCTAGAAGTTACTCCT 57.891 47.619 0.00 0.00 0.00 3.69
726 941 2.153366 AAAAGCAAGCCACCATTTCG 57.847 45.000 0.00 0.00 0.00 3.46
727 942 1.327303 AAAGCAAGCCACCATTTCGA 58.673 45.000 0.00 0.00 0.00 3.71
728 943 1.549203 AAGCAAGCCACCATTTCGAT 58.451 45.000 0.00 0.00 0.00 3.59
729 944 0.813184 AGCAAGCCACCATTTCGATG 59.187 50.000 0.00 0.00 0.00 3.84
730 945 0.810648 GCAAGCCACCATTTCGATGA 59.189 50.000 0.00 0.00 0.00 2.92
731 946 1.406539 GCAAGCCACCATTTCGATGAT 59.593 47.619 0.00 0.00 0.00 2.45
732 947 2.797087 GCAAGCCACCATTTCGATGATG 60.797 50.000 0.00 0.00 0.00 3.07
733 948 2.424601 CAAGCCACCATTTCGATGATGT 59.575 45.455 8.07 0.00 0.00 3.06
734 949 2.019249 AGCCACCATTTCGATGATGTG 58.981 47.619 8.07 4.28 0.00 3.21
735 950 2.016318 GCCACCATTTCGATGATGTGA 58.984 47.619 8.07 0.00 0.00 3.58
736 951 2.620115 GCCACCATTTCGATGATGTGAT 59.380 45.455 8.07 0.00 0.00 3.06
737 952 3.067180 GCCACCATTTCGATGATGTGATT 59.933 43.478 8.07 0.00 0.00 2.57
738 953 4.440525 GCCACCATTTCGATGATGTGATTT 60.441 41.667 8.07 0.00 0.00 2.17
739 954 5.653507 CCACCATTTCGATGATGTGATTTT 58.346 37.500 8.07 0.00 0.00 1.82
740 955 6.101332 CCACCATTTCGATGATGTGATTTTT 58.899 36.000 8.07 0.00 0.00 1.94
741 956 6.254157 CCACCATTTCGATGATGTGATTTTTC 59.746 38.462 8.07 0.00 0.00 2.29
742 957 7.031372 CACCATTTCGATGATGTGATTTTTCT 58.969 34.615 8.07 0.00 0.00 2.52
743 958 7.219535 CACCATTTCGATGATGTGATTTTTCTC 59.780 37.037 8.07 0.00 0.00 2.87
744 959 7.121759 ACCATTTCGATGATGTGATTTTTCTCT 59.878 33.333 8.07 0.00 0.00 3.10
745 960 7.642978 CCATTTCGATGATGTGATTTTTCTCTC 59.357 37.037 8.07 0.00 0.00 3.20
746 961 7.912056 TTTCGATGATGTGATTTTTCTCTCT 57.088 32.000 0.00 0.00 0.00 3.10
747 962 7.531280 TTCGATGATGTGATTTTTCTCTCTC 57.469 36.000 0.00 0.00 0.00 3.20
748 963 6.871844 TCGATGATGTGATTTTTCTCTCTCT 58.128 36.000 0.00 0.00 0.00 3.10
749 964 8.000780 TCGATGATGTGATTTTTCTCTCTCTA 57.999 34.615 0.00 0.00 0.00 2.43
750 965 8.470002 TCGATGATGTGATTTTTCTCTCTCTAA 58.530 33.333 0.00 0.00 0.00 2.10
751 966 9.258826 CGATGATGTGATTTTTCTCTCTCTAAT 57.741 33.333 0.00 0.00 0.00 1.73
781 996 9.154632 ACATCCCATTTAATCCTATTTAAACCC 57.845 33.333 0.00 0.00 34.75 4.11
782 997 9.153479 CATCCCATTTAATCCTATTTAAACCCA 57.847 33.333 0.00 0.00 34.75 4.51
783 998 8.541899 TCCCATTTAATCCTATTTAAACCCAC 57.458 34.615 0.00 0.00 34.75 4.61
784 999 8.348354 TCCCATTTAATCCTATTTAAACCCACT 58.652 33.333 0.00 0.00 34.75 4.00
785 1000 8.988060 CCCATTTAATCCTATTTAAACCCACTT 58.012 33.333 0.00 0.00 34.75 3.16
792 1007 9.628500 AATCCTATTTAAACCCACTTATCAGTC 57.372 33.333 0.00 0.00 0.00 3.51
793 1008 8.388656 TCCTATTTAAACCCACTTATCAGTCT 57.611 34.615 0.00 0.00 0.00 3.24
794 1009 9.496710 TCCTATTTAAACCCACTTATCAGTCTA 57.503 33.333 0.00 0.00 0.00 2.59
798 1013 8.842358 TTTAAACCCACTTATCAGTCTAACAG 57.158 34.615 0.00 0.00 0.00 3.16
799 1014 6.435292 AAACCCACTTATCAGTCTAACAGT 57.565 37.500 0.00 0.00 0.00 3.55
800 1015 6.435292 AACCCACTTATCAGTCTAACAGTT 57.565 37.500 0.00 0.00 0.00 3.16
801 1016 6.038997 ACCCACTTATCAGTCTAACAGTTC 57.961 41.667 0.00 0.00 0.00 3.01
802 1017 5.542635 ACCCACTTATCAGTCTAACAGTTCA 59.457 40.000 0.00 0.00 0.00 3.18
803 1018 6.042781 ACCCACTTATCAGTCTAACAGTTCAA 59.957 38.462 0.00 0.00 0.00 2.69
804 1019 7.106239 CCCACTTATCAGTCTAACAGTTCAAT 58.894 38.462 0.00 0.00 0.00 2.57
805 1020 7.065085 CCCACTTATCAGTCTAACAGTTCAATG 59.935 40.741 0.00 0.00 0.00 2.82
806 1021 7.819415 CCACTTATCAGTCTAACAGTTCAATGA 59.181 37.037 0.00 0.00 0.00 2.57
807 1022 9.208022 CACTTATCAGTCTAACAGTTCAATGAA 57.792 33.333 0.00 0.00 0.00 2.57
808 1023 9.429359 ACTTATCAGTCTAACAGTTCAATGAAG 57.571 33.333 0.00 0.00 0.00 3.02
809 1024 9.429359 CTTATCAGTCTAACAGTTCAATGAAGT 57.571 33.333 0.00 0.00 0.00 3.01
812 1027 9.950496 ATCAGTCTAACAGTTCAATGAAGTATT 57.050 29.630 2.64 1.14 0.00 1.89
813 1028 9.778741 TCAGTCTAACAGTTCAATGAAGTATTT 57.221 29.630 2.64 3.07 0.00 1.40
818 1033 9.329913 CTAACAGTTCAATGAAGTATTTTTCGG 57.670 33.333 2.64 0.00 0.00 4.30
819 1034 6.677913 ACAGTTCAATGAAGTATTTTTCGGG 58.322 36.000 2.64 0.00 0.00 5.14
820 1035 6.488683 ACAGTTCAATGAAGTATTTTTCGGGA 59.511 34.615 2.64 0.00 0.00 5.14
821 1036 7.023575 CAGTTCAATGAAGTATTTTTCGGGAG 58.976 38.462 2.64 0.00 0.00 4.30
822 1037 6.151144 AGTTCAATGAAGTATTTTTCGGGAGG 59.849 38.462 0.75 0.00 0.00 4.30
823 1038 5.811190 TCAATGAAGTATTTTTCGGGAGGA 58.189 37.500 0.00 0.00 0.00 3.71
824 1039 6.242396 TCAATGAAGTATTTTTCGGGAGGAA 58.758 36.000 0.00 0.00 0.00 3.36
825 1040 6.717540 TCAATGAAGTATTTTTCGGGAGGAAA 59.282 34.615 0.00 0.00 42.75 3.13
826 1041 7.396055 TCAATGAAGTATTTTTCGGGAGGAAAT 59.604 33.333 0.00 0.00 43.82 2.17
827 1042 6.509418 TGAAGTATTTTTCGGGAGGAAATG 57.491 37.500 0.00 0.00 43.82 2.32
828 1043 6.242396 TGAAGTATTTTTCGGGAGGAAATGA 58.758 36.000 0.00 0.00 43.82 2.57
829 1044 6.717540 TGAAGTATTTTTCGGGAGGAAATGAA 59.282 34.615 0.00 0.00 43.82 2.57
830 1045 7.396055 TGAAGTATTTTTCGGGAGGAAATGAAT 59.604 33.333 0.00 0.00 43.82 2.57
831 1046 7.334844 AGTATTTTTCGGGAGGAAATGAATC 57.665 36.000 0.00 0.00 43.82 2.52
832 1047 6.889722 AGTATTTTTCGGGAGGAAATGAATCA 59.110 34.615 0.00 0.00 43.82 2.57
833 1048 6.796785 ATTTTTCGGGAGGAAATGAATCAT 57.203 33.333 0.00 0.00 43.82 2.45
834 1049 5.835113 TTTTCGGGAGGAAATGAATCATC 57.165 39.130 0.00 0.00 43.82 2.92
835 1050 4.502105 TTCGGGAGGAAATGAATCATCA 57.498 40.909 0.00 0.00 40.57 3.07
836 1051 4.502105 TCGGGAGGAAATGAATCATCAA 57.498 40.909 0.00 0.00 39.49 2.57
837 1052 4.454678 TCGGGAGGAAATGAATCATCAAG 58.545 43.478 0.00 0.00 39.49 3.02
838 1053 3.004106 CGGGAGGAAATGAATCATCAAGC 59.996 47.826 0.00 0.00 39.49 4.01
839 1054 4.213513 GGGAGGAAATGAATCATCAAGCT 58.786 43.478 0.00 0.00 39.49 3.74
840 1055 5.380043 GGGAGGAAATGAATCATCAAGCTA 58.620 41.667 0.00 0.00 39.49 3.32
841 1056 5.240403 GGGAGGAAATGAATCATCAAGCTAC 59.760 44.000 0.00 0.00 39.49 3.58
842 1057 5.240403 GGAGGAAATGAATCATCAAGCTACC 59.760 44.000 0.00 0.00 39.49 3.18
843 1058 6.011122 AGGAAATGAATCATCAAGCTACCT 57.989 37.500 0.00 0.00 39.49 3.08
844 1059 6.430007 AGGAAATGAATCATCAAGCTACCTT 58.570 36.000 0.00 0.00 39.49 3.50
845 1060 6.894103 AGGAAATGAATCATCAAGCTACCTTT 59.106 34.615 0.00 0.00 39.49 3.11
846 1061 7.398332 AGGAAATGAATCATCAAGCTACCTTTT 59.602 33.333 0.00 0.00 39.49 2.27
847 1062 8.037166 GGAAATGAATCATCAAGCTACCTTTTT 58.963 33.333 0.00 0.00 39.49 1.94
867 1082 2.074547 TTTCGAGAGTACGCCAAAGG 57.925 50.000 0.00 0.00 0.00 3.11
868 1083 0.389426 TTCGAGAGTACGCCAAAGGC 60.389 55.000 0.00 0.00 46.75 4.35
880 1095 2.529780 CCAAAGGCAGCATTTCAACA 57.470 45.000 1.02 0.00 0.00 3.33
881 1096 2.836262 CCAAAGGCAGCATTTCAACAA 58.164 42.857 1.02 0.00 0.00 2.83
882 1097 3.204526 CCAAAGGCAGCATTTCAACAAA 58.795 40.909 1.02 0.00 0.00 2.83
883 1098 3.626670 CCAAAGGCAGCATTTCAACAAAA 59.373 39.130 1.02 0.00 0.00 2.44
884 1099 4.096081 CCAAAGGCAGCATTTCAACAAAAA 59.904 37.500 1.02 0.00 0.00 1.94
900 1115 3.717842 AAAAACGGGTCTAGCAGCA 57.282 47.368 0.00 0.00 0.00 4.41
901 1116 2.200373 AAAAACGGGTCTAGCAGCAT 57.800 45.000 0.00 0.00 0.00 3.79
902 1117 2.200373 AAAACGGGTCTAGCAGCATT 57.800 45.000 0.00 0.00 0.00 3.56
903 1118 2.200373 AAACGGGTCTAGCAGCATTT 57.800 45.000 0.00 0.00 0.00 2.32
904 1119 1.739067 AACGGGTCTAGCAGCATTTC 58.261 50.000 0.00 0.00 0.00 2.17
905 1120 0.613260 ACGGGTCTAGCAGCATTTCA 59.387 50.000 0.00 0.00 0.00 2.69
906 1121 1.003118 ACGGGTCTAGCAGCATTTCAA 59.997 47.619 0.00 0.00 0.00 2.69
907 1122 1.398390 CGGGTCTAGCAGCATTTCAAC 59.602 52.381 0.00 0.00 0.00 3.18
908 1123 2.436417 GGGTCTAGCAGCATTTCAACA 58.564 47.619 0.00 0.00 0.00 3.33
909 1124 2.819608 GGGTCTAGCAGCATTTCAACAA 59.180 45.455 0.00 0.00 0.00 2.83
910 1125 3.366374 GGGTCTAGCAGCATTTCAACAAC 60.366 47.826 0.00 0.00 0.00 3.32
911 1126 3.253188 GGTCTAGCAGCATTTCAACAACA 59.747 43.478 0.00 0.00 0.00 3.33
912 1127 4.261572 GGTCTAGCAGCATTTCAACAACAA 60.262 41.667 0.00 0.00 0.00 2.83
913 1128 5.280945 GTCTAGCAGCATTTCAACAACAAA 58.719 37.500 0.00 0.00 0.00 2.83
914 1129 5.748152 GTCTAGCAGCATTTCAACAACAAAA 59.252 36.000 0.00 0.00 0.00 2.44
915 1130 6.255453 GTCTAGCAGCATTTCAACAACAAAAA 59.745 34.615 0.00 0.00 0.00 1.94
961 1176 3.678056 ACACGAGCTCAAACTATGGAA 57.322 42.857 15.40 0.00 0.00 3.53
962 1177 4.002906 ACACGAGCTCAAACTATGGAAA 57.997 40.909 15.40 0.00 0.00 3.13
1030 1251 2.029666 CCGGCGTGATCCTCATCC 59.970 66.667 6.01 0.00 0.00 3.51
1038 1259 2.688477 GTGATCCTCATCCTCTCCCTT 58.312 52.381 0.00 0.00 0.00 3.95
1089 1310 3.252284 CTCACCACCCACCAGCCT 61.252 66.667 0.00 0.00 0.00 4.58
1330 1554 2.281484 GCAACCAAGAGACCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
1473 1697 3.636231 CAGGCGGAGTTGGTGGGA 61.636 66.667 0.00 0.00 0.00 4.37
1509 1733 0.534877 TGGCGTGCTTCAATGTGAGT 60.535 50.000 0.00 0.00 0.00 3.41
1512 1736 1.136141 GCGTGCTTCAATGTGAGTCTG 60.136 52.381 0.00 0.00 0.00 3.51
1551 1775 1.346068 GTGGAGCAGAGTTCTTGGACT 59.654 52.381 0.00 0.00 0.00 3.85
1681 1907 5.132502 TCTGCAAATTTGAACTCTTGAGGA 58.867 37.500 22.31 0.00 0.00 3.71
1719 1945 6.263344 CAGTTATCATGCTTTCAGTTGATGG 58.737 40.000 0.00 0.00 31.59 3.51
1729 1955 1.751351 TCAGTTGATGGCGTCTAGAGG 59.249 52.381 8.40 8.10 0.00 3.69
1763 1989 6.163476 GTGTTGGTATATTGACAGTGTCAGA 58.837 40.000 24.25 17.27 43.69 3.27
1780 2006 2.028130 CAGAGTTCGATCTAGCCTGGT 58.972 52.381 0.00 0.00 0.00 4.00
1792 2018 2.639327 GCCTGGTGCCATGGTTGAC 61.639 63.158 14.67 7.83 0.00 3.18
1793 2019 1.228521 CCTGGTGCCATGGTTGACA 60.229 57.895 14.67 6.97 0.00 3.58
1794 2020 0.612732 CCTGGTGCCATGGTTGACAT 60.613 55.000 14.67 0.00 41.57 3.06
1796 2022 1.745087 CTGGTGCCATGGTTGACATAC 59.255 52.381 14.67 1.22 37.84 2.39
1797 2023 1.102978 GGTGCCATGGTTGACATACC 58.897 55.000 14.67 7.16 37.84 2.73
1798 2024 1.340991 GGTGCCATGGTTGACATACCT 60.341 52.381 14.67 0.00 37.84 3.08
1799 2025 1.745087 GTGCCATGGTTGACATACCTG 59.255 52.381 14.67 4.81 37.84 4.00
1800 2026 0.740737 GCCATGGTTGACATACCTGC 59.259 55.000 14.67 0.00 37.84 4.85
1801 2027 1.954733 GCCATGGTTGACATACCTGCA 60.955 52.381 14.67 0.00 37.84 4.41
1802 2028 2.658285 CCATGGTTGACATACCTGCAT 58.342 47.619 2.57 0.00 37.84 3.96
1803 2029 2.620115 CCATGGTTGACATACCTGCATC 59.380 50.000 2.57 0.00 37.84 3.91
1804 2030 2.022764 TGGTTGACATACCTGCATCG 57.977 50.000 0.00 0.00 39.04 3.84
1805 2031 1.277842 TGGTTGACATACCTGCATCGT 59.722 47.619 0.00 0.00 39.04 3.73
1806 2032 1.933853 GGTTGACATACCTGCATCGTC 59.066 52.381 0.00 0.00 35.23 4.20
1807 2033 2.418746 GGTTGACATACCTGCATCGTCT 60.419 50.000 0.00 0.00 35.23 4.18
1808 2034 3.181479 GGTTGACATACCTGCATCGTCTA 60.181 47.826 0.00 0.00 35.23 2.59
1809 2035 4.501571 GGTTGACATACCTGCATCGTCTAT 60.502 45.833 0.00 0.00 35.23 1.98
1810 2036 4.243007 TGACATACCTGCATCGTCTATG 57.757 45.455 0.00 0.00 38.74 2.23
1811 2037 3.636764 TGACATACCTGCATCGTCTATGT 59.363 43.478 0.00 0.00 37.93 2.29
1812 2038 4.099419 TGACATACCTGCATCGTCTATGTT 59.901 41.667 0.00 0.00 37.93 2.71
1813 2039 5.300792 TGACATACCTGCATCGTCTATGTTA 59.699 40.000 0.00 0.00 37.93 2.41
1814 2040 6.156748 ACATACCTGCATCGTCTATGTTAA 57.843 37.500 0.00 0.00 37.93 2.01
1815 2041 6.759272 ACATACCTGCATCGTCTATGTTAAT 58.241 36.000 0.00 0.00 37.93 1.40
1816 2042 6.646653 ACATACCTGCATCGTCTATGTTAATG 59.353 38.462 0.00 0.00 37.93 1.90
1817 2043 3.809832 ACCTGCATCGTCTATGTTAATGC 59.190 43.478 0.00 0.00 42.32 3.56
1818 2044 4.060900 CCTGCATCGTCTATGTTAATGCT 58.939 43.478 7.11 0.00 42.44 3.79
1836 2062 4.897509 TGCTCAAGGATCCCTACATATG 57.102 45.455 8.55 0.00 31.13 1.78
1852 2078 1.595311 TATGGATTGTCCCTGTGGCT 58.405 50.000 0.00 0.00 35.03 4.75
1864 2090 4.816925 GTCCCTGTGGCTTAACATAGATTC 59.183 45.833 0.00 0.00 32.02 2.52
1886 2112 8.980832 ATTCTTCCCTACATATAGATTGTCCT 57.019 34.615 0.00 0.00 0.00 3.85
1893 2119 6.495181 CCTACATATAGATTGTCCTCTGTGGT 59.505 42.308 0.00 0.00 37.07 4.16
1907 2133 1.898472 CTGTGGTCCTGTGTCTGATCT 59.102 52.381 0.00 0.00 0.00 2.75
1953 2179 7.002879 AGCCAACTCAATGCAGAGATTATATT 58.997 34.615 9.77 0.00 38.98 1.28
1954 2180 8.159447 AGCCAACTCAATGCAGAGATTATATTA 58.841 33.333 9.77 0.00 38.98 0.98
2029 2257 9.787435 AACTCAGGTTGTTAATGAATACTTACA 57.213 29.630 0.00 0.00 33.96 2.41
2030 2258 9.959721 ACTCAGGTTGTTAATGAATACTTACAT 57.040 29.630 0.00 0.00 0.00 2.29
2099 2327 4.666512 ACTTTGACTGGGTATGCAAGAAT 58.333 39.130 0.00 0.00 0.00 2.40
2227 2457 8.173775 GTGTTGATCTTCAGTTCATCATAACAG 58.826 37.037 0.00 0.00 30.71 3.16
2228 2458 7.879677 TGTTGATCTTCAGTTCATCATAACAGT 59.120 33.333 0.00 0.00 0.00 3.55
2229 2459 8.386606 GTTGATCTTCAGTTCATCATAACAGTC 58.613 37.037 0.00 0.00 0.00 3.51
2276 2508 1.375523 GAGCGACCGACAAATGGGT 60.376 57.895 0.00 0.00 40.16 4.51
2277 2509 1.635663 GAGCGACCGACAAATGGGTG 61.636 60.000 0.00 0.00 36.99 4.61
2278 2510 2.867472 CGACCGACAAATGGGTGC 59.133 61.111 0.00 0.00 36.99 5.01
2279 2511 2.686816 CGACCGACAAATGGGTGCC 61.687 63.158 0.00 0.00 36.99 5.01
2280 2512 1.602323 GACCGACAAATGGGTGCCA 60.602 57.895 0.00 0.00 36.99 4.92
2282 2514 0.965363 ACCGACAAATGGGTGCCATC 60.965 55.000 0.00 0.00 44.40 3.51
2283 2515 1.429021 CGACAAATGGGTGCCATCG 59.571 57.895 0.00 0.00 44.40 3.84
2292 2524 1.271325 TGGGTGCCATCGCCATAATAG 60.271 52.381 0.00 0.00 44.64 1.73
2296 2528 1.339055 TGCCATCGCCATAATAGCTCC 60.339 52.381 0.00 0.00 0.00 4.70
2297 2529 1.339055 GCCATCGCCATAATAGCTCCA 60.339 52.381 0.00 0.00 0.00 3.86
2315 2547 2.689471 TCCATTAGATGCCATGTTGTGC 59.311 45.455 0.00 0.00 0.00 4.57
2317 2549 1.093972 TTAGATGCCATGTTGTGCCG 58.906 50.000 0.00 0.00 0.00 5.69
2337 3625 0.403655 TCAGCAAGTGCCCATGGTAA 59.596 50.000 11.73 0.00 43.38 2.85
2338 3626 0.527565 CAGCAAGTGCCCATGGTAAC 59.472 55.000 11.73 8.47 43.38 2.50
2342 3630 2.238521 CAAGTGCCCATGGTAACTTGT 58.761 47.619 30.76 12.79 40.84 3.16
2343 3631 2.627699 CAAGTGCCCATGGTAACTTGTT 59.372 45.455 30.76 12.25 40.84 2.83
2348 3636 2.029380 GCCCATGGTAACTTGTTTGGAC 60.029 50.000 11.73 0.00 40.00 4.02
2359 3647 3.192633 ACTTGTTTGGACTTGTGTTGACC 59.807 43.478 0.00 0.00 0.00 4.02
2373 3661 2.206750 GTTGACCGTCTTGTACTTGCA 58.793 47.619 0.00 0.00 0.00 4.08
2409 3702 3.142174 GGATGCCATGTAGGACTTAAGC 58.858 50.000 1.29 0.00 41.22 3.09
2413 3706 1.760613 CCATGTAGGACTTAAGCGGGA 59.239 52.381 1.29 0.00 41.22 5.14
2415 3708 1.188863 TGTAGGACTTAAGCGGGACC 58.811 55.000 1.29 0.00 0.00 4.46
2418 3711 1.993948 GGACTTAAGCGGGACCCCT 60.994 63.158 4.46 0.00 0.00 4.79
2419 3712 1.559965 GGACTTAAGCGGGACCCCTT 61.560 60.000 15.92 15.92 0.00 3.95
2449 3742 7.919385 ATTTAGCCATTCCCTCAACAAATAT 57.081 32.000 0.00 0.00 0.00 1.28
2454 3747 7.729116 AGCCATTCCCTCAACAAATATAAATG 58.271 34.615 0.00 0.00 0.00 2.32
2526 3819 7.141100 AGTTTCTGGTGGTTATGATAAAACG 57.859 36.000 0.00 0.00 31.29 3.60
2532 3826 8.455682 TCTGGTGGTTATGATAAAACGAAATTC 58.544 33.333 0.00 0.00 0.00 2.17
2706 4000 2.693069 ACTGCAATTGTCGAAGGAGAG 58.307 47.619 7.40 0.00 0.00 3.20
2739 4033 2.113774 CTGTGGGCTGGTGCTGAA 59.886 61.111 0.00 0.00 39.59 3.02
2778 4072 0.977627 ATGGGAGGCACGAGACATCA 60.978 55.000 0.00 0.00 0.00 3.07
2828 4122 6.346439 CGCTAAGTGATAAGACTGCATTCATC 60.346 42.308 6.84 2.55 0.00 2.92
2904 4198 0.539051 AGCCATGGTCAGTAGCAGAC 59.461 55.000 14.67 0.00 36.36 3.51
2909 4203 0.881796 TGGTCAGTAGCAGACGTCAG 59.118 55.000 19.50 11.47 36.87 3.51
2911 4205 0.456995 GTCAGTAGCAGACGTCAGGC 60.457 60.000 19.50 20.12 0.00 4.85
2982 4276 4.824479 TTCAGAAGATGTAGACATGGCA 57.176 40.909 0.00 0.00 36.57 4.92
3024 4318 1.593196 CACCTGTTCCAAAGAAGCGA 58.407 50.000 0.00 0.00 30.91 4.93
3036 4330 6.438763 TCCAAAGAAGCGAATTTTTCTTCTC 58.561 36.000 14.20 0.00 43.92 2.87
3166 4460 4.285003 TCACTGGCCTTGTAAGCTTACTTA 59.715 41.667 31.14 20.23 37.33 2.24
3232 4559 9.624697 TTTTGCATCAATATTTCTGTACAGTTC 57.375 29.630 21.99 0.00 0.00 3.01
3293 4620 8.337118 TCTTGGATCTTCCTAATCCTAATTGT 57.663 34.615 3.98 0.00 42.73 2.71
3307 4634 5.321927 TCCTAATTGTTTCTCCAGTTTCCC 58.678 41.667 0.00 0.00 0.00 3.97
3455 4786 5.160641 GTGAAACAACATCACAGTGTGTTT 58.839 37.500 22.29 16.10 45.13 2.83
3502 4833 7.696992 TTGGATTGAGGAATGTTTAGTTACC 57.303 36.000 0.00 0.00 0.00 2.85
3546 4960 4.980573 TGGGTTGTCACTTAGTTGCTTAT 58.019 39.130 0.00 0.00 0.00 1.73
3547 4961 4.759693 TGGGTTGTCACTTAGTTGCTTATG 59.240 41.667 0.00 0.00 0.00 1.90
3553 4967 8.557029 GTTGTCACTTAGTTGCTTATGTAGTTT 58.443 33.333 0.00 0.00 0.00 2.66
3568 4982 9.552114 CTTATGTAGTTTCTTCAAAGCTGATTG 57.448 33.333 0.00 0.00 0.00 2.67
3569 4983 5.762045 TGTAGTTTCTTCAAAGCTGATTGC 58.238 37.500 0.00 0.00 43.29 3.56
3663 5077 6.418057 TGTTTTGGACCTAAGATGCAAATT 57.582 33.333 0.00 0.00 37.26 1.82
3681 5095 2.163818 TTGACCCTTACACTGCTTCG 57.836 50.000 0.00 0.00 0.00 3.79
3695 5109 4.870426 CACTGCTTCGTATTGGACTAACAT 59.130 41.667 0.00 0.00 0.00 2.71
3699 5113 5.580691 TGCTTCGTATTGGACTAACATCTTG 59.419 40.000 0.00 0.00 0.00 3.02
3702 5116 7.277098 GCTTCGTATTGGACTAACATCTTGTTA 59.723 37.037 0.64 0.64 41.45 2.41
3934 5353 6.041296 ACAATGCAGATCTTCTTTTTCCTTGT 59.959 34.615 0.00 0.00 0.00 3.16
3970 5391 8.965819 TCATGGCAGTCATAAAGCTTAAATTAA 58.034 29.630 0.00 0.00 34.12 1.40
4009 5430 6.375455 AGGTGAATTTCTGCGAAGAATAACAT 59.625 34.615 6.69 0.00 0.00 2.71
4015 5436 5.784750 TCTGCGAAGAATAACATGACAAG 57.215 39.130 0.00 0.00 0.00 3.16
4016 5437 5.478407 TCTGCGAAGAATAACATGACAAGA 58.522 37.500 0.00 0.00 0.00 3.02
4067 5493 7.742556 AGCTCTTTATCCATGAGAAATAAGC 57.257 36.000 0.00 9.10 34.59 3.09
4085 5511 9.314321 GAAATAAGCTGCTCAAGTGTTACTATA 57.686 33.333 1.00 0.00 0.00 1.31
4147 5573 9.577110 TTTTTGATCTAAAATGCAGCATAAGAG 57.423 29.630 8.75 6.18 38.03 2.85
4180 5606 7.609532 GGTCAATATGGAATTATGGAGAGAAGG 59.390 40.741 0.00 0.00 0.00 3.46
4261 5687 7.587757 CACTCTAAAGACTGTTGCAATTTGTAC 59.412 37.037 0.59 0.00 0.00 2.90
4285 5711 5.878116 CGTTTGGGGTATGTATTCTCTTTCA 59.122 40.000 0.00 0.00 0.00 2.69
4286 5712 6.373216 CGTTTGGGGTATGTATTCTCTTTCAA 59.627 38.462 0.00 0.00 0.00 2.69
4301 5727 7.744087 TCTCTTTCAAGTTTGCAGCTTATAA 57.256 32.000 5.47 2.13 0.00 0.98
4305 5731 8.796475 TCTTTCAAGTTTGCAGCTTATAAGAAT 58.204 29.630 16.85 0.74 29.61 2.40
4329 5755 5.745312 TCATTTTCCTTGCTCTCTGTAGA 57.255 39.130 0.00 0.00 0.00 2.59
4330 5756 5.482908 TCATTTTCCTTGCTCTCTGTAGAC 58.517 41.667 0.00 0.00 0.00 2.59
4390 5821 6.457122 GGTTTTTGGAAAACCACGGTTTATTG 60.457 38.462 23.47 0.00 46.22 1.90
4398 5829 6.887626 AAACCACGGTTTATTGACTTATGT 57.112 33.333 12.50 0.00 45.26 2.29
4433 5864 4.754322 ACAAACACCTTTGTCATGGTTTC 58.246 39.130 0.00 0.00 45.81 2.78
4442 5873 9.184523 CACCTTTGTCATGGTTTCCTTATTATA 57.815 33.333 0.00 0.00 33.75 0.98
4491 5922 2.752354 TGAAATCACCATGGGTTTAGCG 59.248 45.455 18.09 0.00 31.02 4.26
4507 5938 1.909700 AGCGCCTTCTCAAATTCCAA 58.090 45.000 2.29 0.00 0.00 3.53
4510 5941 2.925563 GCGCCTTCTCAAATTCCAAATG 59.074 45.455 0.00 0.00 0.00 2.32
4521 5952 5.068987 TCAAATTCCAAATGTGGGCTATAGC 59.931 40.000 16.78 16.78 46.01 2.97
4629 6060 7.972277 GCAAAGTACATCATGAAAACAGATGAT 59.028 33.333 0.00 0.00 41.18 2.45
4770 6201 4.283978 TGGTTTATCAGTCCAAAGGTACGA 59.716 41.667 0.00 0.00 0.00 3.43
4820 6260 4.738124 GCAGATTTGCTTTTCTTACCCTC 58.262 43.478 0.00 0.00 46.95 4.30
4894 6334 5.312178 TCCCGGATACATAATTTCAAGGGAT 59.688 40.000 0.73 0.00 39.08 3.85
4932 6372 3.269538 TCAAGGTCACCAAGAACGAAA 57.730 42.857 0.00 0.00 39.61 3.46
4960 6400 7.112452 TCAGGTTCGAAGATAAATCATCTCA 57.888 36.000 0.00 0.00 43.56 3.27
5012 6456 5.186409 ACCCATTGACAAATCTCTTGATTGG 59.814 40.000 0.00 0.00 41.62 3.16
5019 6463 6.037786 ACAAATCTCTTGATTGGTCTCGTA 57.962 37.500 0.00 0.00 41.64 3.43
5026 6470 0.855349 GATTGGTCTCGTATGCTGCG 59.145 55.000 0.00 0.00 0.00 5.18
5048 6492 5.751028 GCGTCAGCTATTTAGACTTGAAGAT 59.249 40.000 0.00 0.00 41.01 2.40
5156 6600 1.816835 TGCGACTCTGATTACGTCCTT 59.183 47.619 0.00 0.00 0.00 3.36
5168 6612 0.981183 ACGTCCTTGCCCACTATCAA 59.019 50.000 0.00 0.00 0.00 2.57
5240 6684 2.400399 GCGGTATGCTGCGAATAACTA 58.600 47.619 0.00 0.00 41.73 2.24
5304 6758 7.193595 AGATTAGTTAGTGTTGTTGTTGTTGC 58.806 34.615 0.00 0.00 0.00 4.17
5313 6767 3.377346 TGTTGTTGTTGCTGTTGTTGT 57.623 38.095 0.00 0.00 0.00 3.32
5316 6770 2.064762 TGTTGTTGCTGTTGTTGTTGC 58.935 42.857 0.00 0.00 0.00 4.17
5319 6773 0.646895 GTTGCTGTTGTTGTTGCTGC 59.353 50.000 0.00 0.00 0.00 5.25
5324 6778 0.173029 TGTTGTTGTTGCTGCTGGTG 59.827 50.000 0.00 0.00 0.00 4.17
5325 6779 0.528249 GTTGTTGTTGCTGCTGGTGG 60.528 55.000 0.00 0.00 0.00 4.61
5326 6780 0.969917 TTGTTGTTGCTGCTGGTGGT 60.970 50.000 0.00 0.00 0.00 4.16
5327 6781 1.066257 GTTGTTGCTGCTGGTGGTG 59.934 57.895 0.00 0.00 0.00 4.17
5328 6782 1.077140 TTGTTGCTGCTGGTGGTGA 60.077 52.632 0.00 0.00 0.00 4.02
5329 6783 0.467844 TTGTTGCTGCTGGTGGTGAT 60.468 50.000 0.00 0.00 0.00 3.06
5330 6784 1.174078 TGTTGCTGCTGGTGGTGATG 61.174 55.000 0.00 0.00 0.00 3.07
5331 6785 1.151221 TTGCTGCTGGTGGTGATGT 59.849 52.632 0.00 0.00 0.00 3.06
5332 6786 0.467844 TTGCTGCTGGTGGTGATGTT 60.468 50.000 0.00 0.00 0.00 2.71
5333 6787 1.174078 TGCTGCTGGTGGTGATGTTG 61.174 55.000 0.00 0.00 0.00 3.33
5334 6788 1.174712 GCTGCTGGTGGTGATGTTGT 61.175 55.000 0.00 0.00 0.00 3.32
5335 6789 0.877071 CTGCTGGTGGTGATGTTGTC 59.123 55.000 0.00 0.00 0.00 3.18
5451 6905 1.499049 GCTTCGTTTCACGGAAGAGT 58.501 50.000 5.06 0.00 42.81 3.24
5456 6910 1.521423 CGTTTCACGGAAGAGTGTGTC 59.479 52.381 0.00 0.00 42.40 3.67
5467 6921 4.381612 GGAAGAGTGTGTCGATCCATGTAA 60.382 45.833 0.00 0.00 36.53 2.41
5468 6922 4.801330 AGAGTGTGTCGATCCATGTAAA 57.199 40.909 0.00 0.00 0.00 2.01
5469 6923 5.147330 AGAGTGTGTCGATCCATGTAAAA 57.853 39.130 0.00 0.00 0.00 1.52
5485 6939 9.253832 TCCATGTAAAATATGGATGTTGTTCTT 57.746 29.630 2.73 0.00 46.84 2.52
5502 6956 9.567848 TGTTGTTCTTAAATGAGACTTTGAAAC 57.432 29.630 0.00 0.00 0.00 2.78
5543 6997 7.427606 CGATCTTGAGCTTTTCATATGTTTGTC 59.572 37.037 1.90 0.00 35.27 3.18
5553 7007 3.389656 TCATATGTTTGTCCCCAGCGATA 59.610 43.478 1.90 0.00 0.00 2.92
5556 7010 2.156098 TGTTTGTCCCCAGCGATAAAC 58.844 47.619 4.57 4.57 41.57 2.01
5558 7012 2.396590 TTGTCCCCAGCGATAAACTC 57.603 50.000 0.00 0.00 0.00 3.01
5606 7060 8.652810 ACTCAAAATTTTCAACTTGAGAATGG 57.347 30.769 17.89 3.13 44.93 3.16
5614 7068 6.968131 TTCAACTTGAGAATGGTAGATTCG 57.032 37.500 0.00 0.00 33.51 3.34
5615 7069 5.419542 TCAACTTGAGAATGGTAGATTCGG 58.580 41.667 0.00 0.00 33.51 4.30
5625 7079 1.940613 GGTAGATTCGGCGAAAATGCT 59.059 47.619 27.40 21.14 34.52 3.79
5627 7081 0.734889 AGATTCGGCGAAAATGCTGG 59.265 50.000 27.40 0.00 41.67 4.85
5662 7116 3.358118 TGATTGAATGAGAAGCATGCCA 58.642 40.909 15.66 5.32 37.28 4.92
5665 7119 2.028876 TGAATGAGAAGCATGCCATGG 58.971 47.619 15.66 7.63 37.28 3.66
5680 7134 3.071874 CCATGGTTTTCAGTGGCTCTA 57.928 47.619 2.57 0.00 0.00 2.43
5693 7147 6.010850 TCAGTGGCTCTAAAAGAGAAGTAGA 58.989 40.000 8.11 0.00 45.07 2.59
5917 7376 2.113986 GCCATAGGCGCTTCCCAT 59.886 61.111 7.64 0.00 39.62 4.00
5950 7409 3.748568 CGAAGAAAGGAAACAGAGGAAGG 59.251 47.826 0.00 0.00 0.00 3.46
5951 7410 3.147553 AGAAAGGAAACAGAGGAAGGC 57.852 47.619 0.00 0.00 0.00 4.35
5952 7411 2.443255 AGAAAGGAAACAGAGGAAGGCA 59.557 45.455 0.00 0.00 0.00 4.75
5953 7412 2.575805 AAGGAAACAGAGGAAGGCAG 57.424 50.000 0.00 0.00 0.00 4.85
5954 7413 0.695347 AGGAAACAGAGGAAGGCAGG 59.305 55.000 0.00 0.00 0.00 4.85
5955 7414 0.322906 GGAAACAGAGGAAGGCAGGG 60.323 60.000 0.00 0.00 0.00 4.45
5956 7415 0.693049 GAAACAGAGGAAGGCAGGGA 59.307 55.000 0.00 0.00 0.00 4.20
5957 7416 0.695347 AAACAGAGGAAGGCAGGGAG 59.305 55.000 0.00 0.00 0.00 4.30
6203 7668 3.934391 GACCTGCCTCAACGTCGGG 62.934 68.421 0.00 0.00 0.00 5.14
6229 7694 2.654385 TCCCCTCCAAGGTGATTGATTT 59.346 45.455 0.00 0.00 41.83 2.17
6230 7695 3.077391 TCCCCTCCAAGGTGATTGATTTT 59.923 43.478 0.00 0.00 41.83 1.82
6231 7696 3.196254 CCCCTCCAAGGTGATTGATTTTG 59.804 47.826 0.00 0.00 41.83 2.44
6232 7697 4.088634 CCCTCCAAGGTGATTGATTTTGA 58.911 43.478 0.00 0.00 41.83 2.69
6233 7698 4.713321 CCCTCCAAGGTGATTGATTTTGAT 59.287 41.667 0.00 0.00 41.83 2.57
6234 7699 5.188359 CCCTCCAAGGTGATTGATTTTGATT 59.812 40.000 0.00 0.00 41.83 2.57
6235 7700 6.103997 CCTCCAAGGTGATTGATTTTGATTG 58.896 40.000 0.00 0.00 41.83 2.67
6236 7701 6.071221 CCTCCAAGGTGATTGATTTTGATTGA 60.071 38.462 0.00 0.00 41.83 2.57
6237 7702 6.690530 TCCAAGGTGATTGATTTTGATTGAC 58.309 36.000 0.00 0.00 41.83 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.435577 AACAGTAATCGCCCGTTGTC 58.564 50.000 0.00 0.00 0.00 3.18
27 28 3.401033 TGGACCACATGACAGTAACAG 57.599 47.619 0.00 0.00 0.00 3.16
63 64 1.670811 CCTGTTCATGATTGGTACGGC 59.329 52.381 0.00 0.00 0.00 5.68
69 70 6.459670 TGATTGATTCCTGTTCATGATTGG 57.540 37.500 0.00 0.00 0.00 3.16
80 81 0.740737 GCCGGGTTGATTGATTCCTG 59.259 55.000 2.18 0.00 0.00 3.86
112 113 2.552315 CGCAAGGGCTTCTTTTGTAAGA 59.448 45.455 0.00 0.00 38.61 2.10
413 621 7.122948 CCAGAGTTATGTAACCTCTAGACAGTT 59.877 40.741 8.17 8.17 36.88 3.16
431 639 3.745799 TGTGGCGATTTTTCCAGAGTTA 58.254 40.909 0.00 0.00 32.15 2.24
440 648 1.995376 AGGGAGTTGTGGCGATTTTT 58.005 45.000 0.00 0.00 0.00 1.94
516 724 7.068103 ACCGGATTACATGCTGAATAATGAAAA 59.932 33.333 9.46 0.00 0.00 2.29
520 728 5.469760 TGACCGGATTACATGCTGAATAATG 59.530 40.000 9.46 0.00 0.00 1.90
521 729 5.620206 TGACCGGATTACATGCTGAATAAT 58.380 37.500 9.46 0.00 0.00 1.28
549 757 7.416213 GCTTAGTACATAGATGAGCTGGATAGG 60.416 44.444 0.00 0.00 0.00 2.57
610 819 4.027437 CCAGGAAGCTAGGAGTAACTTCT 58.973 47.826 0.00 0.00 38.81 2.85
709 924 1.203052 CATCGAAATGGTGGCTTGCTT 59.797 47.619 0.00 0.00 0.00 3.91
710 925 0.813184 CATCGAAATGGTGGCTTGCT 59.187 50.000 0.00 0.00 0.00 3.91
711 926 0.810648 TCATCGAAATGGTGGCTTGC 59.189 50.000 0.00 0.00 33.42 4.01
712 927 2.424601 ACATCATCGAAATGGTGGCTTG 59.575 45.455 13.74 0.00 46.50 4.01
713 928 2.424601 CACATCATCGAAATGGTGGCTT 59.575 45.455 13.74 0.00 46.50 4.35
714 929 2.019249 CACATCATCGAAATGGTGGCT 58.981 47.619 13.74 0.00 46.50 4.75
715 930 2.016318 TCACATCATCGAAATGGTGGC 58.984 47.619 13.74 0.00 46.50 5.01
716 931 4.906065 AATCACATCATCGAAATGGTGG 57.094 40.909 13.74 5.29 46.50 4.61
718 933 7.121759 AGAGAAAAATCACATCATCGAAATGGT 59.878 33.333 13.74 0.00 33.42 3.55
719 934 7.478322 AGAGAAAAATCACATCATCGAAATGG 58.522 34.615 13.74 5.25 33.42 3.16
720 935 8.396390 AGAGAGAAAAATCACATCATCGAAATG 58.604 33.333 9.03 9.03 0.00 2.32
721 936 8.503458 AGAGAGAAAAATCACATCATCGAAAT 57.497 30.769 0.00 0.00 0.00 2.17
722 937 7.821359 AGAGAGAGAAAAATCACATCATCGAAA 59.179 33.333 0.00 0.00 0.00 3.46
723 938 7.326454 AGAGAGAGAAAAATCACATCATCGAA 58.674 34.615 0.00 0.00 0.00 3.71
724 939 6.871844 AGAGAGAGAAAAATCACATCATCGA 58.128 36.000 0.00 0.00 0.00 3.59
725 940 8.640091 TTAGAGAGAGAAAAATCACATCATCG 57.360 34.615 0.00 0.00 0.00 3.84
755 970 9.154632 GGGTTTAAATAGGATTAAATGGGATGT 57.845 33.333 0.00 0.00 37.17 3.06
756 971 9.153479 TGGGTTTAAATAGGATTAAATGGGATG 57.847 33.333 0.00 0.00 37.17 3.51
757 972 9.154632 GTGGGTTTAAATAGGATTAAATGGGAT 57.845 33.333 0.00 0.00 37.17 3.85
758 973 8.348354 AGTGGGTTTAAATAGGATTAAATGGGA 58.652 33.333 0.00 0.00 37.17 4.37
759 974 8.547481 AGTGGGTTTAAATAGGATTAAATGGG 57.453 34.615 0.00 0.00 37.17 4.00
766 981 9.628500 GACTGATAAGTGGGTTTAAATAGGATT 57.372 33.333 0.00 0.00 0.00 3.01
767 982 9.004231 AGACTGATAAGTGGGTTTAAATAGGAT 57.996 33.333 0.00 0.00 0.00 3.24
768 983 8.388656 AGACTGATAAGTGGGTTTAAATAGGA 57.611 34.615 0.00 0.00 0.00 2.94
772 987 9.449719 CTGTTAGACTGATAAGTGGGTTTAAAT 57.550 33.333 0.00 0.00 0.00 1.40
773 988 8.434392 ACTGTTAGACTGATAAGTGGGTTTAAA 58.566 33.333 0.00 0.00 0.00 1.52
774 989 7.970102 ACTGTTAGACTGATAAGTGGGTTTAA 58.030 34.615 0.00 0.00 0.00 1.52
775 990 7.549147 ACTGTTAGACTGATAAGTGGGTTTA 57.451 36.000 0.00 0.00 0.00 2.01
776 991 6.435292 ACTGTTAGACTGATAAGTGGGTTT 57.565 37.500 0.00 0.00 0.00 3.27
777 992 6.042781 TGAACTGTTAGACTGATAAGTGGGTT 59.957 38.462 0.00 0.00 0.00 4.11
778 993 5.542635 TGAACTGTTAGACTGATAAGTGGGT 59.457 40.000 0.00 0.00 0.00 4.51
779 994 6.037786 TGAACTGTTAGACTGATAAGTGGG 57.962 41.667 0.00 0.00 0.00 4.61
780 995 7.819415 TCATTGAACTGTTAGACTGATAAGTGG 59.181 37.037 0.00 0.00 0.00 4.00
781 996 8.763049 TCATTGAACTGTTAGACTGATAAGTG 57.237 34.615 0.00 0.00 0.00 3.16
782 997 9.429359 CTTCATTGAACTGTTAGACTGATAAGT 57.571 33.333 0.00 0.00 0.00 2.24
783 998 9.429359 ACTTCATTGAACTGTTAGACTGATAAG 57.571 33.333 0.00 0.00 0.00 1.73
786 1001 9.950496 AATACTTCATTGAACTGTTAGACTGAT 57.050 29.630 0.00 0.00 0.00 2.90
787 1002 9.778741 AAATACTTCATTGAACTGTTAGACTGA 57.221 29.630 0.00 0.00 0.00 3.41
792 1007 9.329913 CCGAAAAATACTTCATTGAACTGTTAG 57.670 33.333 0.00 0.00 0.00 2.34
793 1008 8.293867 CCCGAAAAATACTTCATTGAACTGTTA 58.706 33.333 0.00 0.00 0.00 2.41
794 1009 7.013846 TCCCGAAAAATACTTCATTGAACTGTT 59.986 33.333 0.00 0.00 0.00 3.16
795 1010 6.488683 TCCCGAAAAATACTTCATTGAACTGT 59.511 34.615 0.00 0.00 0.00 3.55
796 1011 6.908825 TCCCGAAAAATACTTCATTGAACTG 58.091 36.000 0.00 0.00 0.00 3.16
797 1012 6.151144 CCTCCCGAAAAATACTTCATTGAACT 59.849 38.462 0.00 0.00 0.00 3.01
798 1013 6.150474 TCCTCCCGAAAAATACTTCATTGAAC 59.850 38.462 0.00 0.00 0.00 3.18
799 1014 6.242396 TCCTCCCGAAAAATACTTCATTGAA 58.758 36.000 0.00 0.00 0.00 2.69
800 1015 5.811190 TCCTCCCGAAAAATACTTCATTGA 58.189 37.500 0.00 0.00 0.00 2.57
801 1016 6.509418 TTCCTCCCGAAAAATACTTCATTG 57.491 37.500 0.00 0.00 0.00 2.82
802 1017 7.396055 TCATTTCCTCCCGAAAAATACTTCATT 59.604 33.333 0.00 0.00 43.61 2.57
803 1018 6.889722 TCATTTCCTCCCGAAAAATACTTCAT 59.110 34.615 0.00 0.00 43.61 2.57
804 1019 6.242396 TCATTTCCTCCCGAAAAATACTTCA 58.758 36.000 0.00 0.00 43.61 3.02
805 1020 6.753107 TCATTTCCTCCCGAAAAATACTTC 57.247 37.500 0.00 0.00 43.61 3.01
806 1021 7.396055 TGATTCATTTCCTCCCGAAAAATACTT 59.604 33.333 0.00 0.00 43.61 2.24
807 1022 6.889722 TGATTCATTTCCTCCCGAAAAATACT 59.110 34.615 0.00 0.00 43.61 2.12
808 1023 7.095695 TGATTCATTTCCTCCCGAAAAATAC 57.904 36.000 0.00 0.00 43.61 1.89
809 1024 7.559533 TGATGATTCATTTCCTCCCGAAAAATA 59.440 33.333 0.00 0.00 43.61 1.40
810 1025 6.380846 TGATGATTCATTTCCTCCCGAAAAAT 59.619 34.615 0.00 0.00 43.61 1.82
811 1026 5.714333 TGATGATTCATTTCCTCCCGAAAAA 59.286 36.000 0.00 0.00 43.61 1.94
812 1027 5.260424 TGATGATTCATTTCCTCCCGAAAA 58.740 37.500 0.00 0.00 43.61 2.29
813 1028 4.854173 TGATGATTCATTTCCTCCCGAAA 58.146 39.130 0.00 0.00 44.49 3.46
814 1029 4.502105 TGATGATTCATTTCCTCCCGAA 57.498 40.909 0.00 0.00 0.00 4.30
815 1030 4.454678 CTTGATGATTCATTTCCTCCCGA 58.545 43.478 0.00 0.00 0.00 5.14
816 1031 3.004106 GCTTGATGATTCATTTCCTCCCG 59.996 47.826 0.00 0.00 0.00 5.14
817 1032 4.213513 AGCTTGATGATTCATTTCCTCCC 58.786 43.478 0.00 0.00 0.00 4.30
818 1033 5.240403 GGTAGCTTGATGATTCATTTCCTCC 59.760 44.000 0.00 0.00 0.00 4.30
819 1034 6.060788 AGGTAGCTTGATGATTCATTTCCTC 58.939 40.000 0.00 0.00 0.00 3.71
820 1035 6.011122 AGGTAGCTTGATGATTCATTTCCT 57.989 37.500 0.00 0.00 0.00 3.36
821 1036 6.705863 AAGGTAGCTTGATGATTCATTTCC 57.294 37.500 6.33 0.00 0.00 3.13
822 1037 8.992835 AAAAAGGTAGCTTGATGATTCATTTC 57.007 30.769 8.16 0.00 0.00 2.17
846 1061 2.803956 CCTTTGGCGTACTCTCGAAAAA 59.196 45.455 0.00 0.00 0.00 1.94
847 1062 2.409975 CCTTTGGCGTACTCTCGAAAA 58.590 47.619 0.00 0.00 0.00 2.29
848 1063 1.938016 GCCTTTGGCGTACTCTCGAAA 60.938 52.381 0.00 0.00 39.62 3.46
849 1064 0.389426 GCCTTTGGCGTACTCTCGAA 60.389 55.000 0.00 0.00 39.62 3.71
850 1065 1.214589 GCCTTTGGCGTACTCTCGA 59.785 57.895 0.00 0.00 39.62 4.04
851 1066 3.782042 GCCTTTGGCGTACTCTCG 58.218 61.111 0.00 0.00 39.62 4.04
861 1076 2.529780 TGTTGAAATGCTGCCTTTGG 57.470 45.000 7.64 0.00 0.00 3.28
862 1077 4.879104 TTTTGTTGAAATGCTGCCTTTG 57.121 36.364 7.64 0.00 0.00 2.77
882 1097 2.200373 ATGCTGCTAGACCCGTTTTT 57.800 45.000 0.00 0.00 0.00 1.94
883 1098 2.200373 AATGCTGCTAGACCCGTTTT 57.800 45.000 0.00 0.00 0.00 2.43
884 1099 2.084546 GAAATGCTGCTAGACCCGTTT 58.915 47.619 0.00 0.00 0.00 3.60
885 1100 1.003118 TGAAATGCTGCTAGACCCGTT 59.997 47.619 0.00 0.00 0.00 4.44
886 1101 0.613260 TGAAATGCTGCTAGACCCGT 59.387 50.000 0.00 0.00 0.00 5.28
887 1102 1.398390 GTTGAAATGCTGCTAGACCCG 59.602 52.381 0.00 0.00 0.00 5.28
888 1103 2.436417 TGTTGAAATGCTGCTAGACCC 58.564 47.619 0.00 0.00 0.00 4.46
889 1104 3.253188 TGTTGTTGAAATGCTGCTAGACC 59.747 43.478 0.00 0.00 0.00 3.85
890 1105 4.488126 TGTTGTTGAAATGCTGCTAGAC 57.512 40.909 0.00 0.00 0.00 2.59
891 1106 5.512753 TTTGTTGTTGAAATGCTGCTAGA 57.487 34.783 0.00 0.00 0.00 2.43
892 1107 6.586868 TTTTTGTTGTTGAAATGCTGCTAG 57.413 33.333 0.00 0.00 0.00 3.42
912 1127 1.512156 CGCCTGCTACACCCGTTTTT 61.512 55.000 0.00 0.00 0.00 1.94
913 1128 1.964373 CGCCTGCTACACCCGTTTT 60.964 57.895 0.00 0.00 0.00 2.43
914 1129 2.358247 CGCCTGCTACACCCGTTT 60.358 61.111 0.00 0.00 0.00 3.60
920 1135 1.738830 TAAACGGCGCCTGCTACAC 60.739 57.895 26.68 0.00 42.25 2.90
921 1136 1.738830 GTAAACGGCGCCTGCTACA 60.739 57.895 26.68 1.08 42.25 2.74
922 1137 1.293267 TTGTAAACGGCGCCTGCTAC 61.293 55.000 26.68 20.87 42.25 3.58
923 1138 1.004799 TTGTAAACGGCGCCTGCTA 60.005 52.632 26.68 9.55 42.25 3.49
924 1139 2.281208 TTGTAAACGGCGCCTGCT 60.281 55.556 26.68 10.66 42.25 4.24
925 1140 2.127003 GTTGTAAACGGCGCCTGC 60.127 61.111 26.68 10.34 36.92 4.85
1030 1251 4.479993 CAGGGCGGCAAGGGAGAG 62.480 72.222 12.47 0.00 0.00 3.20
1509 1733 2.002977 CATCCCAGAAGGCCCCAGA 61.003 63.158 0.00 0.00 34.51 3.86
1512 1736 3.023735 ACCATCCCAGAAGGCCCC 61.024 66.667 0.00 0.00 34.51 5.80
1681 1907 3.259876 TGATAACTGGTGGTAAGAGCGTT 59.740 43.478 0.00 0.00 0.00 4.84
1719 1945 1.609555 CACCCTGATACCTCTAGACGC 59.390 57.143 0.00 0.00 0.00 5.19
1729 1955 6.482308 GTCAATATACCAACACACCCTGATAC 59.518 42.308 0.00 0.00 0.00 2.24
1763 1989 0.461961 GCACCAGGCTAGATCGAACT 59.538 55.000 0.00 0.00 40.25 3.01
1780 2006 1.954733 GCAGGTATGTCAACCATGGCA 60.955 52.381 13.04 1.19 46.97 4.92
1792 2018 6.401474 GCATTAACATAGACGATGCAGGTATG 60.401 42.308 0.00 0.00 41.92 2.39
1793 2019 5.639506 GCATTAACATAGACGATGCAGGTAT 59.360 40.000 0.00 0.00 41.92 2.73
1794 2020 4.988540 GCATTAACATAGACGATGCAGGTA 59.011 41.667 0.00 0.00 41.92 3.08
1796 2022 4.060900 AGCATTAACATAGACGATGCAGG 58.939 43.478 9.01 0.00 44.08 4.85
1797 2023 4.746611 TGAGCATTAACATAGACGATGCAG 59.253 41.667 9.01 0.00 44.08 4.41
1798 2024 4.692228 TGAGCATTAACATAGACGATGCA 58.308 39.130 9.01 0.00 44.08 3.96
1799 2025 5.333645 CCTTGAGCATTAACATAGACGATGC 60.334 44.000 0.00 0.00 42.47 3.91
1800 2026 5.985530 TCCTTGAGCATTAACATAGACGATG 59.014 40.000 0.00 0.00 41.79 3.84
1801 2027 6.161855 TCCTTGAGCATTAACATAGACGAT 57.838 37.500 0.00 0.00 0.00 3.73
1802 2028 5.592104 TCCTTGAGCATTAACATAGACGA 57.408 39.130 0.00 0.00 0.00 4.20
1803 2029 5.406780 GGATCCTTGAGCATTAACATAGACG 59.593 44.000 3.84 0.00 0.00 4.18
1804 2030 5.703130 GGGATCCTTGAGCATTAACATAGAC 59.297 44.000 12.58 0.00 0.00 2.59
1805 2031 5.608437 AGGGATCCTTGAGCATTAACATAGA 59.392 40.000 12.58 0.00 0.00 1.98
1806 2032 5.874093 AGGGATCCTTGAGCATTAACATAG 58.126 41.667 12.58 0.00 0.00 2.23
1807 2033 5.912149 AGGGATCCTTGAGCATTAACATA 57.088 39.130 12.58 0.00 0.00 2.29
1808 2034 4.803329 AGGGATCCTTGAGCATTAACAT 57.197 40.909 12.58 0.00 0.00 2.71
1809 2035 4.473196 TGTAGGGATCCTTGAGCATTAACA 59.527 41.667 12.58 0.00 34.61 2.41
1810 2036 5.036117 TGTAGGGATCCTTGAGCATTAAC 57.964 43.478 12.58 0.00 34.61 2.01
1811 2037 5.912149 ATGTAGGGATCCTTGAGCATTAA 57.088 39.130 12.58 0.00 34.61 1.40
1812 2038 6.070021 CCATATGTAGGGATCCTTGAGCATTA 60.070 42.308 12.58 1.96 34.61 1.90
1813 2039 5.280882 CCATATGTAGGGATCCTTGAGCATT 60.281 44.000 12.58 0.76 34.61 3.56
1814 2040 4.226846 CCATATGTAGGGATCCTTGAGCAT 59.773 45.833 12.58 12.53 34.61 3.79
1815 2041 3.584406 CCATATGTAGGGATCCTTGAGCA 59.416 47.826 12.58 5.92 34.61 4.26
1816 2042 3.840666 TCCATATGTAGGGATCCTTGAGC 59.159 47.826 12.58 0.00 34.61 4.26
1817 2043 6.013032 ACAATCCATATGTAGGGATCCTTGAG 60.013 42.308 12.58 0.00 45.30 3.02
1818 2044 5.851693 ACAATCCATATGTAGGGATCCTTGA 59.148 40.000 12.58 0.00 45.30 3.02
1836 2062 2.092323 GTTAAGCCACAGGGACAATCC 58.908 52.381 0.00 0.00 35.59 3.01
1864 2090 7.453126 ACAGAGGACAATCTATATGTAGGGAAG 59.547 40.741 0.00 0.00 0.00 3.46
1886 2112 1.895798 GATCAGACACAGGACCACAGA 59.104 52.381 0.00 0.00 0.00 3.41
1893 2119 6.010850 AGTAACTGTAAGATCAGACACAGGA 58.989 40.000 15.81 5.48 42.13 3.86
1907 2133 4.497340 GCTGCAAAGCAACAGTAACTGTAA 60.497 41.667 0.00 0.00 44.62 2.41
2027 2255 9.912634 CAACATACCAGTCTTTTAATGAAATGT 57.087 29.630 0.00 0.00 0.00 2.71
2028 2256 8.863049 GCAACATACCAGTCTTTTAATGAAATG 58.137 33.333 0.00 0.00 0.00 2.32
2029 2257 8.584157 TGCAACATACCAGTCTTTTAATGAAAT 58.416 29.630 0.00 0.00 0.00 2.17
2030 2258 7.946207 TGCAACATACCAGTCTTTTAATGAAA 58.054 30.769 0.00 0.00 0.00 2.69
2031 2259 7.517614 TGCAACATACCAGTCTTTTAATGAA 57.482 32.000 0.00 0.00 0.00 2.57
2032 2260 7.392953 TGATGCAACATACCAGTCTTTTAATGA 59.607 33.333 0.00 0.00 0.00 2.57
2033 2261 7.537715 TGATGCAACATACCAGTCTTTTAATG 58.462 34.615 0.00 0.00 0.00 1.90
2034 2262 7.394359 ACTGATGCAACATACCAGTCTTTTAAT 59.606 33.333 0.00 0.00 33.27 1.40
2035 2263 6.714810 ACTGATGCAACATACCAGTCTTTTAA 59.285 34.615 0.00 0.00 33.27 1.52
2075 2303 2.093306 TGCATACCCAGTCAAAGTCG 57.907 50.000 0.00 0.00 0.00 4.18
2099 2327 7.718314 AGAGAAATACTGCATTATCATCTTGCA 59.282 33.333 11.30 0.00 43.63 4.08
2102 2330 9.053840 CACAGAGAAATACTGCATTATCATCTT 57.946 33.333 11.30 0.00 38.74 2.40
2276 2508 1.339055 GGAGCTATTATGGCGATGGCA 60.339 52.381 1.01 0.00 43.52 4.92
2277 2509 1.339055 TGGAGCTATTATGGCGATGGC 60.339 52.381 0.00 0.00 38.90 4.40
2278 2510 2.768253 TGGAGCTATTATGGCGATGG 57.232 50.000 0.00 0.00 34.52 3.51
2279 2511 5.664457 TCTAATGGAGCTATTATGGCGATG 58.336 41.667 0.00 0.00 34.52 3.84
2280 2512 5.939764 TCTAATGGAGCTATTATGGCGAT 57.060 39.130 0.00 0.00 34.52 4.58
2281 2513 5.664457 CATCTAATGGAGCTATTATGGCGA 58.336 41.667 0.00 0.00 34.52 5.54
2282 2514 4.272018 GCATCTAATGGAGCTATTATGGCG 59.728 45.833 0.00 0.00 34.52 5.69
2283 2515 4.578105 GGCATCTAATGGAGCTATTATGGC 59.422 45.833 0.00 0.00 29.93 4.40
2292 2524 2.954318 ACAACATGGCATCTAATGGAGC 59.046 45.455 0.00 0.00 0.00 4.70
2315 2547 2.360350 ATGGGCACTTGCTGACGG 60.360 61.111 0.38 0.00 41.70 4.79
2317 2549 0.322456 TACCATGGGCACTTGCTGAC 60.322 55.000 18.09 0.00 41.70 3.51
2325 2557 2.288763 CCAAACAAGTTACCATGGGCAC 60.289 50.000 18.09 12.06 0.00 5.01
2337 3625 3.192633 GGTCAACACAAGTCCAAACAAGT 59.807 43.478 0.00 0.00 0.00 3.16
2338 3626 3.730662 CGGTCAACACAAGTCCAAACAAG 60.731 47.826 0.00 0.00 0.00 3.16
2342 3630 2.011222 GACGGTCAACACAAGTCCAAA 58.989 47.619 2.62 0.00 0.00 3.28
2343 3631 1.208535 AGACGGTCAACACAAGTCCAA 59.791 47.619 11.27 0.00 34.18 3.53
2348 3636 3.454375 AGTACAAGACGGTCAACACAAG 58.546 45.455 11.27 0.00 0.00 3.16
2359 3647 2.805671 TGGTCAATGCAAGTACAAGACG 59.194 45.455 0.00 0.00 32.51 4.18
2409 3702 4.070009 GCTAAATTATACAAGGGGTCCCG 58.930 47.826 0.48 0.00 41.95 5.14
2413 3706 6.075315 GGAATGGCTAAATTATACAAGGGGT 58.925 40.000 0.00 0.00 0.00 4.95
2415 3708 6.314917 AGGGAATGGCTAAATTATACAAGGG 58.685 40.000 0.00 0.00 0.00 3.95
2418 3711 7.836685 TGTTGAGGGAATGGCTAAATTATACAA 59.163 33.333 0.00 0.00 0.00 2.41
2419 3712 7.350382 TGTTGAGGGAATGGCTAAATTATACA 58.650 34.615 0.00 0.00 0.00 2.29
2526 3819 4.459337 ACCGGACTGATCAAAAGGAATTTC 59.541 41.667 9.46 0.00 0.00 2.17
2532 3826 1.067142 TCGACCGGACTGATCAAAAGG 60.067 52.381 9.46 0.75 0.00 3.11
2580 3874 5.222130 ACTCCCCTGAATGTTATTCACACTT 60.222 40.000 0.36 0.00 38.61 3.16
2739 4033 5.982890 CATTTACTGTCAAATGGAACCCT 57.017 39.130 11.55 0.00 40.62 4.34
2778 4072 5.365021 AGCTTACCTCTCTGTATGCAAAT 57.635 39.130 10.43 0.00 41.69 2.32
2904 4198 1.333636 AATCCCCAGAGAGCCTGACG 61.334 60.000 0.00 0.00 45.78 4.35
2909 4203 0.182299 CTCCAAATCCCCAGAGAGCC 59.818 60.000 0.00 0.00 0.00 4.70
2911 4205 1.140652 GAGCTCCAAATCCCCAGAGAG 59.859 57.143 0.87 0.00 0.00 3.20
2982 4276 2.225467 GCCTTCAGAAGCTCAACACTT 58.775 47.619 4.41 0.00 0.00 3.16
3024 4318 7.320399 AGAAAACACCAACGAGAAGAAAAATT 58.680 30.769 0.00 0.00 0.00 1.82
3036 4330 3.724374 TCCAGTAGAGAAAACACCAACG 58.276 45.455 0.00 0.00 0.00 4.10
3166 4460 1.609208 AACTGCACTCAAGGCGATTT 58.391 45.000 0.00 0.00 0.00 2.17
3226 4553 6.660521 TCAATCCAATAAGCAATCAGAACTGT 59.339 34.615 1.73 0.00 0.00 3.55
3232 4559 4.534168 CGCTCAATCCAATAAGCAATCAG 58.466 43.478 0.00 0.00 34.39 2.90
3431 4762 4.009675 ACACACTGTGATGTTGTTTCACT 58.990 39.130 16.30 0.00 43.12 3.41
3432 4763 4.355543 ACACACTGTGATGTTGTTTCAC 57.644 40.909 16.30 0.00 43.04 3.18
3433 4764 5.048434 TCAAACACACTGTGATGTTGTTTCA 60.048 36.000 21.02 10.39 39.00 2.69
3434 4765 5.398169 TCAAACACACTGTGATGTTGTTTC 58.602 37.500 21.02 0.00 39.00 2.78
3435 4766 5.384063 TCAAACACACTGTGATGTTGTTT 57.616 34.783 21.02 18.96 39.00 2.83
3436 4767 5.581126 ATCAAACACACTGTGATGTTGTT 57.419 34.783 21.02 15.34 39.00 2.83
3491 4822 6.040209 ACGTGTGGATATGGTAACTAAACA 57.960 37.500 0.00 0.00 37.61 2.83
3502 4833 5.447683 CCATCTGTCAAAACGTGTGGATATG 60.448 44.000 0.00 0.00 0.00 1.78
3546 4960 5.762045 GCAATCAGCTTTGAAGAAACTACA 58.238 37.500 2.23 0.00 41.15 2.74
3663 5077 1.045407 ACGAAGCAGTGTAAGGGTCA 58.955 50.000 0.00 0.00 0.00 4.02
3704 5118 8.860088 GGCCTAATCTATTCATTGGTGTAAAAT 58.140 33.333 0.00 0.00 0.00 1.82
3705 5119 7.836685 TGGCCTAATCTATTCATTGGTGTAAAA 59.163 33.333 3.32 0.00 0.00 1.52
3707 5121 6.905736 TGGCCTAATCTATTCATTGGTGTAA 58.094 36.000 3.32 0.00 0.00 2.41
3776 5194 7.514721 ACTTCAAATGTAGAGGTAGGAAACAA 58.485 34.615 0.00 0.00 0.00 2.83
3905 5324 6.409524 AAAAAGAAGATCTGCATTGTTGGA 57.590 33.333 2.79 0.00 0.00 3.53
3941 5362 5.927281 AAGCTTTATGACTGCCATGAATT 57.073 34.783 0.00 0.00 36.71 2.17
3957 5378 7.288158 TGGTTACCCAGTGTTAATTTAAGCTTT 59.712 33.333 3.20 0.00 35.17 3.51
3970 5391 1.513858 TCACCTTGGTTACCCAGTGT 58.486 50.000 12.91 3.93 43.15 3.55
4042 5463 7.997803 AGCTTATTTCTCATGGATAAAGAGCTT 59.002 33.333 15.25 0.00 32.71 3.74
4044 5465 7.583230 CAGCTTATTTCTCATGGATAAAGAGC 58.417 38.462 0.00 5.83 0.00 4.09
4045 5466 7.444792 AGCAGCTTATTTCTCATGGATAAAGAG 59.555 37.037 0.00 0.00 0.00 2.85
4046 5467 7.285566 AGCAGCTTATTTCTCATGGATAAAGA 58.714 34.615 0.00 0.00 0.00 2.52
4047 5468 7.228108 TGAGCAGCTTATTTCTCATGGATAAAG 59.772 37.037 0.00 0.00 31.35 1.85
4050 5476 6.178607 TGAGCAGCTTATTTCTCATGGATA 57.821 37.500 0.00 0.00 31.35 2.59
4059 5485 6.487689 AGTAACACTTGAGCAGCTTATTTC 57.512 37.500 0.00 0.00 0.00 2.17
4067 5493 7.773149 ACTAGGTTATAGTAACACTTGAGCAG 58.227 38.462 0.00 0.00 0.00 4.24
4128 5554 5.295292 GCTCACTCTTATGCTGCATTTTAGA 59.705 40.000 21.56 18.02 0.00 2.10
4131 5557 3.760151 TGCTCACTCTTATGCTGCATTTT 59.240 39.130 21.56 0.00 0.00 1.82
4147 5573 6.072286 CCATAATTCCATATTGACCTGCTCAC 60.072 42.308 0.00 0.00 0.00 3.51
4180 5606 4.039730 ACTGGATATCACCATACAGCTGAC 59.960 45.833 23.35 0.00 40.08 3.51
4261 5687 5.878116 TGAAAGAGAATACATACCCCAAACG 59.122 40.000 0.00 0.00 0.00 3.60
4285 5711 9.933723 AATGAAATTCTTATAAGCTGCAAACTT 57.066 25.926 7.67 6.84 0.00 2.66
4286 5712 9.933723 AAATGAAATTCTTATAAGCTGCAAACT 57.066 25.926 7.67 0.00 33.67 2.66
4301 5727 6.492772 ACAGAGAGCAAGGAAAATGAAATTCT 59.507 34.615 0.00 0.00 33.67 2.40
4305 5731 6.428159 GTCTACAGAGAGCAAGGAAAATGAAA 59.572 38.462 0.00 0.00 30.20 2.69
4456 5887 9.927668 CATGGTGATTTCAGGTTTACTTAAAAT 57.072 29.630 0.00 0.00 0.00 1.82
4458 5889 7.039363 CCCATGGTGATTTCAGGTTTACTTAAA 60.039 37.037 11.73 0.00 0.00 1.52
4530 5961 4.805272 GCCAGGATGTGCATATATCACTGT 60.805 45.833 0.00 5.70 35.58 3.55
4531 5962 3.688185 GCCAGGATGTGCATATATCACTG 59.312 47.826 0.00 3.34 35.58 3.66
4535 5966 4.074259 TGTTGCCAGGATGTGCATATATC 58.926 43.478 0.00 0.00 40.86 1.63
4629 6060 7.177216 ACTTCATCAATCCTAACAAAAGCATCA 59.823 33.333 0.00 0.00 0.00 3.07
4692 6123 7.458397 ACTGGAAAGACATAAGACCATACAAA 58.542 34.615 0.00 0.00 0.00 2.83
4800 6231 4.906618 TCGAGGGTAAGAAAAGCAAATCT 58.093 39.130 0.00 0.00 0.00 2.40
4801 6232 4.095036 CCTCGAGGGTAAGAAAAGCAAATC 59.905 45.833 24.62 0.00 0.00 2.17
4802 6233 4.010349 CCTCGAGGGTAAGAAAAGCAAAT 58.990 43.478 24.62 0.00 0.00 2.32
4803 6234 3.071892 TCCTCGAGGGTAAGAAAAGCAAA 59.928 43.478 30.80 3.46 36.25 3.68
4804 6235 2.635915 TCCTCGAGGGTAAGAAAAGCAA 59.364 45.455 30.80 3.95 36.25 3.91
4820 6260 1.026718 GGCCATTCCTGTGTTCCTCG 61.027 60.000 0.00 0.00 0.00 4.63
4894 6334 5.105146 ACCTTGAACCACAAATTTAGCAACA 60.105 36.000 0.00 0.00 38.08 3.33
4932 6372 8.043710 AGATGATTTATCTTCGAACCTGAAGTT 58.956 33.333 0.00 0.00 43.68 2.66
4960 6400 8.149973 ACACAAGAAGTTTACGAATGTATTGT 57.850 30.769 0.00 0.00 30.41 2.71
5012 6456 2.571528 CTGACGCAGCATACGAGAC 58.428 57.895 0.00 0.00 0.00 3.36
5026 6470 7.010923 CCACATCTTCAAGTCTAAATAGCTGAC 59.989 40.741 0.00 0.00 0.00 3.51
5048 6492 1.230074 TCCATATTCCCATGGCCACA 58.770 50.000 8.16 0.00 44.47 4.17
5156 6600 1.077787 CGGGCTTTGATAGTGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
5240 6684 1.376543 CCTTGCTGACGCTGATTCAT 58.623 50.000 0.00 0.00 36.97 2.57
5304 6758 0.457035 ACCAGCAGCAACAACAACAG 59.543 50.000 0.00 0.00 0.00 3.16
5313 6767 0.467844 AACATCACCACCAGCAGCAA 60.468 50.000 0.00 0.00 0.00 3.91
5316 6770 0.877071 GACAACATCACCACCAGCAG 59.123 55.000 0.00 0.00 0.00 4.24
5319 6773 0.250295 ACCGACAACATCACCACCAG 60.250 55.000 0.00 0.00 0.00 4.00
5324 6778 1.234615 CCACCACCGACAACATCACC 61.235 60.000 0.00 0.00 0.00 4.02
5325 6779 0.534203 ACCACCACCGACAACATCAC 60.534 55.000 0.00 0.00 0.00 3.06
5326 6780 0.533978 CACCACCACCGACAACATCA 60.534 55.000 0.00 0.00 0.00 3.07
5327 6781 0.534203 ACACCACCACCGACAACATC 60.534 55.000 0.00 0.00 0.00 3.06
5328 6782 0.817634 CACACCACCACCGACAACAT 60.818 55.000 0.00 0.00 0.00 2.71
5329 6783 1.450491 CACACCACCACCGACAACA 60.450 57.895 0.00 0.00 0.00 3.33
5330 6784 2.830285 GCACACCACCACCGACAAC 61.830 63.158 0.00 0.00 0.00 3.32
5331 6785 2.515057 GCACACCACCACCGACAA 60.515 61.111 0.00 0.00 0.00 3.18
5332 6786 3.113514 ATGCACACCACCACCGACA 62.114 57.895 0.00 0.00 0.00 4.35
5333 6787 2.281484 ATGCACACCACCACCGAC 60.281 61.111 0.00 0.00 0.00 4.79
5334 6788 2.031919 GATGCACACCACCACCGA 59.968 61.111 0.00 0.00 0.00 4.69
5335 6789 3.055719 GGATGCACACCACCACCG 61.056 66.667 6.86 0.00 0.00 4.94
5363 6817 1.408702 CACACAAACTTCCCACCCAAG 59.591 52.381 0.00 0.00 0.00 3.61
5364 6818 1.272760 ACACACAAACTTCCCACCCAA 60.273 47.619 0.00 0.00 0.00 4.12
5451 6905 6.587273 TCCATATTTTACATGGATCGACACA 58.413 36.000 0.00 0.00 45.57 3.72
5469 6923 9.911788 AGTCTCATTTAAGAACAACATCCATAT 57.088 29.630 0.00 0.00 0.00 1.78
5513 6967 6.763135 ACATATGAAAAGCTCAAGATCGCTAA 59.237 34.615 10.38 0.00 37.67 3.09
5517 6971 7.246311 ACAAACATATGAAAAGCTCAAGATCG 58.754 34.615 10.38 0.00 37.67 3.69
5543 6997 1.949525 CCATTGAGTTTATCGCTGGGG 59.050 52.381 0.00 0.00 31.51 4.96
5589 7043 7.094805 CCGAATCTACCATTCTCAAGTTGAAAA 60.095 37.037 7.06 0.00 0.00 2.29
5606 7060 2.286418 CCAGCATTTTCGCCGAATCTAC 60.286 50.000 0.00 0.00 0.00 2.59
5613 7067 1.003262 CAACACCAGCATTTTCGCCG 61.003 55.000 0.00 0.00 0.00 6.46
5614 7068 0.313672 TCAACACCAGCATTTTCGCC 59.686 50.000 0.00 0.00 0.00 5.54
5615 7069 2.132740 TTCAACACCAGCATTTTCGC 57.867 45.000 0.00 0.00 0.00 4.70
5625 7079 6.462552 TTCAATCAATCTGTTTCAACACCA 57.537 33.333 0.00 0.00 34.70 4.17
5627 7081 8.077991 TCTCATTCAATCAATCTGTTTCAACAC 58.922 33.333 0.00 0.00 34.70 3.32
5662 7116 5.385198 TCTTTTAGAGCCACTGAAAACCAT 58.615 37.500 0.00 0.00 34.53 3.55
5665 7119 6.261158 ACTTCTCTTTTAGAGCCACTGAAAAC 59.739 38.462 0.00 0.00 42.04 2.43
5670 7124 6.151985 TCTCTACTTCTCTTTTAGAGCCACTG 59.848 42.308 0.00 0.00 42.04 3.66
5827 7281 2.672996 GGCGGGAATGTGTGTGCT 60.673 61.111 0.00 0.00 0.00 4.40
5917 7376 2.171840 CCTTTCTTCGACAGGAGAGGA 58.828 52.381 11.12 0.00 36.35 3.71
5953 7412 2.794820 GATAGCCAGCGCCATCTCCC 62.795 65.000 2.29 0.00 31.20 4.30
5954 7413 1.375268 GATAGCCAGCGCCATCTCC 60.375 63.158 2.29 0.00 31.20 3.71
5955 7414 1.375268 GGATAGCCAGCGCCATCTC 60.375 63.158 2.29 0.00 34.01 2.75
5956 7415 1.840650 AGGATAGCCAGCGCCATCT 60.841 57.895 2.29 0.14 34.01 2.90
5957 7416 1.670406 CAGGATAGCCAGCGCCATC 60.670 63.158 2.29 0.00 36.29 3.51
6185 7650 2.432628 CCGACGTTGAGGCAGGTC 60.433 66.667 3.74 0.00 0.00 3.85
6203 7668 1.379044 CACCTTGGAGGGGATGCAC 60.379 63.158 0.00 0.00 43.10 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.