Multiple sequence alignment - TraesCS1B01G084500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G084500 chr1B 100.000 4244 0 0 1 4244 68943322 68947565 0.000000e+00 7838.0
1 TraesCS1B01G084500 chr1B 79.924 523 47 26 3741 4244 69180772 69181255 8.800000e-87 331.0
2 TraesCS1B01G084500 chr1B 94.271 192 10 1 3 193 656414269 656414078 4.150000e-75 292.0
3 TraesCS1B01G084500 chr1B 78.860 421 40 25 3616 4011 69236249 69236645 5.480000e-59 239.0
4 TraesCS1B01G084500 chr1B 92.424 132 9 1 4026 4156 69236629 69236760 2.010000e-43 187.0
5 TraesCS1B01G084500 chr1B 94.366 71 4 0 223 293 533812852 533812922 4.490000e-20 110.0
6 TraesCS1B01G084500 chr1B 98.361 61 1 0 221 281 33827765 33827825 1.610000e-19 108.0
7 TraesCS1B01G084500 chr1D 91.311 3165 170 49 885 3999 48884310 48887419 0.000000e+00 4224.0
8 TraesCS1B01G084500 chr1D 84.669 724 61 36 3203 3893 48913895 48914601 0.000000e+00 676.0
9 TraesCS1B01G084500 chr1D 82.387 511 25 29 350 817 48883475 48883963 6.660000e-103 385.0
10 TraesCS1B01G084500 chr1D 91.534 189 13 2 3 189 28235900 28235713 1.510000e-64 257.0
11 TraesCS1B01G084500 chr1D 91.935 186 12 3 3 186 443432532 443432348 1.510000e-64 257.0
12 TraesCS1B01G084500 chr1D 85.185 243 19 7 3753 3991 49220194 49220423 2.550000e-57 233.0
13 TraesCS1B01G084500 chr1D 85.463 227 20 5 4027 4244 48905459 48905681 1.540000e-54 224.0
14 TraesCS1B01G084500 chr1D 87.766 188 14 4 3824 4007 48903910 48904092 1.200000e-50 211.0
15 TraesCS1B01G084500 chr1D 87.912 182 13 3 4070 4242 48900883 48901064 5.560000e-49 206.0
16 TraesCS1B01G084500 chr1D 80.989 263 17 18 3741 3991 48900607 48900848 1.210000e-40 178.0
17 TraesCS1B01G084500 chr1A 93.102 2653 123 26 775 3416 48783887 48786490 0.000000e+00 3831.0
18 TraesCS1B01G084500 chr1A 84.226 691 47 30 3589 4244 48789689 48790352 2.170000e-172 616.0
19 TraesCS1B01G084500 chr1A 84.615 234 20 9 3363 3592 48789366 48789587 7.140000e-53 219.0
20 TraesCS1B01G084500 chr1A 80.903 288 22 12 383 656 48783599 48783867 3.350000e-46 196.0
21 TraesCS1B01G084500 chr1A 97.260 73 2 0 3815 3887 48786657 48786729 1.600000e-24 124.0
22 TraesCS1B01G084500 chr1A 94.737 38 0 2 3964 3999 48786753 48786790 1.650000e-04 58.4
23 TraesCS1B01G084500 chr7A 89.787 470 38 4 1574 2043 620859636 620859177 1.020000e-165 593.0
24 TraesCS1B01G084500 chr7B 96.335 191 7 0 1 191 614324461 614324651 8.860000e-82 315.0
25 TraesCS1B01G084500 chr7B 95.812 191 7 1 1 191 679609487 679609298 1.480000e-79 307.0
26 TraesCS1B01G084500 chr7B 97.015 67 1 1 221 286 730377291 730377357 1.250000e-20 111.0
27 TraesCS1B01G084500 chr7B 89.157 83 5 4 223 302 74303004 74302923 2.700000e-17 100.0
28 TraesCS1B01G084500 chr3B 95.337 193 7 2 1 192 732064541 732064350 5.330000e-79 305.0
29 TraesCS1B01G084500 chr7D 74.355 737 145 26 2320 3022 176160304 176161030 1.500000e-69 274.0
30 TraesCS1B01G084500 chr6B 93.011 186 13 0 1 186 680320015 680320200 5.410000e-69 272.0
31 TraesCS1B01G084500 chr6B 92.105 190 13 2 3 191 461957666 461957854 2.520000e-67 267.0
32 TraesCS1B01G084500 chr2A 86.842 190 14 6 3 190 22567708 22567888 7.200000e-48 202.0
33 TraesCS1B01G084500 chr2B 91.026 78 6 1 223 299 751291560 751291483 2.090000e-18 104.0
34 TraesCS1B01G084500 chr2B 91.026 78 6 1 223 299 751292074 751291997 2.090000e-18 104.0
35 TraesCS1B01G084500 chr2B 91.026 78 6 1 223 299 751292732 751292655 2.090000e-18 104.0
36 TraesCS1B01G084500 chr2B 97.826 46 1 0 2451 2496 281873461 281873506 3.520000e-11 80.5
37 TraesCS1B01G084500 chr2B 92.453 53 0 3 2511 2560 281873504 281873555 5.890000e-09 73.1
38 TraesCS1B01G084500 chr6A 91.026 78 4 3 223 299 543213945 543214020 7.510000e-18 102.0
39 TraesCS1B01G084500 chr4B 87.500 88 7 4 221 306 12822435 12822520 9.710000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G084500 chr1B 68943322 68947565 4243 False 7838.000000 7838 100.0000 1 4244 1 chr1B.!!$F2 4243
1 TraesCS1B01G084500 chr1B 69236249 69236760 511 False 213.000000 239 85.6420 3616 4156 2 chr1B.!!$F5 540
2 TraesCS1B01G084500 chr1D 48883475 48887419 3944 False 2304.500000 4224 86.8490 350 3999 2 chr1D.!!$F3 3649
3 TraesCS1B01G084500 chr1D 48913895 48914601 706 False 676.000000 676 84.6690 3203 3893 1 chr1D.!!$F1 690
4 TraesCS1B01G084500 chr1D 48900607 48905681 5074 False 204.750000 224 85.5325 3741 4244 4 chr1D.!!$F4 503
5 TraesCS1B01G084500 chr1A 48783599 48790352 6753 False 840.733333 3831 89.1405 383 4244 6 chr1A.!!$F1 3861
6 TraesCS1B01G084500 chr7D 176160304 176161030 726 False 274.000000 274 74.3550 2320 3022 1 chr7D.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 330 0.037734 TGCGAGTACTCAGGGTCTGA 59.962 55.0 22.37 0.00 38.25 3.27 F
416 417 0.179020 TTCATGTGCCCGATCCATCC 60.179 55.0 0.00 0.00 0.00 3.51 F
909 1251 0.413434 TCTCATCTCCCACCTCACCA 59.587 55.0 0.00 0.00 0.00 4.17 F
952 1294 0.613292 GACTCTCAGCTCACTCCCCA 60.613 60.0 0.00 0.00 0.00 4.96 F
1912 2257 0.737715 GCCGACCAGCTCAGTTACTG 60.738 60.0 5.94 5.94 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1845 0.820891 CCCCAGCCAAATCCAGATCG 60.821 60.000 0.00 0.0 0.00 3.69 R
1647 1992 1.227674 CTCCTTGACATAGCCCGCC 60.228 63.158 0.00 0.0 0.00 6.13 R
1929 2274 1.847818 TATTCCGAGCGACCGAAATG 58.152 50.000 0.00 0.0 0.00 2.32 R
1947 2292 2.046796 TGCGGCGTCTTGGCATTA 60.047 55.556 9.37 0.0 45.16 1.90 R
3813 7372 0.236711 TGGACGACTTCGACGACTTC 59.763 55.000 5.47 0.0 43.02 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.925861 GCAGCTCGCCTGGGGATC 62.926 72.222 14.33 10.21 42.03 3.36
28 29 4.598894 CAGCTCGCCTGGGGATCG 62.599 72.222 14.33 4.82 37.93 3.69
31 32 4.292178 CTCGCCTGGGGATCGCTC 62.292 72.222 14.33 0.75 0.00 5.03
41 42 4.880426 GATCGCTCCCCTCCCCCA 62.880 72.222 0.00 0.00 0.00 4.96
42 43 4.431524 ATCGCTCCCCTCCCCCAA 62.432 66.667 0.00 0.00 0.00 4.12
87 88 3.322466 CCCGGGGCACTTGTCTCT 61.322 66.667 14.71 0.00 0.00 3.10
88 89 2.750350 CCGGGGCACTTGTCTCTT 59.250 61.111 0.00 0.00 0.00 2.85
89 90 1.376037 CCGGGGCACTTGTCTCTTC 60.376 63.158 0.00 0.00 0.00 2.87
90 91 1.376037 CGGGGCACTTGTCTCTTCC 60.376 63.158 0.00 0.00 0.00 3.46
91 92 1.376037 GGGGCACTTGTCTCTTCCG 60.376 63.158 0.00 0.00 0.00 4.30
92 93 2.035442 GGGCACTTGTCTCTTCCGC 61.035 63.158 0.00 0.00 0.00 5.54
93 94 1.004440 GGCACTTGTCTCTTCCGCT 60.004 57.895 0.00 0.00 0.00 5.52
94 95 1.016653 GGCACTTGTCTCTTCCGCTC 61.017 60.000 0.00 0.00 0.00 5.03
95 96 0.037790 GCACTTGTCTCTTCCGCTCT 60.038 55.000 0.00 0.00 0.00 4.09
96 97 1.989430 CACTTGTCTCTTCCGCTCTC 58.011 55.000 0.00 0.00 0.00 3.20
97 98 1.543802 CACTTGTCTCTTCCGCTCTCT 59.456 52.381 0.00 0.00 0.00 3.10
98 99 1.816224 ACTTGTCTCTTCCGCTCTCTC 59.184 52.381 0.00 0.00 0.00 3.20
99 100 2.091541 CTTGTCTCTTCCGCTCTCTCT 58.908 52.381 0.00 0.00 0.00 3.10
100 101 2.208132 TGTCTCTTCCGCTCTCTCTT 57.792 50.000 0.00 0.00 0.00 2.85
101 102 1.815613 TGTCTCTTCCGCTCTCTCTTG 59.184 52.381 0.00 0.00 0.00 3.02
102 103 0.814457 TCTCTTCCGCTCTCTCTTGC 59.186 55.000 0.00 0.00 0.00 4.01
103 104 0.529833 CTCTTCCGCTCTCTCTTGCA 59.470 55.000 0.00 0.00 0.00 4.08
104 105 0.244994 TCTTCCGCTCTCTCTTGCAC 59.755 55.000 0.00 0.00 0.00 4.57
105 106 0.739112 CTTCCGCTCTCTCTTGCACC 60.739 60.000 0.00 0.00 0.00 5.01
106 107 2.492449 TTCCGCTCTCTCTTGCACCG 62.492 60.000 0.00 0.00 0.00 4.94
107 108 2.507992 CGCTCTCTCTTGCACCGG 60.508 66.667 0.00 0.00 0.00 5.28
108 109 2.817396 GCTCTCTCTTGCACCGGC 60.817 66.667 0.00 0.00 41.68 6.13
109 110 2.507992 CTCTCTCTTGCACCGGCG 60.508 66.667 0.00 0.00 45.35 6.46
110 111 2.989253 TCTCTCTTGCACCGGCGA 60.989 61.111 9.30 0.00 45.35 5.54
111 112 2.811317 CTCTCTTGCACCGGCGAC 60.811 66.667 9.30 0.00 45.35 5.19
125 126 2.355363 CGACGAGTCGTTGGGCAA 60.355 61.111 22.89 0.00 46.99 4.52
126 127 1.952133 CGACGAGTCGTTGGGCAAA 60.952 57.895 22.89 0.00 46.99 3.68
127 128 1.860078 GACGAGTCGTTGGGCAAAG 59.140 57.895 20.91 0.00 41.37 2.77
128 129 0.878961 GACGAGTCGTTGGGCAAAGT 60.879 55.000 20.91 0.00 41.37 2.66
129 130 0.878961 ACGAGTCGTTGGGCAAAGTC 60.879 55.000 13.56 0.00 36.35 3.01
130 131 1.860078 GAGTCGTTGGGCAAAGTCG 59.140 57.895 0.00 0.00 0.00 4.18
131 132 0.599204 GAGTCGTTGGGCAAAGTCGA 60.599 55.000 0.00 0.00 0.00 4.20
132 133 0.179067 AGTCGTTGGGCAAAGTCGAA 60.179 50.000 0.00 0.00 32.56 3.71
133 134 0.872388 GTCGTTGGGCAAAGTCGAAT 59.128 50.000 0.00 0.00 32.56 3.34
134 135 1.136057 GTCGTTGGGCAAAGTCGAATC 60.136 52.381 0.00 0.00 32.56 2.52
135 136 0.168128 CGTTGGGCAAAGTCGAATCC 59.832 55.000 0.00 0.00 0.00 3.01
136 137 1.243902 GTTGGGCAAAGTCGAATCCA 58.756 50.000 0.00 0.00 0.00 3.41
137 138 1.068541 GTTGGGCAAAGTCGAATCCAC 60.069 52.381 0.00 0.00 0.00 4.02
138 139 0.953471 TGGGCAAAGTCGAATCCACG 60.953 55.000 0.00 0.00 0.00 4.94
139 140 0.953960 GGGCAAAGTCGAATCCACGT 60.954 55.000 0.00 0.00 34.70 4.49
140 141 0.442699 GGCAAAGTCGAATCCACGTC 59.557 55.000 0.00 0.00 34.70 4.34
141 142 1.144969 GCAAAGTCGAATCCACGTCA 58.855 50.000 0.00 0.00 34.70 4.35
142 143 1.529438 GCAAAGTCGAATCCACGTCAA 59.471 47.619 0.00 0.00 34.70 3.18
143 144 2.032377 GCAAAGTCGAATCCACGTCAAA 60.032 45.455 0.00 0.00 34.70 2.69
144 145 3.541711 CAAAGTCGAATCCACGTCAAAC 58.458 45.455 0.00 0.00 34.70 2.93
145 146 1.792006 AGTCGAATCCACGTCAAACC 58.208 50.000 0.00 0.00 34.70 3.27
146 147 0.794473 GTCGAATCCACGTCAAACCC 59.206 55.000 0.00 0.00 34.70 4.11
147 148 0.682852 TCGAATCCACGTCAAACCCT 59.317 50.000 0.00 0.00 34.70 4.34
148 149 1.894466 TCGAATCCACGTCAAACCCTA 59.106 47.619 0.00 0.00 34.70 3.53
149 150 2.299582 TCGAATCCACGTCAAACCCTAA 59.700 45.455 0.00 0.00 34.70 2.69
150 151 3.055675 TCGAATCCACGTCAAACCCTAAT 60.056 43.478 0.00 0.00 34.70 1.73
151 152 3.308866 CGAATCCACGTCAAACCCTAATC 59.691 47.826 0.00 0.00 0.00 1.75
152 153 2.373540 TCCACGTCAAACCCTAATCG 57.626 50.000 0.00 0.00 0.00 3.34
153 154 0.725117 CCACGTCAAACCCTAATCGC 59.275 55.000 0.00 0.00 0.00 4.58
154 155 0.725117 CACGTCAAACCCTAATCGCC 59.275 55.000 0.00 0.00 0.00 5.54
155 156 0.322322 ACGTCAAACCCTAATCGCCA 59.678 50.000 0.00 0.00 0.00 5.69
156 157 0.725117 CGTCAAACCCTAATCGCCAC 59.275 55.000 0.00 0.00 0.00 5.01
157 158 1.092348 GTCAAACCCTAATCGCCACC 58.908 55.000 0.00 0.00 0.00 4.61
158 159 0.391927 TCAAACCCTAATCGCCACCG 60.392 55.000 0.00 0.00 0.00 4.94
159 160 1.078001 AAACCCTAATCGCCACCGG 60.078 57.895 0.00 0.00 34.56 5.28
160 161 3.692370 AACCCTAATCGCCACCGGC 62.692 63.158 0.00 0.00 46.75 6.13
176 177 3.810896 GCGCCGCCAGGGTTTTAG 61.811 66.667 0.00 0.00 38.44 1.85
177 178 3.131478 CGCCGCCAGGGTTTTAGG 61.131 66.667 0.00 0.00 38.44 2.69
178 179 2.754254 GCCGCCAGGGTTTTAGGG 60.754 66.667 0.00 0.00 38.44 3.53
179 180 2.761160 CCGCCAGGGTTTTAGGGT 59.239 61.111 0.00 0.00 0.00 4.34
180 181 1.076014 CCGCCAGGGTTTTAGGGTT 59.924 57.895 0.00 0.00 0.00 4.11
181 182 0.541063 CCGCCAGGGTTTTAGGGTTT 60.541 55.000 0.00 0.00 0.00 3.27
182 183 0.601057 CGCCAGGGTTTTAGGGTTTG 59.399 55.000 0.00 0.00 0.00 2.93
183 184 0.973632 GCCAGGGTTTTAGGGTTTGG 59.026 55.000 0.00 0.00 0.00 3.28
184 185 1.639722 CCAGGGTTTTAGGGTTTGGG 58.360 55.000 0.00 0.00 0.00 4.12
185 186 1.639722 CAGGGTTTTAGGGTTTGGGG 58.360 55.000 0.00 0.00 0.00 4.96
186 187 0.490017 AGGGTTTTAGGGTTTGGGGG 59.510 55.000 0.00 0.00 0.00 5.40
187 188 0.488220 GGGTTTTAGGGTTTGGGGGA 59.512 55.000 0.00 0.00 0.00 4.81
188 189 1.132785 GGGTTTTAGGGTTTGGGGGAA 60.133 52.381 0.00 0.00 0.00 3.97
189 190 2.692024 GGTTTTAGGGTTTGGGGGAAA 58.308 47.619 0.00 0.00 0.00 3.13
190 191 3.047115 GGTTTTAGGGTTTGGGGGAAAA 58.953 45.455 0.00 0.00 0.00 2.29
191 192 3.181452 GGTTTTAGGGTTTGGGGGAAAAC 60.181 47.826 0.00 0.00 38.96 2.43
192 193 3.710086 TTTAGGGTTTGGGGGAAAACT 57.290 42.857 0.40 0.00 39.51 2.66
193 194 2.687003 TAGGGTTTGGGGGAAAACTG 57.313 50.000 0.40 0.00 39.51 3.16
194 195 0.105194 AGGGTTTGGGGGAAAACTGG 60.105 55.000 0.40 0.00 39.51 4.00
195 196 1.125093 GGGTTTGGGGGAAAACTGGG 61.125 60.000 0.40 0.00 39.51 4.45
196 197 1.752198 GTTTGGGGGAAAACTGGGC 59.248 57.895 0.00 0.00 37.13 5.36
197 198 1.051556 GTTTGGGGGAAAACTGGGCA 61.052 55.000 0.00 0.00 37.13 5.36
198 199 1.051556 TTTGGGGGAAAACTGGGCAC 61.052 55.000 0.00 0.00 0.00 5.01
199 200 2.200092 GGGGGAAAACTGGGCACA 59.800 61.111 0.00 0.00 0.00 4.57
200 201 2.207229 GGGGGAAAACTGGGCACAC 61.207 63.158 0.00 0.00 0.00 3.82
201 202 1.456705 GGGGAAAACTGGGCACACA 60.457 57.895 0.00 0.00 0.00 3.72
202 203 1.739667 GGGAAAACTGGGCACACAC 59.260 57.895 0.00 0.00 0.00 3.82
203 204 1.040339 GGGAAAACTGGGCACACACA 61.040 55.000 0.00 0.00 0.00 3.72
204 205 0.820871 GGAAAACTGGGCACACACAA 59.179 50.000 0.00 0.00 0.00 3.33
205 206 1.470805 GGAAAACTGGGCACACACAAC 60.471 52.381 0.00 0.00 0.00 3.32
206 207 0.172352 AAAACTGGGCACACACAACG 59.828 50.000 0.00 0.00 0.00 4.10
207 208 0.963355 AAACTGGGCACACACAACGT 60.963 50.000 0.00 0.00 0.00 3.99
219 220 2.594529 CACAACGTGCTATGTGGTTC 57.405 50.000 9.73 0.00 42.46 3.62
220 221 2.143122 CACAACGTGCTATGTGGTTCT 58.857 47.619 9.73 0.00 42.46 3.01
221 222 2.157668 CACAACGTGCTATGTGGTTCTC 59.842 50.000 9.73 0.00 42.46 2.87
222 223 1.390123 CAACGTGCTATGTGGTTCTCG 59.610 52.381 0.00 0.00 0.00 4.04
223 224 0.885879 ACGTGCTATGTGGTTCTCGA 59.114 50.000 0.00 0.00 0.00 4.04
224 225 1.135373 ACGTGCTATGTGGTTCTCGAG 60.135 52.381 5.93 5.93 0.00 4.04
225 226 1.799181 CGTGCTATGTGGTTCTCGAGG 60.799 57.143 13.56 0.00 0.00 4.63
226 227 1.476891 GTGCTATGTGGTTCTCGAGGA 59.523 52.381 13.56 0.00 0.00 3.71
227 228 1.476891 TGCTATGTGGTTCTCGAGGAC 59.523 52.381 16.04 16.04 0.00 3.85
228 229 1.751924 GCTATGTGGTTCTCGAGGACT 59.248 52.381 22.99 6.20 0.00 3.85
229 230 2.166664 GCTATGTGGTTCTCGAGGACTT 59.833 50.000 22.99 8.73 0.00 3.01
230 231 2.751166 ATGTGGTTCTCGAGGACTTG 57.249 50.000 22.99 0.00 0.00 3.16
231 232 1.410004 TGTGGTTCTCGAGGACTTGT 58.590 50.000 22.99 0.00 0.00 3.16
232 233 1.068588 TGTGGTTCTCGAGGACTTGTG 59.931 52.381 22.99 0.00 0.00 3.33
233 234 0.679505 TGGTTCTCGAGGACTTGTGG 59.320 55.000 22.99 0.00 0.00 4.17
234 235 0.670854 GGTTCTCGAGGACTTGTGGC 60.671 60.000 22.99 1.76 0.00 5.01
235 236 0.670854 GTTCTCGAGGACTTGTGGCC 60.671 60.000 17.05 0.00 0.00 5.36
236 237 0.832135 TTCTCGAGGACTTGTGGCCT 60.832 55.000 13.56 0.00 37.18 5.19
237 238 1.216710 CTCGAGGACTTGTGGCCTC 59.783 63.158 3.32 7.83 45.73 4.70
238 239 1.228894 TCGAGGACTTGTGGCCTCT 60.229 57.895 15.05 0.00 46.75 3.69
239 240 1.216710 CGAGGACTTGTGGCCTCTC 59.783 63.158 15.05 0.00 46.75 3.20
240 241 1.216710 GAGGACTTGTGGCCTCTCG 59.783 63.158 10.47 0.00 45.72 4.04
241 242 1.228894 AGGACTTGTGGCCTCTCGA 60.229 57.895 3.32 0.00 0.00 4.04
242 243 1.079750 GGACTTGTGGCCTCTCGAC 60.080 63.158 3.32 0.00 0.00 4.20
243 244 1.536943 GGACTTGTGGCCTCTCGACT 61.537 60.000 3.32 0.00 0.00 4.18
244 245 0.389166 GACTTGTGGCCTCTCGACTG 60.389 60.000 3.32 0.00 0.00 3.51
245 246 1.115930 ACTTGTGGCCTCTCGACTGT 61.116 55.000 3.32 0.00 0.00 3.55
246 247 0.888619 CTTGTGGCCTCTCGACTGTA 59.111 55.000 3.32 0.00 0.00 2.74
247 248 1.272490 CTTGTGGCCTCTCGACTGTAA 59.728 52.381 3.32 0.00 0.00 2.41
248 249 0.601558 TGTGGCCTCTCGACTGTAAC 59.398 55.000 3.32 0.00 0.00 2.50
249 250 0.889306 GTGGCCTCTCGACTGTAACT 59.111 55.000 3.32 0.00 0.00 2.24
250 251 1.135344 GTGGCCTCTCGACTGTAACTC 60.135 57.143 3.32 0.00 0.00 3.01
251 252 1.271982 TGGCCTCTCGACTGTAACTCT 60.272 52.381 3.32 0.00 0.00 3.24
252 253 2.026542 TGGCCTCTCGACTGTAACTCTA 60.027 50.000 3.32 0.00 0.00 2.43
253 254 3.215975 GGCCTCTCGACTGTAACTCTAT 58.784 50.000 0.00 0.00 0.00 1.98
254 255 4.141551 TGGCCTCTCGACTGTAACTCTATA 60.142 45.833 3.32 0.00 0.00 1.31
255 256 4.820716 GGCCTCTCGACTGTAACTCTATAA 59.179 45.833 0.00 0.00 0.00 0.98
256 257 5.277925 GGCCTCTCGACTGTAACTCTATAAC 60.278 48.000 0.00 0.00 0.00 1.89
257 258 5.528320 GCCTCTCGACTGTAACTCTATAACT 59.472 44.000 0.00 0.00 0.00 2.24
258 259 6.293027 GCCTCTCGACTGTAACTCTATAACTC 60.293 46.154 0.00 0.00 0.00 3.01
259 260 6.987992 CCTCTCGACTGTAACTCTATAACTCT 59.012 42.308 0.00 0.00 0.00 3.24
260 261 7.042321 CCTCTCGACTGTAACTCTATAACTCTG 60.042 44.444 0.00 0.00 0.00 3.35
261 262 6.258287 TCTCGACTGTAACTCTATAACTCTGC 59.742 42.308 0.00 0.00 0.00 4.26
262 263 5.878669 TCGACTGTAACTCTATAACTCTGCA 59.121 40.000 0.00 0.00 0.00 4.41
263 264 6.373495 TCGACTGTAACTCTATAACTCTGCAA 59.627 38.462 0.00 0.00 0.00 4.08
264 265 7.067129 TCGACTGTAACTCTATAACTCTGCAAT 59.933 37.037 0.00 0.00 0.00 3.56
265 266 8.343366 CGACTGTAACTCTATAACTCTGCAATA 58.657 37.037 0.00 0.00 0.00 1.90
271 272 8.950208 AACTCTATAACTCTGCAATAAACTCC 57.050 34.615 0.00 0.00 0.00 3.85
272 273 7.501844 ACTCTATAACTCTGCAATAAACTCCC 58.498 38.462 0.00 0.00 0.00 4.30
273 274 7.345914 ACTCTATAACTCTGCAATAAACTCCCT 59.654 37.037 0.00 0.00 0.00 4.20
274 275 8.090788 TCTATAACTCTGCAATAAACTCCCTT 57.909 34.615 0.00 0.00 0.00 3.95
275 276 8.548877 TCTATAACTCTGCAATAAACTCCCTTT 58.451 33.333 0.00 0.00 0.00 3.11
276 277 9.832445 CTATAACTCTGCAATAAACTCCCTTTA 57.168 33.333 0.00 0.00 0.00 1.85
277 278 6.819397 AACTCTGCAATAAACTCCCTTTAC 57.181 37.500 0.00 0.00 0.00 2.01
278 279 5.254115 ACTCTGCAATAAACTCCCTTTACC 58.746 41.667 0.00 0.00 0.00 2.85
279 280 4.595986 TCTGCAATAAACTCCCTTTACCC 58.404 43.478 0.00 0.00 0.00 3.69
280 281 4.291249 TCTGCAATAAACTCCCTTTACCCT 59.709 41.667 0.00 0.00 0.00 4.34
281 282 4.595986 TGCAATAAACTCCCTTTACCCTC 58.404 43.478 0.00 0.00 0.00 4.30
282 283 3.626217 GCAATAAACTCCCTTTACCCTCG 59.374 47.826 0.00 0.00 0.00 4.63
283 284 4.624604 GCAATAAACTCCCTTTACCCTCGA 60.625 45.833 0.00 0.00 0.00 4.04
284 285 5.493809 CAATAAACTCCCTTTACCCTCGAA 58.506 41.667 0.00 0.00 0.00 3.71
285 286 5.767277 ATAAACTCCCTTTACCCTCGAAA 57.233 39.130 0.00 0.00 0.00 3.46
286 287 3.697619 AACTCCCTTTACCCTCGAAAG 57.302 47.619 0.00 0.00 34.32 2.62
287 288 2.617658 ACTCCCTTTACCCTCGAAAGT 58.382 47.619 0.00 0.00 32.94 2.66
288 289 3.782992 ACTCCCTTTACCCTCGAAAGTA 58.217 45.455 0.00 0.00 32.94 2.24
289 290 4.162651 ACTCCCTTTACCCTCGAAAGTAA 58.837 43.478 3.46 3.46 32.94 2.24
290 291 4.594491 ACTCCCTTTACCCTCGAAAGTAAA 59.406 41.667 15.22 15.22 36.39 2.01
291 292 5.072193 ACTCCCTTTACCCTCGAAAGTAAAA 59.928 40.000 16.24 5.80 37.83 1.52
292 293 5.554070 TCCCTTTACCCTCGAAAGTAAAAG 58.446 41.667 16.24 12.06 37.83 2.27
293 294 5.307716 TCCCTTTACCCTCGAAAGTAAAAGA 59.692 40.000 16.24 13.69 37.83 2.52
294 295 5.999600 CCCTTTACCCTCGAAAGTAAAAGAA 59.000 40.000 16.24 0.91 37.83 2.52
295 296 6.072838 CCCTTTACCCTCGAAAGTAAAAGAAC 60.073 42.308 16.24 0.00 37.83 3.01
296 297 6.484308 CCTTTACCCTCGAAAGTAAAAGAACA 59.516 38.462 16.24 0.10 37.83 3.18
297 298 7.012610 CCTTTACCCTCGAAAGTAAAAGAACAA 59.987 37.037 16.24 0.00 37.83 2.83
298 299 7.862512 TTACCCTCGAAAGTAAAAGAACAAA 57.137 32.000 4.84 0.00 0.00 2.83
299 300 6.373186 ACCCTCGAAAGTAAAAGAACAAAG 57.627 37.500 0.00 0.00 0.00 2.77
300 301 5.884232 ACCCTCGAAAGTAAAAGAACAAAGT 59.116 36.000 0.00 0.00 0.00 2.66
301 302 7.049754 ACCCTCGAAAGTAAAAGAACAAAGTA 58.950 34.615 0.00 0.00 0.00 2.24
302 303 7.718314 ACCCTCGAAAGTAAAAGAACAAAGTAT 59.282 33.333 0.00 0.00 0.00 2.12
303 304 8.565416 CCCTCGAAAGTAAAAGAACAAAGTATT 58.435 33.333 0.00 0.00 0.00 1.89
304 305 9.382244 CCTCGAAAGTAAAAGAACAAAGTATTG 57.618 33.333 0.00 0.00 42.46 1.90
305 306 9.382244 CTCGAAAGTAAAAGAACAAAGTATTGG 57.618 33.333 0.00 0.00 41.01 3.16
306 307 8.895737 TCGAAAGTAAAAGAACAAAGTATTGGT 58.104 29.630 0.00 0.00 39.82 3.67
314 315 8.500753 AAAGAACAAAGTATTGGTATATGCGA 57.499 30.769 0.00 0.00 36.33 5.10
315 316 7.715265 AGAACAAAGTATTGGTATATGCGAG 57.285 36.000 0.00 0.00 36.33 5.03
316 317 7.272978 AGAACAAAGTATTGGTATATGCGAGT 58.727 34.615 0.00 0.00 36.33 4.18
317 318 8.418662 AGAACAAAGTATTGGTATATGCGAGTA 58.581 33.333 0.00 0.00 36.33 2.59
318 319 7.941795 ACAAAGTATTGGTATATGCGAGTAC 57.058 36.000 1.47 1.47 41.01 2.73
319 320 7.723324 ACAAAGTATTGGTATATGCGAGTACT 58.277 34.615 0.00 0.00 41.01 2.73
320 321 7.866393 ACAAAGTATTGGTATATGCGAGTACTC 59.134 37.037 13.18 13.18 41.01 2.59
321 322 7.520451 AAGTATTGGTATATGCGAGTACTCA 57.480 36.000 22.37 5.18 0.00 3.41
322 323 7.147143 AGTATTGGTATATGCGAGTACTCAG 57.853 40.000 22.37 15.32 0.00 3.35
323 324 4.848562 TTGGTATATGCGAGTACTCAGG 57.151 45.455 22.37 8.43 0.00 3.86
324 325 3.154710 TGGTATATGCGAGTACTCAGGG 58.845 50.000 22.37 7.72 0.00 4.45
325 326 3.155501 GGTATATGCGAGTACTCAGGGT 58.844 50.000 22.37 7.81 0.00 4.34
326 327 3.190953 GGTATATGCGAGTACTCAGGGTC 59.809 52.174 22.37 6.44 0.00 4.46
327 328 2.730934 TATGCGAGTACTCAGGGTCT 57.269 50.000 22.37 3.61 0.00 3.85
328 329 1.107114 ATGCGAGTACTCAGGGTCTG 58.893 55.000 22.37 5.58 0.00 3.51
329 330 0.037734 TGCGAGTACTCAGGGTCTGA 59.962 55.000 22.37 0.00 38.25 3.27
330 331 1.174783 GCGAGTACTCAGGGTCTGAA 58.825 55.000 22.37 0.00 40.18 3.02
331 332 1.544691 GCGAGTACTCAGGGTCTGAAA 59.455 52.381 22.37 0.00 40.18 2.69
332 333 2.671632 GCGAGTACTCAGGGTCTGAAAC 60.672 54.545 22.37 1.60 40.18 2.78
363 364 1.346395 ACCACGAACCATCTGCTTACA 59.654 47.619 0.00 0.00 0.00 2.41
379 380 2.038814 TACATGGCCGACGCATGGAT 62.039 55.000 16.47 3.27 36.38 3.41
381 382 1.301716 ATGGCCGACGCATGGATAC 60.302 57.895 0.00 0.00 36.38 2.24
401 402 0.606401 CGTTCCACCCAGCTGTTCAT 60.606 55.000 13.81 0.00 0.00 2.57
414 415 0.255604 TGTTCATGTGCCCGATCCAT 59.744 50.000 0.00 0.00 0.00 3.41
416 417 0.179020 TTCATGTGCCCGATCCATCC 60.179 55.000 0.00 0.00 0.00 3.51
417 418 1.148949 CATGTGCCCGATCCATCCA 59.851 57.895 0.00 0.00 0.00 3.41
418 419 0.887836 CATGTGCCCGATCCATCCAG 60.888 60.000 0.00 0.00 0.00 3.86
474 487 4.948576 ACGCACATACGTGTCGAA 57.051 50.000 11.53 0.00 46.28 3.71
571 589 2.385091 CCGCGTTTCCTACCGTTGG 61.385 63.158 4.92 0.00 0.00 3.77
717 749 4.404654 CCGCAAAAGCGAGCACCC 62.405 66.667 11.83 0.00 34.88 4.61
718 750 4.741781 CGCAAAAGCGAGCACCCG 62.742 66.667 3.45 0.00 34.88 5.28
731 795 1.071471 CACCCGTCACTGCCTTTCT 59.929 57.895 0.00 0.00 0.00 2.52
732 796 1.071471 ACCCGTCACTGCCTTTCTG 59.929 57.895 0.00 0.00 0.00 3.02
733 797 2.328099 CCCGTCACTGCCTTTCTGC 61.328 63.158 0.00 0.00 0.00 4.26
734 798 2.328099 CCGTCACTGCCTTTCTGCC 61.328 63.158 0.00 0.00 0.00 4.85
735 799 2.328099 CGTCACTGCCTTTCTGCCC 61.328 63.158 0.00 0.00 0.00 5.36
736 800 1.073897 GTCACTGCCTTTCTGCCCT 59.926 57.895 0.00 0.00 0.00 5.19
737 801 1.073722 TCACTGCCTTTCTGCCCTG 59.926 57.895 0.00 0.00 0.00 4.45
738 802 2.282745 ACTGCCTTTCTGCCCTGC 60.283 61.111 0.00 0.00 0.00 4.85
739 803 2.035312 CTGCCTTTCTGCCCTGCT 59.965 61.111 0.00 0.00 0.00 4.24
740 804 2.034687 TGCCTTTCTGCCCTGCTC 59.965 61.111 0.00 0.00 0.00 4.26
741 805 2.354343 GCCTTTCTGCCCTGCTCT 59.646 61.111 0.00 0.00 0.00 4.09
826 893 2.125673 CCGCACTCCCTACCGTTG 60.126 66.667 0.00 0.00 0.00 4.10
829 896 2.955881 GCACTCCCTACCGTTGCCT 61.956 63.158 0.00 0.00 0.00 4.75
837 904 3.166490 TACCGTTGCCTCGCCACAA 62.166 57.895 0.00 0.00 0.00 3.33
838 905 4.025401 CCGTTGCCTCGCCACAAC 62.025 66.667 0.00 0.00 42.15 3.32
909 1251 0.413434 TCTCATCTCCCACCTCACCA 59.587 55.000 0.00 0.00 0.00 4.17
911 1253 0.984230 TCATCTCCCACCTCACCAAC 59.016 55.000 0.00 0.00 0.00 3.77
912 1254 0.987294 CATCTCCCACCTCACCAACT 59.013 55.000 0.00 0.00 0.00 3.16
928 1270 2.139731 AACTCTCTCTCCCGGTCGGT 62.140 60.000 8.67 0.00 0.00 4.69
934 1276 2.045242 CTCCCGGTCGGTCTCAGA 60.045 66.667 8.67 0.00 0.00 3.27
935 1277 2.360852 TCCCGGTCGGTCTCAGAC 60.361 66.667 8.67 0.00 37.86 3.51
936 1278 2.361357 CCCGGTCGGTCTCAGACT 60.361 66.667 4.40 0.00 38.58 3.24
952 1294 0.613292 GACTCTCAGCTCACTCCCCA 60.613 60.000 0.00 0.00 0.00 4.96
1028 1370 2.672996 AATGGCCACGCTCACCAC 60.673 61.111 8.16 0.00 35.99 4.16
1071 1416 2.224329 CCTCAGCATCATCCTCTTCCTG 60.224 54.545 0.00 0.00 0.00 3.86
1074 1419 1.141254 AGCATCATCCTCTTCCTGCTG 59.859 52.381 0.00 0.00 38.45 4.41
1081 1426 1.447489 CTCTTCCTGCTGGCTGACG 60.447 63.158 4.42 0.00 0.00 4.35
1587 1932 2.438434 GGGAAGGCCATGGACGTG 60.438 66.667 18.40 0.00 35.15 4.49
1689 2034 2.920912 TTCGTGGGGTTCTCCGCT 60.921 61.111 0.74 0.00 45.40 5.52
1836 2181 3.069318 GACCCGACGCTTCCCTCT 61.069 66.667 0.00 0.00 0.00 3.69
1909 2254 2.571757 CGCCGACCAGCTCAGTTA 59.428 61.111 0.00 0.00 0.00 2.24
1911 2256 1.592223 GCCGACCAGCTCAGTTACT 59.408 57.895 0.00 0.00 0.00 2.24
1912 2257 0.737715 GCCGACCAGCTCAGTTACTG 60.738 60.000 5.94 5.94 0.00 2.74
1913 2258 0.737715 CCGACCAGCTCAGTTACTGC 60.738 60.000 7.61 0.00 32.37 4.40
1914 2259 1.073216 CGACCAGCTCAGTTACTGCG 61.073 60.000 7.61 2.27 32.37 5.18
1915 2260 0.737715 GACCAGCTCAGTTACTGCGG 60.738 60.000 7.61 7.79 32.37 5.69
1916 2261 2.103042 CCAGCTCAGTTACTGCGGC 61.103 63.158 17.32 17.32 32.37 6.53
1917 2262 2.125912 AGCTCAGTTACTGCGGCG 60.126 61.111 18.31 0.51 36.03 6.46
1947 2292 0.810031 CCATTTCGGTCGCTCGGAAT 60.810 55.000 0.00 0.00 38.74 3.01
2349 2697 1.728778 CGAGCTCTCCATCATCGCG 60.729 63.158 12.85 0.00 0.00 5.87
2400 2748 1.192146 AGGGCTGGTGCTACGAGAAA 61.192 55.000 0.00 0.00 39.59 2.52
2427 2775 2.730934 TCCTGCTGGTCTACGACTAT 57.269 50.000 9.73 0.00 32.47 2.12
2835 3231 1.455383 GGTGCAACAACCTGGTGGAG 61.455 60.000 8.57 1.06 35.62 3.86
2943 3339 4.982701 GTGCTGCTGGTGGGGCTT 62.983 66.667 0.00 0.00 0.00 4.35
2945 3341 4.982701 GCTGCTGGTGGGGCTTGT 62.983 66.667 0.00 0.00 0.00 3.16
3135 3531 2.670148 GGGGCTGAACCTGTCGGAT 61.670 63.158 0.00 0.00 39.10 4.18
3288 3689 3.186909 TGAAATGCGGACGAGATTAGTG 58.813 45.455 0.00 0.00 0.00 2.74
3396 6735 6.766429 TCAGATTTCAGATGATTCATCCGAT 58.234 36.000 20.49 10.86 41.36 4.18
3418 6757 8.282592 CCGATTCAAATTTCCTTTTCCTTTTTC 58.717 33.333 0.00 0.00 0.00 2.29
3421 6760 9.699410 ATTCAAATTTCCTTTTCCTTTTTCCTT 57.301 25.926 0.00 0.00 0.00 3.36
3423 6762 8.955388 TCAAATTTCCTTTTCCTTTTTCCTTTG 58.045 29.630 0.00 0.00 0.00 2.77
3424 6763 8.739039 CAAATTTCCTTTTCCTTTTTCCTTTGT 58.261 29.630 0.00 0.00 0.00 2.83
3427 6766 5.182487 TCCTTTTCCTTTTTCCTTTGTTGC 58.818 37.500 0.00 0.00 0.00 4.17
3430 6769 5.675684 TTTCCTTTTTCCTTTGTTGCTCT 57.324 34.783 0.00 0.00 0.00 4.09
3431 6770 4.918810 TCCTTTTTCCTTTGTTGCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
3432 6771 4.536765 TCCTTTTTCCTTTGTTGCTCTCT 58.463 39.130 0.00 0.00 0.00 3.10
3433 6772 5.690865 TCCTTTTTCCTTTGTTGCTCTCTA 58.309 37.500 0.00 0.00 0.00 2.43
3480 6851 4.802999 CTCTTTTTGTTCAGATCTTGGCC 58.197 43.478 0.00 0.00 0.00 5.36
3482 6853 4.648762 TCTTTTTGTTCAGATCTTGGCCAA 59.351 37.500 19.25 19.25 0.00 4.52
3487 6858 4.009675 TGTTCAGATCTTGGCCAACATAC 58.990 43.478 16.05 5.75 0.00 2.39
3488 6859 4.263462 TGTTCAGATCTTGGCCAACATACT 60.263 41.667 16.05 8.88 0.00 2.12
3489 6860 4.142609 TCAGATCTTGGCCAACATACTC 57.857 45.455 16.05 6.96 0.00 2.59
3490 6861 3.118261 TCAGATCTTGGCCAACATACTCC 60.118 47.826 16.05 0.00 0.00 3.85
3491 6862 3.118112 CAGATCTTGGCCAACATACTCCT 60.118 47.826 16.05 0.08 0.00 3.69
3492 6863 4.101585 CAGATCTTGGCCAACATACTCCTA 59.898 45.833 16.05 0.00 0.00 2.94
3493 6864 4.346418 AGATCTTGGCCAACATACTCCTAG 59.654 45.833 16.05 0.00 0.00 3.02
3787 7346 5.357742 TCTAGTGGTAGTACGTGGTGATA 57.642 43.478 0.00 0.00 0.00 2.15
3797 7356 3.260475 ACGTGGTGATATGCTGCTTTA 57.740 42.857 0.00 0.00 0.00 1.85
3800 7359 4.750098 ACGTGGTGATATGCTGCTTTATAC 59.250 41.667 0.00 0.00 0.00 1.47
3808 7367 8.131100 GTGATATGCTGCTTTATACACATTTGT 58.869 33.333 0.00 0.00 40.02 2.83
3810 7369 5.309323 TGCTGCTTTATACACATTTGTCC 57.691 39.130 0.00 0.00 37.15 4.02
3812 7371 5.106197 TGCTGCTTTATACACATTTGTCCTG 60.106 40.000 0.00 0.00 37.15 3.86
3813 7372 5.677091 GCTGCTTTATACACATTTGTCCTGG 60.677 44.000 0.00 0.00 37.15 4.45
3887 10691 2.306805 TGATTCAGCTGTGTTGGGATCT 59.693 45.455 14.67 0.00 0.00 2.75
3891 10695 3.173151 TCAGCTGTGTTGGGATCTTCTA 58.827 45.455 14.67 0.00 0.00 2.10
3999 12194 3.129287 GTGGTGCTAATCATCCCAAAGTG 59.871 47.826 0.00 0.00 0.00 3.16
4006 12201 5.450550 GCTAATCATCCCAAAGTGTAAAGGC 60.451 44.000 0.00 0.00 0.00 4.35
4100 12301 1.865865 GAGCTTTGGAGTCGTCAACA 58.134 50.000 0.00 0.00 0.00 3.33
4107 12308 1.272490 TGGAGTCGTCAACATCAGTCC 59.728 52.381 0.00 0.00 0.00 3.85
4160 12381 2.125326 CGCTATCTCGTGGGTCCCA 61.125 63.158 6.47 6.47 0.00 4.37
4161 12382 1.464376 CGCTATCTCGTGGGTCCCAT 61.464 60.000 15.49 0.00 35.28 4.00
4162 12383 0.318762 GCTATCTCGTGGGTCCCATC 59.681 60.000 15.49 7.14 35.28 3.51
4163 12384 2.002505 CTATCTCGTGGGTCCCATCT 57.997 55.000 15.49 0.00 35.28 2.90
4164 12385 1.615883 CTATCTCGTGGGTCCCATCTG 59.384 57.143 15.49 7.66 35.28 2.90
4165 12386 1.690219 ATCTCGTGGGTCCCATCTGC 61.690 60.000 15.49 0.00 35.28 4.26
4166 12387 3.723235 CTCGTGGGTCCCATCTGCG 62.723 68.421 15.49 13.16 35.28 5.18
4167 12388 4.082523 CGTGGGTCCCATCTGCGT 62.083 66.667 15.49 0.00 35.28 5.24
4168 12389 2.436646 GTGGGTCCCATCTGCGTG 60.437 66.667 15.49 0.00 35.28 5.34
4169 12390 4.408821 TGGGTCCCATCTGCGTGC 62.409 66.667 6.47 0.00 0.00 5.34
4170 12391 4.408821 GGGTCCCATCTGCGTGCA 62.409 66.667 1.78 0.00 0.00 4.57
4173 12394 1.746615 GTCCCATCTGCGTGCATGT 60.747 57.895 7.93 0.00 0.00 3.21
4181 12402 2.977456 GCGTGCATGTGTGTGGGA 60.977 61.111 7.93 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.925861 GATCCCCAGGCGAGCTGC 62.926 72.222 0.00 0.00 45.38 5.25
11 12 4.598894 CGATCCCCAGGCGAGCTG 62.599 72.222 0.00 0.00 0.00 4.24
14 15 4.292178 GAGCGATCCCCAGGCGAG 62.292 72.222 0.00 0.00 0.00 5.03
24 25 4.880426 TGGGGGAGGGGAGCGATC 62.880 72.222 0.00 0.00 0.00 3.69
25 26 4.431524 TTGGGGGAGGGGAGCGAT 62.432 66.667 0.00 0.00 0.00 4.58
70 71 2.804828 GAAGAGACAAGTGCCCCGGG 62.805 65.000 15.80 15.80 0.00 5.73
71 72 1.376037 GAAGAGACAAGTGCCCCGG 60.376 63.158 0.00 0.00 0.00 5.73
72 73 1.376037 GGAAGAGACAAGTGCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
73 74 1.376037 CGGAAGAGACAAGTGCCCC 60.376 63.158 0.00 0.00 0.00 5.80
74 75 2.035442 GCGGAAGAGACAAGTGCCC 61.035 63.158 0.00 0.00 0.00 5.36
75 76 1.004440 AGCGGAAGAGACAAGTGCC 60.004 57.895 0.00 0.00 0.00 5.01
76 77 0.037790 AGAGCGGAAGAGACAAGTGC 60.038 55.000 0.00 0.00 0.00 4.40
77 78 1.543802 AGAGAGCGGAAGAGACAAGTG 59.456 52.381 0.00 0.00 0.00 3.16
78 79 1.816224 GAGAGAGCGGAAGAGACAAGT 59.184 52.381 0.00 0.00 0.00 3.16
79 80 2.091541 AGAGAGAGCGGAAGAGACAAG 58.908 52.381 0.00 0.00 0.00 3.16
80 81 2.208132 AGAGAGAGCGGAAGAGACAA 57.792 50.000 0.00 0.00 0.00 3.18
81 82 1.815613 CAAGAGAGAGCGGAAGAGACA 59.184 52.381 0.00 0.00 0.00 3.41
82 83 1.469079 GCAAGAGAGAGCGGAAGAGAC 60.469 57.143 0.00 0.00 0.00 3.36
83 84 0.814457 GCAAGAGAGAGCGGAAGAGA 59.186 55.000 0.00 0.00 0.00 3.10
84 85 0.529833 TGCAAGAGAGAGCGGAAGAG 59.470 55.000 0.00 0.00 0.00 2.85
85 86 0.244994 GTGCAAGAGAGAGCGGAAGA 59.755 55.000 0.00 0.00 0.00 2.87
86 87 0.739112 GGTGCAAGAGAGAGCGGAAG 60.739 60.000 0.00 0.00 0.00 3.46
87 88 1.293498 GGTGCAAGAGAGAGCGGAA 59.707 57.895 0.00 0.00 0.00 4.30
88 89 2.973899 GGTGCAAGAGAGAGCGGA 59.026 61.111 0.00 0.00 0.00 5.54
89 90 2.507992 CGGTGCAAGAGAGAGCGG 60.508 66.667 0.00 0.00 0.00 5.52
90 91 2.507992 CCGGTGCAAGAGAGAGCG 60.508 66.667 0.00 0.00 0.00 5.03
91 92 2.817396 GCCGGTGCAAGAGAGAGC 60.817 66.667 1.90 0.00 37.47 4.09
92 93 2.507992 CGCCGGTGCAAGAGAGAG 60.508 66.667 0.00 0.00 37.32 3.20
93 94 2.989253 TCGCCGGTGCAAGAGAGA 60.989 61.111 11.05 0.00 37.32 3.10
94 95 2.811317 GTCGCCGGTGCAAGAGAG 60.811 66.667 11.05 0.00 37.32 3.20
95 96 4.717629 CGTCGCCGGTGCAAGAGA 62.718 66.667 11.05 0.00 37.32 3.10
96 97 4.717629 TCGTCGCCGGTGCAAGAG 62.718 66.667 11.05 0.00 37.32 2.85
97 98 4.717629 CTCGTCGCCGGTGCAAGA 62.718 66.667 11.05 8.35 37.32 3.02
109 110 0.878961 ACTTTGCCCAACGACTCGTC 60.879 55.000 4.17 0.00 39.99 4.20
110 111 0.878961 GACTTTGCCCAACGACTCGT 60.879 55.000 0.00 0.00 43.97 4.18
111 112 1.860078 GACTTTGCCCAACGACTCG 59.140 57.895 0.00 0.00 0.00 4.18
112 113 0.599204 TCGACTTTGCCCAACGACTC 60.599 55.000 0.00 0.00 0.00 3.36
113 114 0.179067 TTCGACTTTGCCCAACGACT 60.179 50.000 0.00 0.00 32.89 4.18
114 115 0.872388 ATTCGACTTTGCCCAACGAC 59.128 50.000 0.00 0.00 32.89 4.34
115 116 1.153353 GATTCGACTTTGCCCAACGA 58.847 50.000 0.00 0.00 0.00 3.85
116 117 0.168128 GGATTCGACTTTGCCCAACG 59.832 55.000 0.00 0.00 0.00 4.10
117 118 1.068541 GTGGATTCGACTTTGCCCAAC 60.069 52.381 0.00 0.00 0.00 3.77
118 119 1.243902 GTGGATTCGACTTTGCCCAA 58.756 50.000 0.00 0.00 0.00 4.12
119 120 0.953471 CGTGGATTCGACTTTGCCCA 60.953 55.000 0.00 0.00 0.00 5.36
120 121 0.953960 ACGTGGATTCGACTTTGCCC 60.954 55.000 0.00 0.00 34.70 5.36
121 122 0.442699 GACGTGGATTCGACTTTGCC 59.557 55.000 0.00 0.00 34.70 4.52
122 123 1.144969 TGACGTGGATTCGACTTTGC 58.855 50.000 0.00 0.00 34.70 3.68
123 124 3.541711 GTTTGACGTGGATTCGACTTTG 58.458 45.455 0.00 0.00 34.70 2.77
124 125 2.546789 GGTTTGACGTGGATTCGACTTT 59.453 45.455 0.00 0.00 34.70 2.66
125 126 2.140717 GGTTTGACGTGGATTCGACTT 58.859 47.619 0.00 0.00 34.70 3.01
126 127 1.607251 GGGTTTGACGTGGATTCGACT 60.607 52.381 0.00 0.00 34.70 4.18
127 128 0.794473 GGGTTTGACGTGGATTCGAC 59.206 55.000 0.00 0.00 34.70 4.20
128 129 0.682852 AGGGTTTGACGTGGATTCGA 59.317 50.000 0.00 0.00 34.70 3.71
129 130 2.373540 TAGGGTTTGACGTGGATTCG 57.626 50.000 0.00 0.00 0.00 3.34
130 131 3.308866 CGATTAGGGTTTGACGTGGATTC 59.691 47.826 0.00 0.00 0.00 2.52
131 132 3.267483 CGATTAGGGTTTGACGTGGATT 58.733 45.455 0.00 0.00 0.00 3.01
132 133 2.901249 CGATTAGGGTTTGACGTGGAT 58.099 47.619 0.00 0.00 0.00 3.41
133 134 1.673626 GCGATTAGGGTTTGACGTGGA 60.674 52.381 0.00 0.00 0.00 4.02
134 135 0.725117 GCGATTAGGGTTTGACGTGG 59.275 55.000 0.00 0.00 0.00 4.94
135 136 0.725117 GGCGATTAGGGTTTGACGTG 59.275 55.000 0.00 0.00 0.00 4.49
136 137 0.322322 TGGCGATTAGGGTTTGACGT 59.678 50.000 0.00 0.00 0.00 4.34
137 138 0.725117 GTGGCGATTAGGGTTTGACG 59.275 55.000 0.00 0.00 0.00 4.35
138 139 1.092348 GGTGGCGATTAGGGTTTGAC 58.908 55.000 0.00 0.00 0.00 3.18
139 140 0.391927 CGGTGGCGATTAGGGTTTGA 60.392 55.000 0.00 0.00 0.00 2.69
140 141 1.373590 CCGGTGGCGATTAGGGTTTG 61.374 60.000 0.00 0.00 0.00 2.93
141 142 1.078001 CCGGTGGCGATTAGGGTTT 60.078 57.895 0.00 0.00 0.00 3.27
142 143 2.587889 CCGGTGGCGATTAGGGTT 59.412 61.111 0.00 0.00 0.00 4.11
143 144 4.171103 GCCGGTGGCGATTAGGGT 62.171 66.667 1.90 0.00 39.62 4.34
159 160 3.810896 CTAAAACCCTGGCGGCGC 61.811 66.667 26.17 26.17 33.26 6.53
160 161 3.131478 CCTAAAACCCTGGCGGCG 61.131 66.667 0.51 0.51 33.26 6.46
161 162 2.754254 CCCTAAAACCCTGGCGGC 60.754 66.667 0.00 0.00 33.26 6.53
162 163 0.541063 AAACCCTAAAACCCTGGCGG 60.541 55.000 0.00 0.00 37.81 6.13
163 164 0.601057 CAAACCCTAAAACCCTGGCG 59.399 55.000 0.00 0.00 0.00 5.69
164 165 0.973632 CCAAACCCTAAAACCCTGGC 59.026 55.000 0.00 0.00 0.00 4.85
165 166 1.639722 CCCAAACCCTAAAACCCTGG 58.360 55.000 0.00 0.00 0.00 4.45
166 167 1.639722 CCCCAAACCCTAAAACCCTG 58.360 55.000 0.00 0.00 0.00 4.45
167 168 0.490017 CCCCCAAACCCTAAAACCCT 59.510 55.000 0.00 0.00 0.00 4.34
168 169 0.488220 TCCCCCAAACCCTAAAACCC 59.512 55.000 0.00 0.00 0.00 4.11
169 170 2.402182 TTCCCCCAAACCCTAAAACC 57.598 50.000 0.00 0.00 0.00 3.27
170 171 3.712733 AGTTTTCCCCCAAACCCTAAAAC 59.287 43.478 0.00 0.00 37.36 2.43
171 172 3.712218 CAGTTTTCCCCCAAACCCTAAAA 59.288 43.478 0.00 0.00 37.36 1.52
172 173 3.310193 CAGTTTTCCCCCAAACCCTAAA 58.690 45.455 0.00 0.00 37.36 1.85
173 174 2.426561 CCAGTTTTCCCCCAAACCCTAA 60.427 50.000 0.00 0.00 37.36 2.69
174 175 1.148236 CCAGTTTTCCCCCAAACCCTA 59.852 52.381 0.00 0.00 37.36 3.53
175 176 0.105194 CCAGTTTTCCCCCAAACCCT 60.105 55.000 0.00 0.00 37.36 4.34
176 177 1.125093 CCCAGTTTTCCCCCAAACCC 61.125 60.000 0.00 0.00 37.36 4.11
177 178 1.764571 GCCCAGTTTTCCCCCAAACC 61.765 60.000 0.00 0.00 37.36 3.27
178 179 1.051556 TGCCCAGTTTTCCCCCAAAC 61.052 55.000 0.00 0.00 36.97 2.93
179 180 1.051556 GTGCCCAGTTTTCCCCCAAA 61.052 55.000 0.00 0.00 0.00 3.28
180 181 1.458588 GTGCCCAGTTTTCCCCCAA 60.459 57.895 0.00 0.00 0.00 4.12
181 182 2.200092 GTGCCCAGTTTTCCCCCA 59.800 61.111 0.00 0.00 0.00 4.96
182 183 2.200092 TGTGCCCAGTTTTCCCCC 59.800 61.111 0.00 0.00 0.00 5.40
183 184 1.456705 TGTGTGCCCAGTTTTCCCC 60.457 57.895 0.00 0.00 0.00 4.81
184 185 1.040339 TGTGTGTGCCCAGTTTTCCC 61.040 55.000 0.00 0.00 0.00 3.97
185 186 0.820871 TTGTGTGTGCCCAGTTTTCC 59.179 50.000 0.00 0.00 0.00 3.13
186 187 1.797348 CGTTGTGTGTGCCCAGTTTTC 60.797 52.381 0.00 0.00 0.00 2.29
187 188 0.172352 CGTTGTGTGTGCCCAGTTTT 59.828 50.000 0.00 0.00 0.00 2.43
188 189 0.963355 ACGTTGTGTGTGCCCAGTTT 60.963 50.000 0.00 0.00 0.00 2.66
189 190 1.377987 ACGTTGTGTGTGCCCAGTT 60.378 52.632 0.00 0.00 0.00 3.16
190 191 2.112198 CACGTTGTGTGTGCCCAGT 61.112 57.895 0.00 0.00 43.88 4.00
191 192 2.715005 CACGTTGTGTGTGCCCAG 59.285 61.111 0.00 0.00 43.88 4.45
199 200 1.871039 GAACCACATAGCACGTTGTGT 59.129 47.619 15.03 1.03 41.27 3.72
200 201 2.143122 AGAACCACATAGCACGTTGTG 58.857 47.619 10.48 10.48 42.25 3.33
201 202 2.413837 GAGAACCACATAGCACGTTGT 58.586 47.619 0.00 0.00 0.00 3.32
202 203 1.390123 CGAGAACCACATAGCACGTTG 59.610 52.381 0.00 0.00 0.00 4.10
203 204 1.271379 TCGAGAACCACATAGCACGTT 59.729 47.619 0.00 0.00 0.00 3.99
204 205 0.885879 TCGAGAACCACATAGCACGT 59.114 50.000 0.00 0.00 0.00 4.49
205 206 1.550065 CTCGAGAACCACATAGCACG 58.450 55.000 6.58 0.00 0.00 5.34
206 207 1.476891 TCCTCGAGAACCACATAGCAC 59.523 52.381 15.71 0.00 0.00 4.40
207 208 1.476891 GTCCTCGAGAACCACATAGCA 59.523 52.381 15.71 0.00 0.00 3.49
208 209 1.751924 AGTCCTCGAGAACCACATAGC 59.248 52.381 15.71 0.00 0.00 2.97
209 210 3.193691 ACAAGTCCTCGAGAACCACATAG 59.806 47.826 15.71 0.00 0.00 2.23
210 211 3.056821 CACAAGTCCTCGAGAACCACATA 60.057 47.826 15.71 0.00 0.00 2.29
211 212 1.971357 ACAAGTCCTCGAGAACCACAT 59.029 47.619 15.71 0.00 0.00 3.21
212 213 1.068588 CACAAGTCCTCGAGAACCACA 59.931 52.381 15.71 0.00 0.00 4.17
213 214 1.605712 CCACAAGTCCTCGAGAACCAC 60.606 57.143 15.71 4.87 0.00 4.16
214 215 0.679505 CCACAAGTCCTCGAGAACCA 59.320 55.000 15.71 0.00 0.00 3.67
215 216 0.670854 GCCACAAGTCCTCGAGAACC 60.671 60.000 15.71 0.55 0.00 3.62
216 217 0.670854 GGCCACAAGTCCTCGAGAAC 60.671 60.000 15.71 2.88 0.00 3.01
217 218 0.832135 AGGCCACAAGTCCTCGAGAA 60.832 55.000 15.71 0.00 0.00 2.87
218 219 1.228894 AGGCCACAAGTCCTCGAGA 60.229 57.895 15.71 0.00 0.00 4.04
219 220 1.216710 GAGGCCACAAGTCCTCGAG 59.783 63.158 5.01 5.13 39.43 4.04
220 221 3.377656 GAGGCCACAAGTCCTCGA 58.622 61.111 5.01 0.00 39.43 4.04
223 224 1.228894 TCGAGAGGCCACAAGTCCT 60.229 57.895 5.01 0.00 34.90 3.85
224 225 1.079750 GTCGAGAGGCCACAAGTCC 60.080 63.158 5.01 0.00 0.00 3.85
225 226 0.389166 CAGTCGAGAGGCCACAAGTC 60.389 60.000 5.01 0.00 35.23 3.01
226 227 1.115930 ACAGTCGAGAGGCCACAAGT 61.116 55.000 5.01 0.00 35.23 3.16
227 228 0.888619 TACAGTCGAGAGGCCACAAG 59.111 55.000 5.01 0.00 35.23 3.16
228 229 1.000506 GTTACAGTCGAGAGGCCACAA 59.999 52.381 5.01 0.00 35.23 3.33
229 230 0.601558 GTTACAGTCGAGAGGCCACA 59.398 55.000 5.01 0.00 35.23 4.17
230 231 0.889306 AGTTACAGTCGAGAGGCCAC 59.111 55.000 5.01 0.00 35.23 5.01
231 232 1.174783 GAGTTACAGTCGAGAGGCCA 58.825 55.000 5.01 0.00 35.23 5.36
232 233 1.465794 AGAGTTACAGTCGAGAGGCC 58.534 55.000 0.00 0.00 35.23 5.19
233 234 5.528320 AGTTATAGAGTTACAGTCGAGAGGC 59.472 44.000 0.00 0.00 0.00 4.70
234 235 6.987992 AGAGTTATAGAGTTACAGTCGAGAGG 59.012 42.308 0.00 0.00 0.00 3.69
235 236 7.517734 GCAGAGTTATAGAGTTACAGTCGAGAG 60.518 44.444 0.00 0.00 0.00 3.20
236 237 6.258287 GCAGAGTTATAGAGTTACAGTCGAGA 59.742 42.308 0.00 0.00 0.00 4.04
237 238 6.037281 TGCAGAGTTATAGAGTTACAGTCGAG 59.963 42.308 0.00 0.00 0.00 4.04
238 239 5.878669 TGCAGAGTTATAGAGTTACAGTCGA 59.121 40.000 0.00 0.00 0.00 4.20
239 240 6.120378 TGCAGAGTTATAGAGTTACAGTCG 57.880 41.667 0.00 0.00 0.00 4.18
246 247 7.988028 GGGAGTTTATTGCAGAGTTATAGAGTT 59.012 37.037 0.00 0.00 0.00 3.01
247 248 7.345914 AGGGAGTTTATTGCAGAGTTATAGAGT 59.654 37.037 0.00 0.00 0.00 3.24
248 249 7.731054 AGGGAGTTTATTGCAGAGTTATAGAG 58.269 38.462 0.00 0.00 0.00 2.43
249 250 7.676683 AGGGAGTTTATTGCAGAGTTATAGA 57.323 36.000 0.00 0.00 0.00 1.98
250 251 8.738645 AAAGGGAGTTTATTGCAGAGTTATAG 57.261 34.615 0.00 0.00 0.00 1.31
251 252 9.609346 GTAAAGGGAGTTTATTGCAGAGTTATA 57.391 33.333 0.00 0.00 33.11 0.98
252 253 7.556635 GGTAAAGGGAGTTTATTGCAGAGTTAT 59.443 37.037 0.00 0.00 33.11 1.89
253 254 6.882678 GGTAAAGGGAGTTTATTGCAGAGTTA 59.117 38.462 0.00 0.00 33.11 2.24
254 255 5.710567 GGTAAAGGGAGTTTATTGCAGAGTT 59.289 40.000 0.00 0.00 33.11 3.01
255 256 5.254115 GGTAAAGGGAGTTTATTGCAGAGT 58.746 41.667 0.00 0.00 33.11 3.24
256 257 4.640647 GGGTAAAGGGAGTTTATTGCAGAG 59.359 45.833 0.00 0.00 33.11 3.35
257 258 4.291249 AGGGTAAAGGGAGTTTATTGCAGA 59.709 41.667 0.00 0.00 33.11 4.26
258 259 4.600062 AGGGTAAAGGGAGTTTATTGCAG 58.400 43.478 0.00 0.00 33.11 4.41
259 260 4.595986 GAGGGTAAAGGGAGTTTATTGCA 58.404 43.478 0.00 0.00 33.11 4.08
260 261 3.626217 CGAGGGTAAAGGGAGTTTATTGC 59.374 47.826 0.00 0.00 33.11 3.56
261 262 5.093849 TCGAGGGTAAAGGGAGTTTATTG 57.906 43.478 0.00 0.00 33.11 1.90
262 263 5.767277 TTCGAGGGTAAAGGGAGTTTATT 57.233 39.130 0.00 0.00 33.11 1.40
263 264 5.250082 ACTTTCGAGGGTAAAGGGAGTTTAT 59.750 40.000 0.00 0.00 38.09 1.40
264 265 4.594491 ACTTTCGAGGGTAAAGGGAGTTTA 59.406 41.667 0.00 0.00 38.09 2.01
265 266 3.393609 ACTTTCGAGGGTAAAGGGAGTTT 59.606 43.478 0.00 0.00 38.09 2.66
266 267 2.977580 ACTTTCGAGGGTAAAGGGAGTT 59.022 45.455 0.00 0.00 38.09 3.01
267 268 2.617658 ACTTTCGAGGGTAAAGGGAGT 58.382 47.619 0.00 0.00 38.09 3.85
268 269 4.813750 TTACTTTCGAGGGTAAAGGGAG 57.186 45.455 9.00 0.00 38.09 4.30
269 270 5.307716 TCTTTTACTTTCGAGGGTAAAGGGA 59.692 40.000 21.77 18.73 38.54 4.20
270 271 5.554070 TCTTTTACTTTCGAGGGTAAAGGG 58.446 41.667 21.77 17.59 38.54 3.95
271 272 6.484308 TGTTCTTTTACTTTCGAGGGTAAAGG 59.516 38.462 18.89 18.89 38.54 3.11
272 273 7.486802 TGTTCTTTTACTTTCGAGGGTAAAG 57.513 36.000 17.83 8.19 38.54 1.85
273 274 7.862512 TTGTTCTTTTACTTTCGAGGGTAAA 57.137 32.000 15.94 15.94 36.51 2.01
274 275 7.553760 ACTTTGTTCTTTTACTTTCGAGGGTAA 59.446 33.333 7.80 7.80 0.00 2.85
275 276 7.049754 ACTTTGTTCTTTTACTTTCGAGGGTA 58.950 34.615 0.00 0.00 0.00 3.69
276 277 5.884232 ACTTTGTTCTTTTACTTTCGAGGGT 59.116 36.000 0.00 0.00 0.00 4.34
277 278 6.373186 ACTTTGTTCTTTTACTTTCGAGGG 57.627 37.500 0.00 0.00 0.00 4.30
278 279 9.382244 CAATACTTTGTTCTTTTACTTTCGAGG 57.618 33.333 0.00 0.00 0.00 4.63
279 280 9.382244 CCAATACTTTGTTCTTTTACTTTCGAG 57.618 33.333 0.00 0.00 0.00 4.04
280 281 8.895737 ACCAATACTTTGTTCTTTTACTTTCGA 58.104 29.630 0.00 0.00 0.00 3.71
288 289 8.952278 TCGCATATACCAATACTTTGTTCTTTT 58.048 29.630 0.00 0.00 0.00 2.27
289 290 8.500753 TCGCATATACCAATACTTTGTTCTTT 57.499 30.769 0.00 0.00 0.00 2.52
290 291 7.769044 ACTCGCATATACCAATACTTTGTTCTT 59.231 33.333 0.00 0.00 0.00 2.52
291 292 7.272978 ACTCGCATATACCAATACTTTGTTCT 58.727 34.615 0.00 0.00 0.00 3.01
292 293 7.478520 ACTCGCATATACCAATACTTTGTTC 57.521 36.000 0.00 0.00 0.00 3.18
293 294 8.202137 AGTACTCGCATATACCAATACTTTGTT 58.798 33.333 0.00 0.00 0.00 2.83
294 295 7.723324 AGTACTCGCATATACCAATACTTTGT 58.277 34.615 0.00 0.00 0.00 2.83
295 296 7.865889 TGAGTACTCGCATATACCAATACTTTG 59.134 37.037 17.85 0.00 0.00 2.77
296 297 7.948357 TGAGTACTCGCATATACCAATACTTT 58.052 34.615 17.85 0.00 0.00 2.66
297 298 7.309255 CCTGAGTACTCGCATATACCAATACTT 60.309 40.741 17.85 0.00 0.00 2.24
298 299 6.151312 CCTGAGTACTCGCATATACCAATACT 59.849 42.308 17.85 0.00 0.00 2.12
299 300 6.323266 CCTGAGTACTCGCATATACCAATAC 58.677 44.000 17.85 0.00 0.00 1.89
300 301 5.417894 CCCTGAGTACTCGCATATACCAATA 59.582 44.000 17.85 0.00 0.00 1.90
301 302 4.220821 CCCTGAGTACTCGCATATACCAAT 59.779 45.833 17.85 0.00 0.00 3.16
302 303 3.572682 CCCTGAGTACTCGCATATACCAA 59.427 47.826 17.85 0.00 0.00 3.67
303 304 3.154710 CCCTGAGTACTCGCATATACCA 58.845 50.000 17.85 0.00 0.00 3.25
304 305 3.155501 ACCCTGAGTACTCGCATATACC 58.844 50.000 17.85 0.00 0.00 2.73
305 306 4.073549 AGACCCTGAGTACTCGCATATAC 58.926 47.826 17.85 6.35 0.00 1.47
306 307 4.072839 CAGACCCTGAGTACTCGCATATA 58.927 47.826 17.85 0.00 32.44 0.86
307 308 2.887783 CAGACCCTGAGTACTCGCATAT 59.112 50.000 17.85 2.50 32.44 1.78
308 309 2.092592 TCAGACCCTGAGTACTCGCATA 60.093 50.000 17.85 0.00 35.39 3.14
309 310 1.107114 CAGACCCTGAGTACTCGCAT 58.893 55.000 17.85 3.57 32.44 4.73
310 311 0.037734 TCAGACCCTGAGTACTCGCA 59.962 55.000 17.85 1.17 35.39 5.10
311 312 1.174783 TTCAGACCCTGAGTACTCGC 58.825 55.000 17.85 5.12 41.75 5.03
312 313 2.094649 GGTTTCAGACCCTGAGTACTCG 60.095 54.545 17.85 12.12 41.75 4.18
313 314 3.596310 GGTTTCAGACCCTGAGTACTC 57.404 52.381 16.32 16.32 41.75 2.59
333 334 2.282110 TTCGTGGTGCCACCCATG 60.282 61.111 12.25 5.36 43.49 3.66
334 335 2.282180 GTTCGTGGTGCCACCCAT 60.282 61.111 12.25 0.00 43.49 4.00
335 336 4.572571 GGTTCGTGGTGCCACCCA 62.573 66.667 12.25 0.00 43.49 4.51
336 337 3.860930 ATGGTTCGTGGTGCCACCC 62.861 63.158 12.25 11.07 43.49 4.61
337 338 2.282180 ATGGTTCGTGGTGCCACC 60.282 61.111 7.01 7.01 43.49 4.61
338 339 1.302511 AGATGGTTCGTGGTGCCAC 60.303 57.895 11.13 11.13 43.01 5.01
339 340 1.302431 CAGATGGTTCGTGGTGCCA 60.302 57.895 0.00 0.00 36.64 4.92
340 341 2.690778 GCAGATGGTTCGTGGTGCC 61.691 63.158 0.00 0.00 0.00 5.01
341 342 1.237285 AAGCAGATGGTTCGTGGTGC 61.237 55.000 0.00 0.00 0.00 5.01
342 343 1.732259 GTAAGCAGATGGTTCGTGGTG 59.268 52.381 0.00 0.00 37.00 4.17
343 344 1.346395 TGTAAGCAGATGGTTCGTGGT 59.654 47.619 0.00 0.00 37.00 4.16
344 345 2.093306 TGTAAGCAGATGGTTCGTGG 57.907 50.000 0.00 0.00 37.00 4.94
345 346 2.352651 CCATGTAAGCAGATGGTTCGTG 59.647 50.000 0.00 5.34 40.08 4.35
346 347 2.632377 CCATGTAAGCAGATGGTTCGT 58.368 47.619 0.00 0.00 40.08 3.85
347 348 1.331756 GCCATGTAAGCAGATGGTTCG 59.668 52.381 0.00 0.00 45.42 3.95
348 349 1.678101 GGCCATGTAAGCAGATGGTTC 59.322 52.381 0.00 0.00 45.42 3.62
363 364 1.301716 GTATCCATGCGTCGGCCAT 60.302 57.895 2.24 0.00 38.85 4.40
379 380 1.412453 AACAGCTGGGTGGAACGGTA 61.412 55.000 19.93 0.00 38.12 4.02
381 382 1.966451 GAACAGCTGGGTGGAACGG 60.966 63.158 19.93 0.00 38.12 4.44
401 402 2.910360 CTGGATGGATCGGGCACA 59.090 61.111 0.00 0.00 0.00 4.57
416 417 4.504916 CTGGGCGAGGTCGAGCTG 62.505 72.222 23.97 14.96 43.02 4.24
418 419 4.500116 GACTGGGCGAGGTCGAGC 62.500 72.222 6.48 6.48 43.02 5.03
604 624 1.566563 GTCTGCTGTTGCTGTCACG 59.433 57.895 0.00 0.00 40.48 4.35
605 625 1.835483 CGGTCTGCTGTTGCTGTCAC 61.835 60.000 0.00 0.00 40.48 3.67
606 626 1.595109 CGGTCTGCTGTTGCTGTCA 60.595 57.895 0.00 0.00 40.48 3.58
710 742 3.537206 AAGGCAGTGACGGGTGCTC 62.537 63.158 0.00 0.00 39.76 4.26
711 743 3.120086 AAAGGCAGTGACGGGTGCT 62.120 57.895 0.00 0.00 39.76 4.40
715 747 2.328099 GCAGAAAGGCAGTGACGGG 61.328 63.158 0.00 0.00 0.00 5.28
716 748 2.328099 GGCAGAAAGGCAGTGACGG 61.328 63.158 0.00 0.00 43.51 4.79
717 749 2.328099 GGGCAGAAAGGCAGTGACG 61.328 63.158 0.00 0.00 46.44 4.35
718 750 1.073897 AGGGCAGAAAGGCAGTGAC 59.926 57.895 0.00 0.00 46.44 3.67
731 795 4.405671 GCAGAGCAGAGCAGGGCA 62.406 66.667 0.00 0.00 0.00 5.36
733 797 4.486503 GGGCAGAGCAGAGCAGGG 62.487 72.222 0.00 0.00 0.00 4.45
734 798 4.486503 GGGGCAGAGCAGAGCAGG 62.487 72.222 0.00 0.00 0.00 4.85
735 799 4.834453 CGGGGCAGAGCAGAGCAG 62.834 72.222 0.00 0.00 0.00 4.24
738 802 4.527583 GAGCGGGGCAGAGCAGAG 62.528 72.222 1.31 0.00 35.48 3.35
763 827 3.721706 CAGAGTGGTGGGGGAGCC 61.722 72.222 0.00 0.00 0.00 4.70
811 878 2.436115 GGCAACGGTAGGGAGTGC 60.436 66.667 0.00 0.00 0.00 4.40
813 880 2.348888 CGAGGCAACGGTAGGGAGT 61.349 63.158 0.00 0.00 46.39 3.85
909 1251 1.378778 CCGACCGGGAGAGAGAGTT 60.379 63.158 6.32 0.00 38.47 3.01
911 1253 1.820481 GACCGACCGGGAGAGAGAG 60.820 68.421 13.43 0.00 39.97 3.20
912 1254 2.254737 GAGACCGACCGGGAGAGAGA 62.255 65.000 13.43 0.00 39.97 3.10
928 1270 2.617788 GGAGTGAGCTGAGAGTCTGAGA 60.618 54.545 11.18 0.00 0.00 3.27
934 1276 0.902516 GTGGGGAGTGAGCTGAGAGT 60.903 60.000 0.00 0.00 0.00 3.24
935 1277 1.896694 GTGGGGAGTGAGCTGAGAG 59.103 63.158 0.00 0.00 0.00 3.20
936 1278 1.979155 CGTGGGGAGTGAGCTGAGA 60.979 63.158 0.00 0.00 0.00 3.27
952 1294 0.608130 TTACATGAGCTGGAGTGCGT 59.392 50.000 0.00 0.00 38.13 5.24
1028 1370 4.825679 GGAGGGGAGGGGAGGTGG 62.826 77.778 0.00 0.00 0.00 4.61
1137 1482 3.313524 TCGCCCAGCAGCTTGAGA 61.314 61.111 0.00 0.00 0.00 3.27
1257 1602 1.743252 GAAGCTGGTGGAGAAGCCG 60.743 63.158 0.00 0.00 40.42 5.52
1461 1806 4.933064 CTGCCGAGATCGACGCCC 62.933 72.222 3.31 4.39 43.02 6.13
1476 1821 3.434319 GCCACGGACACCATGCTG 61.434 66.667 0.00 0.00 0.00 4.41
1496 1841 2.546494 GCCAAATCCAGATCGGCGG 61.546 63.158 7.21 0.00 32.14 6.13
1497 1842 3.025619 GCCAAATCCAGATCGGCG 58.974 61.111 0.00 0.00 32.14 6.46
1500 1845 0.820891 CCCCAGCCAAATCCAGATCG 60.821 60.000 0.00 0.00 0.00 3.69
1537 1882 4.047059 CCACGCGTACACGGTCCT 62.047 66.667 13.44 0.00 40.23 3.85
1587 1932 4.472702 GCCGAGTAGGACACGAAC 57.527 61.111 0.00 0.00 45.00 3.95
1647 1992 1.227674 CTCCTTGACATAGCCCGCC 60.228 63.158 0.00 0.00 0.00 6.13
1869 2214 2.654912 CGAAACCGTCGCTGGTGTC 61.655 63.158 6.11 6.11 44.14 3.67
1870 2215 2.660552 CGAAACCGTCGCTGGTGT 60.661 61.111 0.00 0.00 44.14 4.16
1929 2274 1.847818 TATTCCGAGCGACCGAAATG 58.152 50.000 0.00 0.00 0.00 2.32
1947 2292 2.046796 TGCGGCGTCTTGGCATTA 60.047 55.556 9.37 0.00 45.16 1.90
2400 2748 2.364842 ACCAGCAGGATCTCGCCT 60.365 61.111 0.35 0.00 39.37 5.52
2427 2775 4.776322 AGGCTGCCGTTGCGCATA 62.776 61.111 12.75 0.00 41.78 3.14
2451 2820 2.577378 GAGGCGTCGAAGAGCGTC 60.577 66.667 1.37 8.93 41.80 5.19
2835 3231 4.269523 TGCAGGCTCCACACCCAC 62.270 66.667 0.00 0.00 0.00 4.61
3250 3646 5.473039 CATTTCAAGAGGAACCAACCAATC 58.527 41.667 0.00 0.00 34.56 2.67
3257 3658 1.073125 TCCGCATTTCAAGAGGAACCA 59.927 47.619 0.00 0.00 34.56 3.67
3258 3659 1.468914 GTCCGCATTTCAAGAGGAACC 59.531 52.381 0.00 0.00 36.71 3.62
3260 3661 1.001520 TCGTCCGCATTTCAAGAGGAA 59.998 47.619 0.00 0.00 36.71 3.36
3261 3662 0.606096 TCGTCCGCATTTCAAGAGGA 59.394 50.000 0.00 0.00 32.30 3.71
3288 3689 7.766278 ACTCTCTCACCAATACATACATTTGAC 59.234 37.037 0.00 0.00 0.00 3.18
3386 6725 7.765819 GGAAAAGGAAATTTGAATCGGATGAAT 59.234 33.333 0.00 0.00 0.00 2.57
3392 6731 7.728847 AAAAGGAAAAGGAAATTTGAATCGG 57.271 32.000 0.00 0.00 0.00 4.18
3396 6735 9.527157 AAAGGAAAAAGGAAAAGGAAATTTGAA 57.473 25.926 0.00 0.00 0.00 2.69
3489 6860 6.931840 GGTACAATCATTTCTTCCTAGCTAGG 59.068 42.308 30.94 30.94 45.02 3.02
3490 6861 7.439655 GTGGTACAATCATTTCTTCCTAGCTAG 59.560 40.741 14.20 14.20 44.16 3.42
3491 6862 7.093068 TGTGGTACAATCATTTCTTCCTAGCTA 60.093 37.037 0.00 0.00 44.16 3.32
3492 6863 6.116126 GTGGTACAATCATTTCTTCCTAGCT 58.884 40.000 0.00 0.00 44.16 3.32
3493 6864 5.880332 TGTGGTACAATCATTTCTTCCTAGC 59.120 40.000 0.00 0.00 44.16 3.42
3504 6875 5.682234 TCAGATCAGTGTGGTACAATCAT 57.318 39.130 0.00 0.00 44.16 2.45
3735 7220 9.956640 AAAGAGAAGATCACTCAATAGAATGTT 57.043 29.630 17.75 2.74 36.91 2.71
3787 7346 5.653769 AGGACAAATGTGTATAAAGCAGCAT 59.346 36.000 0.00 0.00 38.41 3.79
3797 7356 4.253685 CGACTTCCAGGACAAATGTGTAT 58.746 43.478 0.00 0.00 38.41 2.29
3800 7359 2.480419 GACGACTTCCAGGACAAATGTG 59.520 50.000 0.00 0.00 0.00 3.21
3808 7367 0.879765 GACTTCGACGACTTCCAGGA 59.120 55.000 0.00 0.00 0.00 3.86
3810 7369 0.237761 ACGACTTCGACGACTTCCAG 59.762 55.000 5.47 0.00 43.02 3.86
3812 7371 0.454117 GGACGACTTCGACGACTTCC 60.454 60.000 5.47 1.24 43.02 3.46
3813 7372 0.236711 TGGACGACTTCGACGACTTC 59.763 55.000 5.47 0.00 43.02 3.01
3887 10691 7.626390 TGGTAGCCAAGCTAAGTTATTTAGAA 58.374 34.615 0.00 0.00 43.07 2.10
3999 12194 1.376812 CGGGGTGACTGGCCTTTAC 60.377 63.158 3.32 0.00 0.00 2.01
4006 12201 3.849064 TTTTTGCGGGGTGACTGG 58.151 55.556 0.00 0.00 0.00 4.00
4025 12220 5.497474 CACACCTACTGGCCTTTATACTTT 58.503 41.667 3.32 0.00 36.63 2.66
4031 12226 1.060729 TGCACACCTACTGGCCTTTA 58.939 50.000 3.32 0.00 36.63 1.85
4032 12227 0.405585 ATGCACACCTACTGGCCTTT 59.594 50.000 3.32 0.00 36.63 3.11
4033 12228 0.322816 CATGCACACCTACTGGCCTT 60.323 55.000 3.32 0.00 36.63 4.35
4034 12229 1.200760 TCATGCACACCTACTGGCCT 61.201 55.000 3.32 0.00 36.63 5.19
4035 12230 0.745845 CTCATGCACACCTACTGGCC 60.746 60.000 0.00 0.00 36.63 5.36
4036 12231 1.372087 GCTCATGCACACCTACTGGC 61.372 60.000 0.00 0.00 39.41 4.85
4037 12232 1.086067 CGCTCATGCACACCTACTGG 61.086 60.000 0.00 0.00 39.64 4.00
4038 12233 1.086067 CCGCTCATGCACACCTACTG 61.086 60.000 0.00 0.00 39.64 2.74
4041 12236 2.584064 CCCGCTCATGCACACCTA 59.416 61.111 0.00 0.00 39.64 3.08
4107 12308 2.031314 CAGCTATCTGTTTGTCCATGCG 59.969 50.000 0.00 0.00 35.61 4.73
4119 12320 1.032794 TCCACGTAGGCAGCTATCTG 58.967 55.000 0.00 0.00 43.16 2.90
4160 12381 1.579964 CCACACACATGCACGCAGAT 61.580 55.000 0.00 0.00 0.00 2.90
4161 12382 2.253051 CCACACACATGCACGCAGA 61.253 57.895 0.00 0.00 0.00 4.26
4162 12383 2.253154 CCACACACATGCACGCAG 59.747 61.111 0.00 0.00 0.00 5.18
4163 12384 3.285982 CCCACACACATGCACGCA 61.286 61.111 0.00 0.00 0.00 5.24
4164 12385 2.977456 TCCCACACACATGCACGC 60.977 61.111 0.00 0.00 0.00 5.34
4165 12386 2.616330 GGTCCCACACACATGCACG 61.616 63.158 0.00 0.00 0.00 5.34
4166 12387 2.616330 CGGTCCCACACACATGCAC 61.616 63.158 0.00 0.00 0.00 4.57
4167 12388 2.281414 CGGTCCCACACACATGCA 60.281 61.111 0.00 0.00 0.00 3.96
4168 12389 3.055719 CCGGTCCCACACACATGC 61.056 66.667 0.00 0.00 0.00 4.06
4169 12390 3.055719 GCCGGTCCCACACACATG 61.056 66.667 1.90 0.00 0.00 3.21
4170 12391 4.697756 CGCCGGTCCCACACACAT 62.698 66.667 1.90 0.00 0.00 3.21
4222 12443 1.860078 CACGCCAGTTTTCTCGACC 59.140 57.895 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.