Multiple sequence alignment - TraesCS1B01G084000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G084000 chr1B 100.000 3880 0 0 1 3880 68088757 68084878 0.000000e+00 7166
1 TraesCS1B01G084000 chr1A 85.904 3242 211 92 747 3880 48594946 48591843 0.000000e+00 3229
2 TraesCS1B01G084000 chr1A 84.593 344 20 15 419 731 48598315 48597974 1.050000e-80 311
3 TraesCS1B01G084000 chr1A 84.524 252 27 7 35 275 547023857 547023607 5.010000e-59 239
4 TraesCS1B01G084000 chr1A 87.500 128 13 1 2303 2427 48593330 48593203 1.120000e-30 145
5 TraesCS1B01G084000 chr1D 90.546 1428 90 17 1067 2472 48404912 48403508 0.000000e+00 1847
6 TraesCS1B01G084000 chr1D 87.129 1616 84 41 2303 3874 48403632 48402097 0.000000e+00 1718
7 TraesCS1B01G084000 chr1D 84.650 658 36 29 269 868 48405760 48405110 2.580000e-166 595
8 TraesCS1B01G084000 chr3D 88.693 283 22 5 1 275 50542372 50542652 1.730000e-88 337
9 TraesCS1B01G084000 chr7B 87.625 299 21 7 1 286 36565340 36565635 2.230000e-87 333
10 TraesCS1B01G084000 chr7B 90.367 218 11 2 10 217 198936247 198936030 1.060000e-70 278
11 TraesCS1B01G084000 chr2B 88.028 284 22 5 1 274 746130927 746131208 3.740000e-85 326
12 TraesCS1B01G084000 chr7D 86.926 283 25 4 1 272 170587001 170586720 1.350000e-79 307
13 TraesCS1B01G084000 chr7D 85.263 285 29 4 1 274 373243548 373243830 8.210000e-72 281
14 TraesCS1B01G084000 chr7D 84.677 248 24 8 37 272 159702190 159702435 6.480000e-58 235
15 TraesCS1B01G084000 chr6B 86.517 267 32 3 8 272 161466463 161466199 1.360000e-74 291
16 TraesCS1B01G084000 chr3B 86.182 275 27 3 8 272 165819592 165819865 1.760000e-73 287
17 TraesCS1B01G084000 chr4B 85.551 263 27 3 1 253 128014463 128014724 8.270000e-67 265
18 TraesCS1B01G084000 chr4A 86.667 225 16 8 25 236 697567640 697567417 1.800000e-58 237
19 TraesCS1B01G084000 chr4A 82.353 272 32 7 16 272 583981983 583982253 5.050000e-54 222
20 TraesCS1B01G084000 chr2A 81.379 290 34 9 1 279 559107770 559108050 6.530000e-53 219
21 TraesCS1B01G084000 chr5A 81.227 277 33 8 8 272 510477969 510477700 5.080000e-49 206
22 TraesCS1B01G084000 chr3A 79.371 286 41 10 5 274 76202903 76203186 6.620000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G084000 chr1B 68084878 68088757 3879 True 7166.000000 7166 100.000000 1 3880 1 chr1B.!!$R1 3879
1 TraesCS1B01G084000 chr1A 48591843 48594946 3103 True 1687.000000 3229 86.702000 747 3880 2 chr1A.!!$R3 3133
2 TraesCS1B01G084000 chr1D 48402097 48405760 3663 True 1386.666667 1847 87.441667 269 3874 3 chr1D.!!$R1 3605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.025770 AACGCGTCAGTTCGTTTGTG 59.974 50.0 14.44 0.0 45.25 3.33 F
255 256 0.042448 GTCAGTTCGTTTGTGTCGGC 60.042 55.0 0.00 0.0 0.00 5.54 F
768 816 0.114560 AGGAGAGGTCGGAGGTGAAA 59.885 55.0 0.00 0.0 0.00 2.69 F
1724 1943 0.251297 CCAAGGTCACCTGCATTGGA 60.251 55.0 6.44 0.0 42.46 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1644 0.318275 GAGGTAGCGAGCGGAAGATG 60.318 60.0 0.00 0.0 0.00 2.90 R
1462 1645 0.466555 AGAGGTAGCGAGCGGAAGAT 60.467 55.0 0.00 0.0 0.00 2.40 R
2570 2843 0.028242 CTTCGTCATCCTCCTCGTCG 59.972 60.0 0.00 0.0 0.00 5.12 R
3318 3642 0.035176 GGCACGGTTACCACCAGTAA 59.965 55.0 1.13 0.0 44.53 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.769228 GCAACGTGTCGTCTAGTCT 57.231 52.632 0.00 0.00 39.99 3.24
19 20 2.047679 GCAACGTGTCGTCTAGTCTT 57.952 50.000 0.00 0.00 39.99 3.01
20 21 2.391879 GCAACGTGTCGTCTAGTCTTT 58.608 47.619 0.00 0.00 39.99 2.52
21 22 3.558505 GCAACGTGTCGTCTAGTCTTTA 58.441 45.455 0.00 0.00 39.99 1.85
22 23 3.602915 GCAACGTGTCGTCTAGTCTTTAG 59.397 47.826 0.00 0.00 39.99 1.85
23 24 4.781071 CAACGTGTCGTCTAGTCTTTAGT 58.219 43.478 0.00 0.00 39.99 2.24
24 25 4.401525 ACGTGTCGTCTAGTCTTTAGTG 57.598 45.455 0.00 0.00 33.69 2.74
25 26 3.812053 ACGTGTCGTCTAGTCTTTAGTGT 59.188 43.478 0.00 0.00 33.69 3.55
26 27 4.274459 ACGTGTCGTCTAGTCTTTAGTGTT 59.726 41.667 0.00 0.00 33.69 3.32
27 28 5.210715 CGTGTCGTCTAGTCTTTAGTGTTT 58.789 41.667 0.00 0.00 0.00 2.83
28 29 5.684626 CGTGTCGTCTAGTCTTTAGTGTTTT 59.315 40.000 0.00 0.00 0.00 2.43
29 30 6.197842 CGTGTCGTCTAGTCTTTAGTGTTTTT 59.802 38.462 0.00 0.00 0.00 1.94
30 31 7.376866 CGTGTCGTCTAGTCTTTAGTGTTTTTA 59.623 37.037 0.00 0.00 0.00 1.52
31 32 9.189723 GTGTCGTCTAGTCTTTAGTGTTTTTAT 57.810 33.333 0.00 0.00 0.00 1.40
32 33 9.188588 TGTCGTCTAGTCTTTAGTGTTTTTATG 57.811 33.333 0.00 0.00 0.00 1.90
33 34 8.160976 GTCGTCTAGTCTTTAGTGTTTTTATGC 58.839 37.037 0.00 0.00 0.00 3.14
34 35 8.086522 TCGTCTAGTCTTTAGTGTTTTTATGCT 58.913 33.333 0.00 0.00 0.00 3.79
35 36 9.350357 CGTCTAGTCTTTAGTGTTTTTATGCTA 57.650 33.333 0.00 0.00 0.00 3.49
57 58 8.682710 TGCTAATTAATGTAATGTGGACTTTCC 58.317 33.333 0.00 0.00 36.96 3.13
58 59 8.135529 GCTAATTAATGTAATGTGGACTTTCCC 58.864 37.037 0.00 0.00 35.03 3.97
59 60 7.418337 AATTAATGTAATGTGGACTTTCCCC 57.582 36.000 0.00 0.00 35.03 4.81
60 61 2.483014 TGTAATGTGGACTTTCCCCG 57.517 50.000 0.00 0.00 35.03 5.73
61 62 1.003812 TGTAATGTGGACTTTCCCCGG 59.996 52.381 0.00 0.00 35.03 5.73
62 63 0.034863 TAATGTGGACTTTCCCCGGC 60.035 55.000 0.00 0.00 35.03 6.13
63 64 2.781431 AATGTGGACTTTCCCCGGCC 62.781 60.000 0.00 0.00 35.03 6.13
64 65 3.647771 GTGGACTTTCCCCGGCCT 61.648 66.667 0.00 0.00 35.03 5.19
65 66 2.856988 TGGACTTTCCCCGGCCTT 60.857 61.111 0.00 0.00 35.03 4.35
66 67 2.045242 GGACTTTCCCCGGCCTTC 60.045 66.667 0.00 0.00 0.00 3.46
67 68 2.436115 GACTTTCCCCGGCCTTCG 60.436 66.667 0.00 0.00 38.88 3.79
68 69 3.246880 ACTTTCCCCGGCCTTCGT 61.247 61.111 0.00 0.00 37.11 3.85
69 70 2.746277 CTTTCCCCGGCCTTCGTG 60.746 66.667 0.00 0.00 37.11 4.35
70 71 4.338710 TTTCCCCGGCCTTCGTGG 62.339 66.667 0.00 0.00 37.76 4.94
79 80 2.046700 CCTTCGTGGCCGGCTTTA 60.047 61.111 28.56 10.66 33.95 1.85
80 81 1.451387 CCTTCGTGGCCGGCTTTAT 60.451 57.895 28.56 0.00 33.95 1.40
81 82 1.714899 CCTTCGTGGCCGGCTTTATG 61.715 60.000 28.56 17.85 33.95 1.90
82 83 1.003112 TTCGTGGCCGGCTTTATGT 60.003 52.632 28.56 0.00 33.95 2.29
83 84 0.606944 TTCGTGGCCGGCTTTATGTT 60.607 50.000 28.56 0.00 33.95 2.71
84 85 0.606944 TCGTGGCCGGCTTTATGTTT 60.607 50.000 28.56 0.00 33.95 2.83
85 86 1.088306 CGTGGCCGGCTTTATGTTTA 58.912 50.000 28.56 0.00 0.00 2.01
86 87 1.469308 CGTGGCCGGCTTTATGTTTAA 59.531 47.619 28.56 0.00 0.00 1.52
87 88 2.098443 CGTGGCCGGCTTTATGTTTAAT 59.902 45.455 28.56 0.00 0.00 1.40
88 89 3.428316 CGTGGCCGGCTTTATGTTTAATT 60.428 43.478 28.56 0.00 0.00 1.40
89 90 4.201930 CGTGGCCGGCTTTATGTTTAATTA 60.202 41.667 28.56 0.00 0.00 1.40
90 91 5.652518 GTGGCCGGCTTTATGTTTAATTAA 58.347 37.500 28.56 0.00 0.00 1.40
91 92 6.100668 GTGGCCGGCTTTATGTTTAATTAAA 58.899 36.000 28.56 6.54 0.00 1.52
92 93 6.759356 GTGGCCGGCTTTATGTTTAATTAAAT 59.241 34.615 28.56 1.99 0.00 1.40
93 94 6.758886 TGGCCGGCTTTATGTTTAATTAAATG 59.241 34.615 28.56 2.91 0.00 2.32
94 95 6.292649 GGCCGGCTTTATGTTTAATTAAATGC 60.293 38.462 28.56 10.61 0.00 3.56
95 96 6.256757 GCCGGCTTTATGTTTAATTAAATGCA 59.743 34.615 22.15 8.51 0.00 3.96
96 97 7.042119 GCCGGCTTTATGTTTAATTAAATGCAT 60.042 33.333 22.15 14.28 0.00 3.96
97 98 8.274939 CCGGCTTTATGTTTAATTAAATGCATG 58.725 33.333 13.54 4.22 0.00 4.06
98 99 8.816144 CGGCTTTATGTTTAATTAAATGCATGT 58.184 29.630 13.54 0.00 0.00 3.21
136 137 3.911989 TTTTTACGCGCCGACAAAA 57.088 42.105 5.73 2.50 0.00 2.44
137 138 2.402640 TTTTTACGCGCCGACAAAAT 57.597 40.000 5.73 0.00 30.20 1.82
138 139 3.532892 TTTTTACGCGCCGACAAAATA 57.467 38.095 5.73 0.00 30.20 1.40
139 140 2.791417 TTTACGCGCCGACAAAATAG 57.209 45.000 5.73 0.00 0.00 1.73
140 141 1.000884 TTACGCGCCGACAAAATAGG 58.999 50.000 5.73 0.00 0.00 2.57
141 142 0.108709 TACGCGCCGACAAAATAGGT 60.109 50.000 5.73 0.00 0.00 3.08
142 143 1.347221 CGCGCCGACAAAATAGGTC 59.653 57.895 0.00 0.00 0.00 3.85
150 151 2.210961 GACAAAATAGGTCGGGCTAGC 58.789 52.381 6.04 6.04 0.00 3.42
151 152 1.217882 CAAAATAGGTCGGGCTAGCG 58.782 55.000 9.00 0.00 0.00 4.26
152 153 0.828677 AAAATAGGTCGGGCTAGCGT 59.171 50.000 9.00 0.00 0.00 5.07
153 154 0.828677 AAATAGGTCGGGCTAGCGTT 59.171 50.000 9.00 0.00 0.00 4.84
154 155 0.104304 AATAGGTCGGGCTAGCGTTG 59.896 55.000 9.00 0.54 0.00 4.10
155 156 1.745320 ATAGGTCGGGCTAGCGTTGG 61.745 60.000 9.00 0.00 0.00 3.77
156 157 2.842188 TAGGTCGGGCTAGCGTTGGA 62.842 60.000 9.00 0.00 0.00 3.53
157 158 2.508663 GTCGGGCTAGCGTTGGAC 60.509 66.667 9.00 9.21 0.00 4.02
158 159 4.124351 TCGGGCTAGCGTTGGACG 62.124 66.667 9.00 6.45 45.88 4.79
175 176 4.135493 GCTCGCGCCGACTCAAAC 62.135 66.667 0.00 0.00 0.00 2.93
176 177 2.733218 CTCGCGCCGACTCAAACA 60.733 61.111 0.00 0.00 0.00 2.83
177 178 3.000080 CTCGCGCCGACTCAAACAC 62.000 63.158 0.00 0.00 0.00 3.32
178 179 3.334751 CGCGCCGACTCAAACACA 61.335 61.111 0.00 0.00 0.00 3.72
179 180 2.551270 GCGCCGACTCAAACACAG 59.449 61.111 0.00 0.00 0.00 3.66
180 181 2.551270 CGCCGACTCAAACACAGC 59.449 61.111 0.00 0.00 0.00 4.40
181 182 2.551270 GCCGACTCAAACACAGCG 59.449 61.111 0.00 0.00 0.00 5.18
182 183 2.551270 CCGACTCAAACACAGCGC 59.449 61.111 0.00 0.00 0.00 5.92
183 184 2.551270 CGACTCAAACACAGCGCC 59.449 61.111 2.29 0.00 0.00 6.53
184 185 2.551270 GACTCAAACACAGCGCCG 59.449 61.111 2.29 0.00 0.00 6.46
185 186 2.954753 GACTCAAACACAGCGCCGG 61.955 63.158 2.29 0.00 0.00 6.13
186 187 2.664851 CTCAAACACAGCGCCGGA 60.665 61.111 5.05 0.00 0.00 5.14
187 188 2.954753 CTCAAACACAGCGCCGGAC 61.955 63.158 5.05 0.00 0.00 4.79
189 190 4.903010 AAACACAGCGCCGGACGT 62.903 61.111 5.05 0.00 46.11 4.34
190 191 4.903010 AACACAGCGCCGGACGTT 62.903 61.111 5.05 3.20 46.11 3.99
191 192 4.903010 ACACAGCGCCGGACGTTT 62.903 61.111 5.05 0.00 46.11 3.60
192 193 4.368808 CACAGCGCCGGACGTTTG 62.369 66.667 5.05 13.47 46.11 2.93
193 194 4.903010 ACAGCGCCGGACGTTTGT 62.903 61.111 5.05 14.09 46.11 2.83
194 195 4.368808 CAGCGCCGGACGTTTGTG 62.369 66.667 5.05 1.98 46.11 3.33
195 196 4.903010 AGCGCCGGACGTTTGTGT 62.903 61.111 5.05 0.00 46.11 3.72
196 197 4.364409 GCGCCGGACGTTTGTGTC 62.364 66.667 5.05 0.00 46.11 3.67
197 198 2.660552 CGCCGGACGTTTGTGTCT 60.661 61.111 5.05 0.00 38.91 3.41
198 199 2.935955 GCCGGACGTTTGTGTCTG 59.064 61.111 5.05 0.00 43.47 3.51
199 200 2.935955 CCGGACGTTTGTGTCTGC 59.064 61.111 0.00 0.00 42.68 4.26
200 201 2.604174 CCGGACGTTTGTGTCTGCC 61.604 63.158 0.00 0.00 42.68 4.85
201 202 2.935955 GGACGTTTGTGTCTGCCG 59.064 61.111 0.00 0.00 38.91 5.69
202 203 2.604174 GGACGTTTGTGTCTGCCGG 61.604 63.158 0.00 0.00 38.91 6.13
203 204 1.593209 GACGTTTGTGTCTGCCGGA 60.593 57.895 5.05 0.00 35.95 5.14
204 205 1.828331 GACGTTTGTGTCTGCCGGAC 61.828 60.000 5.05 0.00 44.70 4.79
205 206 2.604174 CGTTTGTGTCTGCCGGACC 61.604 63.158 5.05 0.00 43.89 4.46
206 207 2.280524 TTTGTGTCTGCCGGACCG 60.281 61.111 5.05 6.99 43.89 4.79
207 208 2.798364 TTTGTGTCTGCCGGACCGA 61.798 57.895 17.49 0.00 43.89 4.69
208 209 2.981977 TTTGTGTCTGCCGGACCGAC 62.982 60.000 17.49 3.64 43.89 4.79
209 210 4.736896 GTGTCTGCCGGACCGACC 62.737 72.222 17.49 6.51 43.89 4.79
213 214 4.323477 CTGCCGGACCGACCCAAA 62.323 66.667 17.49 0.00 34.64 3.28
214 215 4.629523 TGCCGGACCGACCCAAAC 62.630 66.667 17.49 0.00 34.64 2.93
240 241 2.867456 AAAACGGATAAACGCGTCAG 57.133 45.000 14.44 2.75 37.37 3.51
241 242 1.787012 AAACGGATAAACGCGTCAGT 58.213 45.000 14.44 3.52 37.37 3.41
242 243 1.787012 AACGGATAAACGCGTCAGTT 58.213 45.000 14.44 10.42 37.37 3.16
243 244 1.343506 ACGGATAAACGCGTCAGTTC 58.656 50.000 14.44 7.57 37.37 3.01
244 245 0.293723 CGGATAAACGCGTCAGTTCG 59.706 55.000 14.44 11.04 32.43 3.95
245 246 1.343506 GGATAAACGCGTCAGTTCGT 58.656 50.000 14.44 0.00 41.06 3.85
249 250 2.375981 AACGCGTCAGTTCGTTTGT 58.624 47.368 14.44 0.00 45.25 2.83
250 251 0.025770 AACGCGTCAGTTCGTTTGTG 59.974 50.000 14.44 0.00 45.25 3.33
251 252 1.079875 ACGCGTCAGTTCGTTTGTGT 61.080 50.000 5.58 0.00 35.09 3.72
252 253 0.381428 CGCGTCAGTTCGTTTGTGTC 60.381 55.000 0.00 0.00 0.00 3.67
253 254 0.381428 GCGTCAGTTCGTTTGTGTCG 60.381 55.000 0.00 0.00 0.00 4.35
254 255 0.228742 CGTCAGTTCGTTTGTGTCGG 59.771 55.000 0.00 0.00 0.00 4.79
255 256 0.042448 GTCAGTTCGTTTGTGTCGGC 60.042 55.000 0.00 0.00 0.00 5.54
256 257 1.155424 TCAGTTCGTTTGTGTCGGCC 61.155 55.000 0.00 0.00 0.00 6.13
257 258 1.890510 AGTTCGTTTGTGTCGGCCC 60.891 57.895 0.00 0.00 0.00 5.80
258 259 2.181521 GTTCGTTTGTGTCGGCCCA 61.182 57.895 0.00 0.00 0.00 5.36
259 260 1.228003 TTCGTTTGTGTCGGCCCAT 60.228 52.632 0.00 0.00 0.00 4.00
260 261 0.820074 TTCGTTTGTGTCGGCCCATT 60.820 50.000 0.00 0.00 0.00 3.16
261 262 1.081509 CGTTTGTGTCGGCCCATTG 60.082 57.895 0.00 0.00 0.00 2.82
262 263 1.791103 CGTTTGTGTCGGCCCATTGT 61.791 55.000 0.00 0.00 0.00 2.71
263 264 1.240256 GTTTGTGTCGGCCCATTGTA 58.760 50.000 0.00 0.00 0.00 2.41
264 265 1.199097 GTTTGTGTCGGCCCATTGTAG 59.801 52.381 0.00 0.00 0.00 2.74
265 266 0.398696 TTGTGTCGGCCCATTGTAGT 59.601 50.000 0.00 0.00 0.00 2.73
266 267 0.398696 TGTGTCGGCCCATTGTAGTT 59.601 50.000 0.00 0.00 0.00 2.24
267 268 0.802494 GTGTCGGCCCATTGTAGTTG 59.198 55.000 0.00 0.00 0.00 3.16
268 269 0.958382 TGTCGGCCCATTGTAGTTGC 60.958 55.000 0.00 0.00 0.00 4.17
269 270 0.676782 GTCGGCCCATTGTAGTTGCT 60.677 55.000 0.00 0.00 0.00 3.91
270 271 0.392461 TCGGCCCATTGTAGTTGCTC 60.392 55.000 0.00 0.00 0.00 4.26
271 272 0.392998 CGGCCCATTGTAGTTGCTCT 60.393 55.000 0.00 0.00 0.00 4.09
272 273 1.134521 CGGCCCATTGTAGTTGCTCTA 60.135 52.381 0.00 0.00 0.00 2.43
273 274 2.679639 CGGCCCATTGTAGTTGCTCTAA 60.680 50.000 0.00 0.00 0.00 2.10
274 275 3.555966 GGCCCATTGTAGTTGCTCTAAT 58.444 45.455 0.00 0.00 0.00 1.73
312 313 1.062002 ACGAGTAAAAATCGCCGCATG 59.938 47.619 0.00 0.00 43.91 4.06
313 314 1.062002 CGAGTAAAAATCGCCGCATGT 59.938 47.619 0.00 0.00 32.81 3.21
314 315 2.283086 CGAGTAAAAATCGCCGCATGTA 59.717 45.455 0.00 0.00 32.81 2.29
315 316 3.604392 GAGTAAAAATCGCCGCATGTAC 58.396 45.455 0.00 0.00 0.00 2.90
349 350 1.915614 GACGCTCAACATGGGCACTG 61.916 60.000 2.80 0.00 46.28 3.66
360 361 4.530857 GGCACTGCCGAGGCGTAT 62.531 66.667 3.73 0.00 45.51 3.06
395 396 3.093057 GAGAGATCTACGGGGTGCATAT 58.907 50.000 0.00 0.00 0.00 1.78
396 397 2.828520 AGAGATCTACGGGGTGCATATG 59.171 50.000 0.00 0.00 0.00 1.78
397 398 1.902508 AGATCTACGGGGTGCATATGG 59.097 52.381 4.56 0.00 0.00 2.74
441 471 3.284251 TGGGAGAGGGGCAGAGGA 61.284 66.667 0.00 0.00 0.00 3.71
457 487 0.526662 AGGACGACGGATGAGTGAAC 59.473 55.000 0.00 0.00 0.00 3.18
459 489 0.167470 GACGACGGATGAGTGAACGA 59.833 55.000 0.00 0.00 0.00 3.85
477 507 3.054166 ACGAACGAAACGATTGATGTGA 58.946 40.909 0.14 0.00 34.70 3.58
478 508 3.491639 ACGAACGAAACGATTGATGTGAA 59.508 39.130 0.14 0.00 34.70 3.18
502 532 3.058914 CGAAAGAAGCTTTGTTGGACGAT 60.059 43.478 0.00 0.00 0.00 3.73
558 589 0.249398 AAAAGAGATGGGACGTCGGG 59.751 55.000 9.92 0.00 0.00 5.14
560 591 4.222847 GAGATGGGACGTCGGGGC 62.223 72.222 9.92 0.00 0.00 5.80
577 612 4.869440 CGAGCTCGCAGGCAGGAG 62.869 72.222 25.07 0.00 34.17 3.69
631 668 2.038387 TCGATCAGATCACGTCCAGA 57.962 50.000 11.12 0.00 0.00 3.86
632 669 1.671328 TCGATCAGATCACGTCCAGAC 59.329 52.381 11.12 0.00 0.00 3.51
717 761 1.417890 CACCACACTCTTCCTCCAACT 59.582 52.381 0.00 0.00 0.00 3.16
768 816 0.114560 AGGAGAGGTCGGAGGTGAAA 59.885 55.000 0.00 0.00 0.00 2.69
769 817 0.533032 GGAGAGGTCGGAGGTGAAAG 59.467 60.000 0.00 0.00 0.00 2.62
770 818 1.546961 GAGAGGTCGGAGGTGAAAGA 58.453 55.000 0.00 0.00 0.00 2.52
771 819 2.104170 GAGAGGTCGGAGGTGAAAGAT 58.896 52.381 0.00 0.00 0.00 2.40
775 823 1.486726 GGTCGGAGGTGAAAGATGGAT 59.513 52.381 0.00 0.00 0.00 3.41
861 916 2.362397 CACCTAGATCATGTACCGCTGT 59.638 50.000 0.00 0.00 0.00 4.40
865 920 1.134401 AGATCATGTACCGCTGTTGGG 60.134 52.381 0.00 0.00 0.00 4.12
872 955 1.467342 GTACCGCTGTTGGGTTCATTC 59.533 52.381 0.00 0.00 38.99 2.67
875 958 0.523072 CGCTGTTGGGTTCATTCCAG 59.477 55.000 0.00 0.00 35.48 3.86
884 967 9.573166 CTGTTGGGTTCATTCCAGAAATATATA 57.427 33.333 0.00 0.00 35.48 0.86
886 969 9.574516 GTTGGGTTCATTCCAGAAATATATACT 57.425 33.333 0.00 0.00 35.48 2.12
916 999 4.837860 TGGATGGAAGGTGCAGTTTTATTT 59.162 37.500 0.00 0.00 0.00 1.40
919 1002 7.035612 GGATGGAAGGTGCAGTTTTATTTAAG 58.964 38.462 0.00 0.00 0.00 1.85
925 1008 7.656707 AGGTGCAGTTTTATTTAAGCAAATG 57.343 32.000 0.00 0.00 35.88 2.32
948 1031 2.673775 TCCTCCAGAAAAACATGCCA 57.326 45.000 0.00 0.00 0.00 4.92
951 1034 2.159338 CCTCCAGAAAAACATGCCATCG 60.159 50.000 0.00 0.00 0.00 3.84
1056 1202 5.735733 TTATTAGGCAAATAACTCCCCCA 57.264 39.130 0.65 0.00 35.55 4.96
1093 1247 1.028130 TGTTGGCTTGTTGCATTCGA 58.972 45.000 0.00 0.00 45.15 3.71
1115 1269 7.946043 TCGAATGTAAATGTAGTTTCGACTTC 58.054 34.615 5.98 0.00 39.73 3.01
1116 1270 7.062605 TCGAATGTAAATGTAGTTTCGACTTCC 59.937 37.037 5.98 0.00 39.73 3.46
1152 1306 0.459489 TTGCAACAAACTCCACTGCC 59.541 50.000 0.00 0.00 31.92 4.85
1198 1355 9.771915 TTTTGCAAAAGAACTGAAATGAAAATC 57.228 25.926 20.46 0.00 0.00 2.17
1204 1371 6.246420 AGAACTGAAATGAAAATCGTGAGG 57.754 37.500 0.00 0.00 0.00 3.86
1220 1387 3.508840 GGCGGAATCTTGGCACGG 61.509 66.667 0.00 0.00 0.00 4.94
1234 1401 1.875963 CACGGAAGGCACATTCACC 59.124 57.895 0.00 0.00 0.00 4.02
1237 1404 2.046285 GGAAGGCACATTCACCGGG 61.046 63.158 6.32 0.00 0.00 5.73
1238 1405 1.303317 GAAGGCACATTCACCGGGT 60.303 57.895 6.32 0.00 0.00 5.28
1272 1450 2.640826 AGACATGGAGAACCGGGTTAAA 59.359 45.455 13.38 0.00 39.42 1.52
1286 1464 2.267192 GGTTAAACAGAGACCCTCCCT 58.733 52.381 0.00 0.00 0.00 4.20
1305 1483 8.322091 CCCTCCCTTAATCAGTAATATTGGTAG 58.678 40.741 0.00 0.00 0.00 3.18
1340 1518 3.711704 ACTGATCATAGTTAGTGGGTGGG 59.288 47.826 0.00 0.00 0.00 4.61
1456 1639 3.649277 AAGCCACTGGACGCTAGCG 62.649 63.158 34.27 34.27 46.03 4.26
1458 1641 4.135153 CCACTGGACGCTAGCGCT 62.135 66.667 35.63 22.77 44.19 5.92
1460 1643 4.180946 ACTGGACGCTAGCGCTCG 62.181 66.667 35.63 22.78 44.19 5.03
1464 1647 3.390823 GACGCTAGCGCTCGCATC 61.391 66.667 35.63 22.89 44.88 3.91
1465 1648 3.815569 GACGCTAGCGCTCGCATCT 62.816 63.158 35.63 14.84 44.88 2.90
1724 1943 0.251297 CCAAGGTCACCTGCATTGGA 60.251 55.000 6.44 0.00 42.46 3.53
1760 1979 1.979155 GGGGAAGAAGGGCAGCAAC 60.979 63.158 0.00 0.00 0.00 4.17
1876 2101 2.733218 CGACTTCGACCGCAAGCA 60.733 61.111 0.00 0.00 43.02 3.91
1878 2103 1.954146 GACTTCGACCGCAAGCACA 60.954 57.895 0.00 0.00 0.00 4.57
1879 2104 1.495584 GACTTCGACCGCAAGCACAA 61.496 55.000 0.00 0.00 0.00 3.33
2015 2240 2.284151 GAGGAGGAGGGGGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
2121 2349 3.663815 GAGTGCGAGGAGGGGGAGA 62.664 68.421 0.00 0.00 0.00 3.71
2177 2405 1.018226 CCAAGAACGCTCTGCTCCTG 61.018 60.000 0.00 0.00 30.03 3.86
2472 2745 2.672996 GCAAGCCGGACATGGTGT 60.673 61.111 5.05 0.00 0.00 4.16
2541 2814 3.265791 CAGGAAGACGAGGAAAAGATGG 58.734 50.000 0.00 0.00 0.00 3.51
2543 2816 3.003480 GGAAGACGAGGAAAAGATGGTG 58.997 50.000 0.00 0.00 0.00 4.17
2570 2843 3.164011 CACGAAGCCGACGACGAC 61.164 66.667 9.28 0.00 42.66 4.34
2573 2846 2.868787 GAAGCCGACGACGACGAC 60.869 66.667 20.63 9.67 42.66 4.34
2582 2855 2.172372 CGACGACGACGAGGAGGAT 61.172 63.158 15.32 0.00 42.66 3.24
2810 3086 1.784525 CTTTGACCGGTCACTGAGTC 58.215 55.000 36.40 7.84 39.66 3.36
2816 3092 0.811915 CCGGTCACTGAGTCAGTAGG 59.188 60.000 25.04 19.99 43.43 3.18
2817 3093 1.535833 CGGTCACTGAGTCAGTAGGT 58.464 55.000 25.04 0.75 43.43 3.08
2818 3094 1.200252 CGGTCACTGAGTCAGTAGGTG 59.800 57.143 25.04 13.97 43.43 4.00
2819 3095 1.546476 GGTCACTGAGTCAGTAGGTGG 59.454 57.143 25.04 12.78 43.43 4.61
2820 3096 1.546476 GTCACTGAGTCAGTAGGTGGG 59.454 57.143 25.04 12.07 43.43 4.61
2821 3097 0.898320 CACTGAGTCAGTAGGTGGGG 59.102 60.000 25.04 7.74 43.43 4.96
2822 3098 0.784495 ACTGAGTCAGTAGGTGGGGA 59.216 55.000 24.36 0.00 43.46 4.81
2823 3099 1.187087 CTGAGTCAGTAGGTGGGGAC 58.813 60.000 12.28 0.00 0.00 4.46
2912 3205 2.306512 ACGGTAAAGCTGTAATTCCCCA 59.693 45.455 0.00 0.00 34.32 4.96
2916 3212 4.324331 GGTAAAGCTGTAATTCCCCACTCT 60.324 45.833 0.00 0.00 0.00 3.24
2924 3220 4.352595 TGTAATTCCCCACTCTTTTCTCCA 59.647 41.667 0.00 0.00 0.00 3.86
2938 3234 3.801307 TTCTCCATCCATCCATCCATG 57.199 47.619 0.00 0.00 0.00 3.66
2940 3236 0.406750 TCCATCCATCCATCCATGCC 59.593 55.000 0.00 0.00 0.00 4.40
2941 3237 0.963856 CCATCCATCCATCCATGCCG 60.964 60.000 0.00 0.00 0.00 5.69
2942 3238 1.303888 ATCCATCCATCCATGCCGC 60.304 57.895 0.00 0.00 0.00 6.53
2943 3239 1.786407 ATCCATCCATCCATGCCGCT 61.786 55.000 0.00 0.00 0.00 5.52
2944 3240 1.970114 CCATCCATCCATGCCGCTC 60.970 63.158 0.00 0.00 0.00 5.03
2945 3241 2.031616 ATCCATCCATGCCGCTCG 59.968 61.111 0.00 0.00 0.00 5.03
2946 3242 3.541950 ATCCATCCATGCCGCTCGG 62.542 63.158 3.56 3.56 38.57 4.63
3005 3301 4.021016 AGTCACGCTGTAAATCTTCTCCTT 60.021 41.667 0.00 0.00 0.00 3.36
3016 3312 3.176924 TCTTCTCCTTCTGCCACTAGT 57.823 47.619 0.00 0.00 0.00 2.57
3020 3316 4.857130 TCTCCTTCTGCCACTAGTACTA 57.143 45.455 1.89 1.89 0.00 1.82
3030 3326 7.950512 TCTGCCACTAGTACTACTACTACTAG 58.049 42.308 0.00 9.95 45.03 2.57
3074 3374 1.535462 GCAAAGTGTGTAGCCACGATT 59.465 47.619 0.00 0.00 44.92 3.34
3077 3377 0.736325 AGTGTGTAGCCACGATTCGC 60.736 55.000 5.86 0.00 44.92 4.70
3083 3383 0.739462 TAGCCACGATTCGCCTGTTG 60.739 55.000 5.86 0.00 0.00 3.33
3104 3405 0.396435 TCCAACAATCTCTGGTGCGT 59.604 50.000 0.00 0.00 41.89 5.24
3123 3424 1.616865 GTCTGTGCCAGTACCAGTACA 59.383 52.381 10.41 4.09 38.48 2.90
3124 3425 1.893137 TCTGTGCCAGTACCAGTACAG 59.107 52.381 18.91 18.91 44.95 2.74
3128 3429 2.094338 GTGCCAGTACCAGTACAGTACC 60.094 54.545 17.77 7.77 40.83 3.34
3129 3430 2.173519 GCCAGTACCAGTACAGTACCA 58.826 52.381 17.77 0.00 40.83 3.25
3130 3431 2.764572 GCCAGTACCAGTACAGTACCAT 59.235 50.000 17.77 3.46 40.83 3.55
3131 3432 3.956199 GCCAGTACCAGTACAGTACCATA 59.044 47.826 17.77 0.00 40.83 2.74
3140 3441 7.506114 ACCAGTACAGTACCATACCAATAATG 58.494 38.462 7.13 0.00 0.00 1.90
3149 3450 5.952387 ACCATACCAATAATGTGGCATAGT 58.048 37.500 0.00 0.00 43.00 2.12
3150 3451 5.769662 ACCATACCAATAATGTGGCATAGTG 59.230 40.000 0.00 0.00 43.00 2.74
3162 3463 3.555956 GTGGCATAGTGTACATGTACTGC 59.444 47.826 30.69 28.87 37.00 4.40
3221 3522 1.816835 ACAGTGCCATGAATGAGCTTG 59.183 47.619 0.00 0.00 0.00 4.01
3222 3523 1.816835 CAGTGCCATGAATGAGCTTGT 59.183 47.619 0.00 0.00 0.00 3.16
3223 3524 2.089980 AGTGCCATGAATGAGCTTGTC 58.910 47.619 0.00 0.00 0.00 3.18
3225 3526 0.379669 GCCATGAATGAGCTTGTCCG 59.620 55.000 0.00 0.00 0.00 4.79
3234 3558 3.660111 GCTTGTCCGTGCACACCC 61.660 66.667 18.64 3.60 0.00 4.61
3246 3570 1.845809 GCACACCCGCTTCACTCAAG 61.846 60.000 0.00 0.00 34.85 3.02
3254 3578 0.041839 GCTTCACTCAAGTGTGCGTG 60.042 55.000 9.82 0.00 45.76 5.34
3256 3580 0.742635 TTCACTCAAGTGTGCGTGCA 60.743 50.000 9.82 0.00 45.76 4.57
3266 3590 3.175929 AGTGTGCGTGCAAACTTTTTAC 58.824 40.909 11.86 0.00 41.37 2.01
3267 3591 2.280445 GTGTGCGTGCAAACTTTTTACC 59.720 45.455 7.90 0.00 31.72 2.85
3270 3594 1.067974 GCGTGCAAACTTTTTACCCCT 59.932 47.619 0.00 0.00 0.00 4.79
3281 3605 0.104356 TTTACCCCTCACCCACTCCA 60.104 55.000 0.00 0.00 0.00 3.86
3295 3619 0.174389 ACTCCAGCAGCAGATGTACG 59.826 55.000 0.00 0.00 0.00 3.67
3296 3620 0.174389 CTCCAGCAGCAGATGTACGT 59.826 55.000 0.00 0.00 0.00 3.57
3297 3621 0.108662 TCCAGCAGCAGATGTACGTG 60.109 55.000 0.00 0.00 0.00 4.49
3298 3622 1.086067 CCAGCAGCAGATGTACGTGG 61.086 60.000 0.00 0.00 0.00 4.94
3301 3625 1.135139 AGCAGCAGATGTACGTGGTAG 59.865 52.381 0.00 0.00 0.00 3.18
3317 3641 5.221422 ACGTGGTAGTAGTACTAGCTAGGAG 60.221 48.000 29.96 20.80 46.31 3.69
3318 3642 5.221422 CGTGGTAGTAGTACTAGCTAGGAGT 60.221 48.000 29.96 20.95 46.31 3.85
3319 3643 6.591001 GTGGTAGTAGTACTAGCTAGGAGTT 58.409 44.000 29.96 10.10 46.31 3.01
3320 3644 7.470702 CGTGGTAGTAGTACTAGCTAGGAGTTA 60.471 44.444 29.96 9.11 46.31 2.24
3321 3645 7.655732 GTGGTAGTAGTACTAGCTAGGAGTTAC 59.344 44.444 29.96 19.16 46.31 2.50
3322 3646 7.566879 TGGTAGTAGTACTAGCTAGGAGTTACT 59.433 40.741 29.96 23.72 46.31 2.24
3323 3647 7.872483 GGTAGTAGTACTAGCTAGGAGTTACTG 59.128 44.444 26.35 5.22 43.69 2.74
3324 3648 6.829849 AGTAGTACTAGCTAGGAGTTACTGG 58.170 44.000 24.35 0.00 0.00 4.00
3325 3649 5.713760 AGTACTAGCTAGGAGTTACTGGT 57.286 43.478 24.35 3.12 0.00 4.00
3326 3650 5.438833 AGTACTAGCTAGGAGTTACTGGTG 58.561 45.833 24.35 0.00 0.00 4.17
3347 3671 0.110678 TAACCGTGCCCATGTTTGGA 59.889 50.000 0.00 0.00 46.92 3.53
3348 3672 1.178534 AACCGTGCCCATGTTTGGAG 61.179 55.000 0.00 0.00 46.92 3.86
3349 3673 2.342650 CCGTGCCCATGTTTGGAGG 61.343 63.158 0.00 0.00 46.92 4.30
3399 3724 3.038417 GATTCCGGGCAGCGATCG 61.038 66.667 11.69 11.69 0.00 3.69
3474 3799 2.509336 CTCGTAGTTGCAGGGCGG 60.509 66.667 0.00 0.00 0.00 6.13
3510 3835 1.212616 GACGCTTCTGATCCAATCCG 58.787 55.000 0.00 0.00 0.00 4.18
3521 3846 0.828022 TCCAATCCGAGCCACGTTAT 59.172 50.000 0.00 0.00 40.78 1.89
3522 3847 1.202486 TCCAATCCGAGCCACGTTATC 60.202 52.381 0.00 0.00 40.78 1.75
3561 3895 3.386592 GCCTGTGCTCTGAGGTCT 58.613 61.111 6.83 0.00 33.53 3.85
3562 3896 1.079266 GCCTGTGCTCTGAGGTCTG 60.079 63.158 6.83 0.00 33.53 3.51
3563 3897 1.539560 GCCTGTGCTCTGAGGTCTGA 61.540 60.000 6.83 0.00 33.53 3.27
3578 3912 2.140717 GTCTGAACCAACCACGGTAAG 58.859 52.381 0.00 0.00 38.76 2.34
3579 3913 2.040939 TCTGAACCAACCACGGTAAGA 58.959 47.619 0.00 0.00 38.76 2.10
3580 3914 2.435069 TCTGAACCAACCACGGTAAGAA 59.565 45.455 0.00 0.00 38.76 2.52
3583 3917 3.628487 TGAACCAACCACGGTAAGAAAAG 59.372 43.478 0.00 0.00 38.76 2.27
3585 3919 3.888583 ACCAACCACGGTAAGAAAAGAA 58.111 40.909 0.00 0.00 37.57 2.52
3612 3970 7.966339 AAAAATGGATCAGAGGAATTGATGA 57.034 32.000 0.00 0.00 35.50 2.92
3636 3994 1.963515 GTTTGACTTGGGAACATGGCT 59.036 47.619 0.00 0.00 43.73 4.75
3642 4000 2.089980 CTTGGGAACATGGCTTGAGAG 58.910 52.381 7.45 0.00 42.32 3.20
3659 4017 3.182967 GAGAGCCGACTAAACACTCATG 58.817 50.000 0.00 0.00 0.00 3.07
3660 4018 2.826128 AGAGCCGACTAAACACTCATGA 59.174 45.455 0.00 0.00 0.00 3.07
3728 4086 1.605457 CGCACTAGTTGACCTGCAGAA 60.605 52.381 17.39 0.00 0.00 3.02
3754 4114 2.341257 CAGGTCAGTGAGTGTGTATGC 58.659 52.381 0.00 0.00 0.00 3.14
3871 4231 3.748568 TGGATGTCATCTCGAGATCTACG 59.251 47.826 25.00 13.93 42.68 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.047679 AAGACTAGACGACACGTTGC 57.952 50.000 0.00 0.00 41.37 4.17
1 2 4.611782 CACTAAAGACTAGACGACACGTTG 59.388 45.833 0.00 0.00 41.37 4.10
2 3 4.274459 ACACTAAAGACTAGACGACACGTT 59.726 41.667 0.00 0.00 41.37 3.99
3 4 3.812053 ACACTAAAGACTAGACGACACGT 59.188 43.478 0.00 0.00 45.10 4.49
4 5 4.401525 ACACTAAAGACTAGACGACACG 57.598 45.455 0.00 0.00 0.00 4.49
5 6 7.460751 AAAAACACTAAAGACTAGACGACAC 57.539 36.000 0.00 0.00 0.00 3.67
6 7 9.188588 CATAAAAACACTAAAGACTAGACGACA 57.811 33.333 0.00 0.00 0.00 4.35
7 8 8.160976 GCATAAAAACACTAAAGACTAGACGAC 58.839 37.037 0.00 0.00 0.00 4.34
8 9 8.086522 AGCATAAAAACACTAAAGACTAGACGA 58.913 33.333 0.00 0.00 0.00 4.20
9 10 8.240883 AGCATAAAAACACTAAAGACTAGACG 57.759 34.615 0.00 0.00 0.00 4.18
31 32 8.682710 GGAAAGTCCACATTACATTAATTAGCA 58.317 33.333 0.00 0.00 36.28 3.49
32 33 8.135529 GGGAAAGTCCACATTACATTAATTAGC 58.864 37.037 0.00 0.00 38.64 3.09
33 34 8.630037 GGGGAAAGTCCACATTACATTAATTAG 58.370 37.037 0.00 0.00 40.54 1.73
34 35 7.283580 CGGGGAAAGTCCACATTACATTAATTA 59.716 37.037 0.00 0.00 41.00 1.40
35 36 6.096282 CGGGGAAAGTCCACATTACATTAATT 59.904 38.462 0.00 0.00 41.00 1.40
36 37 5.592688 CGGGGAAAGTCCACATTACATTAAT 59.407 40.000 0.00 0.00 41.00 1.40
37 38 4.944930 CGGGGAAAGTCCACATTACATTAA 59.055 41.667 0.00 0.00 41.00 1.40
38 39 4.519213 CGGGGAAAGTCCACATTACATTA 58.481 43.478 0.00 0.00 41.00 1.90
39 40 3.352648 CGGGGAAAGTCCACATTACATT 58.647 45.455 0.00 0.00 41.00 2.71
40 41 2.356741 CCGGGGAAAGTCCACATTACAT 60.357 50.000 0.00 0.00 41.00 2.29
41 42 1.003812 CCGGGGAAAGTCCACATTACA 59.996 52.381 0.00 0.00 41.00 2.41
42 43 1.746470 CCGGGGAAAGTCCACATTAC 58.254 55.000 0.00 0.00 41.00 1.89
43 44 0.034863 GCCGGGGAAAGTCCACATTA 60.035 55.000 2.18 0.00 41.00 1.90
44 45 1.304134 GCCGGGGAAAGTCCACATT 60.304 57.895 2.18 0.00 41.00 2.71
45 46 2.355115 GCCGGGGAAAGTCCACAT 59.645 61.111 2.18 0.00 41.00 3.21
46 47 3.961414 GGCCGGGGAAAGTCCACA 61.961 66.667 2.18 0.00 41.00 4.17
47 48 3.205851 AAGGCCGGGGAAAGTCCAC 62.206 63.158 2.18 0.00 38.64 4.02
48 49 2.856988 AAGGCCGGGGAAAGTCCA 60.857 61.111 2.18 0.00 38.64 4.02
49 50 2.045242 GAAGGCCGGGGAAAGTCC 60.045 66.667 2.18 0.00 35.23 3.85
50 51 2.436115 CGAAGGCCGGGGAAAGTC 60.436 66.667 2.18 0.00 33.91 3.01
51 52 3.246880 ACGAAGGCCGGGGAAAGT 61.247 61.111 2.18 0.00 43.93 2.66
52 53 2.746277 CACGAAGGCCGGGGAAAG 60.746 66.667 2.18 0.00 43.93 2.62
62 63 1.451387 ATAAAGCCGGCCACGAAGG 60.451 57.895 26.15 0.00 44.60 3.46
63 64 1.024579 ACATAAAGCCGGCCACGAAG 61.025 55.000 26.15 11.96 44.60 3.79
64 65 0.606944 AACATAAAGCCGGCCACGAA 60.607 50.000 26.15 4.71 44.60 3.85
65 66 0.606944 AAACATAAAGCCGGCCACGA 60.607 50.000 26.15 6.60 44.60 4.35
66 67 1.088306 TAAACATAAAGCCGGCCACG 58.912 50.000 26.15 10.27 40.55 4.94
67 68 3.793797 ATTAAACATAAAGCCGGCCAC 57.206 42.857 26.15 0.00 0.00 5.01
68 69 5.916661 TTAATTAAACATAAAGCCGGCCA 57.083 34.783 26.15 9.51 0.00 5.36
69 70 6.292649 GCATTTAATTAAACATAAAGCCGGCC 60.293 38.462 26.15 5.07 0.00 6.13
70 71 6.256757 TGCATTTAATTAAACATAAAGCCGGC 59.743 34.615 21.89 21.89 0.00 6.13
71 72 7.763172 TGCATTTAATTAAACATAAAGCCGG 57.237 32.000 12.74 0.00 0.00 6.13
72 73 8.816144 ACATGCATTTAATTAAACATAAAGCCG 58.184 29.630 12.74 3.69 0.00 5.52
118 119 2.402640 ATTTTGTCGGCGCGTAAAAA 57.597 40.000 8.43 6.35 32.20 1.94
119 120 2.159680 CCTATTTTGTCGGCGCGTAAAA 60.160 45.455 8.43 9.92 32.62 1.52
120 121 1.394227 CCTATTTTGTCGGCGCGTAAA 59.606 47.619 8.43 2.14 0.00 2.01
121 122 1.000884 CCTATTTTGTCGGCGCGTAA 58.999 50.000 8.43 0.00 0.00 3.18
122 123 0.108709 ACCTATTTTGTCGGCGCGTA 60.109 50.000 8.43 0.00 0.00 4.42
123 124 1.356527 GACCTATTTTGTCGGCGCGT 61.357 55.000 8.43 0.00 0.00 6.01
124 125 1.347221 GACCTATTTTGTCGGCGCG 59.653 57.895 0.00 0.00 0.00 6.86
130 131 2.210961 GCTAGCCCGACCTATTTTGTC 58.789 52.381 2.29 0.00 0.00 3.18
131 132 1.472728 CGCTAGCCCGACCTATTTTGT 60.473 52.381 9.66 0.00 0.00 2.83
132 133 1.217882 CGCTAGCCCGACCTATTTTG 58.782 55.000 9.66 0.00 0.00 2.44
133 134 0.828677 ACGCTAGCCCGACCTATTTT 59.171 50.000 9.66 0.00 0.00 1.82
134 135 0.828677 AACGCTAGCCCGACCTATTT 59.171 50.000 9.66 0.00 0.00 1.40
135 136 0.104304 CAACGCTAGCCCGACCTATT 59.896 55.000 9.66 0.00 0.00 1.73
136 137 1.740285 CAACGCTAGCCCGACCTAT 59.260 57.895 9.66 0.00 0.00 2.57
137 138 2.420568 CCAACGCTAGCCCGACCTA 61.421 63.158 9.66 0.00 0.00 3.08
138 139 3.771160 CCAACGCTAGCCCGACCT 61.771 66.667 9.66 0.00 0.00 3.85
139 140 3.766691 TCCAACGCTAGCCCGACC 61.767 66.667 9.66 0.00 0.00 4.79
140 141 2.508663 GTCCAACGCTAGCCCGAC 60.509 66.667 9.66 5.81 0.00 4.79
141 142 4.124351 CGTCCAACGCTAGCCCGA 62.124 66.667 9.66 0.00 33.65 5.14
159 160 2.733218 TGTTTGAGTCGGCGCGAG 60.733 61.111 12.10 2.11 36.23 5.03
160 161 3.033764 GTGTTTGAGTCGGCGCGA 61.034 61.111 12.10 0.00 0.00 5.87
161 162 3.281751 CTGTGTTTGAGTCGGCGCG 62.282 63.158 0.00 0.00 0.00 6.86
162 163 2.551270 CTGTGTTTGAGTCGGCGC 59.449 61.111 0.00 0.00 0.00 6.53
163 164 2.551270 GCTGTGTTTGAGTCGGCG 59.449 61.111 0.00 0.00 0.00 6.46
164 165 2.551270 CGCTGTGTTTGAGTCGGC 59.449 61.111 0.00 0.00 0.00 5.54
165 166 2.551270 GCGCTGTGTTTGAGTCGG 59.449 61.111 0.00 0.00 0.00 4.79
166 167 2.551270 GGCGCTGTGTTTGAGTCG 59.449 61.111 7.64 0.00 0.00 4.18
167 168 2.551270 CGGCGCTGTGTTTGAGTC 59.449 61.111 8.45 0.00 0.00 3.36
168 169 2.972505 CCGGCGCTGTGTTTGAGT 60.973 61.111 16.49 0.00 0.00 3.41
169 170 2.664851 TCCGGCGCTGTGTTTGAG 60.665 61.111 16.49 0.00 0.00 3.02
170 171 2.970324 GTCCGGCGCTGTGTTTGA 60.970 61.111 16.49 1.24 0.00 2.69
171 172 4.368808 CGTCCGGCGCTGTGTTTG 62.369 66.667 16.49 0.00 0.00 2.93
172 173 4.903010 ACGTCCGGCGCTGTGTTT 62.903 61.111 16.49 0.00 46.11 2.83
173 174 4.903010 AACGTCCGGCGCTGTGTT 62.903 61.111 16.49 13.60 46.11 3.32
174 175 4.903010 AAACGTCCGGCGCTGTGT 62.903 61.111 16.49 7.84 46.11 3.72
175 176 4.368808 CAAACGTCCGGCGCTGTG 62.369 66.667 16.49 6.93 46.11 3.66
176 177 4.903010 ACAAACGTCCGGCGCTGT 62.903 61.111 16.49 16.04 46.11 4.40
177 178 4.368808 CACAAACGTCCGGCGCTG 62.369 66.667 9.96 9.96 46.11 5.18
178 179 4.903010 ACACAAACGTCCGGCGCT 62.903 61.111 16.48 3.50 46.11 5.92
179 180 4.364409 GACACAAACGTCCGGCGC 62.364 66.667 16.48 0.00 46.11 6.53
181 182 2.935955 CAGACACAAACGTCCGGC 59.064 61.111 0.00 0.00 36.52 6.13
182 183 2.604174 GGCAGACACAAACGTCCGG 61.604 63.158 0.00 0.00 36.52 5.14
183 184 2.935955 GGCAGACACAAACGTCCG 59.064 61.111 0.00 0.00 36.52 4.79
184 185 2.604174 CCGGCAGACACAAACGTCC 61.604 63.158 0.00 0.00 36.52 4.79
185 186 1.593209 TCCGGCAGACACAAACGTC 60.593 57.895 0.00 0.00 36.08 4.34
186 187 1.885850 GTCCGGCAGACACAAACGT 60.886 57.895 0.00 0.00 45.55 3.99
187 188 2.935955 GTCCGGCAGACACAAACG 59.064 61.111 0.00 0.00 45.55 3.60
196 197 4.323477 TTTGGGTCGGTCCGGCAG 62.323 66.667 19.28 0.00 37.00 4.85
197 198 4.629523 GTTTGGGTCGGTCCGGCA 62.630 66.667 19.28 0.00 37.00 5.69
200 201 1.947597 TATCCGTTTGGGTCGGTCCG 61.948 60.000 4.39 4.39 46.86 4.79
201 202 0.249955 TTATCCGTTTGGGTCGGTCC 59.750 55.000 4.36 0.00 46.86 4.46
202 203 2.097680 TTTATCCGTTTGGGTCGGTC 57.902 50.000 4.36 0.00 46.86 4.79
203 204 2.565046 TTTTATCCGTTTGGGTCGGT 57.435 45.000 4.36 0.00 46.86 4.69
220 221 2.545106 ACTGACGCGTTTATCCGTTTTT 59.455 40.909 15.53 0.00 37.87 1.94
221 222 2.137523 ACTGACGCGTTTATCCGTTTT 58.862 42.857 15.53 0.00 37.87 2.43
222 223 1.787012 ACTGACGCGTTTATCCGTTT 58.213 45.000 15.53 0.00 37.87 3.60
223 224 1.723003 GAACTGACGCGTTTATCCGTT 59.277 47.619 15.53 9.28 37.87 4.44
224 225 1.343506 GAACTGACGCGTTTATCCGT 58.656 50.000 15.53 0.00 40.85 4.69
225 226 0.293723 CGAACTGACGCGTTTATCCG 59.706 55.000 15.53 11.48 0.00 4.18
226 227 1.343506 ACGAACTGACGCGTTTATCC 58.656 50.000 15.53 0.00 37.48 2.59
232 233 1.079875 ACACAAACGAACTGACGCGT 61.080 50.000 13.85 13.85 43.39 6.01
233 234 0.381428 GACACAAACGAACTGACGCG 60.381 55.000 3.53 3.53 36.70 6.01
234 235 0.381428 CGACACAAACGAACTGACGC 60.381 55.000 0.00 0.00 36.70 5.19
235 236 0.228742 CCGACACAAACGAACTGACG 59.771 55.000 0.00 0.00 39.31 4.35
236 237 0.042448 GCCGACACAAACGAACTGAC 60.042 55.000 0.00 0.00 0.00 3.51
237 238 1.155424 GGCCGACACAAACGAACTGA 61.155 55.000 0.00 0.00 0.00 3.41
238 239 1.278637 GGCCGACACAAACGAACTG 59.721 57.895 0.00 0.00 0.00 3.16
239 240 1.890510 GGGCCGACACAAACGAACT 60.891 57.895 0.00 0.00 0.00 3.01
240 241 1.512156 ATGGGCCGACACAAACGAAC 61.512 55.000 0.00 0.00 0.00 3.95
241 242 0.820074 AATGGGCCGACACAAACGAA 60.820 50.000 0.00 0.00 0.00 3.85
242 243 1.228003 AATGGGCCGACACAAACGA 60.228 52.632 0.00 0.00 0.00 3.85
243 244 1.081509 CAATGGGCCGACACAAACG 60.082 57.895 0.00 0.00 0.00 3.60
244 245 1.199097 CTACAATGGGCCGACACAAAC 59.801 52.381 0.00 0.00 0.00 2.93
245 246 1.202830 ACTACAATGGGCCGACACAAA 60.203 47.619 0.00 0.00 0.00 2.83
246 247 0.398696 ACTACAATGGGCCGACACAA 59.601 50.000 0.00 0.00 0.00 3.33
247 248 0.398696 AACTACAATGGGCCGACACA 59.601 50.000 0.00 0.00 0.00 3.72
248 249 0.802494 CAACTACAATGGGCCGACAC 59.198 55.000 0.00 0.00 0.00 3.67
249 250 0.958382 GCAACTACAATGGGCCGACA 60.958 55.000 0.00 0.00 0.00 4.35
250 251 0.676782 AGCAACTACAATGGGCCGAC 60.677 55.000 0.00 0.00 0.00 4.79
251 252 0.392461 GAGCAACTACAATGGGCCGA 60.392 55.000 0.00 0.00 0.00 5.54
252 253 0.392998 AGAGCAACTACAATGGGCCG 60.393 55.000 0.00 0.00 0.00 6.13
253 254 2.710096 TAGAGCAACTACAATGGGCC 57.290 50.000 0.00 0.00 0.00 5.80
254 255 3.947834 ACATTAGAGCAACTACAATGGGC 59.052 43.478 9.54 0.00 32.13 5.36
255 256 5.431765 AGACATTAGAGCAACTACAATGGG 58.568 41.667 9.54 0.00 32.13 4.00
256 257 5.525378 GGAGACATTAGAGCAACTACAATGG 59.475 44.000 9.54 0.00 32.13 3.16
257 258 5.233050 CGGAGACATTAGAGCAACTACAATG 59.767 44.000 0.00 0.00 33.34 2.82
258 259 5.352284 CGGAGACATTAGAGCAACTACAAT 58.648 41.667 0.00 0.00 0.00 2.71
259 260 4.744570 CGGAGACATTAGAGCAACTACAA 58.255 43.478 0.00 0.00 0.00 2.41
260 261 3.428999 GCGGAGACATTAGAGCAACTACA 60.429 47.826 0.00 0.00 0.00 2.74
261 262 3.117046 GCGGAGACATTAGAGCAACTAC 58.883 50.000 0.00 0.00 0.00 2.73
262 263 2.758423 TGCGGAGACATTAGAGCAACTA 59.242 45.455 0.00 0.00 0.00 2.24
263 264 1.550524 TGCGGAGACATTAGAGCAACT 59.449 47.619 0.00 0.00 0.00 3.16
264 265 2.010145 TGCGGAGACATTAGAGCAAC 57.990 50.000 0.00 0.00 0.00 4.17
265 266 2.168313 TCATGCGGAGACATTAGAGCAA 59.832 45.455 0.00 0.00 38.15 3.91
266 267 1.756538 TCATGCGGAGACATTAGAGCA 59.243 47.619 0.00 0.00 39.02 4.26
267 268 2.131183 GTCATGCGGAGACATTAGAGC 58.869 52.381 0.00 0.00 36.06 4.09
268 269 2.033424 TCGTCATGCGGAGACATTAGAG 59.967 50.000 9.16 0.00 41.72 2.43
269 270 2.021457 TCGTCATGCGGAGACATTAGA 58.979 47.619 9.16 0.00 41.72 2.10
270 271 2.492019 TCGTCATGCGGAGACATTAG 57.508 50.000 9.16 0.00 41.72 1.73
271 272 2.360801 TGATCGTCATGCGGAGACATTA 59.639 45.455 9.16 0.00 41.72 1.90
272 273 1.136891 TGATCGTCATGCGGAGACATT 59.863 47.619 9.16 0.00 41.72 2.71
273 274 0.746659 TGATCGTCATGCGGAGACAT 59.253 50.000 9.16 0.00 41.72 3.06
274 275 0.179137 GTGATCGTCATGCGGAGACA 60.179 55.000 9.16 2.03 41.72 3.41
299 300 2.350498 GTGTAGTACATGCGGCGATTTT 59.650 45.455 12.98 0.00 0.00 1.82
312 313 3.839247 GCGTCGTAGATCGTGTGTAGTAC 60.839 52.174 0.00 0.00 40.67 2.73
313 314 2.282555 GCGTCGTAGATCGTGTGTAGTA 59.717 50.000 0.00 0.00 40.67 1.82
314 315 1.061711 GCGTCGTAGATCGTGTGTAGT 59.938 52.381 0.00 0.00 40.67 2.73
315 316 1.326852 AGCGTCGTAGATCGTGTGTAG 59.673 52.381 0.00 0.00 40.67 2.74
373 374 1.101635 TGCACCCCGTAGATCTCTCG 61.102 60.000 0.00 5.86 0.00 4.04
395 396 4.776322 CCGCCCAAGACGATGCCA 62.776 66.667 0.00 0.00 0.00 4.92
425 455 2.766229 GTCCTCTGCCCCTCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
433 463 2.105128 CATCCGTCGTCCTCTGCC 59.895 66.667 0.00 0.00 0.00 4.85
441 471 0.594602 TTCGTTCACTCATCCGTCGT 59.405 50.000 0.00 0.00 0.00 4.34
448 478 2.734670 TCGTTTCGTTCGTTCACTCAT 58.265 42.857 0.00 0.00 0.00 2.90
457 487 3.698420 TCACATCAATCGTTTCGTTCG 57.302 42.857 0.00 0.00 0.00 3.95
459 489 4.025563 TCGTTTCACATCAATCGTTTCGTT 60.026 37.500 0.00 0.00 0.00 3.85
477 507 4.421058 GTCCAACAAAGCTTCTTTCGTTT 58.579 39.130 0.00 0.00 0.00 3.60
478 508 3.486875 CGTCCAACAAAGCTTCTTTCGTT 60.487 43.478 0.00 0.00 0.00 3.85
502 532 3.489355 TGCTCTGCTTTCCTTGATTTCA 58.511 40.909 0.00 0.00 0.00 2.69
560 591 4.869440 CTCCTGCCTGCGAGCTCG 62.869 72.222 31.37 31.37 43.27 5.03
577 612 4.684134 TGCCCCTCTGCTTTGCCC 62.684 66.667 0.00 0.00 0.00 5.36
581 616 0.998145 ATCTCTTGCCCCTCTGCTTT 59.002 50.000 0.00 0.00 0.00 3.51
631 668 3.626924 GCGGTGACAGGTGAGGGT 61.627 66.667 0.00 0.00 0.00 4.34
632 669 3.314331 AGCGGTGACAGGTGAGGG 61.314 66.667 0.00 0.00 0.00 4.30
686 730 1.227645 GTGTGGTGCACTCTGCTCA 60.228 57.895 17.98 1.49 45.31 4.26
701 745 2.104963 GGTCAAGTTGGAGGAAGAGTGT 59.895 50.000 2.34 0.00 0.00 3.55
717 761 0.473117 AGGGACGAAGGAAGGGTCAA 60.473 55.000 0.00 0.00 32.39 3.18
743 791 0.812412 CTCCGACCTCTCCTCTCGTC 60.812 65.000 0.00 0.00 0.00 4.20
745 793 1.525077 CCTCCGACCTCTCCTCTCG 60.525 68.421 0.00 0.00 0.00 4.04
768 816 1.051812 GTCGACCCATCCATCCATCT 58.948 55.000 3.51 0.00 0.00 2.90
769 817 0.319900 CGTCGACCCATCCATCCATC 60.320 60.000 10.58 0.00 0.00 3.51
770 818 1.748403 CGTCGACCCATCCATCCAT 59.252 57.895 10.58 0.00 0.00 3.41
771 819 2.431454 CCGTCGACCCATCCATCCA 61.431 63.158 10.58 0.00 0.00 3.41
775 823 3.387091 CCACCGTCGACCCATCCA 61.387 66.667 10.58 0.00 0.00 3.41
884 967 3.375699 CACCTTCCATCCAGTAGGTAGT 58.624 50.000 0.00 0.00 38.93 2.73
886 969 2.116238 GCACCTTCCATCCAGTAGGTA 58.884 52.381 0.00 0.00 38.93 3.08
887 970 0.912486 GCACCTTCCATCCAGTAGGT 59.088 55.000 0.00 0.00 41.58 3.08
901 984 7.441017 TCATTTGCTTAAATAAAACTGCACCT 58.559 30.769 0.00 0.00 0.00 4.00
916 999 7.537596 TTTTCTGGAGGAAATCATTTGCTTA 57.462 32.000 5.51 0.00 41.66 3.09
919 1002 5.990996 TGTTTTTCTGGAGGAAATCATTTGC 59.009 36.000 0.00 0.00 42.63 3.68
925 1008 4.021192 TGGCATGTTTTTCTGGAGGAAATC 60.021 41.667 0.00 0.00 42.63 2.17
929 1012 2.673775 TGGCATGTTTTTCTGGAGGA 57.326 45.000 0.00 0.00 0.00 3.71
935 1018 3.302365 CCAACGATGGCATGTTTTTCT 57.698 42.857 3.81 0.00 40.58 2.52
948 1031 0.447801 GAATGCAACGAGCCAACGAT 59.552 50.000 0.00 0.00 44.83 3.73
951 1034 1.797537 GCGAATGCAACGAGCCAAC 60.798 57.895 18.21 0.00 44.83 3.77
996 1082 9.406113 AGTCGTAGTACTCCAATATATATTCCC 57.594 37.037 0.00 0.00 0.00 3.97
1002 1088 9.616156 CCATCTAGTCGTAGTACTCCAATATAT 57.384 37.037 0.00 0.00 0.00 0.86
1003 1089 8.600668 ACCATCTAGTCGTAGTACTCCAATATA 58.399 37.037 0.00 0.00 0.00 0.86
1004 1090 7.390996 CACCATCTAGTCGTAGTACTCCAATAT 59.609 40.741 0.00 0.00 0.00 1.28
1005 1091 6.709397 CACCATCTAGTCGTAGTACTCCAATA 59.291 42.308 0.00 0.00 0.00 1.90
1006 1092 5.531659 CACCATCTAGTCGTAGTACTCCAAT 59.468 44.000 0.00 0.00 0.00 3.16
1007 1093 4.880120 CACCATCTAGTCGTAGTACTCCAA 59.120 45.833 0.00 0.00 0.00 3.53
1008 1094 4.080695 ACACCATCTAGTCGTAGTACTCCA 60.081 45.833 0.00 0.00 0.00 3.86
1049 1195 4.889995 GGACATATTCTTTTTCTGGGGGAG 59.110 45.833 0.00 0.00 0.00 4.30
1051 1197 4.871822 AGGACATATTCTTTTTCTGGGGG 58.128 43.478 0.00 0.00 0.00 5.40
1054 1200 7.092716 CCAACAAGGACATATTCTTTTTCTGG 58.907 38.462 0.00 0.00 41.22 3.86
1056 1202 6.494835 AGCCAACAAGGACATATTCTTTTTCT 59.505 34.615 0.00 0.00 41.22 2.52
1093 1247 8.504005 CAAGGAAGTCGAAACTACATTTACATT 58.496 33.333 0.00 0.00 33.48 2.71
1172 1329 9.771915 GATTTTCATTTCAGTTCTTTTGCAAAA 57.228 25.926 22.61 22.61 0.00 2.44
1173 1330 8.115520 CGATTTTCATTTCAGTTCTTTTGCAAA 58.884 29.630 8.05 8.05 0.00 3.68
1174 1331 7.277539 ACGATTTTCATTTCAGTTCTTTTGCAA 59.722 29.630 0.00 0.00 0.00 4.08
1175 1332 6.756074 ACGATTTTCATTTCAGTTCTTTTGCA 59.244 30.769 0.00 0.00 0.00 4.08
1179 1336 7.141363 CCTCACGATTTTCATTTCAGTTCTTT 58.859 34.615 0.00 0.00 0.00 2.52
1198 1355 2.464459 GCCAAGATTCCGCCTCACG 61.464 63.158 0.00 0.00 43.15 4.35
1204 1371 1.982073 CTTCCGTGCCAAGATTCCGC 61.982 60.000 0.00 0.00 0.00 5.54
1220 1387 1.303317 ACCCGGTGAATGTGCCTTC 60.303 57.895 0.00 0.00 0.00 3.46
1234 1401 3.024547 TGTCTTAGGATTCTCTGACCCG 58.975 50.000 4.46 0.00 0.00 5.28
1237 1404 5.596361 TCTCCATGTCTTAGGATTCTCTGAC 59.404 44.000 0.00 0.67 32.53 3.51
1238 1405 5.770919 TCTCCATGTCTTAGGATTCTCTGA 58.229 41.667 0.00 0.00 32.53 3.27
1272 1450 3.246167 ACTGATTAAGGGAGGGTCTCTGT 60.246 47.826 0.00 0.00 0.00 3.41
1311 1489 7.284944 ACCCACTAACTATGATCAGTGTACTAC 59.715 40.741 0.09 0.00 37.32 2.73
1314 1492 6.273825 CACCCACTAACTATGATCAGTGTAC 58.726 44.000 0.09 0.00 37.32 2.90
1315 1493 5.362717 CCACCCACTAACTATGATCAGTGTA 59.637 44.000 0.09 0.00 37.32 2.90
1316 1494 4.162320 CCACCCACTAACTATGATCAGTGT 59.838 45.833 0.09 0.00 37.32 3.55
1317 1495 4.443457 CCCACCCACTAACTATGATCAGTG 60.443 50.000 0.09 2.50 38.48 3.66
1321 1499 2.706190 AGCCCACCCACTAACTATGATC 59.294 50.000 0.00 0.00 0.00 2.92
1456 1639 3.326210 CGAGCGGAAGATGCGAGC 61.326 66.667 0.00 0.00 37.44 5.03
1457 1640 2.393989 TAGCGAGCGGAAGATGCGAG 62.394 60.000 0.00 0.00 37.44 5.03
1458 1641 2.478033 TAGCGAGCGGAAGATGCGA 61.478 57.895 0.00 0.00 37.44 5.10
1460 1643 1.951631 GGTAGCGAGCGGAAGATGC 60.952 63.158 0.00 0.00 0.00 3.91
1461 1644 0.318275 GAGGTAGCGAGCGGAAGATG 60.318 60.000 0.00 0.00 0.00 2.90
1462 1645 0.466555 AGAGGTAGCGAGCGGAAGAT 60.467 55.000 0.00 0.00 0.00 2.40
1464 1647 1.357334 GAGAGGTAGCGAGCGGAAG 59.643 63.158 0.00 0.00 0.00 3.46
1465 1648 2.119655 GGAGAGGTAGCGAGCGGAA 61.120 63.158 0.00 0.00 0.00 4.30
1787 2009 2.203938 TTCTCCTCCTTGGCCGGT 60.204 61.111 1.90 0.00 35.26 5.28
1871 2096 2.049802 CCCTTGCGCTTGTGCTTG 60.050 61.111 9.73 0.81 36.97 4.01
2043 2271 1.027792 GCCTTCTCGTCTCTCTCCGT 61.028 60.000 0.00 0.00 0.00 4.69
2472 2745 3.039588 GTCGTTGCTTTCCGCGGA 61.040 61.111 27.28 27.28 43.27 5.54
2474 2747 3.335259 CTCGTCGTTGCTTTCCGCG 62.335 63.158 0.00 0.00 43.27 6.46
2476 2749 0.435008 CTTCTCGTCGTTGCTTTCCG 59.565 55.000 0.00 0.00 0.00 4.30
2541 2814 0.235926 GCTTCGTGCTCTTGTTCCAC 59.764 55.000 0.00 0.00 38.95 4.02
2543 2816 1.869690 GGCTTCGTGCTCTTGTTCC 59.130 57.895 3.58 0.00 42.39 3.62
2570 2843 0.028242 CTTCGTCATCCTCCTCGTCG 59.972 60.000 0.00 0.00 0.00 5.12
2573 2846 1.298713 CGCTTCGTCATCCTCCTCG 60.299 63.158 0.00 0.00 0.00 4.63
2582 2855 1.133216 CTCATCTCTTCCGCTTCGTCA 59.867 52.381 0.00 0.00 0.00 4.35
2818 3094 1.608154 GAAACAGCTAGGGGTCCCC 59.392 63.158 20.85 20.85 45.90 4.81
2819 3095 1.608154 GGAAACAGCTAGGGGTCCC 59.392 63.158 0.00 0.00 0.00 4.46
2820 3096 1.608154 GGGAAACAGCTAGGGGTCC 59.392 63.158 0.00 0.00 0.00 4.46
2821 3097 1.221021 CGGGAAACAGCTAGGGGTC 59.779 63.158 0.00 0.00 0.00 4.46
2822 3098 0.252375 TACGGGAAACAGCTAGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
2823 3099 1.129058 ATACGGGAAACAGCTAGGGG 58.871 55.000 0.00 0.00 0.00 4.79
2824 3100 2.963782 AGTATACGGGAAACAGCTAGGG 59.036 50.000 0.00 0.00 0.00 3.53
2825 3101 4.826183 ACTAGTATACGGGAAACAGCTAGG 59.174 45.833 0.00 0.00 31.69 3.02
2826 3102 6.709846 ACTACTAGTATACGGGAAACAGCTAG 59.290 42.308 2.33 0.00 0.00 3.42
2827 3103 6.595682 ACTACTAGTATACGGGAAACAGCTA 58.404 40.000 2.33 0.00 0.00 3.32
2828 3104 5.444176 ACTACTAGTATACGGGAAACAGCT 58.556 41.667 2.33 0.00 0.00 4.24
2886 3175 4.632688 GGAATTACAGCTTTACCGTGCTAA 59.367 41.667 0.00 0.00 37.81 3.09
2912 3205 4.141298 GGATGGATGGATGGAGAAAAGAGT 60.141 45.833 0.00 0.00 0.00 3.24
2916 3212 4.476297 CATGGATGGATGGATGGAGAAAA 58.524 43.478 0.00 0.00 0.00 2.29
2924 3220 1.303888 GCGGCATGGATGGATGGAT 60.304 57.895 0.00 0.00 0.00 3.41
2941 3237 2.956964 CATCGTCTTCGCCCGAGC 60.957 66.667 0.00 0.00 36.41 5.03
2942 3238 2.956964 GCATCGTCTTCGCCCGAG 60.957 66.667 0.00 0.00 36.41 4.63
2943 3239 4.508128 GGCATCGTCTTCGCCCGA 62.508 66.667 0.00 0.00 40.07 5.14
2946 3242 0.459585 TTACAGGCATCGTCTTCGCC 60.460 55.000 0.00 0.00 46.62 5.54
2947 3243 1.355971 TTTACAGGCATCGTCTTCGC 58.644 50.000 0.00 0.00 36.96 4.70
2948 3244 3.678072 TCTTTTTACAGGCATCGTCTTCG 59.322 43.478 0.00 0.00 38.55 3.79
2949 3245 5.803020 ATCTTTTTACAGGCATCGTCTTC 57.197 39.130 0.00 0.00 0.00 2.87
2950 3246 6.575162 AAATCTTTTTACAGGCATCGTCTT 57.425 33.333 0.00 0.00 0.00 3.01
2951 3247 6.183360 CGTAAATCTTTTTACAGGCATCGTCT 60.183 38.462 8.76 0.00 44.91 4.18
2952 3248 5.957796 CGTAAATCTTTTTACAGGCATCGTC 59.042 40.000 8.76 0.00 44.91 4.20
2953 3249 5.410439 ACGTAAATCTTTTTACAGGCATCGT 59.590 36.000 8.76 0.00 44.91 3.73
2954 3250 5.864986 ACGTAAATCTTTTTACAGGCATCG 58.135 37.500 8.76 0.00 44.91 3.84
2955 3251 7.065443 AGGTACGTAAATCTTTTTACAGGCATC 59.935 37.037 0.00 0.00 44.91 3.91
3005 3301 6.805016 AGTAGTAGTAGTACTAGTGGCAGA 57.195 41.667 22.76 4.62 41.86 4.26
3039 3335 6.712998 ACACACTTTGCATAATACAGTGGTAA 59.287 34.615 0.00 0.00 39.39 2.85
3049 3345 4.701956 GTGGCTACACACTTTGCATAAT 57.298 40.909 0.00 0.00 46.90 1.28
3083 3383 1.667724 CGCACCAGAGATTGTTGGATC 59.332 52.381 0.00 0.00 37.89 3.36
3091 3392 0.671781 GCACAGACGCACCAGAGATT 60.672 55.000 0.00 0.00 0.00 2.40
3123 3424 5.381184 TGCCACATTATTGGTATGGTACT 57.619 39.130 0.00 0.00 39.09 2.73
3124 3425 6.940298 ACTATGCCACATTATTGGTATGGTAC 59.060 38.462 7.32 0.00 46.79 3.34
3128 3429 6.882610 ACACTATGCCACATTATTGGTATG 57.117 37.500 3.26 0.00 41.61 2.39
3129 3430 7.513856 TGTACACTATGCCACATTATTGGTAT 58.486 34.615 0.00 0.00 43.66 2.73
3130 3431 6.890293 TGTACACTATGCCACATTATTGGTA 58.110 36.000 0.00 0.00 39.09 3.25
3131 3432 5.750524 TGTACACTATGCCACATTATTGGT 58.249 37.500 0.00 0.00 39.09 3.67
3140 3441 3.555956 GCAGTACATGTACACTATGCCAC 59.444 47.826 32.02 9.10 38.48 5.01
3149 3450 6.605995 ACCTTCTGTATAGCAGTACATGTACA 59.394 38.462 32.02 15.89 45.23 2.90
3150 3451 7.040473 ACCTTCTGTATAGCAGTACATGTAC 57.960 40.000 25.51 25.51 45.23 2.90
3189 3490 7.517614 TTCATGGCACTGTTAAATCTACAAA 57.482 32.000 0.00 0.00 0.00 2.83
3222 3523 4.980805 GAAGCGGGTGTGCACGGA 62.981 66.667 13.13 0.00 42.74 4.69
3225 3526 2.591715 AGTGAAGCGGGTGTGCAC 60.592 61.111 10.75 10.75 37.31 4.57
3246 3570 2.280445 GGTAAAAAGTTTGCACGCACAC 59.720 45.455 0.00 0.00 0.00 3.82
3252 3576 3.491964 GGTGAGGGGTAAAAAGTTTGCAC 60.492 47.826 0.00 0.00 0.00 4.57
3254 3578 2.036733 GGGTGAGGGGTAAAAAGTTTGC 59.963 50.000 0.00 0.00 0.00 3.68
3256 3580 3.052414 AGTGGGTGAGGGGTAAAAAGTTT 60.052 43.478 0.00 0.00 0.00 2.66
3266 3590 3.721706 GCTGGAGTGGGTGAGGGG 61.722 72.222 0.00 0.00 0.00 4.79
3267 3591 2.930019 TGCTGGAGTGGGTGAGGG 60.930 66.667 0.00 0.00 0.00 4.30
3270 3594 2.848679 TGCTGCTGGAGTGGGTGA 60.849 61.111 0.00 0.00 0.00 4.02
3281 3605 1.135139 CTACCACGTACATCTGCTGCT 59.865 52.381 0.00 0.00 0.00 4.24
3295 3619 6.173427 ACTCCTAGCTAGTACTACTACCAC 57.827 45.833 19.31 0.00 0.00 4.16
3296 3620 6.821616 AACTCCTAGCTAGTACTACTACCA 57.178 41.667 19.31 0.00 0.00 3.25
3297 3621 7.872483 CAGTAACTCCTAGCTAGTACTACTACC 59.128 44.444 19.31 0.00 0.00 3.18
3298 3622 7.872483 CCAGTAACTCCTAGCTAGTACTACTAC 59.128 44.444 19.31 11.83 0.00 2.73
3301 3625 6.482973 CACCAGTAACTCCTAGCTAGTACTAC 59.517 46.154 19.31 13.62 0.00 2.73
3318 3642 0.035176 GGCACGGTTACCACCAGTAA 59.965 55.000 1.13 0.00 44.53 2.24
3319 3643 1.672898 GGCACGGTTACCACCAGTA 59.327 57.895 1.13 0.00 44.53 2.74
3320 3644 2.428622 GGCACGGTTACCACCAGT 59.571 61.111 1.13 0.00 44.53 4.00
3321 3645 2.359478 GGGCACGGTTACCACCAG 60.359 66.667 1.13 0.00 44.53 4.00
3322 3646 2.530672 ATGGGCACGGTTACCACCA 61.531 57.895 1.13 4.42 44.53 4.17
3323 3647 2.043980 CATGGGCACGGTTACCACC 61.044 63.158 1.13 0.00 37.05 4.61
3324 3648 0.891904 AACATGGGCACGGTTACCAC 60.892 55.000 1.13 0.00 37.05 4.16
3325 3649 0.178987 AAACATGGGCACGGTTACCA 60.179 50.000 1.13 3.32 38.88 3.25
3326 3650 0.242555 CAAACATGGGCACGGTTACC 59.757 55.000 0.00 0.00 0.00 2.85
3347 3671 1.355720 ACCTGTTATTTCTGCAGCCCT 59.644 47.619 9.47 0.00 0.00 5.19
3348 3672 1.745653 GACCTGTTATTTCTGCAGCCC 59.254 52.381 9.47 0.00 0.00 5.19
3349 3673 1.745653 GGACCTGTTATTTCTGCAGCC 59.254 52.381 9.47 0.00 0.00 4.85
3474 3799 1.153901 TCGCGGTCACGGATTCTTC 60.154 57.895 6.13 0.00 41.36 2.87
3510 3835 4.990257 TGTAGTGTAAGATAACGTGGCTC 58.010 43.478 0.00 0.00 0.00 4.70
3521 3846 6.320171 GCTTCTCGTGTAATGTAGTGTAAGA 58.680 40.000 0.00 0.00 0.00 2.10
3522 3847 5.515626 GGCTTCTCGTGTAATGTAGTGTAAG 59.484 44.000 0.00 0.00 0.00 2.34
3557 3891 0.393820 TACCGTGGTTGGTTCAGACC 59.606 55.000 0.00 0.00 46.71 3.85
3558 3892 2.140717 CTTACCGTGGTTGGTTCAGAC 58.859 52.381 0.00 0.00 43.56 3.51
3559 3893 2.040939 TCTTACCGTGGTTGGTTCAGA 58.959 47.619 0.00 0.00 43.56 3.27
3560 3894 2.536761 TCTTACCGTGGTTGGTTCAG 57.463 50.000 0.00 0.00 43.56 3.02
3561 3895 3.278668 TTTCTTACCGTGGTTGGTTCA 57.721 42.857 0.00 0.00 43.56 3.18
3562 3896 3.878699 TCTTTTCTTACCGTGGTTGGTTC 59.121 43.478 0.00 0.00 43.56 3.62
3563 3897 3.888583 TCTTTTCTTACCGTGGTTGGTT 58.111 40.909 0.00 0.00 43.56 3.67
3612 3970 3.490348 CATGTTCCCAAGTCAAACCTCT 58.510 45.455 0.00 0.00 0.00 3.69
3636 3994 2.626266 TGAGTGTTTAGTCGGCTCTCAA 59.374 45.455 0.00 0.00 32.22 3.02
3642 4000 2.030946 GCATCATGAGTGTTTAGTCGGC 59.969 50.000 0.09 0.00 0.00 5.54
3737 4095 3.588955 TCATGCATACACACTCACTGAC 58.411 45.455 0.00 0.00 0.00 3.51
3744 4102 1.134280 GCCCTCTCATGCATACACACT 60.134 52.381 0.00 0.00 0.00 3.55
3754 4114 7.227156 AGGTAAACTATTTATGCCCTCTCATG 58.773 38.462 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.