Multiple sequence alignment - TraesCS1B01G083300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G083300 chr1B 100.000 3541 0 0 1 3541 67410616 67414156 0.000000e+00 6540.0
1 TraesCS1B01G083300 chr1B 96.629 89 3 0 2763 2851 50399862 50399774 7.920000e-32 148.0
2 TraesCS1B01G083300 chr1D 94.156 2738 105 25 69 2773 47648611 47651326 0.000000e+00 4119.0
3 TraesCS1B01G083300 chr1D 88.385 353 27 4 126 464 47593594 47593946 2.540000e-111 412.0
4 TraesCS1B01G083300 chr1D 93.488 215 10 2 2982 3194 47651577 47651789 2.050000e-82 316.0
5 TraesCS1B01G083300 chr1D 94.697 132 5 1 2852 2983 47651325 47651454 1.670000e-48 204.0
6 TraesCS1B01G083300 chr1D 88.235 119 5 7 14 130 47581362 47581473 2.220000e-27 134.0
7 TraesCS1B01G083300 chr1A 91.406 1280 60 25 5 1257 47516577 47517833 0.000000e+00 1709.0
8 TraesCS1B01G083300 chr1A 94.432 916 33 8 1875 2773 47519610 47520524 0.000000e+00 1393.0
9 TraesCS1B01G083300 chr1A 97.302 630 17 0 1249 1878 47518879 47519508 0.000000e+00 1070.0
10 TraesCS1B01G083300 chr1A 86.261 444 28 8 2852 3287 47520523 47520941 5.390000e-123 451.0
11 TraesCS1B01G083300 chr1A 85.520 221 24 7 3327 3541 47520937 47521155 1.280000e-54 224.0
12 TraesCS1B01G083300 chr6B 77.477 1292 236 44 521 1775 123911118 123912391 0.000000e+00 723.0
13 TraesCS1B01G083300 chr6B 81.034 174 29 2 597 768 10852875 10852704 6.170000e-28 135.0
14 TraesCS1B01G083300 chr6B 84.906 106 14 2 2321 2425 9664390 9664494 4.830000e-19 106.0
15 TraesCS1B01G083300 chr6B 75.758 198 36 10 1564 1755 19198251 19198442 4.870000e-14 89.8
16 TraesCS1B01G083300 chr6D 77.013 1279 247 37 521 1775 47638451 47637196 0.000000e+00 689.0
17 TraesCS1B01G083300 chr6D 92.079 101 5 3 2771 2869 402030647 402030548 4.770000e-29 139.0
18 TraesCS1B01G083300 chr6D 89.091 110 7 5 2769 2877 379808965 379809070 7.980000e-27 132.0
19 TraesCS1B01G083300 chr6A 74.368 554 100 23 1229 1775 5072554 5073072 7.750000e-47 198.0
20 TraesCS1B01G083300 chr5D 78.710 310 38 16 1780 2078 527572673 527572381 7.810000e-42 182.0
21 TraesCS1B01G083300 chr5D 78.710 310 38 16 1780 2078 527602236 527601944 7.810000e-42 182.0
22 TraesCS1B01G083300 chr5D 77.778 279 49 11 591 865 441239158 441238889 3.660000e-35 159.0
23 TraesCS1B01G083300 chr2A 95.745 94 3 1 2759 2851 622029687 622029594 2.200000e-32 150.0
24 TraesCS1B01G083300 chr4B 93.069 101 5 2 2761 2859 58761313 58761413 2.850000e-31 147.0
25 TraesCS1B01G083300 chr3B 93.750 96 3 3 2770 2863 118790444 118790350 1.330000e-29 141.0
26 TraesCS1B01G083300 chr2B 93.684 95 4 2 2757 2851 496962082 496962174 1.330000e-29 141.0
27 TraesCS1B01G083300 chr4A 89.720 107 9 2 2746 2851 82262642 82262747 6.170000e-28 135.0
28 TraesCS1B01G083300 chr4A 88.393 112 9 4 2740 2851 296623870 296623763 7.980000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G083300 chr1B 67410616 67414156 3540 False 6540.000000 6540 100.000000 1 3541 1 chr1B.!!$F1 3540
1 TraesCS1B01G083300 chr1D 47648611 47651789 3178 False 1546.333333 4119 94.113667 69 3194 3 chr1D.!!$F3 3125
2 TraesCS1B01G083300 chr1A 47516577 47521155 4578 False 969.400000 1709 90.984200 5 3541 5 chr1A.!!$F1 3536
3 TraesCS1B01G083300 chr6B 123911118 123912391 1273 False 723.000000 723 77.477000 521 1775 1 chr6B.!!$F3 1254
4 TraesCS1B01G083300 chr6D 47637196 47638451 1255 True 689.000000 689 77.013000 521 1775 1 chr6D.!!$R1 1254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 878 0.323629 TTCGTCCCGATTTTGCCTCT 59.676 50.0 0.0 0.0 35.23 3.69 F
1038 1086 0.832135 TCCCAAGCGTCCAGAACTCT 60.832 55.0 0.0 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2531 3760 0.547471 TCCTCCTCCTTCACATGCCA 60.547 55.0 0.0 0.0 0.00 4.92 R
2600 3832 0.700564 AAGGAAATGCAGCTCCCTGA 59.299 50.0 12.2 0.0 41.77 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.884037 AACTTCTTCACACATTCCCCT 57.116 42.857 0.00 0.00 0.00 4.79
35 36 4.993705 AACTTCTTCACACATTCCCCTA 57.006 40.909 0.00 0.00 0.00 3.53
166 168 0.524862 GGCAACCGACGACTCTTCTA 59.475 55.000 0.00 0.00 0.00 2.10
221 230 3.451178 CCTTCCTCGTCTCTCCCAATTTA 59.549 47.826 0.00 0.00 0.00 1.40
234 243 8.605947 TCTCTCCCAATTTATTTTCTCTTCTCA 58.394 33.333 0.00 0.00 0.00 3.27
235 244 9.236006 CTCTCCCAATTTATTTTCTCTTCTCAA 57.764 33.333 0.00 0.00 0.00 3.02
236 245 9.759473 TCTCCCAATTTATTTTCTCTTCTCAAT 57.241 29.630 0.00 0.00 0.00 2.57
376 397 3.068448 CACATCCAGTCTCTCCATCTCTG 59.932 52.174 0.00 0.00 0.00 3.35
430 451 7.860872 CAGTCTGTTTGTTTGTTTATCCCTTAC 59.139 37.037 0.00 0.00 0.00 2.34
431 452 7.778382 AGTCTGTTTGTTTGTTTATCCCTTACT 59.222 33.333 0.00 0.00 0.00 2.24
432 453 8.410912 GTCTGTTTGTTTGTTTATCCCTTACTT 58.589 33.333 0.00 0.00 0.00 2.24
433 454 9.629878 TCTGTTTGTTTGTTTATCCCTTACTTA 57.370 29.630 0.00 0.00 0.00 2.24
467 488 2.796304 CTGTGTGTTGCAACGACATTT 58.204 42.857 25.86 0.00 0.00 2.32
518 544 1.034838 TGCTTGTCACTGCCGGTTTT 61.035 50.000 1.90 0.00 0.00 2.43
790 831 0.533755 GCCATGTCCCCGAAGATGAG 60.534 60.000 0.00 0.00 0.00 2.90
833 878 0.323629 TTCGTCCCGATTTTGCCTCT 59.676 50.000 0.00 0.00 35.23 3.69
1038 1086 0.832135 TCCCAAGCGTCCAGAACTCT 60.832 55.000 0.00 0.00 0.00 3.24
1201 1249 4.707105 CATGCATACCTCATCTACCACAA 58.293 43.478 0.00 0.00 0.00 3.33
1216 1264 2.982488 ACCACAAAGATCCCTCTTCTGT 59.018 45.455 0.00 0.00 40.93 3.41
1234 1282 1.546476 TGTTGTTGCCACGGAAAGTTT 59.454 42.857 0.00 0.00 0.00 2.66
1471 2573 1.383456 GCACAACTGGTTGCTGGTCA 61.383 55.000 12.65 0.00 44.03 4.02
1529 2631 3.056250 AGGATGCTAGATCATACGCTTGG 60.056 47.826 0.00 0.00 32.55 3.61
1563 2665 7.288810 TGTTGATTTTCACTTCTTAAGCCAT 57.711 32.000 0.00 0.00 0.00 4.40
1663 2768 2.173758 TAAAGTGCATGGGACGCCGA 62.174 55.000 0.00 0.00 0.00 5.54
1674 2779 1.226746 GGACGCCGATAAAGAATGGG 58.773 55.000 0.00 0.00 36.56 4.00
1777 2882 6.424812 TGCTATTTGGACTTCATATGATCACG 59.575 38.462 6.17 0.00 0.00 4.35
1798 2903 9.947669 ATCACGATACTAGTTAAGTGACATTAC 57.052 33.333 21.21 0.00 40.70 1.89
1921 3131 3.243941 ACGTGTGTAGCCTTGTTATCACA 60.244 43.478 0.00 0.00 34.23 3.58
1930 3140 3.119495 GCCTTGTTATCACATTGACCACC 60.119 47.826 0.00 0.00 31.06 4.61
1987 3197 9.927668 ACCAATCAATCCTGTAATTTTAGTTTG 57.072 29.630 0.00 0.00 0.00 2.93
2039 3249 5.599999 ACTGCCTACCTTTATACTGTGAG 57.400 43.478 0.00 0.00 0.00 3.51
2088 3302 5.466728 TGCTGAACTTATGTGACTGTCTTTC 59.533 40.000 9.51 0.91 0.00 2.62
2260 3484 1.075374 TGGCCATTCCAAGCTAACAGT 59.925 47.619 0.00 0.00 43.21 3.55
2331 3555 8.941977 AGGTTTTTGTTTTACTGAAATGGAAAC 58.058 29.630 0.00 0.00 31.46 2.78
2393 3617 9.855021 TTGGCTATAGCTTTTGATAAAGAAAAC 57.145 29.630 23.53 2.10 42.78 2.43
2543 3772 1.108776 CCAGGAATGGCATGTGAAGG 58.891 55.000 0.00 0.00 0.00 3.46
2553 3785 2.038295 GGCATGTGAAGGAGGAGGATAG 59.962 54.545 0.00 0.00 0.00 2.08
2596 3828 2.346803 CTACAATGGTGTCGTCAAGGG 58.653 52.381 0.00 0.00 39.30 3.95
2600 3832 1.573108 ATGGTGTCGTCAAGGGAGAT 58.427 50.000 0.00 0.00 0.00 2.75
2699 3931 1.268352 GCTCGAGCAGGTACTCCTATG 59.732 57.143 31.91 0.00 43.07 2.23
2773 4005 5.671493 ACTCCCTGTATGCATGTTTACTAC 58.329 41.667 10.16 0.00 0.00 2.73
2774 4006 5.425539 ACTCCCTGTATGCATGTTTACTACT 59.574 40.000 10.16 0.00 0.00 2.57
2775 4007 5.914033 TCCCTGTATGCATGTTTACTACTC 58.086 41.667 10.16 0.00 0.00 2.59
2776 4008 5.057149 CCCTGTATGCATGTTTACTACTCC 58.943 45.833 10.16 0.00 0.00 3.85
2777 4009 5.057149 CCTGTATGCATGTTTACTACTCCC 58.943 45.833 10.16 0.00 0.00 4.30
2778 4010 5.163301 CCTGTATGCATGTTTACTACTCCCT 60.163 44.000 10.16 0.00 0.00 4.20
2779 4011 5.914033 TGTATGCATGTTTACTACTCCCTC 58.086 41.667 10.16 0.00 0.00 4.30
2780 4012 3.906720 TGCATGTTTACTACTCCCTCC 57.093 47.619 0.00 0.00 0.00 4.30
2781 4013 2.167693 TGCATGTTTACTACTCCCTCCG 59.832 50.000 0.00 0.00 0.00 4.63
2782 4014 2.167900 GCATGTTTACTACTCCCTCCGT 59.832 50.000 0.00 0.00 0.00 4.69
2783 4015 3.369157 GCATGTTTACTACTCCCTCCGTT 60.369 47.826 0.00 0.00 0.00 4.44
2784 4016 4.430908 CATGTTTACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
2785 4017 2.827921 TGTTTACTACTCCCTCCGTTCC 59.172 50.000 0.00 0.00 0.00 3.62
2786 4018 2.827921 GTTTACTACTCCCTCCGTTCCA 59.172 50.000 0.00 0.00 0.00 3.53
2787 4019 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
2788 4020 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2789 4021 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2790 4022 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2791 4023 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2792 4024 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2793 4025 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2794 4026 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2795 4027 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2796 4028 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2797 4029 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2798 4030 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2799 4031 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2800 4032 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2801 4033 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2802 4034 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2803 4035 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2804 4036 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2805 4037 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2806 4038 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2807 4039 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2808 4040 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2809 4041 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2810 4042 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
2843 4075 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2844 4076 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
2845 4077 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2846 4078 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2847 4079 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2848 4080 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2849 4081 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2850 4082 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2852 4084 5.395990 GGGTCATCTATTTTGGAACGGAGTA 60.396 44.000 0.00 0.00 45.00 2.59
2936 4168 4.771577 TGTCAATGTGGTATTTGCAGGAAT 59.228 37.500 0.00 0.00 0.00 3.01
2965 4198 6.619744 AGTAGCTTACTAGTCGGAGTTTTTC 58.380 40.000 0.00 0.00 37.23 2.29
3150 4509 7.119709 TCAATCGAGATGGTTATCTGGTTTA 57.880 36.000 0.00 0.00 43.63 2.01
3154 4513 6.338146 TCGAGATGGTTATCTGGTTTAGTTG 58.662 40.000 0.00 0.00 43.63 3.16
3170 4529 2.186160 TTGTGTTCTGCCCAGCACG 61.186 57.895 0.00 0.00 33.79 5.34
3204 4563 0.950116 GATCAGTGCCTGGCTATTGC 59.050 55.000 21.03 5.08 38.76 3.56
3210 4569 2.484062 GCCTGGCTATTGCGCATGT 61.484 57.895 12.75 5.90 40.82 3.21
3211 4570 1.650912 CCTGGCTATTGCGCATGTC 59.349 57.895 12.75 7.11 40.82 3.06
3238 4600 0.250467 TCTTTCAGAGGCTGGTGTGC 60.250 55.000 0.00 0.00 31.51 4.57
3249 4611 1.407258 GCTGGTGTGCCTTGTTGTTTA 59.593 47.619 0.00 0.00 35.27 2.01
3250 4612 2.035832 GCTGGTGTGCCTTGTTGTTTAT 59.964 45.455 0.00 0.00 35.27 1.40
3252 4614 4.261825 GCTGGTGTGCCTTGTTGTTTATTA 60.262 41.667 0.00 0.00 35.27 0.98
3253 4615 5.189659 TGGTGTGCCTTGTTGTTTATTAC 57.810 39.130 0.00 0.00 35.27 1.89
3254 4616 4.890581 TGGTGTGCCTTGTTGTTTATTACT 59.109 37.500 0.00 0.00 35.27 2.24
3255 4617 5.361285 TGGTGTGCCTTGTTGTTTATTACTT 59.639 36.000 0.00 0.00 35.27 2.24
3258 4620 8.085909 GGTGTGCCTTGTTGTTTATTACTTAAT 58.914 33.333 0.00 0.00 0.00 1.40
3287 4650 4.673968 TCTTCCTGGATGTGTACAGTACT 58.326 43.478 12.07 0.00 34.21 2.73
3288 4651 4.705507 TCTTCCTGGATGTGTACAGTACTC 59.294 45.833 12.07 8.87 34.21 2.59
3289 4652 3.362706 TCCTGGATGTGTACAGTACTCC 58.637 50.000 12.07 10.70 34.21 3.85
3290 4653 2.431057 CCTGGATGTGTACAGTACTCCC 59.569 54.545 12.07 6.68 34.21 4.30
3291 4654 3.366396 CTGGATGTGTACAGTACTCCCT 58.634 50.000 12.07 0.00 31.18 4.20
3292 4655 3.362706 TGGATGTGTACAGTACTCCCTC 58.637 50.000 12.07 7.77 0.00 4.30
3293 4656 3.245479 TGGATGTGTACAGTACTCCCTCA 60.245 47.826 12.07 4.22 0.00 3.86
3294 4657 3.961408 GGATGTGTACAGTACTCCCTCAT 59.039 47.826 12.07 8.38 0.00 2.90
3295 4658 4.038162 GGATGTGTACAGTACTCCCTCATC 59.962 50.000 12.07 14.65 0.00 2.92
3296 4659 4.042271 TGTGTACAGTACTCCCTCATCA 57.958 45.455 12.07 0.00 0.00 3.07
3297 4660 4.610333 TGTGTACAGTACTCCCTCATCAT 58.390 43.478 12.07 0.00 0.00 2.45
3298 4661 5.762279 TGTGTACAGTACTCCCTCATCATA 58.238 41.667 12.07 0.00 0.00 2.15
3299 4662 6.192044 TGTGTACAGTACTCCCTCATCATAA 58.808 40.000 12.07 0.00 0.00 1.90
3300 4663 6.839134 TGTGTACAGTACTCCCTCATCATAAT 59.161 38.462 12.07 0.00 0.00 1.28
3301 4664 7.148641 GTGTACAGTACTCCCTCATCATAATG 58.851 42.308 12.07 0.00 0.00 1.90
3302 4665 6.839134 TGTACAGTACTCCCTCATCATAATGT 59.161 38.462 12.07 0.00 34.32 2.71
3303 4666 8.002459 TGTACAGTACTCCCTCATCATAATGTA 58.998 37.037 12.07 0.00 34.32 2.29
3304 4667 7.914427 ACAGTACTCCCTCATCATAATGTAA 57.086 36.000 0.00 0.00 34.32 2.41
3305 4668 7.957002 ACAGTACTCCCTCATCATAATGTAAG 58.043 38.462 0.00 0.00 34.32 2.34
3306 4669 7.785028 ACAGTACTCCCTCATCATAATGTAAGA 59.215 37.037 0.00 0.00 34.32 2.10
3307 4670 8.085296 CAGTACTCCCTCATCATAATGTAAGAC 58.915 40.741 0.00 0.00 34.32 3.01
3308 4671 6.090483 ACTCCCTCATCATAATGTAAGACG 57.910 41.667 0.00 0.00 34.32 4.18
3309 4672 5.598830 ACTCCCTCATCATAATGTAAGACGT 59.401 40.000 0.00 0.00 34.32 4.34
3310 4673 6.098409 ACTCCCTCATCATAATGTAAGACGTT 59.902 38.462 0.00 0.00 34.32 3.99
3311 4674 6.884832 TCCCTCATCATAATGTAAGACGTTT 58.115 36.000 0.00 0.00 34.32 3.60
3312 4675 7.335627 TCCCTCATCATAATGTAAGACGTTTT 58.664 34.615 0.00 0.00 34.32 2.43
3313 4676 7.827236 TCCCTCATCATAATGTAAGACGTTTTT 59.173 33.333 0.00 0.00 34.32 1.94
3332 4695 4.920781 TTTTAGGAGGGAGGGAGTATCT 57.079 45.455 0.00 0.00 33.73 1.98
3333 4696 4.920781 TTTAGGAGGGAGGGAGTATCTT 57.079 45.455 0.00 0.00 33.73 2.40
3334 4697 4.920781 TTAGGAGGGAGGGAGTATCTTT 57.079 45.455 0.00 0.00 33.73 2.52
3335 4698 3.338110 AGGAGGGAGGGAGTATCTTTC 57.662 52.381 0.00 0.00 33.73 2.62
3336 4699 2.592512 AGGAGGGAGGGAGTATCTTTCA 59.407 50.000 0.00 0.00 33.73 2.69
3337 4700 2.969262 GGAGGGAGGGAGTATCTTTCAG 59.031 54.545 0.00 0.00 33.73 3.02
3338 4701 3.374318 GGAGGGAGGGAGTATCTTTCAGA 60.374 52.174 0.00 0.00 33.73 3.27
3339 4702 3.895041 GAGGGAGGGAGTATCTTTCAGAG 59.105 52.174 0.00 0.00 33.73 3.35
3340 4703 3.533907 AGGGAGGGAGTATCTTTCAGAGA 59.466 47.826 0.00 0.00 39.13 3.10
3341 4704 3.895041 GGGAGGGAGTATCTTTCAGAGAG 59.105 52.174 0.00 0.00 37.93 3.20
3342 4705 3.320826 GGAGGGAGTATCTTTCAGAGAGC 59.679 52.174 0.00 0.00 37.93 4.09
3343 4706 2.955660 AGGGAGTATCTTTCAGAGAGCG 59.044 50.000 0.00 0.00 37.93 5.03
3370 4733 8.738645 AGATAGCTTGAACCTTGGTTAAATAG 57.261 34.615 4.88 2.51 0.00 1.73
3384 4747 9.678941 CTTGGTTAAATAGGAGTTCTGAAAAAC 57.321 33.333 0.00 0.00 0.00 2.43
3447 4812 8.882557 ACATCCATAATGTATCCAATAATGCA 57.117 30.769 0.00 0.00 46.95 3.96
3448 4813 8.742777 ACATCCATAATGTATCCAATAATGCAC 58.257 33.333 0.00 0.00 46.95 4.57
3450 4815 8.339344 TCCATAATGTATCCAATAATGCACAG 57.661 34.615 0.00 0.00 0.00 3.66
3451 4816 7.031372 CCATAATGTATCCAATAATGCACAGC 58.969 38.462 0.00 0.00 0.00 4.40
3457 4826 1.066605 CCAATAATGCACAGCAGCCTC 59.933 52.381 0.00 0.00 43.65 4.70
3470 4839 1.203994 GCAGCCTCGTTAACTGTAGGA 59.796 52.381 17.84 2.27 33.87 2.94
3478 4847 0.103572 TTAACTGTAGGATCGCCGCC 59.896 55.000 0.00 0.00 39.96 6.13
3515 4884 4.385447 CGTTGGTTATTCTGCCATTGTTTG 59.615 41.667 0.00 0.00 34.37 2.93
3524 4893 6.839124 TTCTGCCATTGTTTGTTGATATCT 57.161 33.333 3.98 0.00 0.00 1.98
3536 4905 7.336679 TGTTTGTTGATATCTTGATGGTACCAG 59.663 37.037 21.41 6.64 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.962362 AGGGGAATGTGTGAAGAAGTTTTT 59.038 37.500 0.00 0.00 0.00 1.94
12 13 4.546674 AGGGGAATGTGTGAAGAAGTTTT 58.453 39.130 0.00 0.00 0.00 2.43
44 45 2.512515 GAGCCGAGCAAGCCGAAT 60.513 61.111 4.84 0.00 0.00 3.34
166 168 0.566176 TCAATAGATCGGGAGGGGGT 59.434 55.000 0.00 0.00 0.00 4.95
221 230 8.753133 GGGTTTAATCCATTGAGAAGAGAAAAT 58.247 33.333 4.97 0.00 0.00 1.82
234 243 5.913946 AGCTAGCTAGGGTTTAATCCATT 57.086 39.130 17.69 0.00 0.00 3.16
235 244 7.072581 AGTTTAGCTAGCTAGGGTTTAATCCAT 59.927 37.037 23.03 0.00 0.00 3.41
236 245 6.386050 AGTTTAGCTAGCTAGGGTTTAATCCA 59.614 38.462 23.03 2.57 0.00 3.41
341 362 3.846588 ACTGGATGTGGATTGTCTTACCT 59.153 43.478 0.00 0.00 0.00 3.08
376 397 2.524306 TGAAATGTGGGGATGGTCAAC 58.476 47.619 0.00 0.00 0.00 3.18
430 451 9.874215 CAACACACAGCATCTATCAATAATAAG 57.126 33.333 0.00 0.00 0.00 1.73
431 452 8.344831 GCAACACACAGCATCTATCAATAATAA 58.655 33.333 0.00 0.00 0.00 1.40
432 453 7.498570 TGCAACACACAGCATCTATCAATAATA 59.501 33.333 0.00 0.00 35.51 0.98
433 454 6.319405 TGCAACACACAGCATCTATCAATAAT 59.681 34.615 0.00 0.00 35.51 1.28
442 463 0.308684 CGTTGCAACACACAGCATCT 59.691 50.000 28.01 0.00 40.94 2.90
467 488 5.709631 TGCAATGGAGCAATTTCTTACTACA 59.290 36.000 0.00 0.00 42.46 2.74
518 544 2.986019 TCTTCTTTGAATGGACCCTGGA 59.014 45.455 0.00 0.00 0.00 3.86
1038 1086 7.038587 AGGATTGTACTGAACATGTGGTAACTA 60.039 37.037 0.00 0.00 38.10 2.24
1090 1138 3.259876 ACCAACATGTACACGTAGGACAT 59.740 43.478 0.00 9.27 34.11 3.06
1201 1249 3.416156 GCAACAACAGAAGAGGGATCTT 58.584 45.455 0.00 0.00 0.00 2.40
1216 1264 6.886034 AAGCAAAACTTTCCGTGGCAACAA 62.886 41.667 0.00 0.00 43.06 2.83
1296 2398 2.165998 GAGAAACTTGAGGCTGGCAAT 58.834 47.619 3.38 0.00 0.00 3.56
1471 2573 5.048083 ACATCTGACGCAAACAAATGGTATT 60.048 36.000 0.00 0.00 0.00 1.89
1529 2631 4.952335 AGTGAAAATCAACATCCTCATCCC 59.048 41.667 0.00 0.00 0.00 3.85
1563 2665 1.595311 ACTCAGCATTATCCCCCACA 58.405 50.000 0.00 0.00 0.00 4.17
1674 2779 2.429610 AGGATGGACAGCAATGAAATGC 59.570 45.455 0.00 0.00 46.78 3.56
1798 2903 6.630444 AGACATCTTAAGGCAAGCATTATG 57.370 37.500 1.85 3.39 33.94 1.90
1921 3131 4.000988 GACAATGAAGTACGGTGGTCAAT 58.999 43.478 0.00 0.00 0.00 2.57
1987 3197 8.460831 AATTACACAACGATTAAAGAAATGGC 57.539 30.769 0.00 0.00 0.00 4.40
2039 3249 3.003480 ACAAATCTCGTAAGCTTGAGGC 58.997 45.455 9.86 0.00 42.19 4.70
2088 3302 9.847706 CTAACATACTAGTGCATAAGTATCAGG 57.152 37.037 16.74 11.00 36.91 3.86
2159 3373 6.154192 TGCCATGTAAAATGTACAATCCATGT 59.846 34.615 0.00 0.00 46.36 3.21
2160 3374 6.571605 TGCCATGTAAAATGTACAATCCATG 58.428 36.000 0.00 8.26 0.00 3.66
2161 3375 6.183360 CCTGCCATGTAAAATGTACAATCCAT 60.183 38.462 0.00 0.00 0.00 3.41
2222 3445 1.545582 CCACTTGTATTGCAACAGGGG 59.454 52.381 0.00 2.17 31.14 4.79
2223 3446 1.067635 GCCACTTGTATTGCAACAGGG 60.068 52.381 0.00 1.59 31.14 4.45
2260 3484 3.027412 ACACACAAGCACAAATTACCCA 58.973 40.909 0.00 0.00 0.00 4.51
2331 3555 5.589855 TGTCCTTATATTGCAGACCAACATG 59.410 40.000 0.00 0.00 35.99 3.21
2393 3617 2.359900 GACTTGGTCCAGCAACATAGG 58.640 52.381 0.00 0.00 0.00 2.57
2470 3699 8.121305 AGAGTAGAGGTAATTCAGCATCATAG 57.879 38.462 0.00 0.00 0.00 2.23
2531 3760 0.547471 TCCTCCTCCTTCACATGCCA 60.547 55.000 0.00 0.00 0.00 4.92
2533 3762 2.549778 GCTATCCTCCTCCTTCACATGC 60.550 54.545 0.00 0.00 0.00 4.06
2553 3785 1.203287 GACCATCCAAAAGCTTCCTGC 59.797 52.381 0.00 0.00 43.29 4.85
2596 3828 2.220313 GAAATGCAGCTCCCTGATCTC 58.780 52.381 0.00 0.00 41.77 2.75
2600 3832 0.700564 AAGGAAATGCAGCTCCCTGA 59.299 50.000 12.20 0.00 41.77 3.86
2699 3931 4.455877 GCAAATAGTCATGGTACCATAGGC 59.544 45.833 26.91 20.83 34.91 3.93
2773 4005 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2774 4006 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2775 4007 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2776 4008 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2777 4009 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2778 4010 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2779 4011 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2780 4012 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2781 4013 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2782 4014 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2783 4015 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
2784 4016 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2817 4049 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
2818 4050 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2819 4051 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2820 4052 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2821 4053 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2822 4054 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2823 4055 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2824 4056 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2825 4057 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2826 4058 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2827 4059 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2828 4060 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2829 4061 4.514401 ACTCCGTTCCAAAATAGATGACC 58.486 43.478 0.00 0.00 0.00 4.02
2830 4062 6.338937 ACTACTCCGTTCCAAAATAGATGAC 58.661 40.000 0.00 0.00 0.00 3.06
2831 4063 6.540438 ACTACTCCGTTCCAAAATAGATGA 57.460 37.500 0.00 0.00 0.00 2.92
2832 4064 8.765219 CATAACTACTCCGTTCCAAAATAGATG 58.235 37.037 0.00 0.00 0.00 2.90
2833 4065 7.441458 GCATAACTACTCCGTTCCAAAATAGAT 59.559 37.037 0.00 0.00 0.00 1.98
2834 4066 6.759827 GCATAACTACTCCGTTCCAAAATAGA 59.240 38.462 0.00 0.00 0.00 1.98
2835 4067 6.761714 AGCATAACTACTCCGTTCCAAAATAG 59.238 38.462 0.00 0.00 0.00 1.73
2836 4068 6.537301 CAGCATAACTACTCCGTTCCAAAATA 59.463 38.462 0.00 0.00 0.00 1.40
2837 4069 5.354234 CAGCATAACTACTCCGTTCCAAAAT 59.646 40.000 0.00 0.00 0.00 1.82
2838 4070 4.693566 CAGCATAACTACTCCGTTCCAAAA 59.306 41.667 0.00 0.00 0.00 2.44
2839 4071 4.020928 TCAGCATAACTACTCCGTTCCAAA 60.021 41.667 0.00 0.00 0.00 3.28
2840 4072 3.512329 TCAGCATAACTACTCCGTTCCAA 59.488 43.478 0.00 0.00 0.00 3.53
2841 4073 3.093814 TCAGCATAACTACTCCGTTCCA 58.906 45.455 0.00 0.00 0.00 3.53
2842 4074 3.130693 AGTCAGCATAACTACTCCGTTCC 59.869 47.826 0.00 0.00 0.00 3.62
2843 4075 4.106197 CAGTCAGCATAACTACTCCGTTC 58.894 47.826 0.00 0.00 0.00 3.95
2844 4076 3.762288 TCAGTCAGCATAACTACTCCGTT 59.238 43.478 0.00 0.00 0.00 4.44
2845 4077 3.353557 TCAGTCAGCATAACTACTCCGT 58.646 45.455 0.00 0.00 0.00 4.69
2846 4078 4.541779 GATCAGTCAGCATAACTACTCCG 58.458 47.826 0.00 0.00 0.00 4.63
2847 4079 4.342378 TGGATCAGTCAGCATAACTACTCC 59.658 45.833 0.00 0.00 31.70 3.85
2848 4080 5.068460 AGTGGATCAGTCAGCATAACTACTC 59.932 44.000 0.00 0.00 0.00 2.59
2849 4081 4.959210 AGTGGATCAGTCAGCATAACTACT 59.041 41.667 0.00 0.00 0.00 2.57
2850 4082 5.269505 AGTGGATCAGTCAGCATAACTAC 57.730 43.478 0.00 0.00 0.00 2.73
2851 4083 5.664457 CAAGTGGATCAGTCAGCATAACTA 58.336 41.667 0.00 0.00 0.00 2.24
2852 4084 4.511527 CAAGTGGATCAGTCAGCATAACT 58.488 43.478 0.00 0.00 0.00 2.24
2936 4168 5.089970 TCCGACTAGTAAGCTACTACACA 57.910 43.478 0.00 0.00 40.14 3.72
3150 4509 1.103398 GTGCTGGGCAGAACACAACT 61.103 55.000 0.00 0.00 40.08 3.16
3154 4513 2.280797 TCGTGCTGGGCAGAACAC 60.281 61.111 0.00 0.00 40.08 3.32
3170 4529 4.194720 ATCCAGCGCTCGTCCGTC 62.195 66.667 7.13 0.00 0.00 4.79
3194 4553 1.869774 TAGACATGCGCAATAGCCAG 58.130 50.000 17.11 0.83 37.52 4.85
3204 4563 5.052481 TCTGAAAGATTGGATAGACATGCG 58.948 41.667 0.00 0.00 38.67 4.73
3210 4569 4.102210 CCAGCCTCTGAAAGATTGGATAGA 59.898 45.833 0.00 0.00 45.62 1.98
3211 4570 4.141528 ACCAGCCTCTGAAAGATTGGATAG 60.142 45.833 8.65 0.00 45.62 2.08
3258 4620 8.768397 ACTGTACACATCCAGGAAGATATTTTA 58.232 33.333 0.00 0.00 32.90 1.52
3259 4621 7.633789 ACTGTACACATCCAGGAAGATATTTT 58.366 34.615 0.00 0.00 32.90 1.82
3261 4623 6.814954 ACTGTACACATCCAGGAAGATATT 57.185 37.500 0.00 0.00 32.90 1.28
3262 4624 7.069986 AGTACTGTACACATCCAGGAAGATAT 58.930 38.462 19.27 0.00 32.90 1.63
3273 4636 4.645136 TGATGAGGGAGTACTGTACACATC 59.355 45.833 19.27 20.23 34.28 3.06
3276 4639 6.710597 TTATGATGAGGGAGTACTGTACAC 57.289 41.667 19.27 13.07 0.00 2.90
3287 4650 6.479972 AACGTCTTACATTATGATGAGGGA 57.520 37.500 4.20 0.00 36.73 4.20
3288 4651 7.553881 AAAACGTCTTACATTATGATGAGGG 57.446 36.000 4.20 0.00 36.73 4.30
3310 4673 5.236425 AGATACTCCCTCCCTCCTAAAAA 57.764 43.478 0.00 0.00 0.00 1.94
3311 4674 4.920781 AGATACTCCCTCCCTCCTAAAA 57.079 45.455 0.00 0.00 0.00 1.52
3312 4675 4.920781 AAGATACTCCCTCCCTCCTAAA 57.079 45.455 0.00 0.00 0.00 1.85
3313 4676 4.234458 TGAAAGATACTCCCTCCCTCCTAA 59.766 45.833 0.00 0.00 0.00 2.69
3314 4677 3.797845 TGAAAGATACTCCCTCCCTCCTA 59.202 47.826 0.00 0.00 0.00 2.94
3315 4678 2.592512 TGAAAGATACTCCCTCCCTCCT 59.407 50.000 0.00 0.00 0.00 3.69
3316 4679 2.969262 CTGAAAGATACTCCCTCCCTCC 59.031 54.545 0.00 0.00 34.07 4.30
3317 4680 3.895041 CTCTGAAAGATACTCCCTCCCTC 59.105 52.174 0.00 0.00 45.62 4.30
3318 4681 3.533907 TCTCTGAAAGATACTCCCTCCCT 59.466 47.826 0.00 0.00 45.62 4.20
3319 4682 3.895041 CTCTCTGAAAGATACTCCCTCCC 59.105 52.174 0.00 0.00 45.62 4.30
3320 4683 3.320826 GCTCTCTGAAAGATACTCCCTCC 59.679 52.174 0.00 0.00 45.62 4.30
3321 4684 3.004315 CGCTCTCTGAAAGATACTCCCTC 59.996 52.174 0.00 0.00 45.62 4.30
3322 4685 2.955660 CGCTCTCTGAAAGATACTCCCT 59.044 50.000 0.00 0.00 45.62 4.20
3323 4686 2.035321 CCGCTCTCTGAAAGATACTCCC 59.965 54.545 0.00 0.00 45.62 4.30
3324 4687 2.952978 TCCGCTCTCTGAAAGATACTCC 59.047 50.000 0.00 0.00 45.62 3.85
3325 4688 3.880490 TCTCCGCTCTCTGAAAGATACTC 59.120 47.826 0.00 0.00 45.62 2.59
3326 4689 3.892284 TCTCCGCTCTCTGAAAGATACT 58.108 45.455 0.00 0.00 45.62 2.12
3327 4690 4.846779 ATCTCCGCTCTCTGAAAGATAC 57.153 45.455 0.00 0.00 45.62 2.24
3328 4691 4.457603 GCTATCTCCGCTCTCTGAAAGATA 59.542 45.833 0.00 0.00 45.62 1.98
3329 4692 3.255642 GCTATCTCCGCTCTCTGAAAGAT 59.744 47.826 0.00 0.00 45.62 2.40
3330 4693 2.621055 GCTATCTCCGCTCTCTGAAAGA 59.379 50.000 0.00 0.00 43.69 2.52
3331 4694 2.622942 AGCTATCTCCGCTCTCTGAAAG 59.377 50.000 0.00 0.00 30.49 2.62
3332 4695 2.660572 AGCTATCTCCGCTCTCTGAAA 58.339 47.619 0.00 0.00 30.49 2.69
3333 4696 2.356665 AGCTATCTCCGCTCTCTGAA 57.643 50.000 0.00 0.00 30.49 3.02
3334 4697 1.952990 CAAGCTATCTCCGCTCTCTGA 59.047 52.381 0.00 0.00 36.56 3.27
3335 4698 1.952990 TCAAGCTATCTCCGCTCTCTG 59.047 52.381 0.00 0.00 36.56 3.35
3336 4699 2.356665 TCAAGCTATCTCCGCTCTCT 57.643 50.000 0.00 0.00 36.56 3.10
3337 4700 2.544903 GGTTCAAGCTATCTCCGCTCTC 60.545 54.545 0.00 0.00 36.56 3.20
3338 4701 1.410882 GGTTCAAGCTATCTCCGCTCT 59.589 52.381 0.00 0.00 36.56 4.09
3339 4702 1.410882 AGGTTCAAGCTATCTCCGCTC 59.589 52.381 0.00 0.00 36.56 5.03
3340 4703 1.490574 AGGTTCAAGCTATCTCCGCT 58.509 50.000 0.00 0.00 39.94 5.52
3341 4704 1.936547 CAAGGTTCAAGCTATCTCCGC 59.063 52.381 0.00 0.00 0.00 5.54
3342 4705 2.093447 ACCAAGGTTCAAGCTATCTCCG 60.093 50.000 0.00 0.00 0.00 4.63
3343 4706 3.636153 ACCAAGGTTCAAGCTATCTCC 57.364 47.619 0.00 0.00 0.00 3.71
3370 4733 5.709966 ACAACACTTGTTTTTCAGAACTCC 58.290 37.500 0.00 0.00 42.22 3.85
3384 4747 6.563422 TGGAGAATCTGAAAAACAACACTTG 58.437 36.000 0.00 0.00 33.73 3.16
3405 4770 3.371917 GGATGTTCCATGGTCTCAATGGA 60.372 47.826 12.58 2.07 42.23 3.41
3434 4799 2.886523 GGCTGCTGTGCATTATTGGATA 59.113 45.455 0.00 0.00 38.13 2.59
3435 4800 1.684983 GGCTGCTGTGCATTATTGGAT 59.315 47.619 0.00 0.00 38.13 3.41
3436 4801 1.105457 GGCTGCTGTGCATTATTGGA 58.895 50.000 0.00 0.00 38.13 3.53
3437 4802 1.066605 GAGGCTGCTGTGCATTATTGG 59.933 52.381 0.00 0.00 38.13 3.16
3438 4803 1.268386 CGAGGCTGCTGTGCATTATTG 60.268 52.381 0.00 0.00 38.13 1.90
3439 4804 1.019673 CGAGGCTGCTGTGCATTATT 58.980 50.000 0.00 0.00 38.13 1.40
3441 4806 0.321564 AACGAGGCTGCTGTGCATTA 60.322 50.000 0.00 0.00 38.13 1.90
3443 4808 0.321564 TTAACGAGGCTGCTGTGCAT 60.322 50.000 0.00 0.00 38.13 3.96
3444 4809 1.070615 TTAACGAGGCTGCTGTGCA 59.929 52.632 0.00 0.00 36.92 4.57
3445 4810 0.951040 AGTTAACGAGGCTGCTGTGC 60.951 55.000 0.00 0.00 0.00 4.57
3446 4811 0.792640 CAGTTAACGAGGCTGCTGTG 59.207 55.000 0.00 0.00 0.00 3.66
3447 4812 0.393077 ACAGTTAACGAGGCTGCTGT 59.607 50.000 0.00 0.00 33.87 4.40
3448 4813 2.263077 CTACAGTTAACGAGGCTGCTG 58.737 52.381 0.00 0.00 33.87 4.41
3450 4815 1.203994 TCCTACAGTTAACGAGGCTGC 59.796 52.381 15.58 0.00 33.87 5.25
3451 4816 3.707793 GATCCTACAGTTAACGAGGCTG 58.292 50.000 15.58 5.15 36.41 4.85
3457 4826 1.474017 CGGCGATCCTACAGTTAACG 58.526 55.000 0.00 0.00 0.00 3.18
3470 4839 0.461339 AAAACTACATCGGCGGCGAT 60.461 50.000 37.39 37.39 0.00 4.58
3493 4862 5.296748 ACAAACAATGGCAGAATAACCAAC 58.703 37.500 0.00 0.00 39.96 3.77
3499 4868 8.523915 AGATATCAACAAACAATGGCAGAATA 57.476 30.769 5.32 0.00 0.00 1.75
3515 4884 5.468072 CAGCTGGTACCATCAAGATATCAAC 59.532 44.000 16.75 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.