Multiple sequence alignment - TraesCS1B01G083100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G083100 chr1B 100.000 8799 0 0 1 8799 67022797 67013999 0.000000e+00 16249.0
1 TraesCS1B01G083100 chr1B 91.525 177 12 3 4946 5120 669710794 669710619 3.170000e-59 241.0
2 TraesCS1B01G083100 chr1B 89.394 66 7 0 8677 8742 112197555 112197620 5.660000e-12 84.2
3 TraesCS1B01G083100 chr1A 96.772 5049 123 15 400 5419 47193682 47188645 0.000000e+00 8384.0
4 TraesCS1B01G083100 chr1A 93.086 1967 100 14 5459 7404 47188644 47186693 0.000000e+00 2846.0
5 TraesCS1B01G083100 chr1A 95.906 977 23 4 7399 8362 47186544 47185572 0.000000e+00 1567.0
6 TraesCS1B01G083100 chr1A 93.643 409 17 1 1 409 47194104 47193705 3.510000e-168 603.0
7 TraesCS1B01G083100 chr1A 95.000 220 3 4 8363 8575 47185335 47185117 1.090000e-88 339.0
8 TraesCS1B01G083100 chr1A 94.211 190 11 0 8564 8753 47185074 47184885 3.110000e-74 291.0
9 TraesCS1B01G083100 chr1D 98.347 3811 56 4 3598 7404 47314379 47310572 0.000000e+00 6682.0
10 TraesCS1B01G083100 chr1D 96.894 3606 77 9 1 3582 47318087 47314493 0.000000e+00 6006.0
11 TraesCS1B01G083100 chr1D 96.003 1176 37 5 7399 8565 47310310 47309136 0.000000e+00 1903.0
12 TraesCS1B01G083100 chr1D 83.155 1027 134 24 3957 4952 46635726 46634708 0.000000e+00 902.0
13 TraesCS1B01G083100 chr1D 75.029 1706 307 81 5680 7314 46634130 46632473 0.000000e+00 680.0
14 TraesCS1B01G083100 chr1D 81.190 840 118 28 457 1272 46639050 46638227 2.680000e-179 640.0
15 TraesCS1B01G083100 chr1D 79.237 891 132 26 1842 2710 46637900 46637041 9.910000e-159 571.0
16 TraesCS1B01G083100 chr1D 85.012 407 58 2 9 414 46640162 46639758 2.290000e-110 411.0
17 TraesCS1B01G083100 chr1D 81.865 193 31 4 3760 3950 46635960 46635770 9.140000e-35 159.0
18 TraesCS1B01G083100 chr1D 94.030 67 4 0 8564 8630 47309088 47309022 1.560000e-17 102.0
19 TraesCS1B01G083100 chr1D 82.114 123 18 3 8677 8798 70582552 70582671 1.560000e-17 102.0
20 TraesCS1B01G083100 chr2B 92.045 176 12 2 4946 5120 382088766 382088940 6.820000e-61 246.0
21 TraesCS1B01G083100 chr2B 85.124 121 17 1 4207 4326 511123673 511123793 1.200000e-23 122.0
22 TraesCS1B01G083100 chr4B 91.765 170 11 3 4954 5120 450466630 450466799 5.310000e-57 233.0
23 TraesCS1B01G083100 chr3B 90.449 178 13 4 4946 5120 532192744 532192568 1.910000e-56 231.0
24 TraesCS1B01G083100 chr2A 90.449 178 12 5 4946 5120 445370410 445370585 6.870000e-56 230.0
25 TraesCS1B01G083100 chr4A 90.751 173 12 4 4949 5120 449115513 449115344 2.470000e-55 228.0
26 TraesCS1B01G083100 chr6D 89.888 178 14 4 4946 5120 44091569 44091393 8.890000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G083100 chr1B 67013999 67022797 8798 True 16249.000000 16249 100.000000 1 8799 1 chr1B.!!$R1 8798
1 TraesCS1B01G083100 chr1A 47184885 47194104 9219 True 2338.333333 8384 94.769667 1 8753 6 chr1A.!!$R1 8752
2 TraesCS1B01G083100 chr1D 47309022 47318087 9065 True 3673.250000 6682 96.318500 1 8630 4 chr1D.!!$R2 8629
3 TraesCS1B01G083100 chr1D 46632473 46640162 7689 True 560.500000 902 80.914667 9 7314 6 chr1D.!!$R1 7305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.106894 GATCGAGAACCCCCACATCC 59.893 60.000 0.00 0.0 0.00 3.51 F
732 1417 0.744874 CCGAGGGACTATTCAAGCGA 59.255 55.000 0.00 0.0 41.55 4.93 F
1361 2055 1.152963 ACACACCACCAAGCCTCAC 60.153 57.895 0.00 0.0 0.00 3.51 F
1649 2345 0.473755 TGAGAACAGCAAGGGAGCAA 59.526 50.000 0.00 0.0 36.85 3.91 F
2335 3123 1.246737 GGCTTGAGGGTTGCCTTGAG 61.247 60.000 0.00 0.0 43.05 3.02 F
2338 3126 1.360393 TTGAGGGTTGCCTTGAGGGT 61.360 55.000 0.00 0.0 37.43 4.34 F
4215 5335 1.206132 TGTGAGTCCGTTCTGTGTTGT 59.794 47.619 0.00 0.0 0.00 3.32 F
5325 6619 0.036294 GTCTGTCTGGGTGGGTAAGC 60.036 60.000 0.00 0.0 0.00 3.09 F
5883 7184 1.398390 CTCCATGGCGCTAACAACTTC 59.602 52.381 6.96 0.0 0.00 3.01 F
6200 7519 3.879892 GCAGAGAATGGGATGTTCTTACC 59.120 47.826 0.00 0.0 36.13 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 2319 0.524862 CTTGCTGTTCTCATGGGTGC 59.475 55.000 0.00 0.0 0.00 5.01 R
1631 2327 0.877743 GTTGCTCCCTTGCTGTTCTC 59.122 55.000 0.00 0.0 0.00 2.87 R
2335 3123 3.007635 CCTTCCGTCAAACTGAATACCC 58.992 50.000 0.00 0.0 0.00 3.69 R
3187 4088 3.815401 GACACAACACTCCAAGCATTAGT 59.185 43.478 0.00 0.0 0.00 2.24 R
4191 5311 3.541632 ACACAGAACGGACTCACAATTT 58.458 40.909 0.00 0.0 0.00 1.82 R
4620 5741 4.680237 CGGCCCAGTCTTGTGCGA 62.680 66.667 0.00 0.0 0.00 5.10 R
6200 7519 0.523072 CCATTCTTCACCAGGTTGCG 59.477 55.000 0.00 0.0 0.00 4.85 R
7308 8660 5.368145 TGAATATGGACTGCATTACTGGAC 58.632 41.667 0.00 0.0 0.00 4.02 R
7747 9381 0.677098 CAGCTGCTGCAAGATCCTGT 60.677 55.000 17.73 0.0 42.74 4.00 R
7832 9467 1.257415 CTGCTGATCGCGATCTTGTTC 59.743 52.381 39.74 26.0 43.27 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 350 1.264749 CCTGATCGAGAACCCCCACA 61.265 60.000 0.00 0.00 0.00 4.17
352 353 0.106894 GATCGAGAACCCCCACATCC 59.893 60.000 0.00 0.00 0.00 3.51
530 1203 4.240096 CCTCATGATGTTGTTTTTCTGGC 58.760 43.478 0.00 0.00 0.00 4.85
531 1204 4.262121 CCTCATGATGTTGTTTTTCTGGCA 60.262 41.667 0.00 0.00 0.00 4.92
533 1206 4.341806 TCATGATGTTGTTTTTCTGGCACT 59.658 37.500 0.00 0.00 0.00 4.40
534 1207 4.305989 TGATGTTGTTTTTCTGGCACTC 57.694 40.909 0.00 0.00 0.00 3.51
691 1376 1.195442 TGGCGTCAGTGTCCCCAATA 61.195 55.000 0.00 0.00 0.00 1.90
704 1389 4.263550 TGTCCCCAATAAGACCGATCAAAA 60.264 41.667 0.00 0.00 31.76 2.44
719 1404 5.505654 CCGATCAAAAATTAATCACCGAGGG 60.506 44.000 0.00 0.00 0.00 4.30
732 1417 0.744874 CCGAGGGACTATTCAAGCGA 59.255 55.000 0.00 0.00 41.55 4.93
929 1618 1.284785 CTTCCATTACTTGGGGCTCCA 59.715 52.381 0.00 0.00 46.45 3.86
1161 1850 1.319541 CCTCATCCGAGATGTACCGT 58.680 55.000 11.91 0.00 42.34 4.83
1299 1993 7.689400 CAGTCTTTTTGTTGTTTTCTTCATTGC 59.311 33.333 0.00 0.00 0.00 3.56
1361 2055 1.152963 ACACACCACCAAGCCTCAC 60.153 57.895 0.00 0.00 0.00 3.51
1623 2319 3.466836 TGGAAGTGTGTCAGCAGTTTAG 58.533 45.455 0.00 0.00 32.70 1.85
1631 2327 1.470098 GTCAGCAGTTTAGCACCCATG 59.530 52.381 0.00 0.00 36.85 3.66
1649 2345 0.473755 TGAGAACAGCAAGGGAGCAA 59.526 50.000 0.00 0.00 36.85 3.91
1666 2362 1.613437 GCAACCCAAGTACACAGCAAT 59.387 47.619 0.00 0.00 0.00 3.56
1922 2697 8.107095 AGCACATCTCTTTATAACCAGGTTTTA 58.893 33.333 11.02 4.04 0.00 1.52
2022 2804 5.106791 CCTGTAGCAACATTGTTCTCTTCTG 60.107 44.000 0.00 2.96 34.37 3.02
2075 2858 4.941263 AGCTCTTCTGTACAGTGTCTCTAG 59.059 45.833 21.99 11.72 0.00 2.43
2208 2994 8.215926 TCCCATTATAATTTGTTGGAAGTACG 57.784 34.615 3.98 0.00 0.00 3.67
2335 3123 1.246737 GGCTTGAGGGTTGCCTTGAG 61.247 60.000 0.00 0.00 43.05 3.02
2338 3126 1.360393 TTGAGGGTTGCCTTGAGGGT 61.360 55.000 0.00 0.00 37.43 4.34
2578 3370 7.078228 GGTTCTGTTTTATACTCACTTTGCTG 58.922 38.462 0.00 0.00 0.00 4.41
2635 3427 4.794655 GCGTTTTACAAAAGCATTGGAGGA 60.795 41.667 7.12 0.00 0.00 3.71
3187 4088 7.175467 ACACTTGTGAATGAAATAGAAGATGCA 59.825 33.333 7.83 0.00 0.00 3.96
3391 4293 8.494433 TCCCAAGATAATAAGAAGCTTACATGT 58.506 33.333 2.69 2.69 0.00 3.21
3793 4853 6.127647 TGCTTAAGCTAATGATGTTTTCTGGG 60.128 38.462 26.90 0.00 42.66 4.45
4003 5102 9.585099 TTGAAATGCATTTTAATCATCACTACC 57.415 29.630 24.81 8.21 0.00 3.18
4215 5335 1.206132 TGTGAGTCCGTTCTGTGTTGT 59.794 47.619 0.00 0.00 0.00 3.32
4603 5724 7.293073 AGAAGAACCACAGGCATAATTATGAT 58.707 34.615 26.22 12.57 35.75 2.45
4694 5815 2.104792 TCTGGTGTTGAGTTTGGGAGAG 59.895 50.000 0.00 0.00 0.00 3.20
4706 5827 8.840200 TGAGTTTGGGAGAGTAGTATTTATCT 57.160 34.615 0.00 0.00 0.00 1.98
4843 5967 0.443869 CAGCAATACACACTGCCGTC 59.556 55.000 0.00 0.00 39.47 4.79
4877 6004 2.133281 AGCAGCTGCACAATATGGAA 57.867 45.000 38.24 0.00 45.16 3.53
5011 6139 7.120138 GGTCTATTCGTTTAGGTTTTTGATCCA 59.880 37.037 0.00 0.00 0.00 3.41
5026 6154 9.639601 GTTTTTGATCCAGTTTCCCTTATAAAG 57.360 33.333 0.00 0.00 0.00 1.85
5278 6572 4.455533 CAGTAATTGAAGGCTTACACTGCA 59.544 41.667 0.00 0.00 31.64 4.41
5288 6582 4.941873 AGGCTTACACTGCACCTTATTTAC 59.058 41.667 0.00 0.00 0.00 2.01
5325 6619 0.036294 GTCTGTCTGGGTGGGTAAGC 60.036 60.000 0.00 0.00 0.00 3.09
5593 6891 8.568794 GTTTAGCTGGATACCCTCATTTTATTC 58.431 37.037 0.00 0.00 0.00 1.75
5883 7184 1.398390 CTCCATGGCGCTAACAACTTC 59.602 52.381 6.96 0.00 0.00 3.01
6159 7478 6.899393 TCCTTTGTGTAGAATTTTGCAGAT 57.101 33.333 0.00 0.00 0.00 2.90
6200 7519 3.879892 GCAGAGAATGGGATGTTCTTACC 59.120 47.826 0.00 0.00 36.13 2.85
7044 8394 6.486657 CACAATTGGAGTCAAAGGAGTTCTAA 59.513 38.462 10.83 0.00 36.36 2.10
7308 8660 8.134895 GTGTCACAATAACAATATACCCAATGG 58.865 37.037 0.00 0.00 37.80 3.16
7681 9315 6.543831 ACCATAAGAACTATTTCTCATGCACC 59.456 38.462 1.24 0.00 41.56 5.01
7747 9381 2.522185 AGCGAAGTTGTGTCCCTACTA 58.478 47.619 0.00 0.00 0.00 1.82
8070 9716 2.093152 CGTGATGCTGTAAAACGGGTAC 59.907 50.000 0.00 0.00 0.00 3.34
8420 10309 9.822185 AGTGAAGTTTTGAATAGCTCAATTTTT 57.178 25.926 0.00 0.00 43.64 1.94
8482 10371 2.187707 GCATTCGTTTGCATCCATGTC 58.812 47.619 7.33 0.00 42.31 3.06
8606 10548 7.921041 ATCTGTTGAGAATATACTTCCTCCA 57.079 36.000 0.00 0.00 0.00 3.86
8636 10578 6.851222 ATTATAAGAGCGTTTGGATCACTG 57.149 37.500 0.00 0.00 32.03 3.66
8660 10602 6.440647 TGTTCTTTACAGAGGGAGTATCATGT 59.559 38.462 0.00 0.00 31.36 3.21
8702 10644 8.996271 GGTTATTGTTAGAAATAATCCCGTAGG 58.004 37.037 0.00 0.00 39.68 3.18
8733 10675 5.700402 AACAGGAATGTTAGCCTAGTCAT 57.300 39.130 0.00 0.00 32.03 3.06
8782 10724 8.560124 ACTGATATATGGATTAGGATCTTCCC 57.440 38.462 0.00 0.00 37.19 3.97
8783 10725 8.131627 ACTGATATATGGATTAGGATCTTCCCA 58.868 37.037 0.00 0.00 37.19 4.37
8784 10726 8.324191 TGATATATGGATTAGGATCTTCCCAC 57.676 38.462 0.00 0.00 37.19 4.61
8785 10727 7.348274 TGATATATGGATTAGGATCTTCCCACC 59.652 40.741 0.00 0.00 37.19 4.61
8786 10728 3.144068 TGGATTAGGATCTTCCCACCA 57.856 47.619 0.00 0.00 37.19 4.17
8787 10729 3.469859 TGGATTAGGATCTTCCCACCAA 58.530 45.455 0.00 0.00 37.19 3.67
8788 10730 4.054369 TGGATTAGGATCTTCCCACCAAT 58.946 43.478 0.00 0.00 37.19 3.16
8789 10731 4.141181 TGGATTAGGATCTTCCCACCAATG 60.141 45.833 0.00 0.00 37.19 2.82
8790 10732 3.951563 TTAGGATCTTCCCACCAATGG 57.048 47.619 0.00 0.00 46.81 3.16
8791 10733 6.939745 GGATTAGGATCTTCCCACCAATGGA 61.940 48.000 6.16 0.00 39.16 3.41
8792 10734 8.346015 GGATTAGGATCTTCCCACCAATGGAA 62.346 46.154 6.16 0.00 39.16 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.754658 TCCTCGGGCTCCTTCGAC 60.755 66.667 0.00 0.00 0.00 4.20
81 82 2.655685 GTCGGCTCGATCCTTCGC 60.656 66.667 3.43 0.00 45.10 4.70
349 350 0.734889 CGCATCGCCAGAAAAAGGAT 59.265 50.000 0.00 0.00 0.00 3.24
352 353 3.548587 CATATCGCATCGCCAGAAAAAG 58.451 45.455 0.00 0.00 0.00 2.27
451 486 0.249489 CTAGCGTGCAGGGGTCATAC 60.249 60.000 8.72 0.00 0.00 2.39
533 1206 8.427276 GGCTCAGATCACATCATATATAATGGA 58.573 37.037 0.89 0.00 0.00 3.41
534 1207 7.660617 GGGCTCAGATCACATCATATATAATGG 59.339 40.741 0.89 0.00 0.00 3.16
681 1366 2.473070 TGATCGGTCTTATTGGGGACA 58.527 47.619 0.00 0.00 39.83 4.02
691 1376 6.373216 TCGGTGATTAATTTTTGATCGGTCTT 59.627 34.615 0.00 0.00 0.00 3.01
704 1389 6.494666 TGAATAGTCCCTCGGTGATTAATT 57.505 37.500 0.00 0.00 0.00 1.40
719 1404 6.476243 TTTAACCAACTCGCTTGAATAGTC 57.524 37.500 0.00 0.00 30.42 2.59
732 1417 5.659079 TGGGTTTGTGAGAATTTAACCAACT 59.341 36.000 0.00 0.00 39.95 3.16
837 1526 3.165606 CTCATCCAGGAACACAGGC 57.834 57.895 0.00 0.00 0.00 4.85
929 1618 5.819901 GCCTTATTGATCTTGTACTCTTGCT 59.180 40.000 0.00 0.00 0.00 3.91
980 1669 9.035607 CGAACATCTGATTTGCTTAAGTATACT 57.964 33.333 0.00 0.00 0.00 2.12
988 1677 4.252878 TCTGCGAACATCTGATTTGCTTA 58.747 39.130 5.18 0.00 37.36 3.09
1182 1871 0.605319 TAAGCACCGCCTCCAACAAG 60.605 55.000 0.00 0.00 0.00 3.16
1299 1993 6.497785 AGATGAGCACAAAAGAGAATGAAG 57.502 37.500 0.00 0.00 0.00 3.02
1361 2055 2.028567 ACACACACCCACAAAAACAAGG 60.029 45.455 0.00 0.00 0.00 3.61
1522 2218 3.057033 GGTGCAGAGAGTTTCCGTAGTTA 60.057 47.826 0.00 0.00 0.00 2.24
1623 2319 0.524862 CTTGCTGTTCTCATGGGTGC 59.475 55.000 0.00 0.00 0.00 5.01
1631 2327 0.877743 GTTGCTCCCTTGCTGTTCTC 59.122 55.000 0.00 0.00 0.00 2.87
1649 2345 1.423541 TGGATTGCTGTGTACTTGGGT 59.576 47.619 0.00 0.00 0.00 4.51
1666 2362 3.053245 TGTGTTTCCTTTTCTCCCTTGGA 60.053 43.478 0.00 0.00 0.00 3.53
1922 2697 4.695396 ACACATGCATTTTGATTGTGTGT 58.305 34.783 16.84 13.61 46.56 3.72
2022 2804 1.609072 GCTGGAAAGGTTGGAGAACAC 59.391 52.381 0.00 0.00 33.27 3.32
2335 3123 3.007635 CCTTCCGTCAAACTGAATACCC 58.992 50.000 0.00 0.00 0.00 3.69
2338 3126 5.556915 ACAATCCTTCCGTCAAACTGAATA 58.443 37.500 0.00 0.00 0.00 1.75
2578 3370 6.022163 TCCCGATCGGAAACTAGATATTTC 57.978 41.667 35.42 0.00 37.88 2.17
2635 3427 7.441836 GGTAATTTTGTCTTTCACTTTGGGAT 58.558 34.615 0.00 0.00 0.00 3.85
2800 3697 9.899661 AAGTATTACCTATCACATTAGCAAACA 57.100 29.630 0.00 0.00 0.00 2.83
3187 4088 3.815401 GACACAACACTCCAAGCATTAGT 59.185 43.478 0.00 0.00 0.00 2.24
3198 4099 6.560253 ATTTATGTTCTGGACACAACACTC 57.440 37.500 0.00 0.00 42.04 3.51
4191 5311 3.541632 ACACAGAACGGACTCACAATTT 58.458 40.909 0.00 0.00 0.00 1.82
4620 5741 4.680237 CGGCCCAGTCTTGTGCGA 62.680 66.667 0.00 0.00 0.00 5.10
4694 5815 9.262358 GAAACCCAGTCATCAGATAAATACTAC 57.738 37.037 0.00 0.00 0.00 2.73
4706 5827 3.069443 GCCAAAAAGAAACCCAGTCATCA 59.931 43.478 0.00 0.00 0.00 3.07
4877 6004 9.357652 CAATATGAGAAAACGATTGTTGGATTT 57.642 29.630 0.00 0.00 38.62 2.17
4894 6021 4.080072 TGGTGCACCATTACCAATATGAGA 60.080 41.667 34.74 5.84 43.60 3.27
4989 6117 7.989416 ACTGGATCAAAAACCTAAACGAATA 57.011 32.000 0.00 0.00 0.00 1.75
4993 6121 5.918576 GGAAACTGGATCAAAAACCTAAACG 59.081 40.000 0.00 0.00 0.00 3.60
5011 6139 6.122964 GCTGATCCACTTTATAAGGGAAACT 58.877 40.000 0.00 0.00 32.08 2.66
5278 6572 9.871238 CACATGTGTACTCTAAGTAAATAAGGT 57.129 33.333 18.03 0.00 31.62 3.50
5325 6619 2.168326 TCATGTAGCATGGGCATACG 57.832 50.000 8.95 0.00 44.61 3.06
5616 6914 1.837439 TGGCTACACCCAGGAACATAG 59.163 52.381 0.00 0.00 37.83 2.23
5883 7184 4.730613 GCATTGAAACCCTGTATAGCAACG 60.731 45.833 0.00 0.00 0.00 4.10
6159 7478 5.186942 TCTGCCGCTAACCACAATTTATAA 58.813 37.500 0.00 0.00 0.00 0.98
6200 7519 0.523072 CCATTCTTCACCAGGTTGCG 59.477 55.000 0.00 0.00 0.00 4.85
7308 8660 5.368145 TGAATATGGACTGCATTACTGGAC 58.632 41.667 0.00 0.00 0.00 4.02
7681 9315 1.343465 ACAGAGTGTTCCCTACCAACG 59.657 52.381 0.00 0.00 0.00 4.10
7747 9381 0.677098 CAGCTGCTGCAAGATCCTGT 60.677 55.000 17.73 0.00 42.74 4.00
7832 9467 1.257415 CTGCTGATCGCGATCTTGTTC 59.743 52.381 39.74 26.00 43.27 3.18
7835 9470 1.720316 GATCTGCTGATCGCGATCTTG 59.280 52.381 39.74 32.54 41.31 3.02
8070 9716 3.743521 ACCATCCATCGGTAACATCATG 58.256 45.455 0.00 0.00 34.02 3.07
8303 9949 8.378565 CCAACTATGATCATACATACTTTCCCT 58.621 37.037 11.49 0.00 0.00 4.20
8420 10309 9.862371 TTAGCTATTCAACTTGTCAAACAAAAA 57.138 25.926 0.00 0.00 37.69 1.94
8611 10553 7.336931 ACAGTGATCCAAACGCTCTTATAATTT 59.663 33.333 0.00 0.00 0.00 1.82
8614 10556 5.730550 ACAGTGATCCAAACGCTCTTATAA 58.269 37.500 0.00 0.00 0.00 0.98
8636 10578 6.879400 ACATGATACTCCCTCTGTAAAGAAC 58.121 40.000 0.00 0.00 0.00 3.01
8702 10644 6.537660 AGGCTAACATTCCTGTTACGTAAATC 59.462 38.462 10.11 0.00 43.77 2.17
8708 10650 5.007385 ACTAGGCTAACATTCCTGTTACG 57.993 43.478 0.00 0.00 43.77 3.18
8719 10661 6.136857 AGGTGATCTAATGACTAGGCTAACA 58.863 40.000 0.00 0.00 0.00 2.41
8756 10698 8.997734 GGGAAGATCCTAATCCATATATCAGTT 58.002 37.037 6.74 0.00 36.57 3.16
8757 10699 8.131627 TGGGAAGATCCTAATCCATATATCAGT 58.868 37.037 6.74 0.00 36.57 3.41
8758 10700 8.428063 GTGGGAAGATCCTAATCCATATATCAG 58.572 40.741 6.74 0.00 36.57 2.90
8759 10701 7.348274 GGTGGGAAGATCCTAATCCATATATCA 59.652 40.741 6.74 0.00 36.57 2.15
8760 10702 7.348274 TGGTGGGAAGATCCTAATCCATATATC 59.652 40.741 6.74 0.00 36.57 1.63
8761 10703 7.206251 TGGTGGGAAGATCCTAATCCATATAT 58.794 38.462 6.74 0.00 36.57 0.86
8762 10704 6.580167 TGGTGGGAAGATCCTAATCCATATA 58.420 40.000 6.74 0.00 36.57 0.86
8763 10705 5.424068 TGGTGGGAAGATCCTAATCCATAT 58.576 41.667 6.74 0.00 36.57 1.78
8764 10706 4.838403 TGGTGGGAAGATCCTAATCCATA 58.162 43.478 6.74 0.00 36.57 2.74
8765 10707 3.680169 TGGTGGGAAGATCCTAATCCAT 58.320 45.455 6.74 0.00 36.57 3.41
8766 10708 3.144068 TGGTGGGAAGATCCTAATCCA 57.856 47.619 6.74 0.00 36.57 3.41
8767 10709 4.401925 CATTGGTGGGAAGATCCTAATCC 58.598 47.826 0.00 0.00 36.57 3.01
8768 10710 4.104738 TCCATTGGTGGGAAGATCCTAATC 59.895 45.833 1.86 0.00 46.06 1.75
8769 10711 4.054369 TCCATTGGTGGGAAGATCCTAAT 58.946 43.478 1.86 0.00 46.06 1.73
8770 10712 3.469859 TCCATTGGTGGGAAGATCCTAA 58.530 45.455 1.86 0.00 46.06 2.69
8771 10713 3.144068 TCCATTGGTGGGAAGATCCTA 57.856 47.619 1.86 0.00 46.06 2.94
8772 10714 1.985622 TCCATTGGTGGGAAGATCCT 58.014 50.000 1.86 0.00 46.06 3.24
8773 10715 2.826674 TTCCATTGGTGGGAAGATCC 57.173 50.000 1.86 0.00 46.06 3.36
8778 10720 0.899717 GCTGCTTCCATTGGTGGGAA 60.900 55.000 1.86 0.00 46.06 3.97
8779 10721 1.304381 GCTGCTTCCATTGGTGGGA 60.304 57.895 1.86 0.00 46.06 4.37
8780 10722 2.353610 GGCTGCTTCCATTGGTGGG 61.354 63.158 1.86 0.00 46.06 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.