Multiple sequence alignment - TraesCS1B01G082800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G082800 chr1B 100.000 3431 0 0 1 3431 66922479 66925909 0.000000e+00 6336.0
1 TraesCS1B01G082800 chr1B 83.588 1243 188 12 1163 2402 66943491 66942262 0.000000e+00 1151.0
2 TraesCS1B01G082800 chr1D 94.185 1049 41 4 945 1973 46629019 46627971 0.000000e+00 1581.0
3 TraesCS1B01G082800 chr1D 86.903 901 113 5 1163 2062 46645238 46644342 0.000000e+00 1005.0
4 TraesCS1B01G082800 chr1D 90.625 544 40 4 339 881 46625581 46626114 0.000000e+00 712.0
5 TraesCS1B01G082800 chr1D 94.763 401 20 1 2760 3160 481958017 481957618 1.050000e-174 623.0
6 TraesCS1B01G082800 chr1D 92.363 419 28 2 1969 2387 46626791 46626377 8.200000e-166 593.0
7 TraesCS1B01G082800 chr1D 85.973 221 22 5 3210 3425 11677480 11677696 9.580000e-56 228.0
8 TraesCS1B01G082800 chr1D 85.185 135 8 8 3095 3222 11677540 11677669 9.990000e-26 128.0
9 TraesCS1B01G082800 chr1D 81.988 161 16 4 3267 3425 482002856 482003005 1.290000e-24 124.0
10 TraesCS1B01G082800 chr1D 92.500 80 5 1 2414 2492 46629421 46629500 2.800000e-21 113.0
11 TraesCS1B01G082800 chr1D 86.813 91 8 1 3296 3382 11677480 11677570 7.840000e-17 99.0
12 TraesCS1B01G082800 chr1A 83.200 1250 193 12 1157 2402 46441550 46442786 0.000000e+00 1129.0
13 TraesCS1B01G082800 chr1A 85.896 943 84 27 1 913 46375671 46376594 0.000000e+00 959.0
14 TraesCS1B01G082800 chr1A 93.810 420 20 5 2765 3180 548463387 548463804 8.080000e-176 627.0
15 TraesCS1B01G082800 chr1A 86.331 417 53 3 1071 1484 46855086 46854671 5.220000e-123 451.0
16 TraesCS1B01G082800 chr7B 89.038 520 33 10 2766 3282 622522444 622522942 1.050000e-174 623.0
17 TraesCS1B01G082800 chr7B 95.396 391 18 0 2766 3156 648110897 648110507 1.050000e-174 623.0
18 TraesCS1B01G082800 chr7B 84.783 138 11 9 3090 3222 622522832 622522964 2.780000e-26 130.0
19 TraesCS1B01G082800 chr7B 92.105 76 4 2 3351 3425 648110536 648110462 4.680000e-19 106.0
20 TraesCS1B01G082800 chr5D 94.684 395 20 1 2766 3160 7032125 7032518 2.260000e-171 612.0
21 TraesCS1B01G082800 chr5D 84.409 186 20 6 134 315 279302890 279302710 1.270000e-39 174.0
22 TraesCS1B01G082800 chr5D 85.976 164 19 3 151 312 464292349 464292510 4.550000e-39 172.0
23 TraesCS1B01G082800 chr5B 94.301 386 21 1 2767 3152 537903839 537903455 1.060000e-164 590.0
24 TraesCS1B01G082800 chr5B 86.145 166 15 5 152 313 407219553 407219392 4.550000e-39 172.0
25 TraesCS1B01G082800 chr4B 94.057 387 22 1 2766 3152 139542111 139542496 1.370000e-163 586.0
26 TraesCS1B01G082800 chr4B 84.733 131 14 4 3227 3356 139542458 139542583 3.590000e-25 126.0
27 TraesCS1B01G082800 chr6D 85.996 557 56 17 2766 3308 83156663 83157211 8.260000e-161 577.0
28 TraesCS1B01G082800 chr6D 87.500 160 14 6 3269 3425 83157082 83157238 2.720000e-41 180.0
29 TraesCS1B01G082800 chr6D 85.294 170 19 3 151 317 48458134 48457968 1.640000e-38 171.0
30 TraesCS1B01G082800 chr6D 87.619 105 6 6 3296 3398 83156990 83157089 7.780000e-22 115.0
31 TraesCS1B01G082800 chr3D 94.398 357 20 0 2765 3121 488872528 488872172 1.800000e-152 549.0
32 TraesCS1B01G082800 chr3D 84.746 177 17 7 150 320 87925999 87926171 5.890000e-38 169.0
33 TraesCS1B01G082800 chr3D 93.750 48 3 0 3378 3425 452586169 452586122 4.750000e-09 73.1
34 TraesCS1B01G082800 chr2A 78.797 349 58 13 1171 1511 101851307 101850967 1.600000e-53 220.0
35 TraesCS1B01G082800 chr5A 86.471 170 15 5 150 315 320214243 320214408 2.720000e-41 180.0
36 TraesCS1B01G082800 chr3A 91.603 131 7 3 183 312 600920982 600920855 9.780000e-41 178.0
37 TraesCS1B01G082800 chr3A 87.778 90 7 3 3346 3431 474565257 474565168 6.060000e-18 102.0
38 TraesCS1B01G082800 chr3B 85.143 175 18 5 145 315 654649878 654649708 4.550000e-39 172.0
39 TraesCS1B01G082800 chr3B 90.083 121 6 4 3267 3382 27245216 27245335 5.930000e-33 152.0
40 TraesCS1B01G082800 chr7D 81.988 161 16 5 3267 3425 112967504 112967653 1.290000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G082800 chr1B 66922479 66925909 3430 False 6336.000000 6336 100.000000 1 3431 1 chr1B.!!$F1 3430
1 TraesCS1B01G082800 chr1B 66942262 66943491 1229 True 1151.000000 1151 83.588000 1163 2402 1 chr1B.!!$R1 1239
2 TraesCS1B01G082800 chr1D 46626377 46629019 2642 True 1087.000000 1581 93.274000 945 2387 2 chr1D.!!$R3 1442
3 TraesCS1B01G082800 chr1D 46644342 46645238 896 True 1005.000000 1005 86.903000 1163 2062 1 chr1D.!!$R1 899
4 TraesCS1B01G082800 chr1D 46625581 46629500 3919 False 412.500000 712 91.562500 339 2492 2 chr1D.!!$F3 2153
5 TraesCS1B01G082800 chr1A 46441550 46442786 1236 False 1129.000000 1129 83.200000 1157 2402 1 chr1A.!!$F2 1245
6 TraesCS1B01G082800 chr1A 46375671 46376594 923 False 959.000000 959 85.896000 1 913 1 chr1A.!!$F1 912
7 TraesCS1B01G082800 chr7B 622522444 622522964 520 False 376.500000 623 86.910500 2766 3282 2 chr7B.!!$F1 516
8 TraesCS1B01G082800 chr6D 83156663 83157238 575 False 290.666667 577 87.038333 2766 3425 3 chr6D.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 751 0.252881 AGAGGGGTGATCAGAGGCAA 60.253 55.0 0.0 0.0 0.0 4.52 F
1758 2021 0.456221 CTACGCCGTGTCCAAGATCT 59.544 55.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 4636 0.036732 GTTGCAGTGGGTCCATCTGA 59.963 55.0 17.51 6.05 31.53 3.27 R
2660 5843 0.102300 GCCGCAAACACAAAGAACCT 59.898 50.0 0.00 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.941463 GCACGACAGCTATCATCCCG 60.941 60.000 0.00 0.00 0.00 5.14
32 33 2.682494 ATCCCGGTAGCGTGTGGT 60.682 61.111 13.99 0.00 0.00 4.16
33 34 3.014085 ATCCCGGTAGCGTGTGGTG 62.014 63.158 13.99 0.00 0.00 4.17
78 79 2.680339 GCAACAGGTGAGAAATAGCTCC 59.320 50.000 0.00 0.00 33.95 4.70
117 118 2.738521 CCGTCCCAGAAGCACACG 60.739 66.667 0.00 0.00 0.00 4.49
123 124 2.095718 GTCCCAGAAGCACACGAAAATC 60.096 50.000 0.00 0.00 0.00 2.17
228 229 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
325 326 4.082679 AGAGGGAGTATAATTGATCGACGC 60.083 45.833 0.00 0.00 0.00 5.19
361 362 3.355378 CACTGGCCATTCAATGTCCTTA 58.645 45.455 5.51 0.00 0.00 2.69
527 529 8.015658 AGTATGTTGCTTTTCGTATGAAAGAAC 58.984 33.333 9.94 13.35 44.46 3.01
585 587 7.347222 TGAAGAAGCCTTATGGGTCTATCTTAA 59.653 37.037 10.58 3.60 44.35 1.85
593 595 4.689612 TGGGTCTATCTTAAGATGGCAC 57.310 45.455 25.22 19.02 36.05 5.01
601 603 2.835764 TCTTAAGATGGCACGTAACCCT 59.164 45.455 0.00 0.00 0.00 4.34
620 622 5.011982 CCCTGGTATCTATCTTAGGGTGA 57.988 47.826 0.00 0.00 39.97 4.02
631 633 4.332683 TCTTAGGGTGACAGGTGACTAT 57.667 45.455 0.00 0.00 40.21 2.12
637 639 3.454812 GGGTGACAGGTGACTATGGTATT 59.545 47.826 0.00 0.00 40.21 1.89
708 738 0.839946 CATCACTGGGGTTAGAGGGG 59.160 60.000 0.00 0.00 0.00 4.79
714 744 0.419865 TGGGGTTAGAGGGGTGATCA 59.580 55.000 0.00 0.00 0.00 2.92
721 751 0.252881 AGAGGGGTGATCAGAGGCAA 60.253 55.000 0.00 0.00 0.00 4.52
724 754 0.548031 GGGGTGATCAGAGGCAATGA 59.452 55.000 0.00 0.00 0.00 2.57
745 776 1.764854 GGCGGTTGAGGGGAGGATA 60.765 63.158 0.00 0.00 0.00 2.59
761 792 3.811807 ATAGGGCGGCGAGGCTAGT 62.812 63.158 12.98 0.00 45.89 2.57
779 822 2.660802 GGGGTACTGACACCGGTG 59.339 66.667 32.83 32.83 40.10 4.94
780 823 2.660802 GGGTACTGACACCGGTGG 59.339 66.667 36.47 22.10 39.69 4.61
781 824 2.212110 GGGTACTGACACCGGTGGT 61.212 63.158 36.47 26.30 39.69 4.16
790 833 3.153825 ACCGGTGGTGGTAGTTGG 58.846 61.111 6.12 0.00 41.55 3.77
873 916 0.617535 ACCGGTCTGACCATCCATCA 60.618 55.000 25.42 0.00 38.47 3.07
900 1019 2.607038 CCGATGGCTCATAACGAATCGA 60.607 50.000 10.55 0.00 39.30 3.59
922 1079 5.069251 CGACTGACTCAAATTAGGGACCTAT 59.931 44.000 0.00 0.00 0.00 2.57
929 1086 8.350852 ACTCAAATTAGGGACCTATATAGACG 57.649 38.462 11.53 0.00 0.00 4.18
1031 1188 6.688813 GCTGCCAGATTTTAAACTAGATTTCG 59.311 38.462 0.00 0.00 0.00 3.46
1059 1216 0.738412 ACGATTCGGGTAAACCTGCG 60.738 55.000 11.29 4.29 42.21 5.18
1131 1305 3.695060 ACCAGATCAGATTTCTCGTACGT 59.305 43.478 16.05 0.00 0.00 3.57
1140 1314 4.330894 AGATTTCTCGTACGTACGTGATGA 59.669 41.667 37.81 31.00 46.87 2.92
1310 1484 3.273654 TCCCACCTCCGTCTCCCT 61.274 66.667 0.00 0.00 0.00 4.20
1404 1667 3.449227 CCGTCTCCTACAGCGCCA 61.449 66.667 2.29 0.00 0.00 5.69
1496 1759 1.985116 GACACCTCTCCCCGAGCTT 60.985 63.158 0.00 0.00 38.49 3.74
1501 1764 3.382803 CTCTCCCCGAGCTTGCTGG 62.383 68.421 0.00 0.00 31.99 4.85
1605 1868 3.240134 GAGCTGGAACACCGCCTCA 62.240 63.158 0.00 0.00 0.00 3.86
1758 2021 0.456221 CTACGCCGTGTCCAAGATCT 59.544 55.000 0.00 0.00 0.00 2.75
1790 2053 1.866925 CGCCCTCGACCTCAAAAAC 59.133 57.895 0.00 0.00 38.10 2.43
1863 2126 0.904865 AGTGAGGCCCGAGTTCATCA 60.905 55.000 0.00 0.00 0.00 3.07
1871 2134 1.135139 CCCGAGTTCATCACGATGACT 59.865 52.381 9.23 9.76 46.49 3.41
1955 2226 2.939103 AGTCGAATGTAATGGCAAGCTC 59.061 45.455 0.00 0.00 0.00 4.09
1986 4069 3.056328 GGTGGGCTCGCAAACCTC 61.056 66.667 0.00 0.00 0.00 3.85
2054 4137 1.135112 GGATTTGGCATTGAACGGACC 60.135 52.381 0.00 0.00 0.00 4.46
2132 4328 1.201424 GGTGGAAGAAGGTACGGGAT 58.799 55.000 0.00 0.00 0.00 3.85
2241 4649 1.091771 CACGCATCAGATGGACCCAC 61.092 60.000 12.54 0.00 0.00 4.61
2252 4660 2.741092 GACCCACTGCAACGAGGA 59.259 61.111 0.00 0.00 0.00 3.71
2303 4711 2.461300 TGAGAGAGGGGACGATCAAT 57.539 50.000 0.00 0.00 0.00 2.57
2352 5070 3.760035 CTGGGTCGCTGCTACGGT 61.760 66.667 0.00 0.00 0.00 4.83
2395 5421 5.479306 GGTTTTCCCCTTTGAAGCTTAATC 58.521 41.667 0.00 0.00 0.00 1.75
2398 5424 4.927267 TCCCCTTTGAAGCTTAATCTGA 57.073 40.909 0.00 0.00 0.00 3.27
2404 5430 8.531146 CCCCTTTGAAGCTTAATCTGATTTTTA 58.469 33.333 8.38 0.00 0.00 1.52
2405 5431 9.578439 CCCTTTGAAGCTTAATCTGATTTTTAG 57.422 33.333 8.38 5.54 0.00 1.85
2409 5435 8.970691 TGAAGCTTAATCTGATTTTTAGTTGC 57.029 30.769 8.38 2.34 0.00 4.17
2410 5436 8.575589 TGAAGCTTAATCTGATTTTTAGTTGCA 58.424 29.630 8.38 4.66 0.00 4.08
2411 5437 9.410556 GAAGCTTAATCTGATTTTTAGTTGCAA 57.589 29.630 8.38 0.00 0.00 4.08
2412 5438 9.762933 AAGCTTAATCTGATTTTTAGTTGCAAA 57.237 25.926 8.38 0.00 0.00 3.68
2444 5627 5.541953 TCATCCTCTAATGGACTCATGTG 57.458 43.478 0.00 0.00 39.17 3.21
2447 5630 7.012607 TCATCCTCTAATGGACTCATGTGATA 58.987 38.462 0.94 0.00 39.17 2.15
2452 5635 6.829849 TCTAATGGACTCATGTGATATGCAA 58.170 36.000 0.94 0.00 33.18 4.08
2500 5683 9.853177 ATTCCATTTATCCTCAAACTAGTTAGG 57.147 33.333 15.72 15.72 0.00 2.69
2501 5684 8.388656 TCCATTTATCCTCAAACTAGTTAGGT 57.611 34.615 19.52 11.97 0.00 3.08
2502 5685 8.265055 TCCATTTATCCTCAAACTAGTTAGGTG 58.735 37.037 19.52 10.87 0.00 4.00
2503 5686 8.047310 CCATTTATCCTCAAACTAGTTAGGTGT 58.953 37.037 19.52 13.72 0.00 4.16
2504 5687 9.099454 CATTTATCCTCAAACTAGTTAGGTGTC 57.901 37.037 19.52 0.00 0.00 3.67
2505 5688 8.431910 TTTATCCTCAAACTAGTTAGGTGTCT 57.568 34.615 19.52 9.22 0.00 3.41
2506 5689 5.723672 TCCTCAAACTAGTTAGGTGTCTG 57.276 43.478 19.52 9.00 0.00 3.51
2507 5690 5.145564 TCCTCAAACTAGTTAGGTGTCTGT 58.854 41.667 19.52 0.00 0.00 3.41
2508 5691 5.010719 TCCTCAAACTAGTTAGGTGTCTGTG 59.989 44.000 19.52 7.77 0.00 3.66
2509 5692 4.628074 TCAAACTAGTTAGGTGTCTGTGC 58.372 43.478 8.92 0.00 0.00 4.57
2510 5693 3.299340 AACTAGTTAGGTGTCTGTGCG 57.701 47.619 6.26 0.00 0.00 5.34
2511 5694 2.236766 ACTAGTTAGGTGTCTGTGCGT 58.763 47.619 0.00 0.00 0.00 5.24
2512 5695 2.626743 ACTAGTTAGGTGTCTGTGCGTT 59.373 45.455 0.00 0.00 0.00 4.84
2513 5696 1.865865 AGTTAGGTGTCTGTGCGTTG 58.134 50.000 0.00 0.00 0.00 4.10
2514 5697 0.234884 GTTAGGTGTCTGTGCGTTGC 59.765 55.000 0.00 0.00 0.00 4.17
2515 5698 0.105964 TTAGGTGTCTGTGCGTTGCT 59.894 50.000 0.00 0.00 0.00 3.91
2516 5699 0.963225 TAGGTGTCTGTGCGTTGCTA 59.037 50.000 0.00 0.00 0.00 3.49
2517 5700 0.600255 AGGTGTCTGTGCGTTGCTAC 60.600 55.000 0.00 0.00 0.00 3.58
2535 5718 8.831000 GTTGCTACGAAAAAGAAAAAGTTAGA 57.169 30.769 0.00 0.00 0.00 2.10
2536 5719 8.944927 GTTGCTACGAAAAAGAAAAAGTTAGAG 58.055 33.333 0.00 0.00 0.00 2.43
2537 5720 7.636326 TGCTACGAAAAAGAAAAAGTTAGAGG 58.364 34.615 0.00 0.00 0.00 3.69
2538 5721 7.281549 TGCTACGAAAAAGAAAAAGTTAGAGGT 59.718 33.333 0.00 0.00 0.00 3.85
2539 5722 8.768019 GCTACGAAAAAGAAAAAGTTAGAGGTA 58.232 33.333 0.00 0.00 0.00 3.08
2541 5724 7.637229 ACGAAAAAGAAAAAGTTAGAGGTAGC 58.363 34.615 0.00 0.00 0.00 3.58
2542 5725 7.281549 ACGAAAAAGAAAAAGTTAGAGGTAGCA 59.718 33.333 0.00 0.00 0.00 3.49
2543 5726 8.126700 CGAAAAAGAAAAAGTTAGAGGTAGCAA 58.873 33.333 0.00 0.00 0.00 3.91
2544 5727 9.967346 GAAAAAGAAAAAGTTAGAGGTAGCAAT 57.033 29.630 0.00 0.00 0.00 3.56
2553 5736 9.528489 AAAGTTAGAGGTAGCAATATTTTTGGA 57.472 29.630 0.00 0.00 0.00 3.53
2554 5737 8.738645 AGTTAGAGGTAGCAATATTTTTGGAG 57.261 34.615 0.00 0.00 0.00 3.86
2555 5738 7.775561 AGTTAGAGGTAGCAATATTTTTGGAGG 59.224 37.037 0.00 0.00 0.00 4.30
2556 5739 5.449553 AGAGGTAGCAATATTTTTGGAGGG 58.550 41.667 0.00 0.00 0.00 4.30
2557 5740 5.193728 AGAGGTAGCAATATTTTTGGAGGGA 59.806 40.000 0.00 0.00 0.00 4.20
2558 5741 6.030727 AGGTAGCAATATTTTTGGAGGGAT 57.969 37.500 0.00 0.00 0.00 3.85
2559 5742 5.835280 AGGTAGCAATATTTTTGGAGGGATG 59.165 40.000 0.00 0.00 0.00 3.51
2560 5743 5.833131 GGTAGCAATATTTTTGGAGGGATGA 59.167 40.000 0.00 0.00 0.00 2.92
2561 5744 6.015940 GGTAGCAATATTTTTGGAGGGATGAG 60.016 42.308 0.00 0.00 0.00 2.90
2562 5745 4.343239 AGCAATATTTTTGGAGGGATGAGC 59.657 41.667 0.00 0.00 0.00 4.26
2563 5746 4.794003 GCAATATTTTTGGAGGGATGAGCG 60.794 45.833 0.00 0.00 0.00 5.03
2564 5747 2.806945 ATTTTTGGAGGGATGAGCGA 57.193 45.000 0.00 0.00 0.00 4.93
2565 5748 2.577606 TTTTTGGAGGGATGAGCGAA 57.422 45.000 0.00 0.00 0.00 4.70
2566 5749 2.113860 TTTTGGAGGGATGAGCGAAG 57.886 50.000 0.00 0.00 0.00 3.79
2567 5750 0.984230 TTTGGAGGGATGAGCGAAGT 59.016 50.000 0.00 0.00 0.00 3.01
2568 5751 0.250234 TTGGAGGGATGAGCGAAGTG 59.750 55.000 0.00 0.00 0.00 3.16
2569 5752 1.144936 GGAGGGATGAGCGAAGTGG 59.855 63.158 0.00 0.00 0.00 4.00
2570 5753 1.330655 GGAGGGATGAGCGAAGTGGA 61.331 60.000 0.00 0.00 0.00 4.02
2571 5754 0.755686 GAGGGATGAGCGAAGTGGAT 59.244 55.000 0.00 0.00 0.00 3.41
2572 5755 1.139853 GAGGGATGAGCGAAGTGGATT 59.860 52.381 0.00 0.00 0.00 3.01
2573 5756 1.561542 AGGGATGAGCGAAGTGGATTT 59.438 47.619 0.00 0.00 0.00 2.17
2574 5757 1.672881 GGGATGAGCGAAGTGGATTTG 59.327 52.381 0.00 0.00 0.00 2.32
2575 5758 2.632377 GGATGAGCGAAGTGGATTTGA 58.368 47.619 0.00 0.00 0.00 2.69
2576 5759 3.009723 GGATGAGCGAAGTGGATTTGAA 58.990 45.455 0.00 0.00 0.00 2.69
2577 5760 3.629398 GGATGAGCGAAGTGGATTTGAAT 59.371 43.478 0.00 0.00 0.00 2.57
2578 5761 4.816385 GGATGAGCGAAGTGGATTTGAATA 59.184 41.667 0.00 0.00 0.00 1.75
2579 5762 5.471456 GGATGAGCGAAGTGGATTTGAATAT 59.529 40.000 0.00 0.00 0.00 1.28
2580 5763 5.739752 TGAGCGAAGTGGATTTGAATATG 57.260 39.130 0.00 0.00 0.00 1.78
2581 5764 4.576053 TGAGCGAAGTGGATTTGAATATGG 59.424 41.667 0.00 0.00 0.00 2.74
2582 5765 3.316308 AGCGAAGTGGATTTGAATATGGC 59.684 43.478 0.00 0.00 0.00 4.40
2583 5766 3.066621 GCGAAGTGGATTTGAATATGGCA 59.933 43.478 0.00 0.00 0.00 4.92
2584 5767 4.261741 GCGAAGTGGATTTGAATATGGCAT 60.262 41.667 4.88 4.88 0.00 4.40
2585 5768 5.737063 GCGAAGTGGATTTGAATATGGCATT 60.737 40.000 4.78 0.00 0.00 3.56
2586 5769 6.275335 CGAAGTGGATTTGAATATGGCATTT 58.725 36.000 4.78 0.00 0.00 2.32
2587 5770 7.424803 CGAAGTGGATTTGAATATGGCATTTA 58.575 34.615 4.78 0.00 0.00 1.40
2588 5771 8.084073 CGAAGTGGATTTGAATATGGCATTTAT 58.916 33.333 4.78 0.00 0.00 1.40
2589 5772 9.199982 GAAGTGGATTTGAATATGGCATTTATG 57.800 33.333 4.78 0.00 0.00 1.90
2590 5773 8.253867 AGTGGATTTGAATATGGCATTTATGT 57.746 30.769 4.78 0.00 0.00 2.29
2591 5774 8.707449 AGTGGATTTGAATATGGCATTTATGTT 58.293 29.630 4.78 0.00 0.00 2.71
2592 5775 9.328845 GTGGATTTGAATATGGCATTTATGTTT 57.671 29.630 4.78 0.00 0.00 2.83
2593 5776 9.327628 TGGATTTGAATATGGCATTTATGTTTG 57.672 29.630 4.78 0.00 0.00 2.93
2594 5777 8.776470 GGATTTGAATATGGCATTTATGTTTGG 58.224 33.333 4.78 0.00 0.00 3.28
2595 5778 9.328845 GATTTGAATATGGCATTTATGTTTGGT 57.671 29.630 4.78 0.00 0.00 3.67
2596 5779 8.489990 TTTGAATATGGCATTTATGTTTGGTG 57.510 30.769 4.78 0.00 0.00 4.17
2597 5780 6.047870 TGAATATGGCATTTATGTTTGGTGC 58.952 36.000 4.78 0.00 35.17 5.01
2601 5784 3.591196 GCATTTATGTTTGGTGCCAGA 57.409 42.857 0.00 0.00 0.00 3.86
2602 5785 3.924144 GCATTTATGTTTGGTGCCAGAA 58.076 40.909 0.00 0.00 0.00 3.02
2603 5786 3.928375 GCATTTATGTTTGGTGCCAGAAG 59.072 43.478 0.00 0.00 0.00 2.85
2604 5787 4.561326 GCATTTATGTTTGGTGCCAGAAGT 60.561 41.667 0.00 0.00 0.00 3.01
2605 5788 4.846779 TTTATGTTTGGTGCCAGAAGTC 57.153 40.909 0.00 0.00 0.00 3.01
2606 5789 2.664402 ATGTTTGGTGCCAGAAGTCT 57.336 45.000 0.00 0.00 0.00 3.24
2607 5790 2.435372 TGTTTGGTGCCAGAAGTCTT 57.565 45.000 0.00 0.00 0.00 3.01
2608 5791 2.733956 TGTTTGGTGCCAGAAGTCTTT 58.266 42.857 0.00 0.00 0.00 2.52
2609 5792 3.892284 TGTTTGGTGCCAGAAGTCTTTA 58.108 40.909 0.00 0.00 0.00 1.85
2610 5793 3.882888 TGTTTGGTGCCAGAAGTCTTTAG 59.117 43.478 0.00 0.00 0.00 1.85
2611 5794 4.134563 GTTTGGTGCCAGAAGTCTTTAGA 58.865 43.478 0.00 0.00 0.00 2.10
2612 5795 4.640771 TTGGTGCCAGAAGTCTTTAGAT 57.359 40.909 0.00 0.00 0.00 1.98
2613 5796 4.640771 TGGTGCCAGAAGTCTTTAGATT 57.359 40.909 0.00 0.00 0.00 2.40
2614 5797 4.985538 TGGTGCCAGAAGTCTTTAGATTT 58.014 39.130 0.00 0.00 0.00 2.17
2615 5798 5.385198 TGGTGCCAGAAGTCTTTAGATTTT 58.615 37.500 0.00 0.00 0.00 1.82
2616 5799 5.833131 TGGTGCCAGAAGTCTTTAGATTTTT 59.167 36.000 0.00 0.00 0.00 1.94
2617 5800 7.001674 TGGTGCCAGAAGTCTTTAGATTTTTA 58.998 34.615 0.00 0.00 0.00 1.52
2618 5801 7.040686 TGGTGCCAGAAGTCTTTAGATTTTTAC 60.041 37.037 0.00 0.00 0.00 2.01
2619 5802 7.040686 GGTGCCAGAAGTCTTTAGATTTTTACA 60.041 37.037 0.00 0.00 0.00 2.41
2620 5803 8.349983 GTGCCAGAAGTCTTTAGATTTTTACAA 58.650 33.333 0.00 0.00 0.00 2.41
2621 5804 9.077885 TGCCAGAAGTCTTTAGATTTTTACAAT 57.922 29.630 0.00 0.00 0.00 2.71
2676 5859 7.593825 ACAGATTATAGGTTCTTTGTGTTTGC 58.406 34.615 0.00 0.00 0.00 3.68
2677 5860 6.742718 CAGATTATAGGTTCTTTGTGTTTGCG 59.257 38.462 0.00 0.00 0.00 4.85
2678 5861 3.915437 ATAGGTTCTTTGTGTTTGCGG 57.085 42.857 0.00 0.00 0.00 5.69
2679 5862 0.102300 AGGTTCTTTGTGTTTGCGGC 59.898 50.000 0.00 0.00 0.00 6.53
2680 5863 0.179124 GGTTCTTTGTGTTTGCGGCA 60.179 50.000 0.00 0.00 0.00 5.69
2681 5864 1.199624 GTTCTTTGTGTTTGCGGCAG 58.800 50.000 1.67 0.00 0.00 4.85
2682 5865 1.098869 TTCTTTGTGTTTGCGGCAGA 58.901 45.000 1.67 0.00 0.00 4.26
2683 5866 0.380378 TCTTTGTGTTTGCGGCAGAC 59.620 50.000 15.99 15.99 0.00 3.51
2684 5867 0.594796 CTTTGTGTTTGCGGCAGACC 60.595 55.000 19.42 11.88 0.00 3.85
2696 5879 0.582005 GGCAGACCGAAATCGTATGC 59.418 55.000 12.96 12.96 37.11 3.14
2697 5880 1.571919 GCAGACCGAAATCGTATGCT 58.428 50.000 13.64 0.29 35.97 3.79
2698 5881 1.933853 GCAGACCGAAATCGTATGCTT 59.066 47.619 13.64 0.00 35.97 3.91
2699 5882 2.351726 GCAGACCGAAATCGTATGCTTT 59.648 45.455 13.64 0.00 35.97 3.51
2700 5883 3.554324 GCAGACCGAAATCGTATGCTTTA 59.446 43.478 13.64 0.00 35.97 1.85
2701 5884 4.318121 GCAGACCGAAATCGTATGCTTTAG 60.318 45.833 13.64 0.00 35.97 1.85
2702 5885 4.209288 CAGACCGAAATCGTATGCTTTAGG 59.791 45.833 8.38 8.38 37.74 2.69
2703 5886 2.870411 ACCGAAATCGTATGCTTTAGGC 59.130 45.455 9.52 0.00 38.47 3.93
2704 5887 3.131396 CCGAAATCGTATGCTTTAGGCT 58.869 45.455 1.79 0.00 38.66 4.58
2705 5888 4.202182 ACCGAAATCGTATGCTTTAGGCTA 60.202 41.667 9.52 0.00 38.66 3.93
2706 5889 4.748102 CCGAAATCGTATGCTTTAGGCTAA 59.252 41.667 2.04 2.04 38.66 3.09
2707 5890 5.333111 CCGAAATCGTATGCTTTAGGCTAAC 60.333 44.000 6.43 0.00 38.66 2.34
2708 5891 5.233476 CGAAATCGTATGCTTTAGGCTAACA 59.767 40.000 6.43 3.14 36.86 2.41
2709 5892 6.237996 CGAAATCGTATGCTTTAGGCTAACAA 60.238 38.462 6.43 0.00 36.86 2.83
2710 5893 6.604735 AATCGTATGCTTTAGGCTAACAAG 57.395 37.500 6.43 4.01 42.39 3.16
2711 5894 5.333299 TCGTATGCTTTAGGCTAACAAGA 57.667 39.130 6.43 2.51 42.39 3.02
2712 5895 5.914033 TCGTATGCTTTAGGCTAACAAGAT 58.086 37.500 6.43 0.05 42.39 2.40
2713 5896 5.753438 TCGTATGCTTTAGGCTAACAAGATG 59.247 40.000 6.43 2.16 42.39 2.90
2714 5897 5.753438 CGTATGCTTTAGGCTAACAAGATGA 59.247 40.000 6.43 0.00 42.39 2.92
2715 5898 6.074088 CGTATGCTTTAGGCTAACAAGATGAG 60.074 42.308 6.43 0.99 42.39 2.90
2716 5899 4.517285 TGCTTTAGGCTAACAAGATGAGG 58.483 43.478 6.43 0.00 42.39 3.86
2717 5900 3.313803 GCTTTAGGCTAACAAGATGAGGC 59.686 47.826 6.43 0.00 38.06 4.70
2718 5901 4.517285 CTTTAGGCTAACAAGATGAGGCA 58.483 43.478 6.43 0.00 38.19 4.75
2719 5902 2.409948 AGGCTAACAAGATGAGGCAC 57.590 50.000 0.00 0.00 38.19 5.01
2720 5903 1.630369 AGGCTAACAAGATGAGGCACA 59.370 47.619 0.00 0.00 38.19 4.57
2721 5904 2.240667 AGGCTAACAAGATGAGGCACAT 59.759 45.455 0.00 0.00 42.47 3.21
2722 5905 3.019564 GGCTAACAAGATGAGGCACATT 58.980 45.455 0.00 0.00 39.56 2.71
2723 5906 3.445096 GGCTAACAAGATGAGGCACATTT 59.555 43.478 0.00 0.00 39.56 2.32
2724 5907 4.418392 GCTAACAAGATGAGGCACATTTG 58.582 43.478 0.00 8.19 39.56 2.32
2725 5908 4.156556 GCTAACAAGATGAGGCACATTTGA 59.843 41.667 18.59 4.98 39.56 2.69
2726 5909 4.510038 AACAAGATGAGGCACATTTGAC 57.490 40.909 18.59 1.59 39.56 3.18
2727 5910 3.489355 ACAAGATGAGGCACATTTGACA 58.511 40.909 18.59 0.00 39.56 3.58
2728 5911 3.254166 ACAAGATGAGGCACATTTGACAC 59.746 43.478 18.59 0.73 39.56 3.67
2729 5912 2.440409 AGATGAGGCACATTTGACACC 58.560 47.619 0.00 0.00 39.56 4.16
2730 5913 2.161855 GATGAGGCACATTTGACACCA 58.838 47.619 0.00 0.00 39.56 4.17
2731 5914 2.064434 TGAGGCACATTTGACACCAA 57.936 45.000 0.00 0.00 30.07 3.67
2732 5915 2.382882 TGAGGCACATTTGACACCAAA 58.617 42.857 0.00 0.00 45.28 3.28
2733 5916 2.762887 TGAGGCACATTTGACACCAAAA 59.237 40.909 0.00 0.00 44.49 2.44
2734 5917 3.123050 GAGGCACATTTGACACCAAAAC 58.877 45.455 0.00 0.00 44.49 2.43
2735 5918 2.158971 AGGCACATTTGACACCAAAACC 60.159 45.455 0.00 0.00 44.49 3.27
2736 5919 1.857837 GCACATTTGACACCAAAACCG 59.142 47.619 0.00 0.00 44.49 4.44
2737 5920 2.468831 CACATTTGACACCAAAACCGG 58.531 47.619 0.00 0.00 44.49 5.28
2738 5921 1.202475 ACATTTGACACCAAAACCGGC 60.202 47.619 0.00 0.00 44.49 6.13
2739 5922 1.115467 ATTTGACACCAAAACCGGCA 58.885 45.000 0.00 0.00 44.49 5.69
2740 5923 0.173708 TTTGACACCAAAACCGGCAC 59.826 50.000 0.00 0.00 39.15 5.01
2741 5924 0.965866 TTGACACCAAAACCGGCACA 60.966 50.000 0.00 0.00 0.00 4.57
2742 5925 0.753479 TGACACCAAAACCGGCACAT 60.753 50.000 0.00 0.00 0.00 3.21
2743 5926 0.387565 GACACCAAAACCGGCACATT 59.612 50.000 0.00 0.00 0.00 2.71
2744 5927 0.827368 ACACCAAAACCGGCACATTT 59.173 45.000 0.00 0.00 0.00 2.32
2745 5928 1.208293 ACACCAAAACCGGCACATTTT 59.792 42.857 0.00 0.00 0.00 1.82
2746 5929 2.284190 CACCAAAACCGGCACATTTTT 58.716 42.857 0.00 0.00 0.00 1.94
2799 5982 7.764901 AGCATAAAACTACTACTTTACAGGCTC 59.235 37.037 0.00 0.00 0.00 4.70
2806 5989 2.651382 ACTTTACAGGCTCGGGTTTT 57.349 45.000 0.00 0.00 0.00 2.43
2862 6045 2.358737 CAAGTGGGTGGTCGGCTC 60.359 66.667 0.00 0.00 0.00 4.70
2916 6099 8.980143 AACATTTTAAACCGATTTATGACAGG 57.020 30.769 1.76 0.00 30.33 4.00
2918 6101 8.581578 ACATTTTAAACCGATTTATGACAGGTT 58.418 29.630 1.76 0.00 45.99 3.50
2938 6121 4.149598 GTTGGACCCACTCCTAAACAATT 58.850 43.478 0.00 0.00 40.26 2.32
3023 6206 6.502158 TCTTCTTCCTCCTACCATTTCTTCTT 59.498 38.462 0.00 0.00 0.00 2.52
3044 6227 4.788925 TTCCTTGTCTCTTTCTTTCCCA 57.211 40.909 0.00 0.00 0.00 4.37
3054 6237 4.179133 TCTTTCTTTCCCATCTCCTCCTT 58.821 43.478 0.00 0.00 0.00 3.36
3178 6363 2.751837 CCAGGAGAAAAGGCCGCC 60.752 66.667 0.00 0.00 0.00 6.13
3180 6365 3.637273 AGGAGAAAAGGCCGCCGT 61.637 61.111 3.05 0.00 0.00 5.68
3181 6366 2.266689 GGAGAAAAGGCCGCCGTA 59.733 61.111 3.05 0.00 0.00 4.02
3256 6442 4.090588 CGCCACGCCCTAGGGAAA 62.091 66.667 33.21 0.00 37.50 3.13
3257 6443 2.124695 GCCACGCCCTAGGGAAAG 60.125 66.667 33.21 22.45 37.50 2.62
3258 6444 2.590092 CCACGCCCTAGGGAAAGG 59.410 66.667 33.21 23.22 37.50 3.11
3265 6451 2.632831 CCTAGGGAAAGGGCCATCA 58.367 57.895 6.18 0.00 32.55 3.07
3266 6452 0.183731 CCTAGGGAAAGGGCCATCAC 59.816 60.000 6.18 4.64 32.55 3.06
3267 6453 0.179045 CTAGGGAAAGGGCCATCACG 60.179 60.000 6.18 0.00 0.00 4.35
3268 6454 2.265467 TAGGGAAAGGGCCATCACGC 62.265 60.000 6.18 3.77 0.00 5.34
3275 6461 4.424711 GGCCATCACGCCCAGGAA 62.425 66.667 0.00 0.00 43.66 3.36
3276 6462 3.134127 GCCATCACGCCCAGGAAC 61.134 66.667 0.00 0.00 0.00 3.62
3277 6463 2.350895 CCATCACGCCCAGGAACA 59.649 61.111 0.00 0.00 0.00 3.18
3278 6464 1.303236 CCATCACGCCCAGGAACAA 60.303 57.895 0.00 0.00 0.00 2.83
3279 6465 1.308069 CCATCACGCCCAGGAACAAG 61.308 60.000 0.00 0.00 0.00 3.16
3280 6466 1.002134 ATCACGCCCAGGAACAAGG 60.002 57.895 0.00 0.00 0.00 3.61
3281 6467 3.365265 CACGCCCAGGAACAAGGC 61.365 66.667 0.00 0.00 44.01 4.35
3282 6468 4.660938 ACGCCCAGGAACAAGGCC 62.661 66.667 0.00 0.00 44.51 5.19
3284 6470 4.344865 GCCCAGGAACAAGGCCGA 62.345 66.667 0.00 0.00 42.04 5.54
3285 6471 2.434331 CCCAGGAACAAGGCCGAA 59.566 61.111 0.00 0.00 0.00 4.30
3286 6472 1.971695 CCCAGGAACAAGGCCGAAC 60.972 63.158 0.00 0.00 0.00 3.95
3287 6473 2.325082 CCAGGAACAAGGCCGAACG 61.325 63.158 0.00 0.00 0.00 3.95
3288 6474 2.668550 AGGAACAAGGCCGAACGC 60.669 61.111 0.00 0.00 0.00 4.84
3315 6501 2.044551 CTCCCAGGAGCAAAGGCC 60.045 66.667 0.00 0.00 42.56 5.19
3316 6502 3.984193 CTCCCAGGAGCAAAGGCCG 62.984 68.421 0.00 0.00 42.56 6.13
3318 6504 4.729918 CCAGGAGCAAAGGCCGCT 62.730 66.667 2.96 2.96 44.10 5.52
3319 6505 3.437795 CAGGAGCAAAGGCCGCTG 61.438 66.667 8.48 5.54 40.63 5.18
3372 6590 4.785453 CCAGGAGCAAGGCCGGTC 62.785 72.222 0.00 0.00 0.00 4.79
3427 6652 4.020617 CCGGCAAGGAGCTCCACA 62.021 66.667 33.90 0.00 45.00 4.17
3428 6653 2.270205 CGGCAAGGAGCTCCACAT 59.730 61.111 33.90 17.12 44.79 3.21
3429 6654 2.110967 CGGCAAGGAGCTCCACATG 61.111 63.158 33.90 27.17 44.79 3.21
3430 6655 1.751927 GGCAAGGAGCTCCACATGG 60.752 63.158 33.90 18.18 44.79 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.969894 GCTACCGGGATGATAGCTGT 59.030 55.000 6.32 0.00 36.68 4.40
13 14 2.717044 CCACACGCTACCGGGATGA 61.717 63.158 6.32 0.00 41.39 2.92
15 16 2.682494 ACCACACGCTACCGGGAT 60.682 61.111 6.32 0.00 41.39 3.85
20 21 2.264794 CCTCCACCACACGCTACC 59.735 66.667 0.00 0.00 0.00 3.18
32 33 1.968493 AGAACTTACGTCTTGCCTCCA 59.032 47.619 0.00 0.00 0.00 3.86
33 34 2.745515 AGAACTTACGTCTTGCCTCC 57.254 50.000 0.00 0.00 0.00 4.30
96 97 2.035442 GTGCTTCTGGGACGGCTTC 61.035 63.158 0.00 0.00 32.53 3.86
102 103 1.305201 TTTTCGTGTGCTTCTGGGAC 58.695 50.000 0.00 0.00 36.78 4.46
117 118 7.106239 TCTTGAGGGACAGTGATTAGATTTTC 58.894 38.462 0.00 0.00 0.00 2.29
250 251 9.429359 GAGATTTCAATATGGACTACATTCGAT 57.571 33.333 0.00 0.00 41.03 3.59
251 252 8.642432 AGAGATTTCAATATGGACTACATTCGA 58.358 33.333 0.00 0.00 41.03 3.71
252 253 8.824159 AGAGATTTCAATATGGACTACATTCG 57.176 34.615 0.00 0.00 41.03 3.34
297 298 7.711339 GTCGATCAATTATACTCCCTCTGTTTT 59.289 37.037 0.00 0.00 0.00 2.43
298 299 7.210873 GTCGATCAATTATACTCCCTCTGTTT 58.789 38.462 0.00 0.00 0.00 2.83
316 317 2.087462 CTAGGGCCATGCGTCGATCA 62.087 60.000 6.18 0.00 0.00 2.92
361 362 8.730680 GTGTGGTGAGTAATTAAGTGATGAATT 58.269 33.333 0.00 0.00 0.00 2.17
375 376 7.704899 CACGATAAATATGAGTGTGGTGAGTAA 59.295 37.037 0.00 0.00 0.00 2.24
499 500 8.227791 TCTTTCATACGAAAAGCAACATACTTC 58.772 33.333 0.00 0.00 40.57 3.01
527 529 1.475403 TCCTTTCCTCTGGACGCTAG 58.525 55.000 0.00 0.00 0.00 3.42
559 561 5.219739 AGATAGACCCATAAGGCTTCTTCA 58.780 41.667 1.30 0.00 40.58 3.02
585 587 1.198759 ACCAGGGTTACGTGCCATCT 61.199 55.000 12.09 0.03 0.00 2.90
593 595 5.418209 CCCTAAGATAGATACCAGGGTTACG 59.582 48.000 0.00 0.00 38.34 3.18
601 603 5.103215 ACCTGTCACCCTAAGATAGATACCA 60.103 44.000 0.00 0.00 0.00 3.25
620 622 8.871125 CCTAAGATAAATACCATAGTCACCTGT 58.129 37.037 0.00 0.00 0.00 4.00
631 633 6.126883 CCCACACACTCCTAAGATAAATACCA 60.127 42.308 0.00 0.00 0.00 3.25
637 639 3.112263 CCCCCACACACTCCTAAGATAA 58.888 50.000 0.00 0.00 0.00 1.75
694 724 1.132500 GATCACCCCTCTAACCCCAG 58.868 60.000 0.00 0.00 0.00 4.45
695 725 0.419865 TGATCACCCCTCTAACCCCA 59.580 55.000 0.00 0.00 0.00 4.96
708 738 0.935898 CGCTCATTGCCTCTGATCAC 59.064 55.000 0.00 0.00 38.78 3.06
714 744 4.845580 CCGCCGCTCATTGCCTCT 62.846 66.667 0.00 0.00 38.78 3.69
721 751 4.473520 CCCTCAACCGCCGCTCAT 62.474 66.667 0.00 0.00 0.00 2.90
743 774 2.992114 CTAGCCTCGCCGCCCTAT 60.992 66.667 0.00 0.00 0.00 2.57
761 792 2.202053 ACCGGTGTCAGTACCCCA 59.798 61.111 6.12 0.00 37.44 4.96
778 821 0.820074 CAAACCGCCAACTACCACCA 60.820 55.000 0.00 0.00 0.00 4.17
779 822 1.520600 CCAAACCGCCAACTACCACC 61.521 60.000 0.00 0.00 0.00 4.61
780 823 1.953772 CCAAACCGCCAACTACCAC 59.046 57.895 0.00 0.00 0.00 4.16
781 824 1.899534 GCCAAACCGCCAACTACCA 60.900 57.895 0.00 0.00 0.00 3.25
782 825 1.862602 CTGCCAAACCGCCAACTACC 61.863 60.000 0.00 0.00 0.00 3.18
783 826 1.170290 ACTGCCAAACCGCCAACTAC 61.170 55.000 0.00 0.00 0.00 2.73
784 827 0.466555 AACTGCCAAACCGCCAACTA 60.467 50.000 0.00 0.00 0.00 2.24
785 828 0.466555 TAACTGCCAAACCGCCAACT 60.467 50.000 0.00 0.00 0.00 3.16
786 829 0.039527 CTAACTGCCAAACCGCCAAC 60.040 55.000 0.00 0.00 0.00 3.77
787 830 0.466555 ACTAACTGCCAAACCGCCAA 60.467 50.000 0.00 0.00 0.00 4.52
788 831 0.466555 AACTAACTGCCAAACCGCCA 60.467 50.000 0.00 0.00 0.00 5.69
789 832 0.039527 CAACTAACTGCCAAACCGCC 60.040 55.000 0.00 0.00 0.00 6.13
790 833 0.039527 CCAACTAACTGCCAAACCGC 60.040 55.000 0.00 0.00 0.00 5.68
800 843 1.752788 GCAACCACCCACCAACTAACT 60.753 52.381 0.00 0.00 0.00 2.24
873 916 3.509967 TCGTTATGAGCCATCGGATGTAT 59.490 43.478 16.29 4.71 0.00 2.29
900 1019 9.315363 CTATATAGGTCCCTAATTTGAGTCAGT 57.685 37.037 1.40 0.00 31.73 3.41
947 1104 2.518949 CGTGGGATTCAGCGATTTTTG 58.481 47.619 0.00 0.00 0.00 2.44
993 1150 0.473755 TGGCAGCGTGGATATTGGAT 59.526 50.000 0.00 0.00 0.00 3.41
1059 1216 2.786777 TGCATCCATGGAGCATGATAC 58.213 47.619 25.68 8.30 43.81 2.24
1102 1259 0.745845 AATCTGATCTGGTGCGCCAC 60.746 55.000 16.89 6.67 40.46 5.01
1104 1261 0.659957 GAAATCTGATCTGGTGCGCC 59.340 55.000 10.11 10.11 0.00 6.53
1105 1262 1.596727 GAGAAATCTGATCTGGTGCGC 59.403 52.381 0.00 0.00 0.00 6.09
1106 1263 1.857217 CGAGAAATCTGATCTGGTGCG 59.143 52.381 0.00 0.00 0.00 5.34
1107 1264 2.898705 ACGAGAAATCTGATCTGGTGC 58.101 47.619 0.00 0.00 35.00 5.01
1109 1266 3.695060 ACGTACGAGAAATCTGATCTGGT 59.305 43.478 24.41 2.30 38.97 4.00
1131 1305 0.533032 TTGGCATCCGTCATCACGTA 59.467 50.000 0.00 0.00 45.17 3.57
1140 1314 2.325082 GCTGACGTTTGGCATCCGT 61.325 57.895 11.11 11.11 37.56 4.69
1146 1320 4.389576 CAGGCGCTGACGTTTGGC 62.390 66.667 7.64 0.00 42.83 4.52
1409 1672 1.228657 GCACGAGGAAGAAGGCGTTT 61.229 55.000 0.00 0.00 34.37 3.60
1496 1759 4.687215 GCACGCAGGAGACCAGCA 62.687 66.667 6.06 0.00 32.59 4.41
1586 1849 2.925170 AGGCGGTGTTCCAGCTCT 60.925 61.111 0.00 0.00 35.06 4.09
1605 1868 0.177836 TTGTGGATCATGACGGCGAT 59.822 50.000 16.62 0.00 0.00 4.58
1821 2084 3.332919 CGGATATGATCTCAAAGCCAGG 58.667 50.000 0.00 0.00 0.00 4.45
1863 2126 0.960861 TGAGGCTCGTCAGTCATCGT 60.961 55.000 10.42 0.00 0.00 3.73
1871 2134 0.321346 TTTGCAGATGAGGCTCGTCA 59.679 50.000 32.21 14.69 34.91 4.35
1955 2226 2.124983 CACCGCCTGACCATGAGG 60.125 66.667 0.00 0.00 42.21 3.86
2054 4137 3.984200 GAAGACCTCGAACCGGCGG 62.984 68.421 27.06 27.06 0.00 6.13
2078 4161 2.436115 GGGCGGTAGCTGTTGTCC 60.436 66.667 0.00 0.00 44.37 4.02
2228 4636 0.036732 GTTGCAGTGGGTCCATCTGA 59.963 55.000 17.51 6.05 31.53 3.27
2241 4649 0.534412 AGTGGATCTCCTCGTTGCAG 59.466 55.000 0.00 0.00 36.82 4.41
2252 4660 2.122167 GGAGTCGCCGAGTGGATCT 61.122 63.158 0.00 0.00 37.49 2.75
2331 4766 3.774528 TAGCAGCGACCCAGGCAG 61.775 66.667 0.00 0.00 0.00 4.85
2334 4769 4.514577 CCGTAGCAGCGACCCAGG 62.515 72.222 0.00 0.00 0.00 4.45
2483 5666 5.780793 ACAGACACCTAACTAGTTTGAGGAT 59.219 40.000 25.04 15.16 33.04 3.24
2484 5667 5.010719 CACAGACACCTAACTAGTTTGAGGA 59.989 44.000 25.04 3.49 33.04 3.71
2485 5668 5.230942 CACAGACACCTAACTAGTTTGAGG 58.769 45.833 19.00 19.00 35.05 3.86
2487 5670 4.628074 GCACAGACACCTAACTAGTTTGA 58.372 43.478 14.49 0.00 0.00 2.69
2488 5671 3.428870 CGCACAGACACCTAACTAGTTTG 59.571 47.826 14.49 11.84 0.00 2.93
2489 5672 3.069158 ACGCACAGACACCTAACTAGTTT 59.931 43.478 14.49 0.00 0.00 2.66
2492 5675 2.987149 CAACGCACAGACACCTAACTAG 59.013 50.000 0.00 0.00 0.00 2.57
2493 5676 2.864882 GCAACGCACAGACACCTAACTA 60.865 50.000 0.00 0.00 0.00 2.24
2494 5677 1.865865 CAACGCACAGACACCTAACT 58.134 50.000 0.00 0.00 0.00 2.24
2495 5678 0.234884 GCAACGCACAGACACCTAAC 59.765 55.000 0.00 0.00 0.00 2.34
2496 5679 0.105964 AGCAACGCACAGACACCTAA 59.894 50.000 0.00 0.00 0.00 2.69
2497 5680 0.963225 TAGCAACGCACAGACACCTA 59.037 50.000 0.00 0.00 0.00 3.08
2498 5681 0.600255 GTAGCAACGCACAGACACCT 60.600 55.000 0.00 0.00 0.00 4.00
2499 5682 1.860078 GTAGCAACGCACAGACACC 59.140 57.895 0.00 0.00 0.00 4.16
2500 5683 1.487231 CGTAGCAACGCACAGACAC 59.513 57.895 0.00 0.00 43.12 3.67
2501 5684 3.930838 CGTAGCAACGCACAGACA 58.069 55.556 0.00 0.00 43.12 3.41
2510 5693 8.831000 TCTAACTTTTTCTTTTTCGTAGCAAC 57.169 30.769 0.00 0.00 0.00 4.17
2511 5694 8.126700 CCTCTAACTTTTTCTTTTTCGTAGCAA 58.873 33.333 0.00 0.00 0.00 3.91
2512 5695 7.281549 ACCTCTAACTTTTTCTTTTTCGTAGCA 59.718 33.333 0.00 0.00 0.00 3.49
2513 5696 7.637229 ACCTCTAACTTTTTCTTTTTCGTAGC 58.363 34.615 0.00 0.00 0.00 3.58
2515 5698 8.768019 GCTACCTCTAACTTTTTCTTTTTCGTA 58.232 33.333 0.00 0.00 0.00 3.43
2516 5699 7.281549 TGCTACCTCTAACTTTTTCTTTTTCGT 59.718 33.333 0.00 0.00 0.00 3.85
2517 5700 7.636326 TGCTACCTCTAACTTTTTCTTTTTCG 58.364 34.615 0.00 0.00 0.00 3.46
2518 5701 9.967346 ATTGCTACCTCTAACTTTTTCTTTTTC 57.033 29.630 0.00 0.00 0.00 2.29
2527 5710 9.528489 TCCAAAAATATTGCTACCTCTAACTTT 57.472 29.630 0.00 0.00 0.00 2.66
2528 5711 9.178758 CTCCAAAAATATTGCTACCTCTAACTT 57.821 33.333 0.00 0.00 0.00 2.66
2529 5712 7.775561 CCTCCAAAAATATTGCTACCTCTAACT 59.224 37.037 0.00 0.00 0.00 2.24
2530 5713 7.013369 CCCTCCAAAAATATTGCTACCTCTAAC 59.987 40.741 0.00 0.00 0.00 2.34
2531 5714 7.060421 CCCTCCAAAAATATTGCTACCTCTAA 58.940 38.462 0.00 0.00 0.00 2.10
2532 5715 6.388689 TCCCTCCAAAAATATTGCTACCTCTA 59.611 38.462 0.00 0.00 0.00 2.43
2533 5716 5.193728 TCCCTCCAAAAATATTGCTACCTCT 59.806 40.000 0.00 0.00 0.00 3.69
2534 5717 5.445964 TCCCTCCAAAAATATTGCTACCTC 58.554 41.667 0.00 0.00 0.00 3.85
2535 5718 5.466127 TCCCTCCAAAAATATTGCTACCT 57.534 39.130 0.00 0.00 0.00 3.08
2536 5719 5.833131 TCATCCCTCCAAAAATATTGCTACC 59.167 40.000 0.00 0.00 0.00 3.18
2537 5720 6.515696 GCTCATCCCTCCAAAAATATTGCTAC 60.516 42.308 0.00 0.00 0.00 3.58
2538 5721 5.536161 GCTCATCCCTCCAAAAATATTGCTA 59.464 40.000 0.00 0.00 0.00 3.49
2539 5722 4.343239 GCTCATCCCTCCAAAAATATTGCT 59.657 41.667 0.00 0.00 0.00 3.91
2540 5723 4.625028 GCTCATCCCTCCAAAAATATTGC 58.375 43.478 0.00 0.00 0.00 3.56
2541 5724 4.580167 TCGCTCATCCCTCCAAAAATATTG 59.420 41.667 0.00 0.00 0.00 1.90
2542 5725 4.792068 TCGCTCATCCCTCCAAAAATATT 58.208 39.130 0.00 0.00 0.00 1.28
2543 5726 4.437682 TCGCTCATCCCTCCAAAAATAT 57.562 40.909 0.00 0.00 0.00 1.28
2544 5727 3.924114 TCGCTCATCCCTCCAAAAATA 57.076 42.857 0.00 0.00 0.00 1.40
2545 5728 2.806945 TCGCTCATCCCTCCAAAAAT 57.193 45.000 0.00 0.00 0.00 1.82
2546 5729 2.224769 ACTTCGCTCATCCCTCCAAAAA 60.225 45.455 0.00 0.00 0.00 1.94
2547 5730 1.351017 ACTTCGCTCATCCCTCCAAAA 59.649 47.619 0.00 0.00 0.00 2.44
2548 5731 0.984230 ACTTCGCTCATCCCTCCAAA 59.016 50.000 0.00 0.00 0.00 3.28
2549 5732 0.250234 CACTTCGCTCATCCCTCCAA 59.750 55.000 0.00 0.00 0.00 3.53
2550 5733 1.617018 CCACTTCGCTCATCCCTCCA 61.617 60.000 0.00 0.00 0.00 3.86
2551 5734 1.144936 CCACTTCGCTCATCCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
2552 5735 0.755686 ATCCACTTCGCTCATCCCTC 59.244 55.000 0.00 0.00 0.00 4.30
2553 5736 1.207791 AATCCACTTCGCTCATCCCT 58.792 50.000 0.00 0.00 0.00 4.20
2554 5737 1.672881 CAAATCCACTTCGCTCATCCC 59.327 52.381 0.00 0.00 0.00 3.85
2555 5738 2.632377 TCAAATCCACTTCGCTCATCC 58.368 47.619 0.00 0.00 0.00 3.51
2556 5739 4.889832 ATTCAAATCCACTTCGCTCATC 57.110 40.909 0.00 0.00 0.00 2.92
2557 5740 5.240183 CCATATTCAAATCCACTTCGCTCAT 59.760 40.000 0.00 0.00 0.00 2.90
2558 5741 4.576053 CCATATTCAAATCCACTTCGCTCA 59.424 41.667 0.00 0.00 0.00 4.26
2559 5742 4.555511 GCCATATTCAAATCCACTTCGCTC 60.556 45.833 0.00 0.00 0.00 5.03
2560 5743 3.316308 GCCATATTCAAATCCACTTCGCT 59.684 43.478 0.00 0.00 0.00 4.93
2561 5744 3.066621 TGCCATATTCAAATCCACTTCGC 59.933 43.478 0.00 0.00 0.00 4.70
2562 5745 4.898829 TGCCATATTCAAATCCACTTCG 57.101 40.909 0.00 0.00 0.00 3.79
2563 5746 9.199982 CATAAATGCCATATTCAAATCCACTTC 57.800 33.333 0.00 0.00 0.00 3.01
2564 5747 8.707449 ACATAAATGCCATATTCAAATCCACTT 58.293 29.630 0.00 0.00 0.00 3.16
2565 5748 8.253867 ACATAAATGCCATATTCAAATCCACT 57.746 30.769 0.00 0.00 0.00 4.00
2566 5749 8.891671 AACATAAATGCCATATTCAAATCCAC 57.108 30.769 0.00 0.00 0.00 4.02
2567 5750 9.327628 CAAACATAAATGCCATATTCAAATCCA 57.672 29.630 0.00 0.00 0.00 3.41
2568 5751 8.776470 CCAAACATAAATGCCATATTCAAATCC 58.224 33.333 0.00 0.00 0.00 3.01
2569 5752 9.328845 ACCAAACATAAATGCCATATTCAAATC 57.671 29.630 0.00 0.00 0.00 2.17
2570 5753 9.111613 CACCAAACATAAATGCCATATTCAAAT 57.888 29.630 0.00 0.00 0.00 2.32
2571 5754 7.065563 GCACCAAACATAAATGCCATATTCAAA 59.934 33.333 0.00 0.00 0.00 2.69
2572 5755 6.538021 GCACCAAACATAAATGCCATATTCAA 59.462 34.615 0.00 0.00 0.00 2.69
2573 5756 6.047870 GCACCAAACATAAATGCCATATTCA 58.952 36.000 0.00 0.00 0.00 2.57
2574 5757 6.529463 GCACCAAACATAAATGCCATATTC 57.471 37.500 0.00 0.00 0.00 1.75
2581 5764 3.591196 TCTGGCACCAAACATAAATGC 57.409 42.857 0.00 0.00 35.51 3.56
2582 5765 5.047802 AGACTTCTGGCACCAAACATAAATG 60.048 40.000 0.00 0.00 0.00 2.32
2583 5766 5.079643 AGACTTCTGGCACCAAACATAAAT 58.920 37.500 0.00 0.00 0.00 1.40
2584 5767 4.469657 AGACTTCTGGCACCAAACATAAA 58.530 39.130 0.00 0.00 0.00 1.40
2585 5768 4.098914 AGACTTCTGGCACCAAACATAA 57.901 40.909 0.00 0.00 0.00 1.90
2586 5769 3.788227 AGACTTCTGGCACCAAACATA 57.212 42.857 0.00 0.00 0.00 2.29
2587 5770 2.664402 AGACTTCTGGCACCAAACAT 57.336 45.000 0.00 0.00 0.00 2.71
2588 5771 2.435372 AAGACTTCTGGCACCAAACA 57.565 45.000 0.00 0.00 0.00 2.83
2589 5772 4.134563 TCTAAAGACTTCTGGCACCAAAC 58.865 43.478 0.00 0.00 0.00 2.93
2590 5773 4.431416 TCTAAAGACTTCTGGCACCAAA 57.569 40.909 0.00 0.00 0.00 3.28
2591 5774 4.640771 ATCTAAAGACTTCTGGCACCAA 57.359 40.909 0.00 0.00 0.00 3.67
2592 5775 4.640771 AATCTAAAGACTTCTGGCACCA 57.359 40.909 0.00 0.00 0.00 4.17
2593 5776 5.966742 AAAATCTAAAGACTTCTGGCACC 57.033 39.130 0.00 0.00 0.00 5.01
2594 5777 7.871853 TGTAAAAATCTAAAGACTTCTGGCAC 58.128 34.615 0.00 0.00 0.00 5.01
2595 5778 8.458573 TTGTAAAAATCTAAAGACTTCTGGCA 57.541 30.769 0.00 0.00 0.00 4.92
2650 5833 8.726988 GCAAACACAAAGAACCTATAATCTGTA 58.273 33.333 0.00 0.00 0.00 2.74
2651 5834 7.573096 CGCAAACACAAAGAACCTATAATCTGT 60.573 37.037 0.00 0.00 0.00 3.41
2652 5835 6.742718 CGCAAACACAAAGAACCTATAATCTG 59.257 38.462 0.00 0.00 0.00 2.90
2653 5836 6.128007 CCGCAAACACAAAGAACCTATAATCT 60.128 38.462 0.00 0.00 0.00 2.40
2654 5837 6.027749 CCGCAAACACAAAGAACCTATAATC 58.972 40.000 0.00 0.00 0.00 1.75
2655 5838 5.621329 GCCGCAAACACAAAGAACCTATAAT 60.621 40.000 0.00 0.00 0.00 1.28
2656 5839 4.320641 GCCGCAAACACAAAGAACCTATAA 60.321 41.667 0.00 0.00 0.00 0.98
2657 5840 3.189702 GCCGCAAACACAAAGAACCTATA 59.810 43.478 0.00 0.00 0.00 1.31
2658 5841 2.030274 GCCGCAAACACAAAGAACCTAT 60.030 45.455 0.00 0.00 0.00 2.57
2659 5842 1.335496 GCCGCAAACACAAAGAACCTA 59.665 47.619 0.00 0.00 0.00 3.08
2660 5843 0.102300 GCCGCAAACACAAAGAACCT 59.898 50.000 0.00 0.00 0.00 3.50
2661 5844 0.179124 TGCCGCAAACACAAAGAACC 60.179 50.000 0.00 0.00 0.00 3.62
2662 5845 1.199624 CTGCCGCAAACACAAAGAAC 58.800 50.000 0.00 0.00 0.00 3.01
2663 5846 1.098869 TCTGCCGCAAACACAAAGAA 58.901 45.000 0.00 0.00 0.00 2.52
2664 5847 0.380378 GTCTGCCGCAAACACAAAGA 59.620 50.000 0.00 0.00 0.00 2.52
2665 5848 0.594796 GGTCTGCCGCAAACACAAAG 60.595 55.000 0.00 0.00 0.00 2.77
2666 5849 1.435515 GGTCTGCCGCAAACACAAA 59.564 52.632 0.00 0.00 0.00 2.83
2667 5850 3.115556 GGTCTGCCGCAAACACAA 58.884 55.556 0.00 0.00 0.00 3.33
2677 5860 0.582005 GCATACGATTTCGGTCTGCC 59.418 55.000 4.84 0.00 44.95 4.85
2678 5861 1.571919 AGCATACGATTTCGGTCTGC 58.428 50.000 4.84 9.59 44.95 4.26
2679 5862 4.209288 CCTAAAGCATACGATTTCGGTCTG 59.791 45.833 4.84 0.42 44.95 3.51
2680 5863 4.369182 CCTAAAGCATACGATTTCGGTCT 58.631 43.478 4.84 0.00 44.95 3.85
2681 5864 3.059800 GCCTAAAGCATACGATTTCGGTC 60.060 47.826 4.84 0.00 42.35 4.79
2682 5865 2.870411 GCCTAAAGCATACGATTTCGGT 59.130 45.455 4.84 0.00 42.35 4.69
2683 5866 3.521524 GCCTAAAGCATACGATTTCGG 57.478 47.619 4.84 0.00 42.35 4.30
2695 5878 3.313803 GCCTCATCTTGTTAGCCTAAAGC 59.686 47.826 0.00 0.00 44.25 3.51
2696 5879 4.333926 GTGCCTCATCTTGTTAGCCTAAAG 59.666 45.833 0.00 0.00 0.00 1.85
2697 5880 4.261801 GTGCCTCATCTTGTTAGCCTAAA 58.738 43.478 0.00 0.00 0.00 1.85
2698 5881 3.263170 TGTGCCTCATCTTGTTAGCCTAA 59.737 43.478 0.00 0.00 0.00 2.69
2699 5882 2.837591 TGTGCCTCATCTTGTTAGCCTA 59.162 45.455 0.00 0.00 0.00 3.93
2700 5883 1.630369 TGTGCCTCATCTTGTTAGCCT 59.370 47.619 0.00 0.00 0.00 4.58
2701 5884 2.113860 TGTGCCTCATCTTGTTAGCC 57.886 50.000 0.00 0.00 0.00 3.93
2702 5885 4.156556 TCAAATGTGCCTCATCTTGTTAGC 59.843 41.667 0.00 0.00 35.48 3.09
2703 5886 5.181811 TGTCAAATGTGCCTCATCTTGTTAG 59.818 40.000 0.00 0.00 35.48 2.34
2704 5887 5.048782 GTGTCAAATGTGCCTCATCTTGTTA 60.049 40.000 0.00 0.00 35.48 2.41
2705 5888 3.890756 TGTCAAATGTGCCTCATCTTGTT 59.109 39.130 0.00 0.00 35.48 2.83
2706 5889 3.254166 GTGTCAAATGTGCCTCATCTTGT 59.746 43.478 0.00 0.00 35.48 3.16
2707 5890 3.366679 GGTGTCAAATGTGCCTCATCTTG 60.367 47.826 0.00 0.00 35.48 3.02
2708 5891 2.821969 GGTGTCAAATGTGCCTCATCTT 59.178 45.455 0.00 0.00 35.48 2.40
2709 5892 2.224843 TGGTGTCAAATGTGCCTCATCT 60.225 45.455 0.00 0.00 35.48 2.90
2710 5893 2.161855 TGGTGTCAAATGTGCCTCATC 58.838 47.619 0.00 0.00 35.48 2.92
2711 5894 2.291209 TGGTGTCAAATGTGCCTCAT 57.709 45.000 0.00 0.00 38.57 2.90
2712 5895 2.064434 TTGGTGTCAAATGTGCCTCA 57.936 45.000 0.00 0.00 0.00 3.86
2713 5896 3.123050 GTTTTGGTGTCAAATGTGCCTC 58.877 45.455 0.00 0.00 41.84 4.70
2714 5897 2.158971 GGTTTTGGTGTCAAATGTGCCT 60.159 45.455 0.00 0.00 41.84 4.75
2715 5898 2.209273 GGTTTTGGTGTCAAATGTGCC 58.791 47.619 0.00 0.00 41.84 5.01
2716 5899 1.857837 CGGTTTTGGTGTCAAATGTGC 59.142 47.619 0.00 0.00 41.84 4.57
2717 5900 2.468831 CCGGTTTTGGTGTCAAATGTG 58.531 47.619 0.00 0.00 41.84 3.21
2718 5901 1.202475 GCCGGTTTTGGTGTCAAATGT 60.202 47.619 1.90 0.00 41.84 2.71
2719 5902 1.202463 TGCCGGTTTTGGTGTCAAATG 60.202 47.619 1.90 0.00 41.84 2.32
2720 5903 1.115467 TGCCGGTTTTGGTGTCAAAT 58.885 45.000 1.90 0.00 41.84 2.32
2721 5904 0.173708 GTGCCGGTTTTGGTGTCAAA 59.826 50.000 1.90 0.00 40.71 2.69
2722 5905 0.965866 TGTGCCGGTTTTGGTGTCAA 60.966 50.000 1.90 0.00 0.00 3.18
2723 5906 0.753479 ATGTGCCGGTTTTGGTGTCA 60.753 50.000 1.90 0.00 0.00 3.58
2724 5907 0.387565 AATGTGCCGGTTTTGGTGTC 59.612 50.000 1.90 0.00 0.00 3.67
2725 5908 0.827368 AAATGTGCCGGTTTTGGTGT 59.173 45.000 1.90 0.00 0.00 4.16
2726 5909 1.946745 AAAATGTGCCGGTTTTGGTG 58.053 45.000 1.90 0.00 0.00 4.17
2727 5910 2.700722 AAAAATGTGCCGGTTTTGGT 57.299 40.000 1.90 0.00 0.00 3.67
2884 6067 7.646446 AAATCGGTTTAAAATGTTAGCAACC 57.354 32.000 0.00 0.62 31.03 3.77
2918 6101 7.445034 AACGAATTGTTTAGGAGTGGGTCCA 62.445 44.000 0.00 0.00 42.89 4.02
2938 6121 4.391216 TCAAACAAAACGGTCAACTAACGA 59.609 37.500 0.00 0.00 0.00 3.85
3023 6206 4.788925 TGGGAAAGAAAGAGACAAGGAA 57.211 40.909 0.00 0.00 0.00 3.36
3156 6339 3.180282 CCTTTTCTCCTGGGGGCA 58.820 61.111 0.00 0.00 0.00 5.36
3159 6344 2.044946 CGGCCTTTTCTCCTGGGG 60.045 66.667 0.00 0.00 0.00 4.96
3166 6351 2.046604 GGTACGGCGGCCTTTTCT 60.047 61.111 18.34 0.00 0.00 2.52
3168 6353 3.912745 CTGGGTACGGCGGCCTTTT 62.913 63.158 18.34 3.60 0.00 2.27
3178 6363 2.125106 GCCTTGCTCCTGGGTACG 60.125 66.667 0.00 0.00 0.00 3.67
3180 6365 3.399181 CGGCCTTGCTCCTGGGTA 61.399 66.667 0.00 0.00 0.00 3.69
3239 6425 4.090588 TTTCCCTAGGGCGTGGCG 62.091 66.667 24.42 0.00 34.68 5.69
3240 6426 2.124695 CTTTCCCTAGGGCGTGGC 60.125 66.667 24.42 0.00 34.68 5.01
3241 6427 2.590092 CCTTTCCCTAGGGCGTGG 59.410 66.667 24.42 18.96 34.68 4.94
3247 6433 0.183731 GTGATGGCCCTTTCCCTAGG 59.816 60.000 0.06 0.06 34.92 3.02
3248 6434 0.179045 CGTGATGGCCCTTTCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
3249 6435 1.912220 CGTGATGGCCCTTTCCCTA 59.088 57.895 0.00 0.00 0.00 3.53
3250 6436 2.677228 CGTGATGGCCCTTTCCCT 59.323 61.111 0.00 0.00 0.00 4.20
3251 6437 3.140814 GCGTGATGGCCCTTTCCC 61.141 66.667 0.00 0.00 0.00 3.97
3259 6445 3.134127 GTTCCTGGGCGTGATGGC 61.134 66.667 0.00 0.00 43.88 4.40
3260 6446 1.303236 TTGTTCCTGGGCGTGATGG 60.303 57.895 0.00 0.00 0.00 3.51
3261 6447 1.308069 CCTTGTTCCTGGGCGTGATG 61.308 60.000 0.00 0.00 0.00 3.07
3262 6448 1.002134 CCTTGTTCCTGGGCGTGAT 60.002 57.895 0.00 0.00 0.00 3.06
3263 6449 2.429930 CCTTGTTCCTGGGCGTGA 59.570 61.111 0.00 0.00 0.00 4.35
3264 6450 3.365265 GCCTTGTTCCTGGGCGTG 61.365 66.667 0.00 0.00 36.37 5.34
3265 6451 4.660938 GGCCTTGTTCCTGGGCGT 62.661 66.667 0.00 0.00 46.10 5.68
3267 6453 3.860930 TTCGGCCTTGTTCCTGGGC 62.861 63.158 0.00 0.00 44.59 5.36
3268 6454 1.971695 GTTCGGCCTTGTTCCTGGG 60.972 63.158 0.00 0.00 0.00 4.45
3269 6455 2.325082 CGTTCGGCCTTGTTCCTGG 61.325 63.158 0.00 0.00 0.00 4.45
3270 6456 2.966309 GCGTTCGGCCTTGTTCCTG 61.966 63.158 0.00 0.00 34.80 3.86
3271 6457 2.668550 GCGTTCGGCCTTGTTCCT 60.669 61.111 0.00 0.00 34.80 3.36
3298 6484 2.044551 GGCCTTTGCTCCTGGGAG 60.045 66.667 11.97 11.97 44.56 4.30
3299 6485 4.033776 CGGCCTTTGCTCCTGGGA 62.034 66.667 0.00 0.00 37.74 4.37
3301 6487 4.729918 AGCGGCCTTTGCTCCTGG 62.730 66.667 0.00 0.00 38.62 4.45
3302 6488 3.437795 CAGCGGCCTTTGCTCCTG 61.438 66.667 0.00 0.00 41.72 3.86
3385 6610 4.069232 CGCTTCTCCTGGGCGTGA 62.069 66.667 6.86 0.00 43.28 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.