Multiple sequence alignment - TraesCS1B01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G082500 chr1B 100.000 4757 0 0 1 4757 66125643 66120887 0.000000e+00 8785.0
1 TraesCS1B01G082500 chr1B 88.766 1905 136 36 621 2480 66376755 66374884 0.000000e+00 2261.0
2 TraesCS1B01G082500 chr1B 91.115 1193 63 26 621 1791 66501102 66499931 0.000000e+00 1576.0
3 TraesCS1B01G082500 chr1B 90.070 574 49 5 1477 2049 66499929 66499363 0.000000e+00 737.0
4 TraesCS1B01G082500 chr1B 87.912 637 59 12 3404 4034 66365982 66365358 0.000000e+00 734.0
5 TraesCS1B01G082500 chr1B 87.809 607 56 12 3434 4034 66488785 66488191 0.000000e+00 695.0
6 TraesCS1B01G082500 chr1B 83.333 438 58 9 2936 3360 66489416 66488981 1.610000e-104 390.0
7 TraesCS1B01G082500 chr1B 88.014 292 29 1 2189 2480 66499248 66498963 1.640000e-89 340.0
8 TraesCS1B01G082500 chr1B 85.714 266 32 3 2472 2734 66489681 66489419 4.690000e-70 276.0
9 TraesCS1B01G082500 chr1B 85.338 266 33 3 2472 2734 66366684 66366422 2.180000e-68 270.0
10 TraesCS1B01G082500 chr1B 78.108 370 40 22 131 465 66501859 66501496 3.760000e-46 196.0
11 TraesCS1B01G082500 chr1B 81.818 242 21 14 240 465 66377383 66377149 1.050000e-41 182.0
12 TraesCS1B01G082500 chr1B 98.851 87 1 0 4134 4220 22881880 22881966 6.370000e-34 156.0
13 TraesCS1B01G082500 chr1B 89.394 66 5 2 2053 2117 66499336 66499272 1.100000e-11 82.4
14 TraesCS1B01G082500 chr1D 93.947 1685 65 14 134 1789 46398472 46396796 0.000000e+00 2512.0
15 TraesCS1B01G082500 chr1D 94.283 997 44 7 1481 2473 46396944 46395957 0.000000e+00 1513.0
16 TraesCS1B01G082500 chr1D 90.257 1088 63 20 621 1686 46450979 46449913 0.000000e+00 1382.0
17 TraesCS1B01G082500 chr1D 92.273 893 47 7 2472 3360 46395078 46394204 0.000000e+00 1247.0
18 TraesCS1B01G082500 chr1D 88.080 948 75 14 1556 2480 46449547 46448615 0.000000e+00 1090.0
19 TraesCS1B01G082500 chr1D 95.586 657 28 1 3399 4055 46394206 46393551 0.000000e+00 1051.0
20 TraesCS1B01G082500 chr1D 89.394 594 52 5 1804 2394 46462567 46461982 0.000000e+00 737.0
21 TraesCS1B01G082500 chr1D 86.321 636 57 15 3404 4034 46440005 46439395 0.000000e+00 665.0
22 TraesCS1B01G082500 chr1D 86.680 518 54 9 994 1506 46464091 46463584 1.160000e-155 560.0
23 TraesCS1B01G082500 chr1D 83.790 438 56 9 2936 3360 46440446 46440011 7.420000e-108 401.0
24 TraesCS1B01G082500 chr1D 87.662 308 26 7 4356 4660 46392169 46391871 9.800000e-92 348.0
25 TraesCS1B01G082500 chr1D 86.090 266 31 3 2472 2734 46440711 46440449 1.010000e-71 281.0
26 TraesCS1B01G082500 chr1D 81.924 343 24 19 155 465 46451432 46451096 6.110000e-64 255.0
27 TraesCS1B01G082500 chr1D 95.327 107 4 1 4652 4757 46390989 46390883 8.190000e-38 169.0
28 TraesCS1B01G082500 chr1A 89.192 1906 131 36 621 2480 46202818 46200942 0.000000e+00 2309.0
29 TraesCS1B01G082500 chr1A 94.874 1229 47 6 572 1791 45858457 45857236 0.000000e+00 1906.0
30 TraesCS1B01G082500 chr1A 90.596 1191 74 19 621 1791 46296777 46295605 0.000000e+00 1544.0
31 TraesCS1B01G082500 chr1A 94.483 997 41 8 1481 2473 45857386 45856400 0.000000e+00 1524.0
32 TraesCS1B01G082500 chr1A 94.613 891 41 4 2472 3360 45855496 45854611 0.000000e+00 1373.0
33 TraesCS1B01G082500 chr1A 93.151 730 31 6 3399 4128 45854613 45853903 0.000000e+00 1053.0
34 TraesCS1B01G082500 chr1A 87.805 861 64 14 1645 2480 46295091 46294247 0.000000e+00 970.0
35 TraesCS1B01G082500 chr1A 89.057 594 52 5 1804 2394 46309101 46308518 0.000000e+00 725.0
36 TraesCS1B01G082500 chr1A 88.889 594 53 6 1804 2394 46256794 46256211 0.000000e+00 719.0
37 TraesCS1B01G082500 chr1A 87.076 619 57 10 3396 4003 46279426 46278820 0.000000e+00 678.0
38 TraesCS1B01G082500 chr1A 85.911 653 65 13 3396 4034 46241115 46240476 0.000000e+00 671.0
39 TraesCS1B01G082500 chr1A 85.891 645 64 14 3396 4026 46190242 46189611 0.000000e+00 662.0
40 TraesCS1B01G082500 chr1A 85.810 599 67 12 997 1589 46310430 46309844 1.880000e-173 619.0
41 TraesCS1B01G082500 chr1A 94.970 338 12 2 131 464 45859692 45859356 4.220000e-145 525.0
42 TraesCS1B01G082500 chr1A 82.648 438 61 11 2936 3360 46241548 46241113 1.620000e-99 374.0
43 TraesCS1B01G082500 chr1A 81.963 438 64 10 2936 3360 46190675 46190240 1.630000e-94 357.0
44 TraesCS1B01G082500 chr1A 81.735 438 65 10 2936 3360 46279859 46279424 7.570000e-93 351.0
45 TraesCS1B01G082500 chr1A 88.983 236 12 3 4535 4757 45853496 45853262 3.630000e-71 279.0
46 TraesCS1B01G082500 chr1A 79.508 366 38 15 131 465 46203305 46202946 4.790000e-55 226.0
47 TraesCS1B01G082500 chr1A 79.646 339 32 15 158 465 46297237 46296905 4.820000e-50 209.0
48 TraesCS1B01G082500 chr1A 91.150 113 5 3 470 578 45858985 45858874 1.070000e-31 148.0
49 TraesCS1B01G082500 chr5A 94.231 104 5 1 4127 4229 413843515 413843412 1.770000e-34 158.0
50 TraesCS1B01G082500 chr5A 94.000 100 4 2 4132 4229 428189441 428189342 2.970000e-32 150.0
51 TraesCS1B01G082500 chr5A 81.679 131 21 3 1 130 474143827 474143955 6.510000e-19 106.0
52 TraesCS1B01G082500 chr5A 81.679 131 21 3 1 130 474257273 474257145 6.510000e-19 106.0
53 TraesCS1B01G082500 chr5A 80.153 131 22 3 3 131 701193757 701193629 1.410000e-15 95.3
54 TraesCS1B01G082500 chr2B 97.753 89 2 0 4135 4223 744873175 744873087 2.290000e-33 154.0
55 TraesCS1B01G082500 chr2B 95.745 94 4 0 4132 4225 554296037 554296130 8.250000e-33 152.0
56 TraesCS1B01G082500 chr2B 87.755 49 2 3 3362 3406 371159922 371159874 2.000000e-03 54.7
57 TraesCS1B01G082500 chr2B 100.000 28 0 0 3362 3389 108682583 108682610 9.000000e-03 52.8
58 TraesCS1B01G082500 chr2A 97.753 89 2 0 4135 4223 41474248 41474160 2.290000e-33 154.0
59 TraesCS1B01G082500 chr2A 100.000 28 0 0 3362 3389 350734442 350734469 9.000000e-03 52.8
60 TraesCS1B01G082500 chr7A 97.727 88 2 0 4135 4222 461522669 461522582 8.250000e-33 152.0
61 TraesCS1B01G082500 chr7A 100.000 28 0 0 3362 3389 1107075 1107048 9.000000e-03 52.8
62 TraesCS1B01G082500 chr7B 95.699 93 4 0 4133 4225 671284327 671284235 2.970000e-32 150.0
63 TraesCS1B01G082500 chr7B 86.364 132 16 2 1 130 744032228 744032097 4.960000e-30 143.0
64 TraesCS1B01G082500 chr7B 83.077 130 20 2 1 128 552552630 552552759 3.010000e-22 117.0
65 TraesCS1B01G082500 chr7B 97.222 36 1 0 3362 3397 725608322 725608287 1.430000e-05 62.1
66 TraesCS1B01G082500 chr7B 100.000 28 0 0 3362 3389 485428352 485428379 9.000000e-03 52.8
67 TraesCS1B01G082500 chr7D 93.814 97 6 0 4127 4223 264750132 264750228 3.840000e-31 147.0
68 TraesCS1B01G082500 chr7D 84.848 132 18 2 1 130 625209514 625209645 1.070000e-26 132.0
69 TraesCS1B01G082500 chr7D 85.263 95 14 0 13 107 327376592 327376498 1.090000e-16 99.0
70 TraesCS1B01G082500 chr7D 94.286 35 2 0 3362 3396 320265401 320265435 2.000000e-03 54.7
71 TraesCS1B01G082500 chr6D 85.047 107 16 0 1 107 34525977 34526083 5.030000e-20 110.0
72 TraesCS1B01G082500 chr6B 84.466 103 14 2 5 107 151910220 151910320 3.030000e-17 100.0
73 TraesCS1B01G082500 chrUn 97.222 36 1 0 3362 3397 409216813 409216848 1.430000e-05 62.1
74 TraesCS1B01G082500 chr2D 92.308 39 2 1 3362 3399 21617048 21617086 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G082500 chr1B 66120887 66125643 4756 True 8785.000000 8785 100.000000 1 4757 1 chr1B.!!$R1 4756
1 TraesCS1B01G082500 chr1B 66374884 66377383 2499 True 1221.500000 2261 85.292000 240 2480 2 chr1B.!!$R3 2240
2 TraesCS1B01G082500 chr1B 66498963 66501859 2896 True 586.280000 1576 87.340200 131 2480 5 chr1B.!!$R5 2349
3 TraesCS1B01G082500 chr1B 66365358 66366684 1326 True 502.000000 734 86.625000 2472 4034 2 chr1B.!!$R2 1562
4 TraesCS1B01G082500 chr1B 66488191 66489681 1490 True 453.666667 695 85.618667 2472 4034 3 chr1B.!!$R4 1562
5 TraesCS1B01G082500 chr1D 46390883 46398472 7589 True 1140.000000 2512 93.179667 134 4757 6 chr1D.!!$R1 4623
6 TraesCS1B01G082500 chr1D 46448615 46451432 2817 True 909.000000 1382 86.753667 155 2480 3 chr1D.!!$R3 2325
7 TraesCS1B01G082500 chr1D 46461982 46464091 2109 True 648.500000 737 88.037000 994 2394 2 chr1D.!!$R4 1400
8 TraesCS1B01G082500 chr1D 46439395 46440711 1316 True 449.000000 665 85.400333 2472 4034 3 chr1D.!!$R2 1562
9 TraesCS1B01G082500 chr1A 46200942 46203305 2363 True 1267.500000 2309 84.350000 131 2480 2 chr1A.!!$R4 2349
10 TraesCS1B01G082500 chr1A 45853262 45859692 6430 True 972.571429 1906 93.174857 131 4757 7 chr1A.!!$R2 4626
11 TraesCS1B01G082500 chr1A 46294247 46297237 2990 True 907.666667 1544 86.015667 158 2480 3 chr1A.!!$R7 2322
12 TraesCS1B01G082500 chr1A 46256211 46256794 583 True 719.000000 719 88.889000 1804 2394 1 chr1A.!!$R1 590
13 TraesCS1B01G082500 chr1A 46308518 46310430 1912 True 672.000000 725 87.433500 997 2394 2 chr1A.!!$R8 1397
14 TraesCS1B01G082500 chr1A 46240476 46241548 1072 True 522.500000 671 84.279500 2936 4034 2 chr1A.!!$R5 1098
15 TraesCS1B01G082500 chr1A 46278820 46279859 1039 True 514.500000 678 84.405500 2936 4003 2 chr1A.!!$R6 1067
16 TraesCS1B01G082500 chr1A 46189611 46190675 1064 True 509.500000 662 83.927000 2936 4026 2 chr1A.!!$R3 1090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.373716 CAAGACCGACCGCATTAAGC 59.626 55.0 0.00 0.00 40.87 3.09 F
1233 2298 0.109781 TTCGCGCAATTGCTTCTTCC 60.110 50.0 26.86 8.11 39.32 3.46 F
1489 2558 0.679505 TGCAAGCTCGGTAAGACTGT 59.320 50.0 0.00 0.00 0.00 3.55 F
2562 6809 0.813610 TCGTAAATGGATGGCGCAGG 60.814 55.0 10.83 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 5278 1.338960 TGAGCATTCTCCATGACGCAA 60.339 47.619 0.00 0.0 38.58 4.85 R
3226 7485 0.109504 CACGGCGGTTTTTATGGTGG 60.110 55.000 13.24 0.0 0.00 4.61 R
3360 7620 0.327095 TAACCCCCAGCCTCTGCATA 60.327 55.000 0.00 0.0 41.13 3.14 R
4286 8956 0.028902 CGATCGACGATGGTAGTGCA 59.971 55.000 16.49 0.0 45.77 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.991051 CGTCCCGCATATCCCGCT 61.991 66.667 0.00 0.00 0.00 5.52
19 20 2.048127 GTCCCGCATATCCCGCTC 60.048 66.667 0.00 0.00 0.00 5.03
20 21 3.680786 TCCCGCATATCCCGCTCG 61.681 66.667 0.00 0.00 0.00 5.03
22 23 4.662961 CCGCATATCCCGCTCGCA 62.663 66.667 0.00 0.00 0.00 5.10
23 24 3.406361 CGCATATCCCGCTCGCAC 61.406 66.667 0.00 0.00 0.00 5.34
24 25 3.044305 GCATATCCCGCTCGCACC 61.044 66.667 0.00 0.00 0.00 5.01
25 26 2.357517 CATATCCCGCTCGCACCC 60.358 66.667 0.00 0.00 0.00 4.61
26 27 3.991051 ATATCCCGCTCGCACCCG 61.991 66.667 0.00 0.00 0.00 5.28
40 41 4.907034 CCCGATGCGTCCGACGAG 62.907 72.222 24.78 11.30 46.05 4.18
41 42 4.175489 CCGATGCGTCCGACGAGT 62.175 66.667 24.78 11.38 46.05 4.18
42 43 2.648102 CGATGCGTCCGACGAGTC 60.648 66.667 24.78 17.93 46.05 3.36
43 44 2.278013 GATGCGTCCGACGAGTCC 60.278 66.667 24.78 7.19 46.05 3.85
44 45 4.175489 ATGCGTCCGACGAGTCCG 62.175 66.667 24.78 0.00 46.05 4.79
46 47 4.808238 GCGTCCGACGAGTCCGAC 62.808 72.222 24.78 12.49 46.05 4.79
47 48 4.157958 CGTCCGACGAGTCCGACC 62.158 72.222 16.03 3.17 46.05 4.79
48 49 4.157958 GTCCGACGAGTCCGACCG 62.158 72.222 11.76 7.58 39.50 4.79
52 53 4.773117 GACGAGTCCGACCGCACC 62.773 72.222 8.70 0.00 39.50 5.01
54 55 4.778415 CGAGTCCGACCGCACCAG 62.778 72.222 0.00 0.00 38.22 4.00
55 56 3.681835 GAGTCCGACCGCACCAGT 61.682 66.667 0.00 0.00 0.00 4.00
56 57 3.916392 GAGTCCGACCGCACCAGTG 62.916 68.421 0.00 0.00 0.00 3.66
66 67 3.022287 CACCAGTGCGTCCAACAC 58.978 61.111 0.00 0.00 38.35 3.32
74 75 2.107343 CGTCCAACACGTCCCACA 59.893 61.111 0.00 0.00 44.07 4.17
75 76 2.241880 CGTCCAACACGTCCCACAC 61.242 63.158 0.00 0.00 44.07 3.82
94 95 4.920112 CACCCGACGCACCCAACA 62.920 66.667 0.00 0.00 0.00 3.33
95 96 4.178169 ACCCGACGCACCCAACAA 62.178 61.111 0.00 0.00 0.00 2.83
96 97 3.353836 CCCGACGCACCCAACAAG 61.354 66.667 0.00 0.00 0.00 3.16
97 98 2.280524 CCGACGCACCCAACAAGA 60.281 61.111 0.00 0.00 0.00 3.02
98 99 2.604174 CCGACGCACCCAACAAGAC 61.604 63.158 0.00 0.00 0.00 3.01
99 100 2.604174 CGACGCACCCAACAAGACC 61.604 63.158 0.00 0.00 0.00 3.85
100 101 2.590575 ACGCACCCAACAAGACCG 60.591 61.111 0.00 0.00 0.00 4.79
101 102 2.280524 CGCACCCAACAAGACCGA 60.281 61.111 0.00 0.00 0.00 4.69
102 103 2.604174 CGCACCCAACAAGACCGAC 61.604 63.158 0.00 0.00 0.00 4.79
103 104 2.258726 GCACCCAACAAGACCGACC 61.259 63.158 0.00 0.00 0.00 4.79
104 105 1.959226 CACCCAACAAGACCGACCG 60.959 63.158 0.00 0.00 0.00 4.79
105 106 3.047877 CCCAACAAGACCGACCGC 61.048 66.667 0.00 0.00 0.00 5.68
106 107 2.280524 CCAACAAGACCGACCGCA 60.281 61.111 0.00 0.00 0.00 5.69
107 108 1.671054 CCAACAAGACCGACCGCAT 60.671 57.895 0.00 0.00 0.00 4.73
108 109 1.234615 CCAACAAGACCGACCGCATT 61.235 55.000 0.00 0.00 0.00 3.56
109 110 1.434555 CAACAAGACCGACCGCATTA 58.565 50.000 0.00 0.00 0.00 1.90
110 111 1.801771 CAACAAGACCGACCGCATTAA 59.198 47.619 0.00 0.00 0.00 1.40
111 112 1.722011 ACAAGACCGACCGCATTAAG 58.278 50.000 0.00 0.00 0.00 1.85
112 113 0.373716 CAAGACCGACCGCATTAAGC 59.626 55.000 0.00 0.00 40.87 3.09
113 114 0.743345 AAGACCGACCGCATTAAGCC 60.743 55.000 0.00 0.00 41.38 4.35
114 115 2.510691 ACCGACCGCATTAAGCCG 60.511 61.111 0.00 0.00 41.38 5.52
115 116 2.510691 CCGACCGCATTAAGCCGT 60.511 61.111 0.00 0.00 41.38 5.68
116 117 2.701006 CGACCGCATTAAGCCGTG 59.299 61.111 0.00 0.00 41.38 4.94
117 118 2.808958 CGACCGCATTAAGCCGTGG 61.809 63.158 0.00 0.00 41.38 4.94
118 119 3.108357 GACCGCATTAAGCCGTGGC 62.108 63.158 1.67 1.67 41.38 5.01
129 130 2.562125 GCCGTGGCTTATTCCAACA 58.438 52.632 2.98 0.00 37.96 3.33
200 202 1.084289 CTTTACGCCTAGCCAACCAC 58.916 55.000 0.00 0.00 0.00 4.16
227 229 4.142249 GCCCATAAAATAACGAGCACCTTT 60.142 41.667 0.00 0.00 0.00 3.11
244 268 4.633565 CACCTTTATGAACTCTTCAGCTCC 59.366 45.833 0.00 0.00 43.98 4.70
274 298 1.911766 CCCGTGGGTCACTAGTGGT 60.912 63.158 22.48 0.00 31.34 4.16
281 305 3.056749 GTGGGTCACTAGTGGTACTTCTG 60.057 52.174 22.48 0.00 0.00 3.02
385 423 1.277557 GAGCCTTATCCATCTCCGCAT 59.722 52.381 0.00 0.00 0.00 4.73
386 424 1.002888 AGCCTTATCCATCTCCGCATG 59.997 52.381 0.00 0.00 0.00 4.06
387 425 1.446907 CCTTATCCATCTCCGCATGC 58.553 55.000 7.91 7.91 0.00 4.06
388 426 1.271001 CCTTATCCATCTCCGCATGCA 60.271 52.381 19.57 0.00 0.00 3.96
433 475 6.230472 CGATTAGATGGGATTGATGGTTGTA 58.770 40.000 0.00 0.00 0.00 2.41
504 922 9.323985 TCATTTATTATTTGCCAACATAAAGCC 57.676 29.630 4.16 0.00 0.00 4.35
505 923 8.558700 CATTTATTATTTGCCAACATAAAGCCC 58.441 33.333 4.16 0.00 0.00 5.19
639 1647 6.589139 ACAGAGTACATAGGAACGCTTTAAAC 59.411 38.462 0.00 0.00 0.00 2.01
714 1734 6.369065 AGTCTCGTGATAAACTTGGTGATTTC 59.631 38.462 0.00 0.00 0.00 2.17
735 1766 7.707624 TTTCGTAGAGATTACCAGAAAGGTA 57.292 36.000 0.00 0.00 45.23 3.08
758 1789 4.646960 ACGCATGCAAAAGAAACAAAAAC 58.353 34.783 19.57 0.00 0.00 2.43
766 1797 5.512434 GCAAAAGAAACAAAAACCAGCAATG 59.488 36.000 0.00 0.00 0.00 2.82
767 1798 4.880886 AAGAAACAAAAACCAGCAATGC 57.119 36.364 0.00 0.00 0.00 3.56
878 1912 6.252995 ACTCATACTTTGGGAGGCATTAAAA 58.747 36.000 0.00 0.00 32.98 1.52
945 1979 1.839424 AAGCAAGCCCACATACCTTC 58.161 50.000 0.00 0.00 0.00 3.46
999 2064 4.116238 GCAACTCTTCTATACACTCCTGC 58.884 47.826 0.00 0.00 0.00 4.85
1095 2160 3.375922 TGTTGTTCTTTCGTTTGGTCCTC 59.624 43.478 0.00 0.00 0.00 3.71
1226 2291 2.092524 ACAATCATTTTCGCGCAATTGC 59.907 40.909 20.76 20.76 37.78 3.56
1233 2298 0.109781 TTCGCGCAATTGCTTCTTCC 60.110 50.000 26.86 8.11 39.32 3.46
1284 2349 1.813513 CGTTTGATGGTTCAGAGGCT 58.186 50.000 0.00 0.00 32.27 4.58
1314 2379 8.816894 TCTATACCAAGAAGTGACTTTCAGAAT 58.183 33.333 0.00 0.00 0.00 2.40
1398 2463 7.646548 TCTTCGAGAAAGGATAGAGATGAAA 57.353 36.000 0.00 0.00 35.54 2.69
1418 2483 7.307493 TGAAATTTGTCCGTAATCAGATGAG 57.693 36.000 0.00 0.00 0.00 2.90
1489 2558 0.679505 TGCAAGCTCGGTAAGACTGT 59.320 50.000 0.00 0.00 0.00 3.55
1562 2820 9.620259 TTTTACCCTTTTGTGATTTGCTTTATT 57.380 25.926 0.00 0.00 0.00 1.40
1792 5076 6.405278 TCGCATGAACAGATTCCTAATAGA 57.595 37.500 0.00 0.00 33.49 1.98
1974 5278 9.643693 GAAATATCCATGTTCAAACAAGTCAAT 57.356 29.630 0.00 0.00 43.03 2.57
2003 5307 4.090761 TGGAGAATGCTCAAGTTCAAGT 57.909 40.909 2.29 0.00 43.14 3.16
2127 5452 3.618594 TGATGCAGTAAGAAAGTCATCGC 59.381 43.478 0.00 0.00 34.64 4.58
2167 5493 9.585099 GTGCATGTCTATTCATTATTTTCCAAA 57.415 29.630 0.00 0.00 0.00 3.28
2266 5592 5.979517 CAGATCACGCAACAACTATCTGATA 59.020 40.000 0.00 0.00 41.73 2.15
2267 5593 6.644181 CAGATCACGCAACAACTATCTGATAT 59.356 38.462 0.00 0.00 41.73 1.63
2268 5594 7.170489 CAGATCACGCAACAACTATCTGATATT 59.830 37.037 0.00 0.00 41.73 1.28
2269 5595 6.828502 TCACGCAACAACTATCTGATATTC 57.171 37.500 0.00 0.00 0.00 1.75
2270 5596 5.753438 TCACGCAACAACTATCTGATATTCC 59.247 40.000 0.00 0.00 0.00 3.01
2271 5597 5.523552 CACGCAACAACTATCTGATATTCCA 59.476 40.000 0.00 0.00 0.00 3.53
2468 5796 3.954904 ACAGTGTAATATCGGAGTCAGCT 59.045 43.478 0.00 0.00 0.00 4.24
2470 5798 4.036852 CAGTGTAATATCGGAGTCAGCTGA 59.963 45.833 13.74 13.74 0.00 4.26
2561 6808 1.013596 TTCGTAAATGGATGGCGCAG 58.986 50.000 10.83 0.00 0.00 5.18
2562 6809 0.813610 TCGTAAATGGATGGCGCAGG 60.814 55.000 10.83 0.00 0.00 4.85
2635 6882 6.010219 AGTTTTACCATGTCCAATAGTGCTT 58.990 36.000 0.00 0.00 0.00 3.91
2670 6917 7.069344 TCATAGAAGAGGTCTGTATCAATGGA 58.931 38.462 0.00 0.00 37.12 3.41
2765 7012 6.619329 AAGCTCTCCAGAATTTCTCTAGTT 57.381 37.500 0.00 0.00 31.12 2.24
2766 7013 6.220726 AGCTCTCCAGAATTTCTCTAGTTC 57.779 41.667 0.00 0.00 31.12 3.01
2767 7014 5.719085 AGCTCTCCAGAATTTCTCTAGTTCA 59.281 40.000 0.00 0.00 31.12 3.18
2768 7015 6.212388 AGCTCTCCAGAATTTCTCTAGTTCAA 59.788 38.462 0.00 0.00 31.12 2.69
2826 7073 1.347707 ACGAGCTCCCACTTGATTTGA 59.652 47.619 8.47 0.00 0.00 2.69
2866 7113 3.692791 GTCAGACTTGACCCACAAAAC 57.307 47.619 0.00 0.00 46.47 2.43
2930 7177 3.304726 GCAAAACCAGAGGAGTAAAGTGC 60.305 47.826 0.00 0.00 0.00 4.40
2934 7181 2.492484 ACCAGAGGAGTAAAGTGCTACG 59.508 50.000 0.00 0.00 0.00 3.51
2990 7238 2.089201 CTCTCTGCCATGACATGCAAA 58.911 47.619 10.10 0.00 36.98 3.68
3024 7272 7.036996 ACATTTTCACATGATGTTGTACACA 57.963 32.000 0.00 0.00 40.71 3.72
3091 7339 2.562298 GGGAATTGAGTGCAAATGTCCA 59.438 45.455 0.00 0.00 37.59 4.02
3168 7419 4.959596 AAGATCTTGTGCACATTGCTAG 57.040 40.909 22.39 14.75 45.31 3.42
3200 7459 6.570378 CGGTAACCTCATCAAAGCTTGAAAAT 60.570 38.462 0.00 0.00 43.95 1.82
3365 7625 6.691754 AACGTGGTCAATTTGATATATGCA 57.308 33.333 1.78 0.00 0.00 3.96
3366 7626 6.304356 ACGTGGTCAATTTGATATATGCAG 57.696 37.500 1.78 0.00 0.00 4.41
3367 7627 6.054941 ACGTGGTCAATTTGATATATGCAGA 58.945 36.000 1.78 0.00 0.00 4.26
3368 7628 6.203530 ACGTGGTCAATTTGATATATGCAGAG 59.796 38.462 1.78 0.00 0.00 3.35
3369 7629 6.347969 CGTGGTCAATTTGATATATGCAGAGG 60.348 42.308 1.78 0.00 0.00 3.69
3370 7630 5.474532 TGGTCAATTTGATATATGCAGAGGC 59.525 40.000 1.78 0.00 41.68 4.70
3371 7631 5.709164 GGTCAATTTGATATATGCAGAGGCT 59.291 40.000 1.78 0.00 41.91 4.58
3372 7632 6.349115 GGTCAATTTGATATATGCAGAGGCTG 60.349 42.308 1.78 0.00 41.91 4.85
3373 7633 5.708697 TCAATTTGATATATGCAGAGGCTGG 59.291 40.000 0.00 0.00 41.91 4.85
3374 7634 3.708403 TTGATATATGCAGAGGCTGGG 57.292 47.619 0.00 0.00 41.91 4.45
3375 7635 1.911357 TGATATATGCAGAGGCTGGGG 59.089 52.381 0.00 0.00 41.91 4.96
3376 7636 1.211457 GATATATGCAGAGGCTGGGGG 59.789 57.143 0.00 0.00 41.91 5.40
3377 7637 0.104462 TATATGCAGAGGCTGGGGGT 60.104 55.000 0.00 0.00 41.91 4.95
3378 7638 0.995675 ATATGCAGAGGCTGGGGGTT 60.996 55.000 0.00 0.00 41.91 4.11
3379 7639 0.327095 TATGCAGAGGCTGGGGGTTA 60.327 55.000 0.00 0.00 41.91 2.85
3380 7640 0.995675 ATGCAGAGGCTGGGGGTTAT 60.996 55.000 0.00 0.00 41.91 1.89
3381 7641 1.149401 GCAGAGGCTGGGGGTTATC 59.851 63.158 0.00 0.00 36.96 1.75
3382 7642 1.839894 CAGAGGCTGGGGGTTATCC 59.160 63.158 0.00 0.00 0.00 2.59
3383 7643 0.695803 CAGAGGCTGGGGGTTATCCT 60.696 60.000 0.00 0.00 35.33 3.24
3384 7644 0.400670 AGAGGCTGGGGGTTATCCTC 60.401 60.000 0.00 0.00 42.68 3.71
3444 7864 9.975218 AAGACAGGAAAGGCTATAATAAAGAAA 57.025 29.630 0.00 0.00 0.00 2.52
3745 8171 6.145535 CAGTATGTGCCAAAGAAGAAGAAAC 58.854 40.000 0.00 0.00 0.00 2.78
3932 8368 8.463930 TTTATGGACATTGTTCTGAACTTCTT 57.536 30.769 20.18 3.93 0.00 2.52
3973 8409 6.483307 TCTGAGGACTCAAATTTGTACTTGTG 59.517 38.462 17.47 4.54 39.39 3.33
4013 8451 8.609176 CCATATTATTGGTACGTATAATGGTGC 58.391 37.037 15.80 0.00 32.83 5.01
4019 8457 7.718272 TTGGTACGTATAATGGTGCTAAATC 57.282 36.000 0.00 0.00 0.00 2.17
4030 8468 6.619801 ATGGTGCTAAATCTTAAATCCGTC 57.380 37.500 0.00 0.00 0.00 4.79
4035 8473 5.130477 TGCTAAATCTTAAATCCGTCCCTCT 59.870 40.000 0.00 0.00 0.00 3.69
4094 8532 5.581085 CGCTAGTTAAATGGTAAGCTCTGTT 59.419 40.000 0.00 0.00 0.00 3.16
4137 8575 4.654724 GGTTCAACCTCCCTAGCTTATACT 59.345 45.833 0.00 0.00 34.73 2.12
4138 8576 5.221481 GGTTCAACCTCCCTAGCTTATACTC 60.221 48.000 0.00 0.00 34.73 2.59
4139 8577 4.481072 TCAACCTCCCTAGCTTATACTCC 58.519 47.826 0.00 0.00 0.00 3.85
4140 8578 3.546429 ACCTCCCTAGCTTATACTCCC 57.454 52.381 0.00 0.00 0.00 4.30
4141 8579 3.072858 ACCTCCCTAGCTTATACTCCCT 58.927 50.000 0.00 0.00 0.00 4.20
4142 8580 3.076333 ACCTCCCTAGCTTATACTCCCTC 59.924 52.174 0.00 0.00 0.00 4.30
4143 8581 3.564790 CCTCCCTAGCTTATACTCCCTCC 60.565 56.522 0.00 0.00 0.00 4.30
4144 8582 2.041350 TCCCTAGCTTATACTCCCTCCG 59.959 54.545 0.00 0.00 0.00 4.63
4145 8583 2.225066 CCCTAGCTTATACTCCCTCCGT 60.225 54.545 0.00 0.00 0.00 4.69
4146 8584 3.009916 CCCTAGCTTATACTCCCTCCGTA 59.990 52.174 0.00 0.00 0.00 4.02
4149 8587 4.933505 AGCTTATACTCCCTCCGTAAAC 57.066 45.455 0.00 0.00 0.00 2.01
4150 8588 4.544683 AGCTTATACTCCCTCCGTAAACT 58.455 43.478 0.00 0.00 0.00 2.66
4151 8589 5.699143 AGCTTATACTCCCTCCGTAAACTA 58.301 41.667 0.00 0.00 0.00 2.24
4152 8590 6.131961 AGCTTATACTCCCTCCGTAAACTAA 58.868 40.000 0.00 0.00 0.00 2.24
4153 8591 6.781507 AGCTTATACTCCCTCCGTAAACTAAT 59.218 38.462 0.00 0.00 0.00 1.73
4155 8593 8.747471 GCTTATACTCCCTCCGTAAACTAATAT 58.253 37.037 0.00 0.00 0.00 1.28
4160 8598 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
4161 8599 9.377238 ACTCCCTCCGTAAACTAATATAAGAAT 57.623 33.333 0.00 0.00 0.00 2.40
4163 8601 9.151177 TCCCTCCGTAAACTAATATAAGAATGT 57.849 33.333 0.00 0.00 0.00 2.71
4164 8602 9.774413 CCCTCCGTAAACTAATATAAGAATGTT 57.226 33.333 0.00 0.00 0.00 2.71
4205 8643 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
4213 8651 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
4214 8652 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
4215 8653 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
4216 8654 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
4217 8655 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
4248 8686 2.274760 AGCTGAGCTCATTGCCCC 59.725 61.111 18.63 1.96 44.23 5.80
4249 8687 2.832201 GCTGAGCTCATTGCCCCC 60.832 66.667 18.63 0.00 44.23 5.40
4251 8689 1.453379 CTGAGCTCATTGCCCCCTG 60.453 63.158 18.63 0.00 44.23 4.45
4253 8691 1.304282 GAGCTCATTGCCCCCTGAA 59.696 57.895 9.40 0.00 44.23 3.02
4255 8693 2.054453 GCTCATTGCCCCCTGAACC 61.054 63.158 0.00 0.00 35.15 3.62
4256 8694 1.383799 CTCATTGCCCCCTGAACCA 59.616 57.895 0.00 0.00 0.00 3.67
4259 8697 1.077265 ATTGCCCCCTGAACCACTG 59.923 57.895 0.00 0.00 0.00 3.66
4272 8942 4.087892 CACTGCCCTCCACTCCGG 62.088 72.222 0.00 0.00 0.00 5.14
4273 8943 4.640690 ACTGCCCTCCACTCCGGT 62.641 66.667 0.00 0.00 35.57 5.28
4274 8944 4.087892 CTGCCCTCCACTCCGGTG 62.088 72.222 0.00 0.00 42.65 4.94
4290 8960 4.473643 TGGTAACAGCCACTGCAC 57.526 55.556 0.00 0.00 46.17 4.57
4291 8961 1.836391 TGGTAACAGCCACTGCACT 59.164 52.632 0.00 0.00 46.17 4.40
4292 8962 1.052617 TGGTAACAGCCACTGCACTA 58.947 50.000 0.00 0.00 46.17 2.74
4293 8963 1.270625 TGGTAACAGCCACTGCACTAC 60.271 52.381 0.00 0.00 46.17 2.73
4294 8964 1.439679 GTAACAGCCACTGCACTACC 58.560 55.000 0.00 0.00 41.13 3.18
4296 8966 0.401738 AACAGCCACTGCACTACCAT 59.598 50.000 0.00 0.00 41.13 3.55
4297 8967 0.036010 ACAGCCACTGCACTACCATC 60.036 55.000 0.00 0.00 41.13 3.51
4298 8968 1.086067 CAGCCACTGCACTACCATCG 61.086 60.000 0.00 0.00 41.13 3.84
4299 8969 1.079127 GCCACTGCACTACCATCGT 60.079 57.895 0.00 0.00 37.47 3.73
4300 8970 1.084370 GCCACTGCACTACCATCGTC 61.084 60.000 0.00 0.00 37.47 4.20
4302 8972 0.170339 CACTGCACTACCATCGTCGA 59.830 55.000 0.00 0.00 0.00 4.20
4303 8973 1.103803 ACTGCACTACCATCGTCGAT 58.896 50.000 0.75 0.75 0.00 3.59
4305 8975 0.028902 TGCACTACCATCGTCGATCG 59.971 55.000 9.36 9.36 41.41 3.69
4306 8976 1.269444 GCACTACCATCGTCGATCGC 61.269 60.000 11.09 4.79 39.67 4.58
4307 8977 0.028902 CACTACCATCGTCGATCGCA 59.971 55.000 11.09 0.00 39.67 5.10
4309 8979 1.337071 ACTACCATCGTCGATCGCAAT 59.663 47.619 11.09 0.32 39.67 3.56
4310 8980 2.223735 ACTACCATCGTCGATCGCAATT 60.224 45.455 11.09 0.00 39.67 2.32
4312 8982 0.383491 CCATCGTCGATCGCAATTGC 60.383 55.000 20.76 20.76 39.67 3.56
4322 8992 3.064324 GCAATTGCGAGGGCCAGT 61.064 61.111 15.87 0.00 38.85 4.00
4324 8994 1.675310 CAATTGCGAGGGCCAGTGA 60.675 57.895 6.18 0.00 38.85 3.41
4325 8995 1.675641 AATTGCGAGGGCCAGTGAC 60.676 57.895 6.18 0.00 38.85 3.67
4329 8999 2.671070 CGAGGGCCAGTGACCAAT 59.329 61.111 6.18 0.00 0.00 3.16
4330 9000 1.450312 CGAGGGCCAGTGACCAATC 60.450 63.158 6.18 0.00 0.00 2.67
4331 9001 1.077429 GAGGGCCAGTGACCAATCC 60.077 63.158 6.18 0.00 0.00 3.01
4332 9002 2.043953 GGGCCAGTGACCAATCCC 60.044 66.667 4.39 0.00 0.00 3.85
4333 9003 2.043953 GGCCAGTGACCAATCCCC 60.044 66.667 0.00 0.00 0.00 4.81
4335 9005 2.616458 GCCAGTGACCAATCCCCCT 61.616 63.158 0.00 0.00 0.00 4.79
4336 9006 2.087248 CCAGTGACCAATCCCCCTT 58.913 57.895 0.00 0.00 0.00 3.95
4337 9007 0.409484 CCAGTGACCAATCCCCCTTT 59.591 55.000 0.00 0.00 0.00 3.11
4338 9008 1.638589 CCAGTGACCAATCCCCCTTTA 59.361 52.381 0.00 0.00 0.00 1.85
4339 9009 2.357154 CCAGTGACCAATCCCCCTTTAG 60.357 54.545 0.00 0.00 0.00 1.85
4341 9011 2.846827 AGTGACCAATCCCCCTTTAGAG 59.153 50.000 0.00 0.00 0.00 2.43
4342 9012 2.576648 GTGACCAATCCCCCTTTAGAGT 59.423 50.000 0.00 0.00 0.00 3.24
4343 9013 2.844348 TGACCAATCCCCCTTTAGAGTC 59.156 50.000 0.00 0.00 0.00 3.36
4346 9016 2.439880 CCAATCCCCCTTTAGAGTCTCC 59.560 54.545 0.00 0.00 0.00 3.71
4347 9017 2.439880 CAATCCCCCTTTAGAGTCTCCC 59.560 54.545 0.00 0.00 0.00 4.30
4348 9018 1.098589 TCCCCCTTTAGAGTCTCCCA 58.901 55.000 0.00 0.00 0.00 4.37
4349 9019 1.008449 TCCCCCTTTAGAGTCTCCCAG 59.992 57.143 0.00 0.00 0.00 4.45
4354 9024 0.246635 TTTAGAGTCTCCCAGTGCGC 59.753 55.000 0.00 0.00 0.00 6.09
4355 9025 0.612174 TTAGAGTCTCCCAGTGCGCT 60.612 55.000 9.73 0.00 0.00 5.92
4356 9026 1.032657 TAGAGTCTCCCAGTGCGCTC 61.033 60.000 9.73 4.74 0.00 5.03
4357 9027 3.363844 GAGTCTCCCAGTGCGCTCC 62.364 68.421 9.73 0.00 0.00 4.70
4358 9028 4.459089 GTCTCCCAGTGCGCTCCC 62.459 72.222 9.73 0.00 0.00 4.30
4362 9032 4.335647 CCCAGTGCGCTCCCACTT 62.336 66.667 9.73 0.00 43.19 3.16
4368 9887 2.125106 GCGCTCCCACTTCGGATT 60.125 61.111 0.00 0.00 36.56 3.01
4372 9891 0.036388 GCTCCCACTTCGGATTGTGA 60.036 55.000 11.56 0.00 36.56 3.58
4374 9893 1.001974 CTCCCACTTCGGATTGTGACA 59.998 52.381 11.56 0.00 36.56 3.58
4394 9913 1.210478 ACTGCATTTAGTCATCGGCCT 59.790 47.619 0.00 0.00 0.00 5.19
4419 9938 2.220133 GCTTTTCTACGACGTGCTTTCA 59.780 45.455 11.56 0.00 0.00 2.69
4422 9941 5.412526 TTTTCTACGACGTGCTTTCATTT 57.587 34.783 11.56 0.00 0.00 2.32
4423 9942 6.528014 TTTTCTACGACGTGCTTTCATTTA 57.472 33.333 11.56 0.00 0.00 1.40
4426 9945 1.458064 ACGACGTGCTTTCATTTACCG 59.542 47.619 0.00 0.00 0.00 4.02
4441 9960 2.677765 TACCGGCGCAACCTTCCAAA 62.678 55.000 10.83 0.00 35.61 3.28
4442 9961 2.255252 CGGCGCAACCTTCCAAAG 59.745 61.111 10.83 0.00 35.61 2.77
4443 9962 2.551912 CGGCGCAACCTTCCAAAGT 61.552 57.895 10.83 0.00 35.61 2.66
4456 9975 4.457257 CCTTCCAAAGTTTCTCTGCTAAGG 59.543 45.833 0.00 0.00 0.00 2.69
4458 9977 3.394606 TCCAAAGTTTCTCTGCTAAGGGT 59.605 43.478 0.00 0.00 0.00 4.34
4462 9981 2.373502 AGTTTCTCTGCTAAGGGTGCTT 59.626 45.455 0.00 0.00 0.00 3.91
4489 10008 1.603455 GGTGCCAGCTAGCAAACCA 60.603 57.895 18.83 5.40 46.19 3.67
4492 10011 2.704808 GCCAGCTAGCAAACCAGGC 61.705 63.158 18.83 15.25 0.00 4.85
4533 10053 2.436109 GAGCTTGAGGTTGGGCCA 59.564 61.111 0.00 0.00 40.61 5.36
4559 10423 0.606130 ATGGTGATGTTGCAGCGTCA 60.606 50.000 20.12 20.12 39.04 4.35
4565 10429 0.671781 ATGTTGCAGCGTCACTCCTC 60.672 55.000 0.00 0.00 0.00 3.71
4568 10432 2.159819 TTGCAGCGTCACTCCTCCTC 62.160 60.000 0.00 0.00 0.00 3.71
4649 10528 9.174166 ACGGATAGAAATTATAACAAGCAAAGT 57.826 29.630 0.00 0.00 0.00 2.66
4667 11436 1.072173 AGTTGCTAGCCACACATGACA 59.928 47.619 20.04 0.00 0.00 3.58
4736 11505 7.386573 TGTCTTTGTTTTCCTTTGTTTCTTTCC 59.613 33.333 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.048127 GAGCGGGATATGCGGGAC 60.048 66.667 4.01 0.00 37.44 4.46
3 4 3.680786 CGAGCGGGATATGCGGGA 61.681 66.667 4.01 0.00 37.44 5.14
5 6 4.662961 TGCGAGCGGGATATGCGG 62.663 66.667 0.00 0.00 37.44 5.69
6 7 3.406361 GTGCGAGCGGGATATGCG 61.406 66.667 0.00 0.00 37.44 4.73
7 8 3.044305 GGTGCGAGCGGGATATGC 61.044 66.667 0.00 0.00 0.00 3.14
8 9 2.357517 GGGTGCGAGCGGGATATG 60.358 66.667 0.00 0.00 0.00 1.78
9 10 3.991051 CGGGTGCGAGCGGGATAT 61.991 66.667 0.00 0.00 0.00 1.63
23 24 4.907034 CTCGTCGGACGCATCGGG 62.907 72.222 24.76 0.00 42.21 5.14
24 25 4.175489 ACTCGTCGGACGCATCGG 62.175 66.667 24.76 13.71 42.21 4.18
25 26 2.648102 GACTCGTCGGACGCATCG 60.648 66.667 24.76 14.64 42.21 3.84
26 27 2.278013 GGACTCGTCGGACGCATC 60.278 66.667 24.76 21.59 42.21 3.91
27 28 4.175489 CGGACTCGTCGGACGCAT 62.175 66.667 24.76 15.07 42.21 4.73
29 30 4.808238 GTCGGACTCGTCGGACGC 62.808 72.222 24.76 11.47 45.42 5.19
35 36 4.773117 GGTGCGGTCGGACTCGTC 62.773 72.222 14.05 11.17 36.67 4.20
37 38 4.778415 CTGGTGCGGTCGGACTCG 62.778 72.222 14.05 10.83 36.67 4.18
38 39 3.681835 ACTGGTGCGGTCGGACTC 61.682 66.667 14.05 5.91 36.67 3.36
39 40 3.991051 CACTGGTGCGGTCGGACT 61.991 66.667 14.05 0.00 36.67 3.85
49 50 2.881266 CGTGTTGGACGCACTGGTG 61.881 63.158 0.00 0.00 42.21 4.17
50 51 2.587753 CGTGTTGGACGCACTGGT 60.588 61.111 0.00 0.00 42.21 4.00
58 59 2.241880 CGTGTGGGACGTGTTGGAC 61.242 63.158 0.00 0.00 43.50 4.02
59 60 2.107343 CGTGTGGGACGTGTTGGA 59.893 61.111 0.00 0.00 43.50 3.53
77 78 4.920112 TGTTGGGTGCGTCGGGTG 62.920 66.667 0.00 0.00 0.00 4.61
78 79 4.178169 TTGTTGGGTGCGTCGGGT 62.178 61.111 0.00 0.00 0.00 5.28
79 80 3.353836 CTTGTTGGGTGCGTCGGG 61.354 66.667 0.00 0.00 0.00 5.14
80 81 2.280524 TCTTGTTGGGTGCGTCGG 60.281 61.111 0.00 0.00 0.00 4.79
81 82 2.604174 GGTCTTGTTGGGTGCGTCG 61.604 63.158 0.00 0.00 0.00 5.12
82 83 2.604174 CGGTCTTGTTGGGTGCGTC 61.604 63.158 0.00 0.00 0.00 5.19
83 84 2.590575 CGGTCTTGTTGGGTGCGT 60.591 61.111 0.00 0.00 0.00 5.24
84 85 2.280524 TCGGTCTTGTTGGGTGCG 60.281 61.111 0.00 0.00 0.00 5.34
85 86 2.258726 GGTCGGTCTTGTTGGGTGC 61.259 63.158 0.00 0.00 0.00 5.01
86 87 1.959226 CGGTCGGTCTTGTTGGGTG 60.959 63.158 0.00 0.00 0.00 4.61
87 88 2.424302 CGGTCGGTCTTGTTGGGT 59.576 61.111 0.00 0.00 0.00 4.51
88 89 3.047877 GCGGTCGGTCTTGTTGGG 61.048 66.667 0.00 0.00 0.00 4.12
89 90 1.234615 AATGCGGTCGGTCTTGTTGG 61.235 55.000 0.00 0.00 0.00 3.77
90 91 1.434555 TAATGCGGTCGGTCTTGTTG 58.565 50.000 0.00 0.00 0.00 3.33
91 92 2.073816 CTTAATGCGGTCGGTCTTGTT 58.926 47.619 0.00 0.00 0.00 2.83
92 93 1.722011 CTTAATGCGGTCGGTCTTGT 58.278 50.000 0.00 0.00 0.00 3.16
93 94 0.373716 GCTTAATGCGGTCGGTCTTG 59.626 55.000 0.00 0.00 0.00 3.02
94 95 0.743345 GGCTTAATGCGGTCGGTCTT 60.743 55.000 0.00 0.00 44.05 3.01
95 96 1.153429 GGCTTAATGCGGTCGGTCT 60.153 57.895 0.00 0.00 44.05 3.85
96 97 2.522638 CGGCTTAATGCGGTCGGTC 61.523 63.158 0.00 0.00 44.05 4.79
97 98 2.510691 CGGCTTAATGCGGTCGGT 60.511 61.111 0.00 0.00 44.05 4.69
111 112 0.885196 TTGTTGGAATAAGCCACGGC 59.115 50.000 0.00 0.00 37.75 5.68
112 113 1.135402 GCTTGTTGGAATAAGCCACGG 60.135 52.381 9.12 0.00 44.35 4.94
113 114 2.262572 GCTTGTTGGAATAAGCCACG 57.737 50.000 9.12 0.00 44.35 4.94
118 119 5.452078 TGAGGTTTGCTTGTTGGAATAAG 57.548 39.130 0.00 0.00 0.00 1.73
119 120 7.531857 TTATGAGGTTTGCTTGTTGGAATAA 57.468 32.000 0.00 0.00 0.00 1.40
120 121 7.716799 ATTATGAGGTTTGCTTGTTGGAATA 57.283 32.000 0.00 0.00 0.00 1.75
121 122 6.610075 ATTATGAGGTTTGCTTGTTGGAAT 57.390 33.333 0.00 0.00 0.00 3.01
122 123 6.041409 TCAATTATGAGGTTTGCTTGTTGGAA 59.959 34.615 0.00 0.00 0.00 3.53
123 124 5.538053 TCAATTATGAGGTTTGCTTGTTGGA 59.462 36.000 0.00 0.00 0.00 3.53
124 125 5.782047 TCAATTATGAGGTTTGCTTGTTGG 58.218 37.500 0.00 0.00 0.00 3.77
125 126 8.028354 TGTATCAATTATGAGGTTTGCTTGTTG 58.972 33.333 0.00 0.00 39.39 3.33
126 127 8.121305 TGTATCAATTATGAGGTTTGCTTGTT 57.879 30.769 0.00 0.00 39.39 2.83
127 128 7.148018 CCTGTATCAATTATGAGGTTTGCTTGT 60.148 37.037 0.00 0.00 39.39 3.16
128 129 7.198390 CCTGTATCAATTATGAGGTTTGCTTG 58.802 38.462 0.00 0.00 39.39 4.01
129 130 6.322201 CCCTGTATCAATTATGAGGTTTGCTT 59.678 38.462 0.00 0.00 39.39 3.91
200 202 4.739716 GTGCTCGTTATTTTATGGGCAATG 59.260 41.667 0.00 0.00 41.90 2.82
227 229 5.453903 GCTAATGGGAGCTGAAGAGTTCATA 60.454 44.000 0.00 0.00 39.30 2.15
244 268 0.823356 CCCACGGGAATGGCTAATGG 60.823 60.000 0.00 0.00 38.55 3.16
274 298 3.951037 GAGTGAGCTCATCTCCAGAAGTA 59.049 47.826 21.47 0.00 41.18 2.24
386 424 3.181493 CCTAGATGTTTTGCACCATCTGC 60.181 47.826 23.32 2.62 45.53 4.26
387 425 3.181493 GCCTAGATGTTTTGCACCATCTG 60.181 47.826 23.32 16.07 45.53 2.90
433 475 3.133901 GGTTGTTCCACCATTCCTTGTTT 59.866 43.478 0.00 0.00 36.73 2.83
436 478 2.315176 TGGTTGTTCCACCATTCCTTG 58.685 47.619 0.00 0.00 42.27 3.61
503 921 2.740447 GTTGGTACTGAAAAGCTACGGG 59.260 50.000 0.00 0.00 0.00 5.28
504 922 3.660865 AGTTGGTACTGAAAAGCTACGG 58.339 45.455 0.00 0.00 31.99 4.02
584 1588 9.490379 AAGACAGTTGGTACTCTGTAAAAATAG 57.510 33.333 14.89 0.00 41.87 1.73
586 1590 8.747538 AAAGACAGTTGGTACTCTGTAAAAAT 57.252 30.769 14.89 3.31 41.87 1.82
590 1594 6.759827 GTGAAAAGACAGTTGGTACTCTGTAA 59.240 38.462 14.89 0.00 41.87 2.41
591 1595 6.127281 TGTGAAAAGACAGTTGGTACTCTGTA 60.127 38.462 14.89 1.75 41.87 2.74
681 1701 8.188799 CCAAGTTTATCACGAGACTTGTATAGA 58.811 37.037 12.41 0.00 44.54 1.98
735 1766 4.935885 TTTTGTTTCTTTTGCATGCGTT 57.064 31.818 14.09 0.00 0.00 4.84
844 1878 7.726291 CCTCCCAAAGTATGAGTAGAAGATAGA 59.274 40.741 0.00 0.00 0.00 1.98
878 1912 5.066505 GGTTCAAGCGGATGTTAATTGAGAT 59.933 40.000 0.00 0.00 32.00 2.75
922 1956 1.873591 GGTATGTGGGCTTGCTTATCG 59.126 52.381 0.00 0.00 0.00 2.92
945 1979 8.196802 TGAATCAACAAATACATACGAGGAAG 57.803 34.615 0.00 0.00 0.00 3.46
999 2064 0.251297 TGGAAGGTGTGGAAGGCATG 60.251 55.000 0.00 0.00 0.00 4.06
1095 2160 3.060602 GGAAGACTCAACTTGAAGACCG 58.939 50.000 0.00 0.00 0.00 4.79
1226 2291 3.482110 CAGAAAACGTTTTGCGGAAGAAG 59.518 43.478 29.67 5.93 46.52 2.85
1284 2349 9.475620 TGAAAGTCACTTCTTGGTATAGATCTA 57.524 33.333 4.57 4.57 0.00 1.98
1314 2379 7.628234 AGAGAGAAATTCCTTCAATAGCTTGA 58.372 34.615 0.00 0.00 39.62 3.02
1398 2463 7.015682 AGGTATCTCATCTGATTACGGACAAAT 59.984 37.037 0.00 0.00 33.97 2.32
1418 2483 1.440145 GGCTTCTTGGCGCAGGTATC 61.440 60.000 10.83 0.00 0.00 2.24
1455 2520 1.841302 TTGCAGCAGGAACCCGATCT 61.841 55.000 0.00 0.00 0.00 2.75
1570 2828 6.014669 GCCTCTTGGTATAGATCTGTCATCTT 60.015 42.308 5.18 0.00 35.27 2.40
1727 4424 9.241919 CTCTTGGTATAGATCTGTCATCTACAT 57.758 37.037 5.18 0.00 37.50 2.29
1728 4425 7.667635 CCTCTTGGTATAGATCTGTCATCTACA 59.332 40.741 5.18 0.00 33.91 2.74
1729 4426 7.668052 ACCTCTTGGTATAGATCTGTCATCTAC 59.332 40.741 5.18 0.00 46.43 2.59
1730 4427 7.760607 ACCTCTTGGTATAGATCTGTCATCTA 58.239 38.462 5.18 0.00 46.43 1.98
1792 5076 7.957002 ACAGATATTTCATTACTCTCACCGAT 58.043 34.615 0.00 0.00 0.00 4.18
1827 5127 7.502060 TCAGAAGGAGGAGAAACTATTTCAT 57.498 36.000 4.25 0.00 42.10 2.57
1832 5132 6.126911 GGTGAATCAGAAGGAGGAGAAACTAT 60.127 42.308 0.00 0.00 0.00 2.12
1835 5135 4.257731 GGTGAATCAGAAGGAGGAGAAAC 58.742 47.826 0.00 0.00 0.00 2.78
1974 5278 1.338960 TGAGCATTCTCCATGACGCAA 60.339 47.619 0.00 0.00 38.58 4.85
2003 5307 5.069318 TGACTTGTTTGAGCATGGATGTTA 58.931 37.500 0.00 0.00 0.00 2.41
2086 5411 7.795047 TGCATCATTATGGTTCTCTCTTAAGA 58.205 34.615 4.81 4.81 33.38 2.10
2127 5452 4.456911 AGACATGCACAAAATGACTAGTGG 59.543 41.667 0.00 0.00 30.05 4.00
2167 5493 7.765695 TTTGGATGAAAGCTATCAAGTCTTT 57.234 32.000 0.00 0.00 34.14 2.52
2266 5592 4.476113 TCTCTCATCAGGTGGAATTGGAAT 59.524 41.667 0.00 0.00 0.00 3.01
2267 5593 3.845992 TCTCTCATCAGGTGGAATTGGAA 59.154 43.478 0.00 0.00 0.00 3.53
2268 5594 3.453868 TCTCTCATCAGGTGGAATTGGA 58.546 45.455 0.00 0.00 0.00 3.53
2269 5595 3.920231 TCTCTCATCAGGTGGAATTGG 57.080 47.619 0.00 0.00 0.00 3.16
2270 5596 4.841422 AGTTCTCTCATCAGGTGGAATTG 58.159 43.478 0.00 0.00 0.00 2.32
2271 5597 5.511386 AAGTTCTCTCATCAGGTGGAATT 57.489 39.130 0.00 0.00 0.00 2.17
2468 5796 7.284261 TTGATGGAACAACAACACTAAGATTCA 59.716 33.333 0.00 0.00 45.91 2.57
2470 5798 7.581213 TTGATGGAACAACAACACTAAGATT 57.419 32.000 0.00 0.00 45.91 2.40
2546 6792 0.465460 GACCCTGCGCCATCCATTTA 60.465 55.000 4.18 0.00 0.00 1.40
2580 6827 1.818959 GCATGCAACTTGGCTTGGGA 61.819 55.000 14.21 0.00 38.83 4.37
2635 6882 5.958380 AGACCTCTTCTATGATGTTACCACA 59.042 40.000 0.00 0.00 32.15 4.17
2670 6917 2.448582 TTGGGACACCCTTGCGACT 61.449 57.895 8.34 0.00 45.70 4.18
2765 7012 1.173043 GGGTTGGCATCGTTGATTGA 58.827 50.000 0.00 0.00 0.00 2.57
2766 7013 0.179166 CGGGTTGGCATCGTTGATTG 60.179 55.000 0.00 0.00 0.00 2.67
2767 7014 1.933115 GCGGGTTGGCATCGTTGATT 61.933 55.000 0.00 0.00 0.00 2.57
2768 7015 2.406616 GCGGGTTGGCATCGTTGAT 61.407 57.895 0.00 0.00 0.00 2.57
2799 7046 2.599281 TGGGAGCTCGTTGTCGGA 60.599 61.111 7.83 0.00 37.69 4.55
2826 7073 2.372172 ACAAGGTGTCGAGAGGGAAATT 59.628 45.455 0.00 0.00 0.00 1.82
2849 7096 2.024414 GCAGTTTTGTGGGTCAAGTCT 58.976 47.619 0.00 0.00 37.35 3.24
2866 7113 3.123621 CGTAGTTAAGTTGAAGCAGGCAG 59.876 47.826 0.00 0.00 0.00 4.85
2930 7177 5.519206 GGTCCTTAATTCACAAGCTACGTAG 59.481 44.000 18.47 18.47 0.00 3.51
2934 7181 4.501071 TCGGTCCTTAATTCACAAGCTAC 58.499 43.478 0.00 0.00 0.00 3.58
3168 7419 1.066430 TGATGAGGTTACCGGTCTTGC 60.066 52.381 12.40 0.00 0.00 4.01
3226 7485 0.109504 CACGGCGGTTTTTATGGTGG 60.110 55.000 13.24 0.00 0.00 4.61
3360 7620 0.327095 TAACCCCCAGCCTCTGCATA 60.327 55.000 0.00 0.00 41.13 3.14
3361 7621 0.995675 ATAACCCCCAGCCTCTGCAT 60.996 55.000 0.00 0.00 41.13 3.96
3363 7623 1.149401 GATAACCCCCAGCCTCTGC 59.851 63.158 0.00 0.00 37.95 4.26
3365 7625 0.400670 GAGGATAACCCCCAGCCTCT 60.401 60.000 0.00 0.00 43.75 3.69
3366 7626 1.419720 GGAGGATAACCCCCAGCCTC 61.420 65.000 0.00 0.00 45.88 4.70
3367 7627 1.386057 GGAGGATAACCCCCAGCCT 60.386 63.158 0.00 0.00 33.53 4.58
3368 7628 0.994050 AAGGAGGATAACCCCCAGCC 60.994 60.000 0.00 0.00 36.73 4.85
3369 7629 0.927029 AAAGGAGGATAACCCCCAGC 59.073 55.000 0.00 0.00 36.73 4.85
3370 7630 4.873724 TTTAAAGGAGGATAACCCCCAG 57.126 45.455 0.00 0.00 36.73 4.45
3371 7631 5.824542 ATTTTAAAGGAGGATAACCCCCA 57.175 39.130 0.00 0.00 36.73 4.96
3372 7632 9.886337 TTATTATTTTAAAGGAGGATAACCCCC 57.114 33.333 0.00 0.00 36.73 5.40
3493 7913 7.148474 CGTCCTATATAGGCAAAATTAATGCGT 60.148 37.037 22.24 13.64 44.75 5.24
3745 8171 2.681848 GCTTTGGTCATCAGACATCAGG 59.318 50.000 0.00 0.00 46.80 3.86
3809 8235 5.570973 CAGATTCTATTCGAGTATGCTTCCG 59.429 44.000 0.00 0.00 0.00 4.30
3905 8341 9.082313 AGAAGTTCAGAACAATGTCCATAAATT 57.918 29.630 15.85 0.00 0.00 1.82
3932 8368 6.771267 AGTCCTCAGAATGTCATACGTACATA 59.229 38.462 0.00 0.00 36.56 2.29
4013 8451 9.209175 CATTAGAGGGACGGATTTAAGATTTAG 57.791 37.037 0.00 0.00 0.00 1.85
4019 8457 7.625828 AAAACATTAGAGGGACGGATTTAAG 57.374 36.000 0.00 0.00 0.00 1.85
4026 8464 6.150474 ACATTACAAAAACATTAGAGGGACGG 59.850 38.462 0.00 0.00 0.00 4.79
4030 8468 8.966868 ACCATACATTACAAAAACATTAGAGGG 58.033 33.333 0.00 0.00 0.00 4.30
4059 8497 5.121611 CCATTTAACTAGCGTCACACAATGA 59.878 40.000 0.00 0.00 33.79 2.57
4134 8572 9.866655 TTCTTATATTAGTTTACGGAGGGAGTA 57.133 33.333 0.00 0.00 0.00 2.59
4137 8575 9.151177 ACATTCTTATATTAGTTTACGGAGGGA 57.849 33.333 0.00 0.00 0.00 4.20
4138 8576 9.774413 AACATTCTTATATTAGTTTACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
4179 8617 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
4188 8626 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
4189 8627 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
4190 8628 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
4191 8629 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
4235 8673 1.034292 GTTCAGGGGGCAATGAGCTC 61.034 60.000 6.82 6.82 45.58 4.09
4239 8677 1.076549 GTGGTTCAGGGGGCAATGA 59.923 57.895 0.00 0.00 0.00 2.57
4241 8679 1.077265 CAGTGGTTCAGGGGGCAAT 59.923 57.895 0.00 0.00 0.00 3.56
4242 8680 2.520458 CAGTGGTTCAGGGGGCAA 59.480 61.111 0.00 0.00 0.00 4.52
4243 8681 4.284550 GCAGTGGTTCAGGGGGCA 62.285 66.667 0.00 0.00 0.00 5.36
4245 8683 4.366684 GGGCAGTGGTTCAGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
4248 8686 2.352805 GGAGGGCAGTGGTTCAGG 59.647 66.667 0.00 0.00 0.00 3.86
4249 8687 1.302832 GTGGAGGGCAGTGGTTCAG 60.303 63.158 0.00 0.00 0.00 3.02
4251 8689 1.003233 GAGTGGAGGGCAGTGGTTC 60.003 63.158 0.00 0.00 0.00 3.62
4253 8691 2.930562 GGAGTGGAGGGCAGTGGT 60.931 66.667 0.00 0.00 0.00 4.16
4255 8693 4.087892 CCGGAGTGGAGGGCAGTG 62.088 72.222 0.00 0.00 42.00 3.66
4256 8694 4.640690 ACCGGAGTGGAGGGCAGT 62.641 66.667 9.46 0.00 42.00 4.40
4273 8943 1.052617 TAGTGCAGTGGCTGTTACCA 58.947 50.000 3.69 0.00 41.91 3.25
4274 8944 1.439679 GTAGTGCAGTGGCTGTTACC 58.560 55.000 3.69 0.00 41.91 2.85
4275 8945 1.270625 TGGTAGTGCAGTGGCTGTTAC 60.271 52.381 3.69 0.00 41.91 2.50
4276 8946 1.052617 TGGTAGTGCAGTGGCTGTTA 58.947 50.000 3.69 0.00 41.91 2.41
4277 8947 0.401738 ATGGTAGTGCAGTGGCTGTT 59.598 50.000 3.69 0.00 41.91 3.16
4278 8948 0.036010 GATGGTAGTGCAGTGGCTGT 60.036 55.000 3.69 0.00 41.91 4.40
4279 8949 1.086067 CGATGGTAGTGCAGTGGCTG 61.086 60.000 3.69 0.00 41.91 4.85
4280 8950 1.219124 CGATGGTAGTGCAGTGGCT 59.781 57.895 3.69 0.00 41.91 4.75
4282 8952 0.802222 CGACGATGGTAGTGCAGTGG 60.802 60.000 3.69 0.00 0.00 4.00
4286 8956 0.028902 CGATCGACGATGGTAGTGCA 59.971 55.000 16.49 0.00 45.77 4.57
4287 8957 1.269444 GCGATCGACGATGGTAGTGC 61.269 60.000 21.57 5.65 45.77 4.40
4289 8959 0.736636 TTGCGATCGACGATGGTAGT 59.263 50.000 21.57 0.00 45.77 2.73
4290 8960 2.051879 ATTGCGATCGACGATGGTAG 57.948 50.000 21.57 5.07 45.77 3.18
4291 8961 2.124122 CAATTGCGATCGACGATGGTA 58.876 47.619 21.57 11.03 45.77 3.25
4292 8962 0.930310 CAATTGCGATCGACGATGGT 59.070 50.000 21.57 0.00 45.77 3.55
4293 8963 0.383491 GCAATTGCGATCGACGATGG 60.383 55.000 21.57 15.49 45.77 3.51
4294 8964 3.048420 GCAATTGCGATCGACGATG 57.952 52.632 21.57 12.69 45.77 3.84
4305 8975 3.064324 ACTGGCCCTCGCAATTGC 61.064 61.111 20.76 20.76 36.38 3.56
4306 8976 1.675310 TCACTGGCCCTCGCAATTG 60.675 57.895 0.00 0.00 36.38 2.32
4307 8977 1.675641 GTCACTGGCCCTCGCAATT 60.676 57.895 0.00 0.00 36.38 2.32
4309 8979 4.329545 GGTCACTGGCCCTCGCAA 62.330 66.667 0.00 0.00 36.38 4.85
4312 8982 1.450312 GATTGGTCACTGGCCCTCG 60.450 63.158 0.00 0.00 0.00 4.63
4313 8983 1.077429 GGATTGGTCACTGGCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
4314 8984 2.616458 GGGATTGGTCACTGGCCCT 61.616 63.158 0.00 0.00 32.78 5.19
4315 8985 2.043953 GGGATTGGTCACTGGCCC 60.044 66.667 0.00 0.00 0.00 5.80
4318 8988 0.409484 AAAGGGGGATTGGTCACTGG 59.591 55.000 0.00 0.00 0.00 4.00
4319 8989 2.576191 TCTAAAGGGGGATTGGTCACTG 59.424 50.000 0.00 0.00 0.00 3.66
4320 8990 2.846827 CTCTAAAGGGGGATTGGTCACT 59.153 50.000 0.00 0.00 0.00 3.41
4321 8991 2.576648 ACTCTAAAGGGGGATTGGTCAC 59.423 50.000 0.00 0.00 0.00 3.67
4322 8992 2.844348 GACTCTAAAGGGGGATTGGTCA 59.156 50.000 0.00 0.00 0.00 4.02
4324 8994 3.116174 GAGACTCTAAAGGGGGATTGGT 58.884 50.000 0.00 0.00 0.00 3.67
4325 8995 2.439880 GGAGACTCTAAAGGGGGATTGG 59.560 54.545 1.74 0.00 0.00 3.16
4327 8997 2.047296 TGGGAGACTCTAAAGGGGGATT 59.953 50.000 1.74 0.00 0.00 3.01
4329 8999 1.008449 CTGGGAGACTCTAAAGGGGGA 59.992 57.143 1.74 0.00 0.00 4.81
4330 9000 1.273896 ACTGGGAGACTCTAAAGGGGG 60.274 57.143 1.74 0.00 0.00 5.40
4331 9001 1.834263 CACTGGGAGACTCTAAAGGGG 59.166 57.143 1.74 0.00 0.00 4.79
4332 9002 1.208293 GCACTGGGAGACTCTAAAGGG 59.792 57.143 1.74 0.36 0.00 3.95
4333 9003 1.134965 CGCACTGGGAGACTCTAAAGG 60.135 57.143 1.74 0.00 0.00 3.11
4335 9005 0.246635 GCGCACTGGGAGACTCTAAA 59.753 55.000 0.30 0.00 0.00 1.85
4336 9006 0.612174 AGCGCACTGGGAGACTCTAA 60.612 55.000 11.47 0.00 0.00 2.10
4337 9007 1.000771 AGCGCACTGGGAGACTCTA 60.001 57.895 11.47 0.00 0.00 2.43
4338 9008 2.283532 AGCGCACTGGGAGACTCT 60.284 61.111 11.47 0.00 0.00 3.24
4339 9009 2.183046 GAGCGCACTGGGAGACTC 59.817 66.667 11.47 0.00 0.00 3.36
4341 9011 4.459089 GGGAGCGCACTGGGAGAC 62.459 72.222 11.47 0.00 0.00 3.36
4343 9013 4.767255 GTGGGAGCGCACTGGGAG 62.767 72.222 11.47 0.00 0.00 4.30
4346 9016 2.743928 GAAGTGGGAGCGCACTGG 60.744 66.667 18.98 0.00 0.00 4.00
4347 9017 3.114616 CGAAGTGGGAGCGCACTG 61.115 66.667 18.98 5.92 0.00 3.66
4348 9018 4.379243 CCGAAGTGGGAGCGCACT 62.379 66.667 11.47 13.60 0.00 4.40
4349 9019 3.665675 ATCCGAAGTGGGAGCGCAC 62.666 63.158 11.47 1.97 40.02 5.34
4354 9024 1.001974 TGTCACAATCCGAAGTGGGAG 59.998 52.381 4.95 0.00 40.02 4.30
4355 9025 1.052617 TGTCACAATCCGAAGTGGGA 58.947 50.000 4.95 0.00 41.17 4.37
4356 9026 1.156736 GTGTCACAATCCGAAGTGGG 58.843 55.000 0.00 0.00 38.76 4.61
4357 9027 1.800586 CAGTGTCACAATCCGAAGTGG 59.199 52.381 5.62 0.00 36.43 4.00
4358 9028 1.195448 GCAGTGTCACAATCCGAAGTG 59.805 52.381 5.62 0.00 37.10 3.16
4359 9029 1.202639 TGCAGTGTCACAATCCGAAGT 60.203 47.619 5.62 0.00 0.00 3.01
4361 9031 2.183478 ATGCAGTGTCACAATCCGAA 57.817 45.000 5.62 0.00 0.00 4.30
4362 9032 2.183478 AATGCAGTGTCACAATCCGA 57.817 45.000 5.62 0.00 0.00 4.55
4368 9887 3.679502 CGATGACTAAATGCAGTGTCACA 59.320 43.478 9.18 0.00 41.37 3.58
4372 9891 2.009774 GCCGATGACTAAATGCAGTGT 58.990 47.619 0.00 0.00 0.00 3.55
4374 9893 1.210478 AGGCCGATGACTAAATGCAGT 59.790 47.619 0.00 0.00 0.00 4.40
4394 9913 1.411394 CACGTCGTAGAAAAGCCGAA 58.589 50.000 0.00 0.00 39.69 4.30
4419 9938 1.310216 GGAAGGTTGCGCCGGTAAAT 61.310 55.000 4.18 0.00 43.70 1.40
4422 9941 2.677765 TTTGGAAGGTTGCGCCGGTA 62.678 55.000 4.18 0.00 43.70 4.02
4423 9942 4.572571 TTGGAAGGTTGCGCCGGT 62.573 61.111 4.18 0.00 43.70 5.28
4426 9945 0.104120 AAACTTTGGAAGGTTGCGCC 59.896 50.000 4.18 0.00 36.97 6.53
4441 9960 1.981495 AGCACCCTTAGCAGAGAAACT 59.019 47.619 0.00 0.00 0.00 2.66
4442 9961 2.481289 AGCACCCTTAGCAGAGAAAC 57.519 50.000 0.00 0.00 0.00 2.78
4443 9962 2.553028 CCAAGCACCCTTAGCAGAGAAA 60.553 50.000 0.00 0.00 0.00 2.52
4456 9975 2.032681 ACCGAGAAGCCAAGCACC 59.967 61.111 0.00 0.00 0.00 5.01
4458 9977 2.669569 GCACCGAGAAGCCAAGCA 60.670 61.111 0.00 0.00 0.00 3.91
4480 9999 0.037590 AATCACGGCCTGGTTTGCTA 59.962 50.000 0.00 0.00 0.00 3.49
4489 10008 2.125106 GCGGAGAAATCACGGCCT 60.125 61.111 0.00 0.00 0.00 5.19
4492 10011 1.419922 CAACGCGGAGAAATCACGG 59.580 57.895 12.47 0.00 0.00 4.94
4533 10053 3.317149 GCTGCAACATCACCATATGTCAT 59.683 43.478 1.24 0.00 39.16 3.06
4559 10423 5.326283 AAAAAGCTAAAAGGAGGAGGAGT 57.674 39.130 0.00 0.00 0.00 3.85
4649 10528 1.072173 AGTGTCATGTGTGGCTAGCAA 59.928 47.619 18.24 0.85 0.00 3.91
4667 11436 2.888069 GCCTCCTCTCTTCCTTCTGAGT 60.888 54.545 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.