Multiple sequence alignment - TraesCS1B01G082400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G082400 chr1B 100.000 6863 0 0 1 6863 65895980 65889118 0.000000e+00 12674.0
1 TraesCS1B01G082400 chr1B 92.191 397 26 4 3016 3410 65540147 65540540 2.160000e-154 556.0
2 TraesCS1B01G082400 chr1B 98.596 285 4 0 1 285 65907145 65906861 7.940000e-139 505.0
3 TraesCS1B01G082400 chr1B 80.377 637 109 5 1974 2602 65539531 65540159 2.900000e-128 470.0
4 TraesCS1B01G082400 chr1B 83.333 396 62 4 3009 3402 67117934 67118327 5.060000e-96 363.0
5 TraesCS1B01G082400 chr1B 87.500 112 13 1 6752 6863 300946493 300946603 2.010000e-25 128.0
6 TraesCS1B01G082400 chr1D 97.253 5024 121 10 286 5304 46382684 46377673 0.000000e+00 8497.0
7 TraesCS1B01G082400 chr1D 96.176 1046 28 6 5297 6340 46363727 46362692 0.000000e+00 1700.0
8 TraesCS1B01G082400 chr1D 79.786 841 152 10 1975 2800 47643361 47644198 4.580000e-166 595.0
9 TraesCS1B01G082400 chr1D 93.703 397 20 4 3016 3410 46179056 46179449 2.130000e-164 590.0
10 TraesCS1B01G082400 chr1D 80.625 640 99 14 1974 2602 46178443 46179068 8.060000e-129 472.0
11 TraesCS1B01G082400 chr1D 83.417 398 62 4 3007 3402 47644256 47644651 3.910000e-97 366.0
12 TraesCS1B01G082400 chr1D 82.468 154 23 4 6116 6266 386432108 386431956 1.550000e-26 132.0
13 TraesCS1B01G082400 chr1D 89.286 56 6 0 5808 5863 47646808 47646863 3.430000e-08 71.3
14 TraesCS1B01G082400 chr1A 88.871 1896 117 34 1046 2854 45826195 45824307 0.000000e+00 2246.0
15 TraesCS1B01G082400 chr1A 88.713 1896 122 33 1046 2854 45840190 45838300 0.000000e+00 2231.0
16 TraesCS1B01G082400 chr1A 93.816 954 32 3 3001 3928 45838307 45837355 0.000000e+00 1410.0
17 TraesCS1B01G082400 chr1A 93.410 956 33 5 3001 3928 45824314 45823361 0.000000e+00 1389.0
18 TraesCS1B01G082400 chr1A 94.500 800 32 4 4057 4856 45822978 45822191 0.000000e+00 1223.0
19 TraesCS1B01G082400 chr1A 94.500 800 32 4 4057 4856 45836972 45836185 0.000000e+00 1223.0
20 TraesCS1B01G082400 chr1A 93.759 689 25 9 6027 6703 45820889 45820207 0.000000e+00 1018.0
21 TraesCS1B01G082400 chr1A 93.140 656 43 2 4828 5482 45822187 45821533 0.000000e+00 961.0
22 TraesCS1B01G082400 chr1A 93.020 659 40 3 4828 5481 45836181 45835524 0.000000e+00 957.0
23 TraesCS1B01G082400 chr1A 91.851 589 25 12 6135 6703 45829754 45829169 0.000000e+00 800.0
24 TraesCS1B01G082400 chr1A 93.201 353 20 3 678 1030 45840611 45840263 3.670000e-142 516.0
25 TraesCS1B01G082400 chr1A 89.136 405 38 1 5492 5896 45835392 45834994 3.700000e-137 499.0
26 TraesCS1B01G082400 chr1A 98.246 285 5 0 1 285 169435229 169434945 3.700000e-137 499.0
27 TraesCS1B01G082400 chr1A 88.395 405 41 1 5492 5896 45821402 45821004 3.720000e-132 483.0
28 TraesCS1B01G082400 chr1A 91.946 298 16 1 4057 4354 45823342 45823053 1.780000e-110 411.0
29 TraesCS1B01G082400 chr1A 91.946 298 16 1 4057 4354 45837336 45837047 1.780000e-110 411.0
30 TraesCS1B01G082400 chr1A 94.619 223 11 1 5915 6136 45830100 45829878 1.830000e-90 344.0
31 TraesCS1B01G082400 chr1A 84.211 247 16 6 444 668 45840917 45840672 1.160000e-52 219.0
32 TraesCS1B01G082400 chr1A 88.793 116 12 1 6748 6863 132272331 132272217 2.580000e-29 141.0
33 TraesCS1B01G082400 chr1A 82.036 167 25 5 6113 6275 555641261 555641096 3.340000e-28 137.0
34 TraesCS1B01G082400 chr1A 82.468 154 23 4 6116 6266 486340773 486340621 1.550000e-26 132.0
35 TraesCS1B01G082400 chr1A 95.082 61 3 0 3868 3928 45823057 45822997 5.670000e-16 97.1
36 TraesCS1B01G082400 chr1A 95.082 61 3 0 3868 3928 45837051 45836991 5.670000e-16 97.1
37 TraesCS1B01G082400 chr6B 98.951 286 3 0 1 286 360307108 360306823 4.750000e-141 512.0
38 TraesCS1B01G082400 chr3A 98.601 286 4 0 1 286 487142765 487142480 2.210000e-139 507.0
39 TraesCS1B01G082400 chr3A 98.246 285 5 0 1 285 487154008 487153724 3.700000e-137 499.0
40 TraesCS1B01G082400 chr3A 90.351 114 11 0 6750 6863 13747443 13747556 4.290000e-32 150.0
41 TraesCS1B01G082400 chr4A 98.596 285 4 0 1 285 102137424 102137140 7.940000e-139 505.0
42 TraesCS1B01G082400 chr2A 98.252 286 5 0 1 286 266066655 266066940 1.030000e-137 501.0
43 TraesCS1B01G082400 chr2A 98.246 285 5 0 1 285 312783313 312783597 3.700000e-137 499.0
44 TraesCS1B01G082400 chr2A 88.793 232 26 0 3076 3307 749659838 749659607 1.130000e-72 285.0
45 TraesCS1B01G082400 chr2B 98.246 285 5 0 1 285 63430372 63430656 3.700000e-137 499.0
46 TraesCS1B01G082400 chr2B 88.655 238 27 0 3070 3307 755341277 755341040 2.420000e-74 291.0
47 TraesCS1B01G082400 chr3D 85.476 420 33 10 2395 2799 48718097 48717691 4.950000e-111 412.0
48 TraesCS1B01G082400 chr3D 81.081 296 41 7 3667 3953 48710592 48710303 8.960000e-54 222.0
49 TraesCS1B01G082400 chr3D 86.364 132 17 1 3429 3559 48717191 48717060 7.180000e-30 143.0
50 TraesCS1B01G082400 chr3B 84.146 410 30 15 2409 2799 77317487 77317880 1.410000e-96 364.0
51 TraesCS1B01G082400 chr3B 81.980 394 39 16 2414 2797 77419602 77419973 8.650000e-79 305.0
52 TraesCS1B01G082400 chr3B 81.419 296 38 10 3667 3953 77420713 77421000 6.930000e-55 226.0
53 TraesCS1B01G082400 chr3B 81.017 295 43 6 3667 3953 77318618 77318907 8.960000e-54 222.0
54 TraesCS1B01G082400 chr3B 82.500 160 24 3 6109 6264 245935454 245935613 3.340000e-28 137.0
55 TraesCS1B01G082400 chr3B 86.957 115 13 2 6750 6863 820517135 820517248 2.010000e-25 128.0
56 TraesCS1B01G082400 chr7B 91.964 112 9 0 6752 6863 49238655 49238766 2.560000e-34 158.0
57 TraesCS1B01G082400 chr6A 91.228 114 10 0 6750 6863 605397291 605397404 9.220000e-34 156.0
58 TraesCS1B01G082400 chr6A 84.868 152 20 2 6116 6264 184388177 184388328 4.290000e-32 150.0
59 TraesCS1B01G082400 chr7D 89.286 112 12 0 6752 6863 491858813 491858702 2.580000e-29 141.0
60 TraesCS1B01G082400 chr7D 88.393 112 13 0 6752 6863 629870746 629870635 1.200000e-27 135.0
61 TraesCS1B01G082400 chrUn 82.468 154 23 4 6116 6266 480163470 480163318 1.550000e-26 132.0
62 TraesCS1B01G082400 chr4D 87.500 112 14 0 6752 6863 73371399 73371288 5.590000e-26 130.0
63 TraesCS1B01G082400 chr7A 95.455 44 2 0 2956 2999 13781194 13781151 3.430000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G082400 chr1B 65889118 65895980 6862 True 12674.000000 12674 100.000000 1 6863 1 chr1B.!!$R1 6862
1 TraesCS1B01G082400 chr1B 65539531 65540540 1009 False 513.000000 556 86.284000 1974 3410 2 chr1B.!!$F3 1436
2 TraesCS1B01G082400 chr1D 46377673 46382684 5011 True 8497.000000 8497 97.253000 286 5304 1 chr1D.!!$R2 5018
3 TraesCS1B01G082400 chr1D 46362692 46363727 1035 True 1700.000000 1700 96.176000 5297 6340 1 chr1D.!!$R1 1043
4 TraesCS1B01G082400 chr1D 46178443 46179449 1006 False 531.000000 590 87.164000 1974 3410 2 chr1D.!!$F1 1436
5 TraesCS1B01G082400 chr1D 47643361 47646863 3502 False 344.100000 595 84.163000 1975 5863 3 chr1D.!!$F2 3888
6 TraesCS1B01G082400 chr1A 45820207 45830100 9893 True 897.210000 2246 92.557300 1046 6703 10 chr1A.!!$R5 5657
7 TraesCS1B01G082400 chr1A 45834994 45840917 5923 True 840.344444 2231 91.513889 444 5896 9 chr1A.!!$R6 5452
8 TraesCS1B01G082400 chr3D 48717060 48718097 1037 True 277.500000 412 85.920000 2395 3559 2 chr3D.!!$R2 1164
9 TraesCS1B01G082400 chr3B 77317487 77318907 1420 False 293.000000 364 82.581500 2409 3953 2 chr3B.!!$F3 1544
10 TraesCS1B01G082400 chr3B 77419602 77421000 1398 False 265.500000 305 81.699500 2414 3953 2 chr3B.!!$F4 1539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.033090 AGGTTCCGTTCGACTGGTTC 59.967 55.000 2.28 0.00 0.00 3.62 F
172 173 0.036294 GCTCCGAAGCTGGGTAAACT 60.036 55.000 4.15 0.00 45.55 2.66 F
212 213 0.099613 TCTGCTCTTCGTGCGATCTC 59.900 55.000 0.00 0.00 0.00 2.75 F
280 281 0.326927 TTCGTGGATCAGTTTCCCCC 59.673 55.000 0.00 0.00 34.67 5.40 F
283 284 0.392595 GTGGATCAGTTTCCCCCGAC 60.393 60.000 0.00 0.00 34.67 4.79 F
1067 3928 0.533032 CCCACTTCGTCCCTCTTCTC 59.467 60.000 0.00 0.00 0.00 2.87 F
2900 5892 0.172803 GACCCGCATAAGTCGACTGT 59.827 55.000 20.85 10.65 0.00 3.55 F
3972 7681 1.457303 GCTTGTCACTGTTCTGTAGCG 59.543 52.381 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 4239 0.603569 GAGGGAGCAACTTCGAGACA 59.396 55.000 0.00 0.00 0.00 3.41 R
1427 4333 2.436646 CCAACAGGTAGGCGCCAG 60.437 66.667 31.54 14.95 0.00 4.85 R
2196 5151 0.798159 TAGCACAACGCAGAGCATTG 59.202 50.000 0.00 0.00 46.13 2.82 R
2202 5157 2.766313 ACAAGATTAGCACAACGCAGA 58.234 42.857 0.00 0.00 46.13 4.26 R
2877 5869 2.098770 AGTCGACTTATGCGGGTCTAAC 59.901 50.000 13.58 0.00 0.00 2.34 R
2954 5946 0.654160 GCCCCGCTTCGTATACAAAC 59.346 55.000 3.32 0.00 0.00 2.93 R
4826 8623 1.268896 ACACAGACGTACCGTGTTCAG 60.269 52.381 10.41 0.00 40.91 3.02 R
6283 10303 0.251742 CCCTTCAGGCCCATGTCAAA 60.252 55.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.365111 AAGGAGGCCCATGCGCAA 62.365 61.111 17.11 0.00 38.85 4.85
21 22 4.402528 AGGCCCATGCGCAACGTA 62.403 61.111 17.11 0.00 38.85 3.57
22 23 3.876198 GGCCCATGCGCAACGTAG 61.876 66.667 17.11 2.68 38.85 3.51
23 24 2.817834 GCCCATGCGCAACGTAGA 60.818 61.111 17.11 0.00 0.00 2.59
24 25 2.813179 GCCCATGCGCAACGTAGAG 61.813 63.158 17.11 0.00 0.00 2.43
26 27 1.153647 CCATGCGCAACGTAGAGGA 60.154 57.895 17.11 0.00 0.00 3.71
27 28 1.148157 CCATGCGCAACGTAGAGGAG 61.148 60.000 17.11 0.00 0.00 3.69
29 30 1.605058 ATGCGCAACGTAGAGGAGGT 61.605 55.000 17.11 0.00 0.00 3.85
30 31 1.080025 GCGCAACGTAGAGGAGGTT 60.080 57.895 0.30 0.00 36.58 3.50
32 33 0.458025 CGCAACGTAGAGGAGGTTCC 60.458 60.000 0.00 0.00 33.89 3.62
33 34 0.458025 GCAACGTAGAGGAGGTTCCG 60.458 60.000 0.00 0.00 42.75 4.30
34 35 0.886563 CAACGTAGAGGAGGTTCCGT 59.113 55.000 0.00 0.00 42.75 4.69
36 37 1.172175 ACGTAGAGGAGGTTCCGTTC 58.828 55.000 0.00 0.00 42.75 3.95
37 38 0.098376 CGTAGAGGAGGTTCCGTTCG 59.902 60.000 0.00 0.00 42.75 3.95
38 39 1.457346 GTAGAGGAGGTTCCGTTCGA 58.543 55.000 0.00 0.00 42.75 3.71
39 40 1.132073 GTAGAGGAGGTTCCGTTCGAC 59.868 57.143 0.00 0.00 42.75 4.20
41 42 0.109226 GAGGAGGTTCCGTTCGACTG 60.109 60.000 0.00 0.00 42.75 3.51
42 43 1.080025 GGAGGTTCCGTTCGACTGG 60.080 63.158 0.00 0.00 0.00 4.00
43 44 1.664306 GAGGTTCCGTTCGACTGGT 59.336 57.895 2.28 0.00 0.00 4.00
45 46 0.033090 AGGTTCCGTTCGACTGGTTC 59.967 55.000 2.28 0.00 0.00 3.62
53 54 3.932289 CGACTGGTTCGCGAAGTT 58.068 55.556 24.13 6.46 41.87 2.66
55 56 1.773496 GACTGGTTCGCGAAGTTCG 59.227 57.895 24.13 20.87 43.89 3.95
56 57 0.662374 GACTGGTTCGCGAAGTTCGA 60.662 55.000 28.66 7.14 43.74 3.71
57 58 0.938168 ACTGGTTCGCGAAGTTCGAC 60.938 55.000 28.66 17.00 43.74 4.20
58 59 0.663568 CTGGTTCGCGAAGTTCGACT 60.664 55.000 28.66 0.00 43.74 4.18
61 62 1.337821 GTTCGCGAAGTTCGACTCAT 58.662 50.000 28.66 0.00 43.74 2.90
62 63 1.719780 GTTCGCGAAGTTCGACTCATT 59.280 47.619 28.66 0.00 43.74 2.57
63 64 1.614385 TCGCGAAGTTCGACTCATTC 58.386 50.000 28.66 8.00 43.74 2.67
73 74 2.933495 CGACTCATTCGTAACCCAGA 57.067 50.000 0.00 0.00 43.24 3.86
74 75 3.226346 CGACTCATTCGTAACCCAGAA 57.774 47.619 0.00 0.00 43.24 3.02
76 77 3.991773 CGACTCATTCGTAACCCAGAAAA 59.008 43.478 0.00 0.00 43.24 2.29
77 78 4.449743 CGACTCATTCGTAACCCAGAAAAA 59.550 41.667 0.00 0.00 43.24 1.94
78 79 5.614013 CGACTCATTCGTAACCCAGAAAAAC 60.614 44.000 0.00 0.00 43.24 2.43
79 80 5.127491 ACTCATTCGTAACCCAGAAAAACA 58.873 37.500 0.00 0.00 0.00 2.83
81 82 5.127491 TCATTCGTAACCCAGAAAAACACT 58.873 37.500 0.00 0.00 0.00 3.55
83 84 5.989551 TTCGTAACCCAGAAAAACACTAC 57.010 39.130 0.00 0.00 0.00 2.73
84 85 4.050553 TCGTAACCCAGAAAAACACTACG 58.949 43.478 0.00 0.00 0.00 3.51
88 89 2.104281 ACCCAGAAAAACACTACGCTCT 59.896 45.455 0.00 0.00 0.00 4.09
89 90 2.737252 CCCAGAAAAACACTACGCTCTC 59.263 50.000 0.00 0.00 0.00 3.20
90 91 3.555168 CCCAGAAAAACACTACGCTCTCT 60.555 47.826 0.00 0.00 0.00 3.10
92 93 4.551388 CAGAAAAACACTACGCTCTCTCT 58.449 43.478 0.00 0.00 0.00 3.10
93 94 4.619336 CAGAAAAACACTACGCTCTCTCTC 59.381 45.833 0.00 0.00 0.00 3.20
95 96 5.706369 AGAAAAACACTACGCTCTCTCTCTA 59.294 40.000 0.00 0.00 0.00 2.43
96 97 5.554822 AAAACACTACGCTCTCTCTCTAG 57.445 43.478 0.00 0.00 0.00 2.43
97 98 4.475051 AACACTACGCTCTCTCTCTAGA 57.525 45.455 0.00 0.00 0.00 2.43
110 111 5.384063 TCTCTCTAGAGCAAGAACACAAG 57.616 43.478 15.35 3.35 41.80 3.16
111 112 5.073428 TCTCTCTAGAGCAAGAACACAAGA 58.927 41.667 15.35 5.70 41.80 3.02
112 113 5.714333 TCTCTCTAGAGCAAGAACACAAGAT 59.286 40.000 15.35 0.00 41.80 2.40
114 115 7.394641 TCTCTCTAGAGCAAGAACACAAGATAA 59.605 37.037 15.35 0.00 41.80 1.75
116 117 8.194104 TCTCTAGAGCAAGAACACAAGATAATC 58.806 37.037 15.35 0.00 0.00 1.75
117 118 7.840931 TCTAGAGCAAGAACACAAGATAATCA 58.159 34.615 0.00 0.00 0.00 2.57
118 119 8.314021 TCTAGAGCAAGAACACAAGATAATCAA 58.686 33.333 0.00 0.00 0.00 2.57
119 120 7.750229 AGAGCAAGAACACAAGATAATCAAA 57.250 32.000 0.00 0.00 0.00 2.69
120 121 7.588512 AGAGCAAGAACACAAGATAATCAAAC 58.411 34.615 0.00 0.00 0.00 2.93
121 122 7.229306 AGAGCAAGAACACAAGATAATCAAACA 59.771 33.333 0.00 0.00 0.00 2.83
123 124 7.864379 AGCAAGAACACAAGATAATCAAACAAG 59.136 33.333 0.00 0.00 0.00 3.16
124 125 7.358683 GCAAGAACACAAGATAATCAAACAAGC 60.359 37.037 0.00 0.00 0.00 4.01
125 126 7.275888 AGAACACAAGATAATCAAACAAGCA 57.724 32.000 0.00 0.00 0.00 3.91
126 127 7.365741 AGAACACAAGATAATCAAACAAGCAG 58.634 34.615 0.00 0.00 0.00 4.24
127 128 5.464168 ACACAAGATAATCAAACAAGCAGC 58.536 37.500 0.00 0.00 0.00 5.25
128 129 5.009911 ACACAAGATAATCAAACAAGCAGCA 59.990 36.000 0.00 0.00 0.00 4.41
129 130 5.571741 CACAAGATAATCAAACAAGCAGCAG 59.428 40.000 0.00 0.00 0.00 4.24
130 131 5.242393 ACAAGATAATCAAACAAGCAGCAGT 59.758 36.000 0.00 0.00 0.00 4.40
132 133 6.674694 AGATAATCAAACAAGCAGCAGTAG 57.325 37.500 0.00 0.00 0.00 2.57
133 134 5.587844 AGATAATCAAACAAGCAGCAGTAGG 59.412 40.000 0.00 0.00 0.00 3.18
135 136 2.771089 TCAAACAAGCAGCAGTAGGAG 58.229 47.619 0.00 0.00 0.00 3.69
136 137 2.104792 TCAAACAAGCAGCAGTAGGAGT 59.895 45.455 0.00 0.00 0.00 3.85
138 139 1.051812 ACAAGCAGCAGTAGGAGTGT 58.948 50.000 0.00 0.00 0.00 3.55
140 141 2.632996 ACAAGCAGCAGTAGGAGTGTTA 59.367 45.455 0.00 0.00 0.00 2.41
141 142 3.261897 ACAAGCAGCAGTAGGAGTGTTAT 59.738 43.478 0.00 0.00 0.00 1.89
142 143 3.810310 AGCAGCAGTAGGAGTGTTATC 57.190 47.619 0.00 0.00 0.00 1.75
143 144 3.370104 AGCAGCAGTAGGAGTGTTATCT 58.630 45.455 0.00 0.00 0.00 1.98
144 145 3.383185 AGCAGCAGTAGGAGTGTTATCTC 59.617 47.826 0.00 0.00 0.00 2.75
172 173 0.036294 GCTCCGAAGCTGGGTAAACT 60.036 55.000 4.15 0.00 45.55 2.66
174 175 2.347731 CTCCGAAGCTGGGTAAACTTC 58.652 52.381 4.15 0.00 37.13 3.01
175 176 1.975680 TCCGAAGCTGGGTAAACTTCT 59.024 47.619 4.15 0.00 38.10 2.85
176 177 2.028385 TCCGAAGCTGGGTAAACTTCTC 60.028 50.000 4.15 0.00 38.10 2.87
177 178 1.993370 CGAAGCTGGGTAAACTTCTCG 59.007 52.381 0.00 0.00 38.10 4.04
178 179 2.609737 CGAAGCTGGGTAAACTTCTCGT 60.610 50.000 0.00 0.00 38.10 4.18
179 180 2.457366 AGCTGGGTAAACTTCTCGTG 57.543 50.000 0.00 0.00 0.00 4.35
181 182 1.798813 GCTGGGTAAACTTCTCGTGTG 59.201 52.381 0.00 0.00 0.00 3.82
182 183 1.798813 CTGGGTAAACTTCTCGTGTGC 59.201 52.381 0.00 0.00 0.00 4.57
183 184 1.414919 TGGGTAAACTTCTCGTGTGCT 59.585 47.619 0.00 0.00 0.00 4.40
184 185 2.158871 TGGGTAAACTTCTCGTGTGCTT 60.159 45.455 0.00 0.00 0.00 3.91
185 186 2.479275 GGGTAAACTTCTCGTGTGCTTC 59.521 50.000 0.00 0.00 0.00 3.86
186 187 2.155155 GGTAAACTTCTCGTGTGCTTCG 59.845 50.000 0.00 0.00 0.00 3.79
187 188 0.582005 AAACTTCTCGTGTGCTTCGC 59.418 50.000 0.00 0.00 0.00 4.70
188 189 1.222115 AACTTCTCGTGTGCTTCGCC 61.222 55.000 0.00 0.00 0.00 5.54
189 190 1.373497 CTTCTCGTGTGCTTCGCCT 60.373 57.895 0.00 0.00 0.00 5.52
190 191 1.347817 CTTCTCGTGTGCTTCGCCTC 61.348 60.000 0.00 0.00 0.00 4.70
191 192 3.175240 CTCGTGTGCTTCGCCTCG 61.175 66.667 0.00 0.00 0.00 4.63
192 193 3.610791 CTCGTGTGCTTCGCCTCGA 62.611 63.158 0.00 0.00 0.00 4.04
196 197 1.153765 TGTGCTTCGCCTCGATCTG 60.154 57.895 0.00 0.00 35.23 2.90
197 198 2.202797 TGCTTCGCCTCGATCTGC 60.203 61.111 0.00 0.00 35.23 4.26
198 199 2.105930 GCTTCGCCTCGATCTGCT 59.894 61.111 0.00 0.00 35.23 4.24
199 200 1.948635 GCTTCGCCTCGATCTGCTC 60.949 63.158 0.00 0.00 35.23 4.26
200 201 1.732917 CTTCGCCTCGATCTGCTCT 59.267 57.895 0.00 0.00 35.23 4.09
201 202 0.102120 CTTCGCCTCGATCTGCTCTT 59.898 55.000 0.00 0.00 35.23 2.85
202 203 0.101399 TTCGCCTCGATCTGCTCTTC 59.899 55.000 0.00 0.00 35.23 2.87
203 204 1.656875 CGCCTCGATCTGCTCTTCG 60.657 63.158 0.00 0.00 36.72 3.79
204 205 1.435515 GCCTCGATCTGCTCTTCGT 59.564 57.895 0.00 0.00 36.74 3.85
205 206 0.869454 GCCTCGATCTGCTCTTCGTG 60.869 60.000 0.00 1.70 36.74 4.35
206 207 0.869454 CCTCGATCTGCTCTTCGTGC 60.869 60.000 0.00 0.00 36.74 5.34
207 208 1.199229 CTCGATCTGCTCTTCGTGCG 61.199 60.000 0.00 0.00 36.74 5.34
208 209 1.226407 CGATCTGCTCTTCGTGCGA 60.226 57.895 0.00 0.00 0.00 5.10
211 212 0.743688 ATCTGCTCTTCGTGCGATCT 59.256 50.000 0.00 0.00 0.00 2.75
212 213 0.099613 TCTGCTCTTCGTGCGATCTC 59.900 55.000 0.00 0.00 0.00 2.75
213 214 0.869454 CTGCTCTTCGTGCGATCTCC 60.869 60.000 0.00 0.00 0.00 3.71
214 215 1.941734 GCTCTTCGTGCGATCTCCG 60.942 63.158 0.00 0.00 42.21 4.63
262 263 4.123545 GCCGGCCCCATAGGTGTT 62.124 66.667 18.11 0.00 38.26 3.32
263 264 2.192175 CCGGCCCCATAGGTGTTC 59.808 66.667 0.00 0.00 38.26 3.18
264 265 2.203015 CGGCCCCATAGGTGTTCG 60.203 66.667 0.00 0.00 38.26 3.95
265 266 2.995547 GGCCCCATAGGTGTTCGT 59.004 61.111 0.00 0.00 38.26 3.85
270 271 1.202651 CCCCATAGGTGTTCGTGGATC 60.203 57.143 0.00 0.00 33.53 3.36
271 272 1.484653 CCCATAGGTGTTCGTGGATCA 59.515 52.381 0.00 0.00 33.53 2.92
272 273 2.483714 CCCATAGGTGTTCGTGGATCAG 60.484 54.545 0.00 0.00 33.53 2.90
274 275 3.369471 CCATAGGTGTTCGTGGATCAGTT 60.369 47.826 0.00 0.00 33.53 3.16
276 277 2.767505 AGGTGTTCGTGGATCAGTTTC 58.232 47.619 0.00 0.00 0.00 2.78
277 278 1.804748 GGTGTTCGTGGATCAGTTTCC 59.195 52.381 0.00 0.00 36.24 3.13
278 279 1.804748 GTGTTCGTGGATCAGTTTCCC 59.195 52.381 0.00 0.00 34.67 3.97
279 280 1.271163 TGTTCGTGGATCAGTTTCCCC 60.271 52.381 0.00 0.00 34.67 4.81
280 281 0.326927 TTCGTGGATCAGTTTCCCCC 59.673 55.000 0.00 0.00 34.67 5.40
281 282 1.449601 CGTGGATCAGTTTCCCCCG 60.450 63.158 0.00 0.00 34.67 5.73
283 284 0.392595 GTGGATCAGTTTCCCCCGAC 60.393 60.000 0.00 0.00 34.67 4.79
361 362 3.399330 TGCTTACAGAAACAGTAGTGGC 58.601 45.455 1.92 0.00 0.00 5.01
371 372 2.125106 GTAGTGGCAAGCCCTCCG 60.125 66.667 8.89 0.00 34.56 4.63
513 514 8.664211 AGAGAAAACAAAAGAACTCGTAGATT 57.336 30.769 0.00 0.00 33.89 2.40
599 622 6.773200 TCCAGTTGAGATATCGACACTATTCT 59.227 38.462 10.31 0.00 0.00 2.40
673 700 9.337396 CCTTCATATGTAAATTAACTAGCACCA 57.663 33.333 1.90 0.00 0.00 4.17
758 831 1.067565 TGTCTAGCTGCAGCACACTAC 60.068 52.381 38.24 26.30 45.16 2.73
828 901 5.718130 TCAATCTCATGCTTCCCTTTTTCAT 59.282 36.000 0.00 0.00 0.00 2.57
1046 1119 6.577039 GCCCCTGCTCAAATGATATACATCTA 60.577 42.308 0.00 0.00 34.52 1.98
1067 3928 0.533032 CCCACTTCGTCCCTCTTCTC 59.467 60.000 0.00 0.00 0.00 2.87
1363 4239 6.954487 ACTTTCAACCCTAAAGTCGAAAAT 57.046 33.333 0.00 0.00 42.09 1.82
1413 4289 6.976349 TCAATAATGTGCAGCTTTCATCATTC 59.024 34.615 12.44 0.00 0.00 2.67
1422 4328 4.022589 CAGCTTTCATCATTCAAGTGGTGT 60.023 41.667 0.00 0.00 32.07 4.16
1423 4329 4.022589 AGCTTTCATCATTCAAGTGGTGTG 60.023 41.667 0.00 0.00 32.07 3.82
1424 4330 4.801891 CTTTCATCATTCAAGTGGTGTGG 58.198 43.478 0.00 0.00 32.07 4.17
1425 4331 2.161855 TCATCATTCAAGTGGTGTGGC 58.838 47.619 0.00 0.00 32.07 5.01
1426 4332 1.135603 CATCATTCAAGTGGTGTGGCG 60.136 52.381 0.00 0.00 0.00 5.69
1427 4333 1.081242 CATTCAAGTGGTGTGGCGC 60.081 57.895 0.00 0.00 0.00 6.53
1673 4586 5.048434 GGAGGGAGACATTTGTTTTCTCTTG 60.048 44.000 0.00 0.00 36.73 3.02
1810 4732 0.865769 GTAGGCGCCATGTAATTCGG 59.134 55.000 31.54 0.00 0.00 4.30
1841 4770 4.832248 TCGAAACCATTATGAGAGTTGCT 58.168 39.130 0.00 0.00 0.00 3.91
2016 4971 6.849588 ACTGATTGCCTTTCATTTTGTTTC 57.150 33.333 0.00 0.00 0.00 2.78
2699 5677 6.533730 TCAACTTGTGAGATGGACAGTTTAT 58.466 36.000 0.00 0.00 0.00 1.40
2897 5889 2.457970 GTTAGACCCGCATAAGTCGAC 58.542 52.381 7.70 7.70 38.08 4.20
2900 5892 0.172803 GACCCGCATAAGTCGACTGT 59.827 55.000 20.85 10.65 0.00 3.55
2924 5916 9.461312 TGTCAATACAATTTAAGCTAATCCACT 57.539 29.630 0.00 0.00 30.91 4.00
2932 5924 7.721286 ATTTAAGCTAATCCACTCAATCTCG 57.279 36.000 0.00 0.00 0.00 4.04
2954 5946 8.770828 TCTCGATTTAAAACTAAACTGTCCAAG 58.229 33.333 0.00 0.00 0.00 3.61
3111 6111 6.183360 ACACTGATAATGTAGTCGATGAGCTT 60.183 38.462 0.00 0.00 0.00 3.74
3113 6113 7.223582 CACTGATAATGTAGTCGATGAGCTTTT 59.776 37.037 0.00 0.00 0.00 2.27
3545 6793 2.203280 CCCTTGCCGACCACAACA 60.203 61.111 0.00 0.00 0.00 3.33
3766 7086 6.705863 AGTACTAAATCGGTTATTCGAGGT 57.294 37.500 0.00 0.00 42.69 3.85
3795 7139 7.148340 GCCATAGATGCAACTAGTTCCATATTC 60.148 40.741 12.06 1.46 0.00 1.75
3801 7145 9.331282 GATGCAACTAGTTCCATATTCTAGTTT 57.669 33.333 12.06 0.00 46.22 2.66
3963 7672 2.991250 AGAGTGTTTGCTTGTCACTGT 58.009 42.857 1.78 0.00 41.58 3.55
3964 7673 3.347216 AGAGTGTTTGCTTGTCACTGTT 58.653 40.909 1.78 0.00 41.58 3.16
3972 7681 1.457303 GCTTGTCACTGTTCTGTAGCG 59.543 52.381 0.00 0.00 0.00 4.26
3990 7699 1.608025 GCGAGTCTGGTCAATGTCCAA 60.608 52.381 0.33 0.00 34.35 3.53
4163 7872 2.090324 TCTGATGATCATCCCACTCCCT 60.090 50.000 28.61 0.00 37.02 4.20
4177 7886 2.237143 CACTCCCTAACTCATTGGAGCA 59.763 50.000 4.37 0.00 46.76 4.26
4250 7959 3.138304 TCTTCAAAGTCACAATCACCCG 58.862 45.455 0.00 0.00 0.00 5.28
4364 8073 8.971073 CAAACCCTGAGGATTTAATAAGATTGT 58.029 33.333 0.00 0.00 36.73 2.71
4826 8623 2.739671 GCCGGACGGTGTGTTACC 60.740 66.667 5.05 0.00 46.56 2.85
4870 8699 7.502895 TGTTTCACAGCCTGGTATTTTAAAGTA 59.497 33.333 0.00 0.00 0.00 2.24
5193 9062 7.174253 GCTACAATTTCACGGATTATCCCATAA 59.826 37.037 5.56 0.00 31.13 1.90
5778 9794 4.156190 CCGAGAGTGAGAGTAGCAAGTAAA 59.844 45.833 0.00 0.00 0.00 2.01
5788 9804 1.962306 GCAAGTAAACCGACGCCCA 60.962 57.895 0.00 0.00 0.00 5.36
5850 9866 1.895798 TCGACTGTCCTGAAGATGCTT 59.104 47.619 1.55 0.00 0.00 3.91
5873 9889 2.695666 AGCACGTATGAATACCAGAGCT 59.304 45.455 0.00 0.00 0.00 4.09
5940 9956 3.118445 AGGGATAGAAGTTGAGCTTGAGC 60.118 47.826 0.00 0.00 37.59 4.26
6035 10051 4.803613 TCGAGATGGTTATCGATTTGTGTG 59.196 41.667 1.71 0.00 42.61 3.82
6271 10291 8.523915 TTGTGAACGAAGGGAGTAGTATATAA 57.476 34.615 0.00 0.00 0.00 0.98
6277 10297 8.175925 ACGAAGGGAGTAGTATATAACTTTCC 57.824 38.462 0.00 0.00 39.80 3.13
6283 10303 6.433716 GGAGTAGTATATAACTTTCCGAGGCT 59.566 42.308 0.00 0.00 39.80 4.58
6309 10329 3.365265 GGCCTGAAGGGTGCAACG 61.365 66.667 0.00 0.00 38.12 4.10
6362 10382 7.707035 ACTCTAATTCTTATGTAACCAAGCTCG 59.293 37.037 0.00 0.00 0.00 5.03
6426 10446 9.180678 CAACAAATTTAGACACTACCAAATGTC 57.819 33.333 0.00 0.00 44.64 3.06
6464 10484 4.981806 TTTATTTTCCAGGCATCCTTCG 57.018 40.909 0.00 0.00 0.00 3.79
6476 10496 3.174375 GCATCCTTCGTCAATTGCTTTC 58.826 45.455 0.00 0.00 0.00 2.62
6609 10633 2.092914 CCAGGTGGTAGGATTGGAACTC 60.093 54.545 0.00 0.00 0.00 3.01
6619 10643 7.664318 TGGTAGGATTGGAACTCTTTTCTTTAC 59.336 37.037 0.00 0.00 0.00 2.01
6700 10729 2.003937 TGAGGTGCACTGGTACACTA 57.996 50.000 17.98 0.00 36.99 2.74
6703 10732 2.164624 GAGGTGCACTGGTACACTAGAG 59.835 54.545 17.98 0.00 36.99 2.43
6704 10733 1.204941 GGTGCACTGGTACACTAGAGG 59.795 57.143 17.98 0.00 36.99 3.69
6705 10734 0.895530 TGCACTGGTACACTAGAGGC 59.104 55.000 0.00 3.96 0.00 4.70
6706 10735 0.175989 GCACTGGTACACTAGAGGCC 59.824 60.000 0.00 0.00 0.00 5.19
6707 10736 1.557099 CACTGGTACACTAGAGGCCA 58.443 55.000 5.01 1.07 0.00 5.36
6708 10737 1.899814 CACTGGTACACTAGAGGCCAA 59.100 52.381 5.01 0.00 0.00 4.52
6709 10738 2.301870 CACTGGTACACTAGAGGCCAAA 59.698 50.000 5.01 0.00 0.00 3.28
6710 10739 2.976882 ACTGGTACACTAGAGGCCAAAA 59.023 45.455 5.01 0.00 0.00 2.44
6711 10740 3.393278 ACTGGTACACTAGAGGCCAAAAA 59.607 43.478 5.01 0.00 0.00 1.94
6712 10741 3.746940 TGGTACACTAGAGGCCAAAAAC 58.253 45.455 5.01 0.00 0.00 2.43
6713 10742 3.079578 GGTACACTAGAGGCCAAAAACC 58.920 50.000 5.01 0.00 0.00 3.27
6714 10743 3.497227 GGTACACTAGAGGCCAAAAACCA 60.497 47.826 5.01 0.00 0.00 3.67
6715 10744 3.525800 ACACTAGAGGCCAAAAACCAT 57.474 42.857 5.01 0.00 0.00 3.55
6716 10745 3.844640 ACACTAGAGGCCAAAAACCATT 58.155 40.909 5.01 0.00 0.00 3.16
6717 10746 3.573967 ACACTAGAGGCCAAAAACCATTG 59.426 43.478 5.01 0.00 0.00 2.82
6718 10747 3.826157 CACTAGAGGCCAAAAACCATTGA 59.174 43.478 5.01 0.00 31.84 2.57
6719 10748 4.082125 ACTAGAGGCCAAAAACCATTGAG 58.918 43.478 5.01 0.00 31.84 3.02
6720 10749 2.250924 AGAGGCCAAAAACCATTGAGG 58.749 47.619 5.01 0.00 45.67 3.86
6729 10758 4.828409 CCATTGAGGTGCACTGGT 57.172 55.556 17.98 1.24 41.18 4.00
6730 10759 3.955145 CCATTGAGGTGCACTGGTA 57.045 52.632 17.98 0.61 41.18 3.25
6731 10760 1.453155 CCATTGAGGTGCACTGGTAC 58.547 55.000 17.98 0.00 41.18 3.34
6732 10761 1.271325 CCATTGAGGTGCACTGGTACA 60.271 52.381 17.98 7.27 41.18 2.90
6733 10762 2.618816 CCATTGAGGTGCACTGGTACAT 60.619 50.000 17.98 0.00 41.18 2.29
6734 10763 2.949177 TTGAGGTGCACTGGTACATT 57.051 45.000 17.98 0.00 38.20 2.71
6735 10764 2.183478 TGAGGTGCACTGGTACATTG 57.817 50.000 17.98 0.00 42.19 2.82
6736 10765 1.271325 TGAGGTGCACTGGTACATTGG 60.271 52.381 17.98 0.00 39.52 3.16
6737 10766 1.003118 GAGGTGCACTGGTACATTGGA 59.997 52.381 17.98 0.00 39.52 3.53
6738 10767 1.635487 AGGTGCACTGGTACATTGGAT 59.365 47.619 17.98 0.00 41.68 3.41
6739 10768 2.017049 GGTGCACTGGTACATTGGATC 58.983 52.381 17.98 0.00 41.68 3.36
6740 10769 2.617788 GGTGCACTGGTACATTGGATCA 60.618 50.000 17.98 0.00 41.68 2.92
6741 10770 3.282021 GTGCACTGGTACATTGGATCAT 58.718 45.455 10.32 0.00 41.68 2.45
6742 10771 3.313526 GTGCACTGGTACATTGGATCATC 59.686 47.826 10.32 0.00 41.68 2.92
6743 10772 3.054508 TGCACTGGTACATTGGATCATCA 60.055 43.478 0.00 0.00 39.52 3.07
6744 10773 4.139786 GCACTGGTACATTGGATCATCAT 58.860 43.478 0.00 0.00 39.52 2.45
6745 10774 5.163216 TGCACTGGTACATTGGATCATCATA 60.163 40.000 0.00 0.00 39.52 2.15
6746 10775 5.942236 GCACTGGTACATTGGATCATCATAT 59.058 40.000 0.00 0.00 39.52 1.78
6747 10776 7.105588 GCACTGGTACATTGGATCATCATATA 58.894 38.462 0.00 0.00 39.52 0.86
6748 10777 7.279536 GCACTGGTACATTGGATCATCATATAG 59.720 40.741 0.00 0.00 39.52 1.31
6749 10778 7.279536 CACTGGTACATTGGATCATCATATAGC 59.720 40.741 0.00 0.00 38.20 2.97
6750 10779 7.038088 ACTGGTACATTGGATCATCATATAGCA 60.038 37.037 0.00 0.00 38.20 3.49
6751 10780 7.864770 TGGTACATTGGATCATCATATAGCAT 58.135 34.615 0.00 0.00 0.00 3.79
6752 10781 8.991275 TGGTACATTGGATCATCATATAGCATA 58.009 33.333 0.00 0.00 0.00 3.14
6753 10782 9.265901 GGTACATTGGATCATCATATAGCATAC 57.734 37.037 0.00 0.00 0.00 2.39
6756 10785 8.209584 ACATTGGATCATCATATAGCATACTCC 58.790 37.037 0.00 0.00 0.00 3.85
6757 10786 6.737720 TGGATCATCATATAGCATACTCCC 57.262 41.667 0.00 0.00 0.00 4.30
6758 10787 6.447326 TGGATCATCATATAGCATACTCCCT 58.553 40.000 0.00 0.00 0.00 4.20
6759 10788 6.552725 TGGATCATCATATAGCATACTCCCTC 59.447 42.308 0.00 0.00 0.00 4.30
6760 10789 6.014669 GGATCATCATATAGCATACTCCCTCC 60.015 46.154 0.00 0.00 0.00 4.30
6761 10790 4.889995 TCATCATATAGCATACTCCCTCCG 59.110 45.833 0.00 0.00 0.00 4.63
6762 10791 4.317530 TCATATAGCATACTCCCTCCGT 57.682 45.455 0.00 0.00 0.00 4.69
6763 10792 4.673968 TCATATAGCATACTCCCTCCGTT 58.326 43.478 0.00 0.00 0.00 4.44
6764 10793 4.705507 TCATATAGCATACTCCCTCCGTTC 59.294 45.833 0.00 0.00 0.00 3.95
6765 10794 2.750141 TAGCATACTCCCTCCGTTCT 57.250 50.000 0.00 0.00 0.00 3.01
6766 10795 1.867363 AGCATACTCCCTCCGTTCTT 58.133 50.000 0.00 0.00 0.00 2.52
6767 10796 1.482593 AGCATACTCCCTCCGTTCTTG 59.517 52.381 0.00 0.00 0.00 3.02
6768 10797 1.480954 GCATACTCCCTCCGTTCTTGA 59.519 52.381 0.00 0.00 0.00 3.02
6769 10798 2.093658 GCATACTCCCTCCGTTCTTGAA 60.094 50.000 0.00 0.00 0.00 2.69
6770 10799 3.618997 GCATACTCCCTCCGTTCTTGAAA 60.619 47.826 0.00 0.00 0.00 2.69
6771 10800 4.575885 CATACTCCCTCCGTTCTTGAAAA 58.424 43.478 0.00 0.00 0.00 2.29
6772 10801 3.570912 ACTCCCTCCGTTCTTGAAAAA 57.429 42.857 0.00 0.00 0.00 1.94
6796 10825 8.702163 AAATGTACTTTCAACTTTGTTGAAGG 57.298 30.769 23.91 23.91 39.30 3.46
6797 10826 6.202516 TGTACTTTCAACTTTGTTGAAGGG 57.797 37.500 26.83 21.96 39.07 3.95
6798 10827 5.712917 TGTACTTTCAACTTTGTTGAAGGGT 59.287 36.000 26.83 24.67 39.07 4.34
6799 10828 5.324784 ACTTTCAACTTTGTTGAAGGGTC 57.675 39.130 26.83 0.00 39.07 4.46
6800 10829 4.770010 ACTTTCAACTTTGTTGAAGGGTCA 59.230 37.500 26.83 13.61 39.07 4.02
6801 10830 5.245075 ACTTTCAACTTTGTTGAAGGGTCAA 59.755 36.000 26.83 13.10 41.57 3.18
6802 10831 5.730296 TTCAACTTTGTTGAAGGGTCAAA 57.270 34.783 18.28 0.00 45.29 2.69
6803 10832 5.066968 TCAACTTTGTTGAAGGGTCAAAC 57.933 39.130 10.25 0.00 45.29 2.93
6804 10833 4.770010 TCAACTTTGTTGAAGGGTCAAACT 59.230 37.500 10.25 0.00 45.29 2.66
6805 10834 5.946972 TCAACTTTGTTGAAGGGTCAAACTA 59.053 36.000 10.25 0.00 45.29 2.24
6806 10835 6.605594 TCAACTTTGTTGAAGGGTCAAACTAT 59.394 34.615 10.25 0.00 45.29 2.12
6807 10836 6.635030 ACTTTGTTGAAGGGTCAAACTATC 57.365 37.500 0.00 0.00 45.29 2.08
6808 10837 6.365520 ACTTTGTTGAAGGGTCAAACTATCT 58.634 36.000 0.00 0.00 45.29 1.98
6809 10838 6.833933 ACTTTGTTGAAGGGTCAAACTATCTT 59.166 34.615 0.00 0.00 45.29 2.40
6810 10839 7.996644 ACTTTGTTGAAGGGTCAAACTATCTTA 59.003 33.333 0.00 0.00 45.29 2.10
6811 10840 8.754991 TTTGTTGAAGGGTCAAACTATCTTAA 57.245 30.769 0.00 0.00 45.29 1.85
6812 10841 8.754991 TTGTTGAAGGGTCAAACTATCTTAAA 57.245 30.769 0.00 0.00 45.29 1.52
6813 10842 8.391075 TGTTGAAGGGTCAAACTATCTTAAAG 57.609 34.615 0.00 0.00 45.29 1.85
6814 10843 7.996644 TGTTGAAGGGTCAAACTATCTTAAAGT 59.003 33.333 0.00 0.00 45.29 2.66
6815 10844 8.847196 GTTGAAGGGTCAAACTATCTTAAAGTT 58.153 33.333 0.00 0.00 45.29 2.66
6816 10845 8.990163 TGAAGGGTCAAACTATCTTAAAGTTT 57.010 30.769 0.00 0.00 45.64 2.66
6831 10860 8.001881 TCTTAAAGTTTGACCAAGTTTATGCA 57.998 30.769 0.00 0.00 39.17 3.96
6832 10861 8.470805 TCTTAAAGTTTGACCAAGTTTATGCAA 58.529 29.630 0.00 0.00 39.17 4.08
6833 10862 9.092876 CTTAAAGTTTGACCAAGTTTATGCAAA 57.907 29.630 0.00 0.00 39.17 3.68
6834 10863 7.538303 AAAGTTTGACCAAGTTTATGCAAAG 57.462 32.000 0.00 0.00 36.42 2.77
6835 10864 6.463995 AGTTTGACCAAGTTTATGCAAAGA 57.536 33.333 0.00 0.00 0.00 2.52
6836 10865 7.054491 AGTTTGACCAAGTTTATGCAAAGAT 57.946 32.000 0.00 0.00 0.00 2.40
6837 10866 8.177119 AGTTTGACCAAGTTTATGCAAAGATA 57.823 30.769 0.00 0.00 0.00 1.98
6838 10867 8.806146 AGTTTGACCAAGTTTATGCAAAGATAT 58.194 29.630 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.173669 CCTCTACGTTGCGCATGGG 61.174 63.158 12.75 5.19 0.00 4.00
8 9 1.148157 CTCCTCTACGTTGCGCATGG 61.148 60.000 12.75 9.04 0.00 3.66
9 10 1.148157 CCTCCTCTACGTTGCGCATG 61.148 60.000 12.75 10.15 0.00 4.06
11 12 1.812686 AACCTCCTCTACGTTGCGCA 61.813 55.000 5.66 5.66 0.00 6.09
12 13 1.077089 GAACCTCCTCTACGTTGCGC 61.077 60.000 0.00 0.00 0.00 6.09
13 14 0.458025 GGAACCTCCTCTACGTTGCG 60.458 60.000 0.00 0.00 32.53 4.85
15 16 0.886563 ACGGAACCTCCTCTACGTTG 59.113 55.000 0.00 0.00 33.30 4.10
16 17 1.543358 GAACGGAACCTCCTCTACGTT 59.457 52.381 0.00 0.00 45.67 3.99
17 18 1.172175 GAACGGAACCTCCTCTACGT 58.828 55.000 0.00 0.00 33.30 3.57
18 19 0.098376 CGAACGGAACCTCCTCTACG 59.902 60.000 0.00 0.00 33.30 3.51
21 22 0.251253 AGTCGAACGGAACCTCCTCT 60.251 55.000 0.00 0.00 33.30 3.69
22 23 0.109226 CAGTCGAACGGAACCTCCTC 60.109 60.000 0.00 0.00 33.30 3.71
23 24 1.533469 CCAGTCGAACGGAACCTCCT 61.533 60.000 0.00 0.00 33.30 3.69
24 25 1.080025 CCAGTCGAACGGAACCTCC 60.080 63.158 0.00 0.00 0.00 4.30
26 27 0.033090 GAACCAGTCGAACGGAACCT 59.967 55.000 8.32 0.00 0.00 3.50
27 28 2.525422 GAACCAGTCGAACGGAACC 58.475 57.895 8.32 0.00 0.00 3.62
37 38 0.662374 TCGAACTTCGCGAACCAGTC 60.662 55.000 19.38 11.30 40.21 3.51
38 39 0.938168 GTCGAACTTCGCGAACCAGT 60.938 55.000 19.38 12.18 40.21 4.00
39 40 0.663568 AGTCGAACTTCGCGAACCAG 60.664 55.000 19.38 11.42 40.21 4.00
41 42 0.662374 TGAGTCGAACTTCGCGAACC 60.662 55.000 19.38 9.14 40.21 3.62
42 43 1.337821 ATGAGTCGAACTTCGCGAAC 58.662 50.000 19.38 7.97 40.21 3.95
43 44 1.983605 GAATGAGTCGAACTTCGCGAA 59.016 47.619 22.01 22.01 40.21 4.70
55 56 5.237779 TGTTTTTCTGGGTTACGAATGAGTC 59.762 40.000 0.00 0.00 0.00 3.36
56 57 5.008316 GTGTTTTTCTGGGTTACGAATGAGT 59.992 40.000 0.00 0.00 0.00 3.41
57 58 5.238650 AGTGTTTTTCTGGGTTACGAATGAG 59.761 40.000 0.00 0.00 0.00 2.90
58 59 5.127491 AGTGTTTTTCTGGGTTACGAATGA 58.873 37.500 0.00 0.00 0.00 2.57
61 62 4.507388 CGTAGTGTTTTTCTGGGTTACGAA 59.493 41.667 0.00 0.00 35.86 3.85
62 63 4.050553 CGTAGTGTTTTTCTGGGTTACGA 58.949 43.478 0.00 0.00 35.86 3.43
63 64 3.363280 GCGTAGTGTTTTTCTGGGTTACG 60.363 47.826 0.00 0.00 36.62 3.18
65 66 4.060205 GAGCGTAGTGTTTTTCTGGGTTA 58.940 43.478 0.00 0.00 0.00 2.85
66 67 2.876550 GAGCGTAGTGTTTTTCTGGGTT 59.123 45.455 0.00 0.00 0.00 4.11
67 68 2.104281 AGAGCGTAGTGTTTTTCTGGGT 59.896 45.455 0.00 0.00 0.00 4.51
68 69 2.737252 GAGAGCGTAGTGTTTTTCTGGG 59.263 50.000 0.00 0.00 0.00 4.45
69 70 3.654414 AGAGAGCGTAGTGTTTTTCTGG 58.346 45.455 0.00 0.00 0.00 3.86
70 71 4.551388 AGAGAGAGCGTAGTGTTTTTCTG 58.449 43.478 0.00 0.00 0.00 3.02
71 72 4.521256 AGAGAGAGAGCGTAGTGTTTTTCT 59.479 41.667 0.00 0.00 0.00 2.52
72 73 4.800784 AGAGAGAGAGCGTAGTGTTTTTC 58.199 43.478 0.00 0.00 0.00 2.29
73 74 4.857509 AGAGAGAGAGCGTAGTGTTTTT 57.142 40.909 0.00 0.00 0.00 1.94
74 75 5.247084 TCTAGAGAGAGAGCGTAGTGTTTT 58.753 41.667 0.00 0.00 0.00 2.43
76 77 4.475051 TCTAGAGAGAGAGCGTAGTGTT 57.525 45.455 0.00 0.00 0.00 3.32
88 89 5.073428 TCTTGTGTTCTTGCTCTAGAGAGA 58.927 41.667 24.24 14.84 44.74 3.10
89 90 5.384063 TCTTGTGTTCTTGCTCTAGAGAG 57.616 43.478 24.24 12.68 44.75 3.20
90 91 5.991933 ATCTTGTGTTCTTGCTCTAGAGA 57.008 39.130 24.24 5.89 0.00 3.10
92 93 7.840931 TGATTATCTTGTGTTCTTGCTCTAGA 58.159 34.615 0.00 0.00 0.00 2.43
93 94 8.484641 TTGATTATCTTGTGTTCTTGCTCTAG 57.515 34.615 0.00 0.00 0.00 2.43
95 96 7.229306 TGTTTGATTATCTTGTGTTCTTGCTCT 59.771 33.333 0.00 0.00 0.00 4.09
96 97 7.362662 TGTTTGATTATCTTGTGTTCTTGCTC 58.637 34.615 0.00 0.00 0.00 4.26
97 98 7.275888 TGTTTGATTATCTTGTGTTCTTGCT 57.724 32.000 0.00 0.00 0.00 3.91
98 99 7.358683 GCTTGTTTGATTATCTTGTGTTCTTGC 60.359 37.037 0.00 0.00 0.00 4.01
100 101 7.715657 TGCTTGTTTGATTATCTTGTGTTCTT 58.284 30.769 0.00 0.00 0.00 2.52
104 105 5.009911 TGCTGCTTGTTTGATTATCTTGTGT 59.990 36.000 0.00 0.00 0.00 3.72
105 106 5.463286 TGCTGCTTGTTTGATTATCTTGTG 58.537 37.500 0.00 0.00 0.00 3.33
106 107 5.242393 ACTGCTGCTTGTTTGATTATCTTGT 59.758 36.000 0.00 0.00 0.00 3.16
107 108 5.706916 ACTGCTGCTTGTTTGATTATCTTG 58.293 37.500 0.00 0.00 0.00 3.02
108 109 5.972107 ACTGCTGCTTGTTTGATTATCTT 57.028 34.783 0.00 0.00 0.00 2.40
110 111 5.586243 TCCTACTGCTGCTTGTTTGATTATC 59.414 40.000 0.00 0.00 0.00 1.75
111 112 5.500234 TCCTACTGCTGCTTGTTTGATTAT 58.500 37.500 0.00 0.00 0.00 1.28
112 113 4.905429 TCCTACTGCTGCTTGTTTGATTA 58.095 39.130 0.00 0.00 0.00 1.75
114 115 3.244700 ACTCCTACTGCTGCTTGTTTGAT 60.245 43.478 0.00 0.00 0.00 2.57
116 117 2.225019 CACTCCTACTGCTGCTTGTTTG 59.775 50.000 0.00 0.00 0.00 2.93
117 118 2.158755 ACACTCCTACTGCTGCTTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
118 119 1.417890 ACACTCCTACTGCTGCTTGTT 59.582 47.619 0.00 0.00 0.00 2.83
119 120 1.051812 ACACTCCTACTGCTGCTTGT 58.948 50.000 0.00 2.63 0.00 3.16
120 121 2.175878 AACACTCCTACTGCTGCTTG 57.824 50.000 0.00 0.00 0.00 4.01
121 122 3.772025 AGATAACACTCCTACTGCTGCTT 59.228 43.478 0.00 0.00 0.00 3.91
123 124 3.383185 AGAGATAACACTCCTACTGCTGC 59.617 47.826 0.00 0.00 37.60 5.25
124 125 4.037446 GGAGAGATAACACTCCTACTGCTG 59.963 50.000 8.89 0.00 45.81 4.41
125 126 4.211920 GGAGAGATAACACTCCTACTGCT 58.788 47.826 8.89 0.00 45.81 4.24
126 127 3.003897 CGGAGAGATAACACTCCTACTGC 59.996 52.174 13.26 0.00 46.64 4.40
127 128 3.566322 CCGGAGAGATAACACTCCTACTG 59.434 52.174 13.26 0.05 46.64 2.74
128 129 3.458857 TCCGGAGAGATAACACTCCTACT 59.541 47.826 13.26 0.00 46.64 2.57
129 130 3.816523 CTCCGGAGAGATAACACTCCTAC 59.183 52.174 28.21 0.00 46.64 3.18
130 131 3.715315 TCTCCGGAGAGATAACACTCCTA 59.285 47.826 30.49 2.53 46.64 2.94
132 133 2.933573 TCTCCGGAGAGATAACACTCC 58.066 52.381 30.49 6.43 44.42 3.85
154 155 2.028020 AGAAGTTTACCCAGCTTCGGAG 60.028 50.000 3.52 0.00 42.28 4.63
156 157 2.347731 GAGAAGTTTACCCAGCTTCGG 58.652 52.381 0.00 0.00 42.28 4.30
157 158 1.993370 CGAGAAGTTTACCCAGCTTCG 59.007 52.381 0.00 0.00 42.28 3.79
158 159 2.737252 CACGAGAAGTTTACCCAGCTTC 59.263 50.000 0.00 0.00 38.97 3.86
159 160 2.104281 ACACGAGAAGTTTACCCAGCTT 59.896 45.455 0.00 0.00 0.00 3.74
160 161 1.692519 ACACGAGAAGTTTACCCAGCT 59.307 47.619 0.00 0.00 0.00 4.24
161 162 1.798813 CACACGAGAAGTTTACCCAGC 59.201 52.381 0.00 0.00 0.00 4.85
162 163 1.798813 GCACACGAGAAGTTTACCCAG 59.201 52.381 0.00 0.00 0.00 4.45
163 164 1.414919 AGCACACGAGAAGTTTACCCA 59.585 47.619 0.00 0.00 0.00 4.51
164 165 2.165319 AGCACACGAGAAGTTTACCC 57.835 50.000 0.00 0.00 0.00 3.69
165 166 2.155155 CGAAGCACACGAGAAGTTTACC 59.845 50.000 0.00 0.00 0.00 2.85
166 167 3.419815 CGAAGCACACGAGAAGTTTAC 57.580 47.619 0.00 0.00 0.00 2.01
182 183 0.102120 AAGAGCAGATCGAGGCGAAG 59.898 55.000 0.00 0.00 39.99 3.79
183 184 0.101399 GAAGAGCAGATCGAGGCGAA 59.899 55.000 0.00 0.00 39.99 4.70
184 185 1.730487 GAAGAGCAGATCGAGGCGA 59.270 57.895 0.00 0.00 41.13 5.54
185 186 1.656875 CGAAGAGCAGATCGAGGCG 60.657 63.158 0.00 0.00 41.43 5.52
186 187 0.869454 CACGAAGAGCAGATCGAGGC 60.869 60.000 11.24 0.00 41.43 4.70
187 188 0.869454 GCACGAAGAGCAGATCGAGG 60.869 60.000 11.24 5.08 45.32 4.63
188 189 1.199229 CGCACGAAGAGCAGATCGAG 61.199 60.000 11.24 5.34 46.65 4.04
189 190 1.226407 CGCACGAAGAGCAGATCGA 60.226 57.895 11.24 0.00 46.65 3.59
190 191 0.593518 ATCGCACGAAGAGCAGATCG 60.594 55.000 0.00 3.88 46.65 3.69
191 192 1.127701 GATCGCACGAAGAGCAGATC 58.872 55.000 0.00 0.00 46.65 2.75
192 193 0.743688 AGATCGCACGAAGAGCAGAT 59.256 50.000 0.00 0.00 46.65 2.90
196 197 1.941734 CGGAGATCGCACGAAGAGC 60.942 63.158 0.00 0.00 41.73 4.09
197 198 4.293694 CGGAGATCGCACGAAGAG 57.706 61.111 0.00 0.00 0.00 2.85
246 247 2.192175 GAACACCTATGGGGCCGG 59.808 66.667 0.00 0.00 39.10 6.13
248 249 1.451387 CACGAACACCTATGGGGCC 60.451 63.158 0.00 0.00 39.10 5.80
249 250 1.451387 CCACGAACACCTATGGGGC 60.451 63.158 0.00 0.00 39.10 5.80
250 251 0.837272 ATCCACGAACACCTATGGGG 59.163 55.000 0.00 0.00 41.89 4.96
251 252 1.484653 TGATCCACGAACACCTATGGG 59.515 52.381 0.00 0.00 38.88 4.00
252 253 2.168521 ACTGATCCACGAACACCTATGG 59.831 50.000 0.00 0.00 0.00 2.74
253 254 3.526931 ACTGATCCACGAACACCTATG 57.473 47.619 0.00 0.00 0.00 2.23
254 255 4.504858 GAAACTGATCCACGAACACCTAT 58.495 43.478 0.00 0.00 0.00 2.57
255 256 3.306502 GGAAACTGATCCACGAACACCTA 60.307 47.826 0.00 0.00 39.42 3.08
256 257 2.550208 GGAAACTGATCCACGAACACCT 60.550 50.000 0.00 0.00 39.42 4.00
257 258 1.804748 GGAAACTGATCCACGAACACC 59.195 52.381 0.00 0.00 39.42 4.16
258 259 1.804748 GGGAAACTGATCCACGAACAC 59.195 52.381 0.00 0.00 41.55 3.32
260 261 1.450025 GGGGAAACTGATCCACGAAC 58.550 55.000 0.00 0.00 41.55 3.95
261 262 0.326927 GGGGGAAACTGATCCACGAA 59.673 55.000 0.00 0.00 44.35 3.85
262 263 1.895020 CGGGGGAAACTGATCCACGA 61.895 60.000 0.00 0.00 44.35 4.35
263 264 1.449601 CGGGGGAAACTGATCCACG 60.450 63.158 0.00 0.00 44.35 4.94
264 265 0.392595 GTCGGGGGAAACTGATCCAC 60.393 60.000 6.59 3.00 42.55 4.02
265 266 0.838554 TGTCGGGGGAAACTGATCCA 60.839 55.000 6.59 0.00 41.55 3.41
270 271 0.250727 ATGTGTGTCGGGGGAAACTG 60.251 55.000 0.00 0.00 0.00 3.16
271 272 0.476771 AATGTGTGTCGGGGGAAACT 59.523 50.000 0.00 0.00 0.00 2.66
272 273 1.324383 AAATGTGTGTCGGGGGAAAC 58.676 50.000 0.00 0.00 0.00 2.78
274 275 3.443145 AATAAATGTGTGTCGGGGGAA 57.557 42.857 0.00 0.00 0.00 3.97
276 277 7.519032 AAATATAATAAATGTGTGTCGGGGG 57.481 36.000 0.00 0.00 0.00 5.40
277 278 9.458374 GAAAAATATAATAAATGTGTGTCGGGG 57.542 33.333 0.00 0.00 0.00 5.73
453 454 2.318908 AGCTTTCCTGCAAATTGTGGA 58.681 42.857 5.93 5.93 34.99 4.02
528 535 8.046708 TCTTAAGAATTGGCTTAGCATACAGAA 58.953 33.333 6.53 0.00 32.42 3.02
539 546 6.133253 AGGTCTCTTCTTAAGAATTGGCTT 57.867 37.500 18.02 9.18 37.02 4.35
673 700 2.378547 TGTTGGGACCTAATCAGCCTTT 59.621 45.455 0.00 0.00 0.00 3.11
758 831 1.065102 CTCTGCCGAGATGCCAAATTG 59.935 52.381 0.00 0.00 39.74 2.32
864 937 0.942962 CATGATGAAGAGCTTCCGCC 59.057 55.000 7.69 0.00 38.77 6.13
866 939 3.264947 TGTTCATGATGAAGAGCTTCCG 58.735 45.455 8.33 0.00 37.00 4.30
1067 3928 4.050553 CCACCACAAAAATAAGTGCAGTG 58.949 43.478 0.00 0.00 34.48 3.66
1150 4011 5.078411 AGATTATATTGGTAGCTCTGGCG 57.922 43.478 0.00 0.00 44.37 5.69
1363 4239 0.603569 GAGGGAGCAACTTCGAGACA 59.396 55.000 0.00 0.00 0.00 3.41
1413 4289 3.663176 CCAGCGCCACACCACTTG 61.663 66.667 2.29 0.00 0.00 3.16
1425 4331 4.760047 AACAGGTAGGCGCCAGCG 62.760 66.667 31.54 19.79 46.35 5.18
1426 4332 3.127533 CAACAGGTAGGCGCCAGC 61.128 66.667 31.54 22.95 44.18 4.85
1427 4333 2.436646 CCAACAGGTAGGCGCCAG 60.437 66.667 31.54 14.95 0.00 4.85
1564 4473 7.632721 CAAAAACAGATGTGATTTTTGGGAAG 58.367 34.615 21.86 6.27 44.18 3.46
1649 4562 4.657013 AGAGAAAACAAATGTCTCCCTCC 58.343 43.478 0.00 0.00 38.89 4.30
1741 4657 7.036996 TGTCAAGCATGTCACAAATTTTCTA 57.963 32.000 0.00 0.00 0.00 2.10
1810 4732 8.964420 TCTCATAATGGTTTCGAAAACAATTC 57.036 30.769 30.61 8.93 39.36 2.17
1841 4770 7.255836 CCTCCACTATGAATAGTTCAATACCGA 60.256 40.741 0.07 0.00 43.95 4.69
1968 4897 5.472137 TCAGTTATCCAACTAACAAAGGCAC 59.528 40.000 0.00 0.00 43.30 5.01
2196 5151 0.798159 TAGCACAACGCAGAGCATTG 59.202 50.000 0.00 0.00 46.13 2.82
2202 5157 2.766313 ACAAGATTAGCACAACGCAGA 58.234 42.857 0.00 0.00 46.13 4.26
2877 5869 2.098770 AGTCGACTTATGCGGGTCTAAC 59.901 50.000 13.58 0.00 0.00 2.34
2897 5889 9.722056 GTGGATTAGCTTAAATTGTATTGACAG 57.278 33.333 0.00 0.00 36.76 3.51
2900 5892 9.679661 TGAGTGGATTAGCTTAAATTGTATTGA 57.320 29.630 0.00 0.00 0.00 2.57
2954 5946 0.654160 GCCCCGCTTCGTATACAAAC 59.346 55.000 3.32 0.00 0.00 2.93
2988 5980 2.158813 TGCTTATAGTTAGGGGTGCAGC 60.159 50.000 7.55 7.55 0.00 5.25
3111 6111 4.522114 TCCCATGCTCGATGTAATTCAAA 58.478 39.130 0.00 0.00 0.00 2.69
3113 6113 3.836365 TCCCATGCTCGATGTAATTCA 57.164 42.857 0.00 0.00 0.00 2.57
3763 7083 4.656112 ACTAGTTGCATCTATGGCTTACCT 59.344 41.667 4.98 0.00 36.63 3.08
3766 7086 5.130311 TGGAACTAGTTGCATCTATGGCTTA 59.870 40.000 24.11 0.00 35.98 3.09
3801 7145 9.802039 ACCTTTTTCAATCAGTAAATAGTACCA 57.198 29.630 0.00 0.00 0.00 3.25
3963 7672 1.905637 TGACCAGACTCGCTACAGAA 58.094 50.000 0.00 0.00 0.00 3.02
3964 7673 1.905637 TTGACCAGACTCGCTACAGA 58.094 50.000 0.00 0.00 0.00 3.41
3972 7681 3.686726 GTGATTGGACATTGACCAGACTC 59.313 47.826 7.87 7.46 38.70 3.36
4177 7886 4.067944 AGAGAGTAATGGGTTGAGGAGT 57.932 45.455 0.00 0.00 0.00 3.85
4250 7959 2.476051 CGTGCGTGGTGAAGATGC 59.524 61.111 0.00 0.00 0.00 3.91
4313 8022 4.122046 CTCATGGTGATGTCGATGCTTAA 58.878 43.478 0.00 0.00 0.00 1.85
4364 8073 8.225416 AGATAGATACCAGTACACTTGTATCCA 58.775 37.037 21.24 13.60 45.42 3.41
4396 8105 5.489792 ACCACTACAGATCTCAAATGTGT 57.510 39.130 0.00 0.00 0.00 3.72
4826 8623 1.268896 ACACAGACGTACCGTGTTCAG 60.269 52.381 10.41 0.00 40.91 3.02
4870 8699 6.073819 GCCTATTTTGCGAAATTTGTGAAGTT 60.074 34.615 17.00 0.00 36.82 2.66
5193 9062 6.730175 TGAATTTGTACACGCAACACTAAAT 58.270 32.000 0.00 0.00 0.00 1.40
5551 9552 2.056577 CAGGTGGTTAACTCGTCGTTC 58.943 52.381 5.42 0.00 37.05 3.95
5778 9794 1.005394 CTTACTTGTGGGCGTCGGT 60.005 57.895 0.00 0.00 0.00 4.69
5788 9804 4.159879 CCTTCTGGACCGATACTTACTTGT 59.840 45.833 0.00 0.00 34.57 3.16
5850 9866 4.341235 AGCTCTGGTATTCATACGTGCTTA 59.659 41.667 0.00 0.00 34.11 3.09
5855 9871 3.735237 CCAGCTCTGGTATTCATACGT 57.265 47.619 7.75 0.00 45.53 3.57
6035 10051 2.440409 AGCATCTGTGGTGGACAAATC 58.560 47.619 0.00 0.00 34.14 2.17
6178 10195 6.918626 TGAAATGAGTGACAAAAGACACAAA 58.081 32.000 0.00 0.00 39.18 2.83
6179 10196 6.150976 ACTGAAATGAGTGACAAAAGACACAA 59.849 34.615 0.00 0.00 39.18 3.33
6192 10209 5.516696 CACTACATACGGACTGAAATGAGTG 59.483 44.000 7.93 10.98 0.00 3.51
6193 10210 5.417894 TCACTACATACGGACTGAAATGAGT 59.582 40.000 7.93 0.00 0.00 3.41
6241 10259 7.414222 ACTACTCCCTTCGTTCACAAATATA 57.586 36.000 0.00 0.00 0.00 0.86
6242 10260 6.295719 ACTACTCCCTTCGTTCACAAATAT 57.704 37.500 0.00 0.00 0.00 1.28
6271 10291 2.154462 CATGTCAAAGCCTCGGAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
6277 10297 2.409870 GGCCCATGTCAAAGCCTCG 61.410 63.158 0.00 0.00 42.34 4.63
6283 10303 0.251742 CCCTTCAGGCCCATGTCAAA 60.252 55.000 0.00 0.00 0.00 2.69
6309 10329 5.874810 TGGTTCAAGCTGAATACTGACATAC 59.125 40.000 0.00 0.00 38.79 2.39
6362 10382 1.523258 ATCTGCTCATGCTGCCGTC 60.523 57.895 0.00 0.00 40.48 4.79
6371 10391 6.205076 GCAATCAATTAGAGTCATCTGCTCAT 59.795 38.462 0.00 0.00 36.96 2.90
6426 10446 9.815936 GGAAAATAAAAATTCTTGCACATTCAG 57.184 29.630 0.00 0.00 0.00 3.02
6464 10484 8.640091 AGAAAGAAAGAAAGAAAGCAATTGAC 57.360 30.769 10.34 0.30 0.00 3.18
6506 10526 7.604164 TGTCATGTCTCTTAGAAGAAACCATTC 59.396 37.037 0.00 0.00 34.03 2.67
6518 10538 8.945481 ATGAAGAAAGATGTCATGTCTCTTAG 57.055 34.615 0.00 0.00 30.84 2.18
6519 10539 9.376075 GAATGAAGAAAGATGTCATGTCTCTTA 57.624 33.333 0.00 0.00 32.38 2.10
6520 10540 7.336427 GGAATGAAGAAAGATGTCATGTCTCTT 59.664 37.037 0.00 0.00 32.38 2.85
6521 10541 6.822676 GGAATGAAGAAAGATGTCATGTCTCT 59.177 38.462 0.00 0.00 32.38 3.10
6522 10542 6.822676 AGGAATGAAGAAAGATGTCATGTCTC 59.177 38.462 0.00 0.00 32.38 3.36
6523 10543 6.719301 AGGAATGAAGAAAGATGTCATGTCT 58.281 36.000 0.00 0.00 32.38 3.41
6524 10544 6.998968 AGGAATGAAGAAAGATGTCATGTC 57.001 37.500 0.00 0.00 32.38 3.06
6609 10633 3.638484 CCACAAAGGCCGTAAAGAAAAG 58.362 45.455 0.00 0.00 0.00 2.27
6700 10729 2.250924 CCTCAATGGTTTTTGGCCTCT 58.749 47.619 3.32 0.00 0.00 3.69
6713 10742 2.183478 TGTACCAGTGCACCTCAATG 57.817 50.000 14.63 4.47 40.23 2.82
6714 10743 3.084039 CAATGTACCAGTGCACCTCAAT 58.916 45.455 14.63 0.00 0.00 2.57
6715 10744 2.503331 CAATGTACCAGTGCACCTCAA 58.497 47.619 14.63 0.00 0.00 3.02
6716 10745 1.271325 CCAATGTACCAGTGCACCTCA 60.271 52.381 14.63 6.37 0.00 3.86
6717 10746 1.003118 TCCAATGTACCAGTGCACCTC 59.997 52.381 14.63 0.32 0.00 3.85
6718 10747 1.064003 TCCAATGTACCAGTGCACCT 58.936 50.000 14.63 0.00 0.00 4.00
6719 10748 2.017049 GATCCAATGTACCAGTGCACC 58.983 52.381 14.63 0.00 0.00 5.01
6720 10749 2.710377 TGATCCAATGTACCAGTGCAC 58.290 47.619 9.40 9.40 0.00 4.57
6721 10750 3.054508 TGATGATCCAATGTACCAGTGCA 60.055 43.478 0.00 0.00 0.00 4.57
6722 10751 3.544684 TGATGATCCAATGTACCAGTGC 58.455 45.455 0.00 0.00 0.00 4.40
6723 10752 7.279536 GCTATATGATGATCCAATGTACCAGTG 59.720 40.741 0.00 0.00 0.00 3.66
6724 10753 7.038088 TGCTATATGATGATCCAATGTACCAGT 60.038 37.037 0.00 0.00 0.00 4.00
6725 10754 7.333323 TGCTATATGATGATCCAATGTACCAG 58.667 38.462 0.00 0.00 0.00 4.00
6726 10755 7.256494 TGCTATATGATGATCCAATGTACCA 57.744 36.000 0.00 0.00 0.00 3.25
6727 10756 9.265901 GTATGCTATATGATGATCCAATGTACC 57.734 37.037 0.00 0.00 0.00 3.34
6730 10759 8.209584 GGAGTATGCTATATGATGATCCAATGT 58.790 37.037 0.00 0.00 0.00 2.71
6731 10760 7.660617 GGGAGTATGCTATATGATGATCCAATG 59.339 40.741 0.00 0.00 0.00 2.82
6732 10761 7.571732 AGGGAGTATGCTATATGATGATCCAAT 59.428 37.037 0.00 0.00 0.00 3.16
6733 10762 6.905215 AGGGAGTATGCTATATGATGATCCAA 59.095 38.462 0.00 0.00 0.00 3.53
6734 10763 6.447326 AGGGAGTATGCTATATGATGATCCA 58.553 40.000 0.00 0.00 0.00 3.41
6735 10764 6.014669 GGAGGGAGTATGCTATATGATGATCC 60.015 46.154 0.00 0.00 0.00 3.36
6736 10765 6.294453 CGGAGGGAGTATGCTATATGATGATC 60.294 46.154 0.00 0.00 0.00 2.92
6737 10766 5.538053 CGGAGGGAGTATGCTATATGATGAT 59.462 44.000 0.00 0.00 0.00 2.45
6738 10767 4.889995 CGGAGGGAGTATGCTATATGATGA 59.110 45.833 0.00 0.00 0.00 2.92
6739 10768 4.646945 ACGGAGGGAGTATGCTATATGATG 59.353 45.833 0.00 0.00 0.00 3.07
6740 10769 4.873010 ACGGAGGGAGTATGCTATATGAT 58.127 43.478 0.00 0.00 0.00 2.45
6741 10770 4.317530 ACGGAGGGAGTATGCTATATGA 57.682 45.455 0.00 0.00 0.00 2.15
6742 10771 4.707448 AGAACGGAGGGAGTATGCTATATG 59.293 45.833 0.00 0.00 0.00 1.78
6743 10772 4.936802 AGAACGGAGGGAGTATGCTATAT 58.063 43.478 0.00 0.00 0.00 0.86
6744 10773 4.383931 AGAACGGAGGGAGTATGCTATA 57.616 45.455 0.00 0.00 0.00 1.31
6745 10774 3.246416 AGAACGGAGGGAGTATGCTAT 57.754 47.619 0.00 0.00 0.00 2.97
6746 10775 2.693591 CAAGAACGGAGGGAGTATGCTA 59.306 50.000 0.00 0.00 0.00 3.49
6747 10776 1.482593 CAAGAACGGAGGGAGTATGCT 59.517 52.381 0.00 0.00 0.00 3.79
6748 10777 1.480954 TCAAGAACGGAGGGAGTATGC 59.519 52.381 0.00 0.00 0.00 3.14
6749 10778 3.887621 TTCAAGAACGGAGGGAGTATG 57.112 47.619 0.00 0.00 0.00 2.39
6750 10779 4.903045 TTTTCAAGAACGGAGGGAGTAT 57.097 40.909 0.00 0.00 0.00 2.12
6751 10780 4.693042 TTTTTCAAGAACGGAGGGAGTA 57.307 40.909 0.00 0.00 0.00 2.59
6752 10781 3.570912 TTTTTCAAGAACGGAGGGAGT 57.429 42.857 0.00 0.00 0.00 3.85
6770 10799 9.150348 CCTTCAACAAAGTTGAAAGTACATTTT 57.850 29.630 21.36 0.00 37.89 1.82
6771 10800 7.763985 CCCTTCAACAAAGTTGAAAGTACATTT 59.236 33.333 21.36 0.00 37.89 2.32
6772 10801 7.093509 ACCCTTCAACAAAGTTGAAAGTACATT 60.094 33.333 21.36 0.00 37.89 2.71
6773 10802 6.379988 ACCCTTCAACAAAGTTGAAAGTACAT 59.620 34.615 21.36 6.33 37.89 2.29
6774 10803 5.712917 ACCCTTCAACAAAGTTGAAAGTACA 59.287 36.000 21.36 3.86 37.89 2.90
6775 10804 6.127842 TGACCCTTCAACAAAGTTGAAAGTAC 60.128 38.462 21.36 14.91 37.89 2.73
6776 10805 5.946972 TGACCCTTCAACAAAGTTGAAAGTA 59.053 36.000 21.36 10.89 37.89 2.24
6777 10806 4.770010 TGACCCTTCAACAAAGTTGAAAGT 59.230 37.500 21.36 20.31 37.89 2.66
6778 10807 5.323371 TGACCCTTCAACAAAGTTGAAAG 57.677 39.130 21.36 16.72 37.89 2.62
6779 10808 5.730296 TTGACCCTTCAACAAAGTTGAAA 57.270 34.783 21.36 7.92 36.79 2.69
6780 10809 5.245075 AGTTTGACCCTTCAACAAAGTTGAA 59.755 36.000 20.27 20.27 41.64 2.69
6781 10810 4.770010 AGTTTGACCCTTCAACAAAGTTGA 59.230 37.500 8.39 8.39 41.64 3.18
6782 10811 5.072040 AGTTTGACCCTTCAACAAAGTTG 57.928 39.130 3.58 3.58 41.64 3.16
6783 10812 6.833933 AGATAGTTTGACCCTTCAACAAAGTT 59.166 34.615 0.00 0.00 41.64 2.66
6784 10813 6.365520 AGATAGTTTGACCCTTCAACAAAGT 58.634 36.000 0.00 0.00 41.64 2.66
6785 10814 6.884280 AGATAGTTTGACCCTTCAACAAAG 57.116 37.500 0.00 0.00 41.64 2.77
6786 10815 8.754991 TTAAGATAGTTTGACCCTTCAACAAA 57.245 30.769 0.00 0.00 41.64 2.83
6787 10816 8.754991 TTTAAGATAGTTTGACCCTTCAACAA 57.245 30.769 0.00 0.00 41.64 2.83
6788 10817 7.996644 ACTTTAAGATAGTTTGACCCTTCAACA 59.003 33.333 0.00 0.00 41.64 3.33
6789 10818 8.392372 ACTTTAAGATAGTTTGACCCTTCAAC 57.608 34.615 0.00 0.00 41.64 3.18
6790 10819 8.990163 AACTTTAAGATAGTTTGACCCTTCAA 57.010 30.769 0.00 0.00 40.14 2.69
6791 10820 8.990163 AAACTTTAAGATAGTTTGACCCTTCA 57.010 30.769 0.00 0.00 42.54 3.02
6805 10834 8.637986 TGCATAAACTTGGTCAAACTTTAAGAT 58.362 29.630 0.00 0.00 0.00 2.40
6806 10835 8.001881 TGCATAAACTTGGTCAAACTTTAAGA 57.998 30.769 0.00 0.00 0.00 2.10
6807 10836 8.641499 TTGCATAAACTTGGTCAAACTTTAAG 57.359 30.769 0.00 0.00 0.00 1.85
6808 10837 9.092876 CTTTGCATAAACTTGGTCAAACTTTAA 57.907 29.630 0.00 0.00 0.00 1.52
6809 10838 8.470805 TCTTTGCATAAACTTGGTCAAACTTTA 58.529 29.630 0.00 0.00 0.00 1.85
6810 10839 7.327214 TCTTTGCATAAACTTGGTCAAACTTT 58.673 30.769 0.00 0.00 0.00 2.66
6811 10840 6.872920 TCTTTGCATAAACTTGGTCAAACTT 58.127 32.000 0.00 0.00 0.00 2.66
6812 10841 6.463995 TCTTTGCATAAACTTGGTCAAACT 57.536 33.333 0.00 0.00 0.00 2.66
6813 10842 8.986477 ATATCTTTGCATAAACTTGGTCAAAC 57.014 30.769 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.