Multiple sequence alignment - TraesCS1B01G081900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G081900 chr1B 100.000 7048 0 0 1 7048 65347249 65354296 0.000000e+00 13016.0
1 TraesCS1B01G081900 chr1D 92.752 6678 279 88 303 6882 45485128 45491698 0.000000e+00 9461.0
2 TraesCS1B01G081900 chr1D 84.358 179 12 8 6771 6936 45498021 45498196 2.030000e-35 161.0
3 TraesCS1B01G081900 chr1D 91.071 56 2 2 6881 6936 45497009 45497061 9.810000e-09 73.1
4 TraesCS1B01G081900 chr1A 92.224 3048 162 36 3877 6882 45545929 45548943 0.000000e+00 4246.0
5 TraesCS1B01G081900 chr1A 92.860 2871 139 28 969 3807 45543088 45545924 0.000000e+00 4106.0
6 TraesCS1B01G081900 chr1A 82.783 424 28 22 252 665 45542196 45542584 3.150000e-88 337.0
7 TraesCS1B01G081900 chr3D 85.204 196 29 0 1415 1610 31443183 31443378 1.200000e-47 202.0
8 TraesCS1B01G081900 chr3A 83.582 201 29 3 1415 1613 51756482 51756284 1.210000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G081900 chr1B 65347249 65354296 7047 False 13016.000000 13016 100.000 1 7048 1 chr1B.!!$F1 7047
1 TraesCS1B01G081900 chr1D 45485128 45491698 6570 False 9461.000000 9461 92.752 303 6882 1 chr1D.!!$F1 6579
2 TraesCS1B01G081900 chr1A 45542196 45548943 6747 False 2896.333333 4246 89.289 252 6882 3 chr1A.!!$F1 6630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 910 0.035056 CCCGCAGAGTCCAATCCTTT 60.035 55.000 0.00 0.0 0.00 3.11 F
892 941 0.040958 CTCGTTGGTTGCTTGTGCTC 60.041 55.000 0.00 0.0 40.48 4.26 F
896 945 0.183492 TTGGTTGCTTGTGCTCTCCT 59.817 50.000 0.00 0.0 40.48 3.69 F
898 947 0.250467 GGTTGCTTGTGCTCTCCTGA 60.250 55.000 0.00 0.0 40.48 3.86 F
2397 2682 0.673437 TGGGCAAAGCAAAGCTGTAC 59.327 50.000 0.00 0.0 39.62 2.90 F
2726 3016 0.099436 GCACAGCCGAATTTGCCTAG 59.901 55.000 0.00 0.0 0.00 3.02 F
2985 3275 0.391661 TGCTCCGAGCCTGTTGAATC 60.392 55.000 17.81 0.0 41.51 2.52 F
4669 4982 1.004394 CTTCCCAGGTTAGTTCACCCC 59.996 57.143 0.00 0.0 37.58 4.95 F
5605 5943 0.321564 CCAACCCGAAGCACTGATCA 60.322 55.000 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2067 1.067706 TGTGCATCAAAATCGGCAAGG 60.068 47.619 0.00 0.00 38.10 3.61 R
2297 2577 1.155424 ACGCAATTCGGTCGTTGTGT 61.155 50.000 6.96 6.96 42.38 3.72 R
2667 2954 1.515521 GGGGGTCAGTGAAAGCAACG 61.516 60.000 0.00 0.00 0.00 4.10 R
2726 3016 2.869192 TGGAAAATTTGCTCCAAAACGC 59.131 40.909 8.83 0.00 38.81 4.84 R
4150 4462 0.469705 TGCATGGGCCAGTTGAGTTT 60.470 50.000 13.78 0.00 40.13 2.66 R
4653 4966 0.328258 CTGGGGGTGAACTAACCTGG 59.672 60.000 0.00 0.00 40.35 4.45 R
4800 5113 2.957680 TGTGTGTGGCTTGATCAACAAT 59.042 40.909 3.38 0.00 37.88 2.71 R
5913 6251 0.035056 ATCCCCTTCAGCTTTGTCCG 60.035 55.000 0.00 0.00 0.00 4.79 R
6821 7201 0.105453 ATCGGAGAGCCTACCCACAT 60.105 55.000 0.00 0.00 43.63 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 9.745880 AGGTACAGATGAATGTATACTAAAACG 57.254 33.333 4.17 0.00 37.93 3.60
95 96 9.525409 GGTACAGATGAATGTATACTAAAACGT 57.475 33.333 4.17 0.00 37.93 3.99
97 98 8.997621 ACAGATGAATGTATACTAAAACGTGT 57.002 30.769 4.17 0.00 0.00 4.49
112 113 9.807649 ACTAAAACGTGTATTAGATAAATCCGT 57.192 29.630 17.80 0.00 34.11 4.69
134 135 9.745880 TCCGTATCTAGATAAGACAACAAATTC 57.254 33.333 22.63 3.42 36.93 2.17
135 136 8.691727 CCGTATCTAGATAAGACAACAAATTCG 58.308 37.037 22.63 13.10 36.93 3.34
136 137 8.691727 CGTATCTAGATAAGACAACAAATTCGG 58.308 37.037 17.80 0.00 36.93 4.30
137 138 9.745880 GTATCTAGATAAGACAACAAATTCGGA 57.254 33.333 14.09 0.00 36.93 4.55
139 140 8.475331 TCTAGATAAGACAACAAATTCGGAAC 57.525 34.615 0.00 0.00 0.00 3.62
140 141 8.092068 TCTAGATAAGACAACAAATTCGGAACA 58.908 33.333 0.00 0.00 0.00 3.18
141 142 7.504924 AGATAAGACAACAAATTCGGAACAA 57.495 32.000 0.00 0.00 0.00 2.83
142 143 8.110860 AGATAAGACAACAAATTCGGAACAAT 57.889 30.769 0.00 0.00 0.00 2.71
143 144 8.237267 AGATAAGACAACAAATTCGGAACAATC 58.763 33.333 0.00 0.00 0.00 2.67
144 145 5.121221 AGACAACAAATTCGGAACAATCC 57.879 39.130 0.00 0.00 42.80 3.01
145 146 4.582656 AGACAACAAATTCGGAACAATCCA 59.417 37.500 0.00 0.00 46.97 3.41
146 147 5.068460 AGACAACAAATTCGGAACAATCCAA 59.932 36.000 0.00 0.00 46.97 3.53
147 148 5.047188 ACAACAAATTCGGAACAATCCAAC 58.953 37.500 0.00 0.00 46.97 3.77
148 149 3.896122 ACAAATTCGGAACAATCCAACG 58.104 40.909 0.00 0.00 46.97 4.10
149 150 3.566322 ACAAATTCGGAACAATCCAACGA 59.434 39.130 0.00 0.00 46.97 3.85
150 151 4.158384 CAAATTCGGAACAATCCAACGAG 58.842 43.478 0.00 0.00 46.97 4.18
151 152 2.536761 TTCGGAACAATCCAACGAGT 57.463 45.000 0.00 0.00 46.97 4.18
152 153 2.536761 TCGGAACAATCCAACGAGTT 57.463 45.000 0.00 0.00 46.97 3.01
153 154 2.841215 TCGGAACAATCCAACGAGTTT 58.159 42.857 0.00 0.00 46.97 2.66
154 155 2.803956 TCGGAACAATCCAACGAGTTTC 59.196 45.455 0.00 0.00 46.97 2.78
155 156 2.546368 CGGAACAATCCAACGAGTTTCA 59.454 45.455 0.00 0.00 46.97 2.69
156 157 3.002862 CGGAACAATCCAACGAGTTTCAA 59.997 43.478 0.00 0.00 46.97 2.69
157 158 4.287720 GGAACAATCCAACGAGTTTCAAC 58.712 43.478 0.00 0.00 45.79 3.18
158 159 4.036380 GGAACAATCCAACGAGTTTCAACT 59.964 41.667 0.00 0.00 45.79 3.16
159 160 5.449999 GGAACAATCCAACGAGTTTCAACTT 60.450 40.000 0.00 0.00 45.79 2.66
160 161 5.576447 ACAATCCAACGAGTTTCAACTTT 57.424 34.783 0.00 0.00 39.88 2.66
161 162 5.961272 ACAATCCAACGAGTTTCAACTTTT 58.039 33.333 0.00 0.00 39.88 2.27
162 163 6.033966 ACAATCCAACGAGTTTCAACTTTTC 58.966 36.000 0.00 0.00 39.88 2.29
163 164 6.127730 ACAATCCAACGAGTTTCAACTTTTCT 60.128 34.615 0.00 0.00 39.88 2.52
164 165 5.479716 TCCAACGAGTTTCAACTTTTCTC 57.520 39.130 0.00 0.00 39.88 2.87
165 166 4.938832 TCCAACGAGTTTCAACTTTTCTCA 59.061 37.500 0.00 0.00 39.88 3.27
166 167 5.413213 TCCAACGAGTTTCAACTTTTCTCAA 59.587 36.000 0.00 0.00 39.88 3.02
167 168 5.511729 CCAACGAGTTTCAACTTTTCTCAAC 59.488 40.000 0.00 0.00 39.88 3.18
168 169 5.873179 ACGAGTTTCAACTTTTCTCAACA 57.127 34.783 0.00 0.00 39.88 3.33
169 170 6.249035 ACGAGTTTCAACTTTTCTCAACAA 57.751 33.333 0.00 0.00 39.88 2.83
170 171 6.084277 ACGAGTTTCAACTTTTCTCAACAAC 58.916 36.000 0.00 0.00 39.88 3.32
171 172 6.083630 CGAGTTTCAACTTTTCTCAACAACA 58.916 36.000 0.00 0.00 39.88 3.33
172 173 6.580791 CGAGTTTCAACTTTTCTCAACAACAA 59.419 34.615 0.00 0.00 39.88 2.83
173 174 7.409343 CGAGTTTCAACTTTTCTCAACAACAAC 60.409 37.037 0.00 0.00 39.88 3.32
174 175 7.206687 AGTTTCAACTTTTCTCAACAACAACA 58.793 30.769 0.00 0.00 35.21 3.33
175 176 7.708752 AGTTTCAACTTTTCTCAACAACAACAA 59.291 29.630 0.00 0.00 35.21 2.83
176 177 8.331742 GTTTCAACTTTTCTCAACAACAACAAA 58.668 29.630 0.00 0.00 0.00 2.83
177 178 8.425577 TTCAACTTTTCTCAACAACAACAAAA 57.574 26.923 0.00 0.00 0.00 2.44
178 179 8.425577 TCAACTTTTCTCAACAACAACAAAAA 57.574 26.923 0.00 0.00 0.00 1.94
236 237 7.425577 AGGTTTAAGAAATGCTTGATTTTGC 57.574 32.000 0.00 0.00 37.42 3.68
237 238 6.991531 AGGTTTAAGAAATGCTTGATTTTGCA 59.008 30.769 0.00 0.00 43.67 4.08
238 239 7.041848 AGGTTTAAGAAATGCTTGATTTTGCAC 60.042 33.333 0.00 0.00 42.26 4.57
239 240 7.254727 GGTTTAAGAAATGCTTGATTTTGCACA 60.255 33.333 0.00 0.00 42.26 4.57
240 241 5.917541 AAGAAATGCTTGATTTTGCACAG 57.082 34.783 0.00 0.00 42.26 3.66
241 242 5.204409 AGAAATGCTTGATTTTGCACAGA 57.796 34.783 0.00 0.00 42.26 3.41
242 243 5.603596 AGAAATGCTTGATTTTGCACAGAA 58.396 33.333 0.00 0.00 42.26 3.02
243 244 5.694910 AGAAATGCTTGATTTTGCACAGAAG 59.305 36.000 0.00 0.00 42.26 2.85
244 245 4.595762 ATGCTTGATTTTGCACAGAAGT 57.404 36.364 0.00 0.00 42.26 3.01
245 246 5.710513 ATGCTTGATTTTGCACAGAAGTA 57.289 34.783 0.00 0.00 42.26 2.24
246 247 5.512753 TGCTTGATTTTGCACAGAAGTAA 57.487 34.783 0.00 0.00 33.94 2.24
247 248 6.088016 TGCTTGATTTTGCACAGAAGTAAT 57.912 33.333 0.00 0.00 33.94 1.89
248 249 6.151691 TGCTTGATTTTGCACAGAAGTAATC 58.848 36.000 0.00 0.00 33.94 1.75
249 250 6.016024 TGCTTGATTTTGCACAGAAGTAATCT 60.016 34.615 0.00 0.00 34.70 2.40
265 266 8.261522 AGAAGTAATCTGGAACTCATTTACTCC 58.738 37.037 0.00 0.00 36.88 3.85
266 267 7.496346 AGTAATCTGGAACTCATTTACTCCA 57.504 36.000 0.00 0.00 33.01 3.86
267 268 7.918076 AGTAATCTGGAACTCATTTACTCCAA 58.082 34.615 0.00 0.00 37.51 3.53
268 269 8.383175 AGTAATCTGGAACTCATTTACTCCAAA 58.617 33.333 0.00 0.00 37.51 3.28
269 270 7.454260 AATCTGGAACTCATTTACTCCAAAC 57.546 36.000 0.00 0.00 37.51 2.93
270 271 5.935945 TCTGGAACTCATTTACTCCAAACA 58.064 37.500 0.00 0.00 37.51 2.83
271 272 5.997746 TCTGGAACTCATTTACTCCAAACAG 59.002 40.000 0.00 0.00 37.51 3.16
272 273 5.935945 TGGAACTCATTTACTCCAAACAGA 58.064 37.500 0.00 0.00 35.02 3.41
279 280 4.411256 TTTACTCCAAACAGAGGACGTT 57.589 40.909 0.00 0.00 38.26 3.99
297 298 3.385111 ACGTTAAAATTCCTGCCCAAACA 59.615 39.130 0.00 0.00 0.00 2.83
365 366 0.250081 GTTGCCGGATCAGATCTCCC 60.250 60.000 5.05 0.00 0.00 4.30
391 398 1.370609 CAGAGGCAAGCATGTCTGAG 58.629 55.000 0.00 0.00 42.93 3.35
396 403 1.300971 GCAAGCATGTCTGAGCCGAA 61.301 55.000 0.00 0.00 0.00 4.30
397 404 0.445436 CAAGCATGTCTGAGCCGAAC 59.555 55.000 0.00 0.00 0.00 3.95
398 405 0.674895 AAGCATGTCTGAGCCGAACC 60.675 55.000 0.00 0.00 0.00 3.62
399 406 1.375908 GCATGTCTGAGCCGAACCA 60.376 57.895 0.00 0.00 0.00 3.67
400 407 0.745845 GCATGTCTGAGCCGAACCAT 60.746 55.000 0.00 0.00 0.00 3.55
401 408 1.293924 CATGTCTGAGCCGAACCATC 58.706 55.000 0.00 0.00 0.00 3.51
411 418 3.490890 GAACCATCGAGGCACAGC 58.509 61.111 0.00 0.00 43.14 4.40
487 518 3.007920 AGACCCAGGAGGCAGCAG 61.008 66.667 0.00 0.00 40.58 4.24
523 554 3.660111 GGCAAGTGTCACCGCACC 61.660 66.667 14.90 2.49 40.04 5.01
566 598 2.436109 CTCACCAACCACCCCCAG 59.564 66.667 0.00 0.00 0.00 4.45
615 654 1.004745 ACCGAGCAAGGATTCACCATT 59.995 47.619 4.39 0.00 42.04 3.16
620 659 1.780503 CAAGGATTCACCATTCCCCC 58.219 55.000 0.00 0.00 42.04 5.40
644 689 1.385153 CCCCATCCCTCCTACCCCTA 61.385 65.000 0.00 0.00 0.00 3.53
649 694 1.143813 TCCCTCCTACCCCTACTACG 58.856 60.000 0.00 0.00 0.00 3.51
664 709 3.033659 ACTACGACCTTCCATCCTGAT 57.966 47.619 0.00 0.00 0.00 2.90
665 710 2.959707 ACTACGACCTTCCATCCTGATC 59.040 50.000 0.00 0.00 0.00 2.92
666 711 2.166907 ACGACCTTCCATCCTGATCT 57.833 50.000 0.00 0.00 0.00 2.75
667 712 2.035632 ACGACCTTCCATCCTGATCTC 58.964 52.381 0.00 0.00 0.00 2.75
668 713 1.342819 CGACCTTCCATCCTGATCTCC 59.657 57.143 0.00 0.00 0.00 3.71
669 714 2.688477 GACCTTCCATCCTGATCTCCT 58.312 52.381 0.00 0.00 0.00 3.69
670 715 2.632512 GACCTTCCATCCTGATCTCCTC 59.367 54.545 0.00 0.00 0.00 3.71
671 716 1.977129 CCTTCCATCCTGATCTCCTCC 59.023 57.143 0.00 0.00 0.00 4.30
672 717 2.427593 CCTTCCATCCTGATCTCCTCCT 60.428 54.545 0.00 0.00 0.00 3.69
673 718 2.692709 TCCATCCTGATCTCCTCCTC 57.307 55.000 0.00 0.00 0.00 3.71
674 719 1.148867 TCCATCCTGATCTCCTCCTCC 59.851 57.143 0.00 0.00 0.00 4.30
675 720 1.149711 CCATCCTGATCTCCTCCTCCT 59.850 57.143 0.00 0.00 0.00 3.69
676 721 2.528564 CATCCTGATCTCCTCCTCCTC 58.471 57.143 0.00 0.00 0.00 3.71
677 722 0.856982 TCCTGATCTCCTCCTCCTCC 59.143 60.000 0.00 0.00 0.00 4.30
678 723 0.859760 CCTGATCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
688 733 3.031013 CCTCCTCCTCCTTCTTCTTCTC 58.969 54.545 0.00 0.00 0.00 2.87
693 738 0.827368 CTCCTTCTTCTTCTCCCCCG 59.173 60.000 0.00 0.00 0.00 5.73
783 828 1.692441 GCATTAATTGCCCTTCCCCCT 60.692 52.381 0.00 0.00 46.15 4.79
808 853 1.677576 GCTCCATCCGCATTGATTCAA 59.322 47.619 0.75 0.75 0.00 2.69
861 910 0.035056 CCCGCAGAGTCCAATCCTTT 60.035 55.000 0.00 0.00 0.00 3.11
883 932 0.821711 TCTTTGGGCCTCGTTGGTTG 60.822 55.000 4.53 0.00 38.35 3.77
884 933 2.420466 CTTTGGGCCTCGTTGGTTGC 62.420 60.000 4.53 0.00 38.35 4.17
886 935 2.597510 GGGCCTCGTTGGTTGCTT 60.598 61.111 0.84 0.00 38.35 3.91
887 936 2.644992 GGCCTCGTTGGTTGCTTG 59.355 61.111 0.00 0.00 38.35 4.01
889 938 1.008538 GCCTCGTTGGTTGCTTGTG 60.009 57.895 0.00 0.00 38.35 3.33
890 939 1.008538 CCTCGTTGGTTGCTTGTGC 60.009 57.895 0.00 0.00 40.20 4.57
891 940 1.447317 CCTCGTTGGTTGCTTGTGCT 61.447 55.000 0.00 0.00 40.48 4.40
892 941 0.040958 CTCGTTGGTTGCTTGTGCTC 60.041 55.000 0.00 0.00 40.48 4.26
893 942 0.463654 TCGTTGGTTGCTTGTGCTCT 60.464 50.000 0.00 0.00 40.48 4.09
894 943 0.040958 CGTTGGTTGCTTGTGCTCTC 60.041 55.000 0.00 0.00 40.48 3.20
895 944 0.312102 GTTGGTTGCTTGTGCTCTCC 59.688 55.000 0.00 0.00 40.48 3.71
896 945 0.183492 TTGGTTGCTTGTGCTCTCCT 59.817 50.000 0.00 0.00 40.48 3.69
897 946 0.535780 TGGTTGCTTGTGCTCTCCTG 60.536 55.000 0.00 0.00 40.48 3.86
898 947 0.250467 GGTTGCTTGTGCTCTCCTGA 60.250 55.000 0.00 0.00 40.48 3.86
899 948 1.612726 GGTTGCTTGTGCTCTCCTGAT 60.613 52.381 0.00 0.00 40.48 2.90
900 949 1.736681 GTTGCTTGTGCTCTCCTGATC 59.263 52.381 0.00 0.00 40.48 2.92
901 950 1.273759 TGCTTGTGCTCTCCTGATCT 58.726 50.000 0.00 0.00 40.48 2.75
902 951 1.066358 TGCTTGTGCTCTCCTGATCTG 60.066 52.381 0.00 0.00 40.48 2.90
903 952 1.066286 GCTTGTGCTCTCCTGATCTGT 60.066 52.381 0.00 0.00 36.03 3.41
914 963 1.003442 TGATCTGTGGAGGGGAGGG 59.997 63.158 0.00 0.00 0.00 4.30
933 982 2.607750 AGGTGATCTGTGGCGGGT 60.608 61.111 0.00 0.00 0.00 5.28
1302 1564 4.394712 GCGGTGGTGGACCTGGAG 62.395 72.222 0.00 0.00 43.55 3.86
1320 1582 3.878519 GACGACGAGGAGAGCGGG 61.879 72.222 0.00 0.00 0.00 6.13
1757 2019 7.272084 CGTTCTGAGCCAAAATCTTAATTTCTG 59.728 37.037 0.00 0.00 33.93 3.02
1798 2065 3.715628 ATGTGCCAAACTGACTGTTTC 57.284 42.857 7.42 0.00 46.11 2.78
1800 2067 2.682856 TGTGCCAAACTGACTGTTTCTC 59.317 45.455 7.42 3.96 46.11 2.87
1806 2073 2.262423 ACTGACTGTTTCTCCTTGCC 57.738 50.000 0.00 0.00 0.00 4.52
1812 2079 3.222603 ACTGTTTCTCCTTGCCGATTTT 58.777 40.909 0.00 0.00 0.00 1.82
1837 2104 3.193157 CACAAATGCTGGAACTTCTCG 57.807 47.619 0.00 0.00 0.00 4.04
1850 2117 2.740452 ACTTCTCGTCTTTTCACCGTC 58.260 47.619 0.00 0.00 0.00 4.79
1854 2121 2.059541 CTCGTCTTTTCACCGTCCTTC 58.940 52.381 0.00 0.00 0.00 3.46
1859 2126 1.071699 CTTTTCACCGTCCTTCCAGGA 59.928 52.381 0.00 0.00 43.43 3.86
1874 2141 8.280258 TCCTTCCAGGATGTTGAATCTATAAT 57.720 34.615 0.00 0.00 40.06 1.28
1990 2257 6.702329 ACCTCCACTTCTCAATTTAGTACAG 58.298 40.000 0.00 0.00 0.00 2.74
1991 2258 5.582665 CCTCCACTTCTCAATTTAGTACAGC 59.417 44.000 0.00 0.00 0.00 4.40
2039 2317 0.882927 GCCGTGTAGTTTGGTGCAGA 60.883 55.000 0.00 0.00 0.00 4.26
2040 2318 1.148310 CCGTGTAGTTTGGTGCAGAG 58.852 55.000 0.00 0.00 0.00 3.35
2041 2319 1.540363 CCGTGTAGTTTGGTGCAGAGT 60.540 52.381 0.00 0.00 0.00 3.24
2042 2320 2.288579 CCGTGTAGTTTGGTGCAGAGTA 60.289 50.000 0.00 0.00 0.00 2.59
2043 2321 2.987149 CGTGTAGTTTGGTGCAGAGTAG 59.013 50.000 0.00 0.00 0.00 2.57
2044 2322 3.552273 CGTGTAGTTTGGTGCAGAGTAGT 60.552 47.826 0.00 0.00 0.00 2.73
2164 2442 1.818785 GCAGCTGAGAGACCATGCC 60.819 63.158 20.43 0.00 0.00 4.40
2297 2577 4.679373 TGCTTTTGATTTTGCTTACCCA 57.321 36.364 0.00 0.00 0.00 4.51
2397 2682 0.673437 TGGGCAAAGCAAAGCTGTAC 59.327 50.000 0.00 0.00 39.62 2.90
2402 2687 4.580580 GGGCAAAGCAAAGCTGTACTATAT 59.419 41.667 0.00 0.00 39.62 0.86
2573 2860 4.046286 TGCTCCTAACATTTGGTTGGAT 57.954 40.909 0.00 0.00 40.14 3.41
2593 2880 9.949174 GTTGGATGAAATTTGCTAAAAATGTTT 57.051 25.926 0.00 0.00 0.00 2.83
2594 2881 9.947669 TTGGATGAAATTTGCTAAAAATGTTTG 57.052 25.926 0.00 0.00 0.00 2.93
2596 2883 8.022550 GGATGAAATTTGCTAAAAATGTTTGGG 58.977 33.333 0.00 0.00 0.00 4.12
2667 2954 4.252878 CATTAAAAGAAATGCCCACACCC 58.747 43.478 0.00 0.00 30.59 4.61
2677 2964 1.826054 CCCACACCCGTTGCTTTCA 60.826 57.895 0.00 0.00 0.00 2.69
2726 3016 0.099436 GCACAGCCGAATTTGCCTAG 59.901 55.000 0.00 0.00 0.00 3.02
2751 3041 5.007528 CGTTTTGGAGCAAATTTTCCACAAT 59.992 36.000 10.54 0.00 42.93 2.71
2981 3271 1.871772 CTTTGCTCCGAGCCTGTTG 59.128 57.895 17.81 0.39 41.51 3.33
2985 3275 0.391661 TGCTCCGAGCCTGTTGAATC 60.392 55.000 17.81 0.00 41.51 2.52
3626 3929 6.348213 CCGTGTTTAACTTGGGATTAGAGTTG 60.348 42.308 0.00 0.00 35.43 3.16
3630 3933 8.215050 TGTTTAACTTGGGATTAGAGTTGAGAA 58.785 33.333 0.00 0.00 35.43 2.87
3644 3947 7.045126 AGAGTTGAGAATACTTCTAATCCCG 57.955 40.000 0.00 0.00 40.87 5.14
3687 3992 5.592688 ACTTGTGTACTGTTTGCCTAATTGT 59.407 36.000 0.00 0.00 0.00 2.71
3690 3995 6.526526 TGTGTACTGTTTGCCTAATTGTCTA 58.473 36.000 0.00 0.00 0.00 2.59
3761 4071 6.094193 TGACCATACATTGCATTGTGAAAA 57.906 33.333 21.45 4.68 0.00 2.29
3763 4073 6.590677 TGACCATACATTGCATTGTGAAAATG 59.409 34.615 21.45 16.33 36.35 2.32
3770 4080 3.729966 TGCATTGTGAAAATGTGTGCAT 58.270 36.364 0.00 0.00 36.33 3.96
3789 4099 5.575606 GTGCATAGTAAGTAAAGTCTTGCGA 59.424 40.000 0.00 0.00 35.71 5.10
3858 4168 3.467043 TCGAACTTCGAAGTCGGTG 57.533 52.632 31.05 22.07 46.90 4.94
3894 4204 1.521749 CGCTATTCGTCACTCGTCGC 61.522 60.000 0.00 0.00 40.80 5.19
3932 4242 4.785914 TGGGTGATTTAGTCTATTCCCACA 59.214 41.667 0.00 0.00 38.70 4.17
4004 4314 4.521536 TCCATGCCTAGTGTCTAGTAGT 57.478 45.455 0.00 0.00 0.00 2.73
4010 4320 4.015084 GCCTAGTGTCTAGTAGTGTGGAA 58.985 47.826 0.00 0.00 0.00 3.53
4011 4321 4.645588 GCCTAGTGTCTAGTAGTGTGGAAT 59.354 45.833 0.00 0.00 0.00 3.01
4012 4322 5.826737 GCCTAGTGTCTAGTAGTGTGGAATA 59.173 44.000 0.00 0.00 0.00 1.75
4013 4323 6.320672 GCCTAGTGTCTAGTAGTGTGGAATAA 59.679 42.308 0.00 0.00 0.00 1.40
4014 4324 7.681543 GCCTAGTGTCTAGTAGTGTGGAATAAC 60.682 44.444 0.00 0.00 0.00 1.89
4015 4325 7.556996 CCTAGTGTCTAGTAGTGTGGAATAACT 59.443 40.741 0.00 0.00 0.00 2.24
4016 4326 7.159322 AGTGTCTAGTAGTGTGGAATAACTG 57.841 40.000 0.00 0.00 0.00 3.16
4017 4327 6.946583 AGTGTCTAGTAGTGTGGAATAACTGA 59.053 38.462 0.00 0.00 0.00 3.41
4019 4329 6.946583 TGTCTAGTAGTGTGGAATAACTGAGT 59.053 38.462 0.00 0.00 0.00 3.41
4043 4354 9.032624 AGTGGAAGTTTTAGAATACTAGCTGTA 57.967 33.333 0.00 0.00 35.37 2.74
4044 4355 9.303537 GTGGAAGTTTTAGAATACTAGCTGTAG 57.696 37.037 0.00 0.00 34.24 2.74
4054 4365 6.493115 AGAATACTAGCTGTAGTCATGATGCT 59.507 38.462 18.92 6.98 45.51 3.79
4059 4370 4.190001 AGCTGTAGTCATGATGCTTTCAG 58.810 43.478 0.00 6.33 37.89 3.02
4094 4405 3.585289 TGGAAGGTGTGCTAATGGAGTTA 59.415 43.478 0.00 0.00 0.00 2.24
4117 4428 5.389859 TGGCCACATATCTTTTCTTGTTG 57.610 39.130 0.00 0.00 0.00 3.33
4284 4597 9.143155 TGAGGTTGATATAATCACAGCTAACTA 57.857 33.333 0.00 0.00 39.39 2.24
4333 4646 9.424319 ACTAGTGGATGATATTTACTTAATGCG 57.576 33.333 0.00 0.00 0.00 4.73
4407 4720 2.742372 GTGGCAACGATGTCCGCT 60.742 61.111 10.78 0.00 43.32 5.52
4419 4732 1.807573 GTCCGCTGGCGAGAAGAAG 60.808 63.158 16.79 0.00 42.83 2.85
4428 4741 1.135053 GGCGAGAAGAAGGTAGTGGTC 60.135 57.143 0.00 0.00 0.00 4.02
4446 4759 3.958860 GAGGGCCCACTGTGCAGT 61.959 66.667 27.56 0.00 43.61 4.40
4581 4894 3.181466 CCCACACAATCGATGTATCAGGA 60.181 47.826 0.00 0.00 41.46 3.86
4620 4933 2.690653 TTTTGTGGGACCCTGAGCGG 62.691 60.000 13.00 0.00 0.00 5.52
4653 4966 1.067354 ACGTCATTACCGGACACTTCC 60.067 52.381 9.46 0.00 38.77 3.46
4667 4980 2.105993 ACACTTCCCAGGTTAGTTCACC 59.894 50.000 0.00 0.00 37.04 4.02
4669 4982 1.004394 CTTCCCAGGTTAGTTCACCCC 59.996 57.143 0.00 0.00 37.58 4.95
4734 5047 9.553064 AATGTACAAAACAAGCCATTTTCATAA 57.447 25.926 0.00 0.00 42.70 1.90
4800 5113 3.421919 TCTCTGATTGGCACATCACAA 57.578 42.857 7.85 0.00 39.30 3.33
4811 5124 4.038883 TGGCACATCACAATTGTTGATCAA 59.961 37.500 15.51 3.38 40.53 2.57
4823 5136 2.957680 TGTTGATCAAGCCACACACAAT 59.042 40.909 8.80 0.00 0.00 2.71
4849 5162 3.906720 AGTAATAGGACCACGCATTGT 57.093 42.857 0.00 0.00 0.00 2.71
4988 5301 5.008415 CCTGATCTCATGACAGCCAAATAAC 59.992 44.000 6.34 0.00 0.00 1.89
5008 5321 2.224113 ACAAACCTCCGAAACTAGCGAA 60.224 45.455 0.00 0.00 0.00 4.70
5059 5372 3.129988 GCATGTCCAGCTTAAAGCAGATT 59.870 43.478 0.00 0.00 45.56 2.40
5126 5440 7.506296 AAAACTCGAAATTTCACAAGTCAAC 57.494 32.000 17.99 0.00 0.00 3.18
5134 5448 7.535258 CGAAATTTCACAAGTCAACCTGATAAG 59.465 37.037 17.99 0.00 0.00 1.73
5136 5450 8.641498 AATTTCACAAGTCAACCTGATAAGAT 57.359 30.769 0.00 0.00 0.00 2.40
5138 5452 8.777865 TTTCACAAGTCAACCTGATAAGATAG 57.222 34.615 0.00 0.00 0.00 2.08
5144 5467 7.106439 AGTCAACCTGATAAGATAGTGTCAG 57.894 40.000 0.00 0.00 38.20 3.51
5169 5492 1.527433 GGAAGGCCACTTGCAGTTCC 61.527 60.000 5.01 2.44 43.70 3.62
5171 5494 0.825010 AAGGCCACTTGCAGTTCCAG 60.825 55.000 5.01 0.00 43.89 3.86
5197 5520 4.961438 AAAAATGCTGTCCACCATTCTT 57.039 36.364 0.00 0.00 31.67 2.52
5198 5521 3.947910 AAATGCTGTCCACCATTCTTG 57.052 42.857 0.00 0.00 31.67 3.02
5208 5531 7.537596 TGTCCACCATTCTTGTAAAAATGAT 57.462 32.000 0.00 0.00 35.35 2.45
5241 5569 3.732212 ACCACGGTACTTTTCAAGGTAC 58.268 45.455 3.88 3.88 37.97 3.34
5243 5571 4.588528 ACCACGGTACTTTTCAAGGTACTA 59.411 41.667 10.71 0.00 38.49 1.82
5248 5576 9.206870 CACGGTACTTTTCAAGGTACTAATAAA 57.793 33.333 10.71 0.00 38.49 1.40
5279 5607 3.128764 GCTGAAGGGGTAAGTAATGTTGC 59.871 47.826 0.00 0.00 0.00 4.17
5311 5639 1.287442 TCTGCTCCTGATCTCCTCACT 59.713 52.381 0.00 0.00 0.00 3.41
5327 5655 5.584913 TCCTCACTCCTGAGATATTATCCC 58.415 45.833 0.22 0.00 46.32 3.85
5350 5678 0.539438 TGAATTCACTGCCCGGCTTT 60.539 50.000 11.61 0.00 0.00 3.51
5420 5748 2.778299 TGATCAACTTCCCTTCAACGG 58.222 47.619 0.00 0.00 0.00 4.44
5499 5827 7.861630 TCCTTTTTCTTAAACTTGTGATCTCG 58.138 34.615 0.00 0.00 0.00 4.04
5504 5832 6.780706 TCTTAAACTTGTGATCTCGGTTTC 57.219 37.500 16.35 0.00 33.18 2.78
5505 5833 5.404366 TCTTAAACTTGTGATCTCGGTTTCG 59.596 40.000 16.35 11.69 33.18 3.46
5506 5834 2.814280 ACTTGTGATCTCGGTTTCGT 57.186 45.000 0.00 0.00 37.69 3.85
5510 5847 1.001048 TGTGATCTCGGTTTCGTTCGT 60.001 47.619 0.00 0.00 37.69 3.85
5527 5864 0.450583 CGTCTCACCTACTTAGCGCA 59.549 55.000 11.47 0.00 0.00 6.09
5591 5929 1.241315 ATGCGCCACTACAACCAACC 61.241 55.000 4.18 0.00 0.00 3.77
5605 5943 0.321564 CCAACCCGAAGCACTGATCA 60.322 55.000 0.00 0.00 0.00 2.92
5647 5985 3.382832 ACTTCGGTCCCTCTGCGG 61.383 66.667 0.00 0.00 0.00 5.69
5718 6056 2.224257 CCCAAATTTCCAACCACCACAG 60.224 50.000 0.00 0.00 0.00 3.66
5734 6072 1.067974 CACAGTGCATTGGGCCATATG 59.932 52.381 7.26 14.99 43.89 1.78
5752 6090 7.330208 GGCCATATGCAAGAAGCTAATAATTTG 59.670 37.037 0.00 0.00 45.94 2.32
5775 6113 4.755123 GCTTAGAACTGAACTGCTACCAAA 59.245 41.667 0.00 0.00 0.00 3.28
5797 6135 1.699083 TGGTCCAGTGCTCATCTTTCA 59.301 47.619 0.00 0.00 0.00 2.69
5801 6139 4.219288 GGTCCAGTGCTCATCTTTCATTTT 59.781 41.667 0.00 0.00 0.00 1.82
5837 6175 5.936956 GGACTGATTCTCCCAGCTAATAATG 59.063 44.000 0.00 0.00 35.14 1.90
5867 6205 3.765511 CTCTTTTCCCTTGGCATGATTGA 59.234 43.478 0.00 0.00 0.00 2.57
5894 6232 2.158449 GGACTCGATCAAGTTTGTGCAG 59.842 50.000 0.00 0.00 0.00 4.41
6022 6360 0.978667 AAAACCAAAACCGCCACCCT 60.979 50.000 0.00 0.00 0.00 4.34
6085 6423 6.484643 TGAGACTGAACAGGAGAAAAATCTTG 59.515 38.462 6.76 0.00 32.83 3.02
6141 6483 6.320494 TGTAAGTAAATGTGGCGAAAACAT 57.680 33.333 0.00 0.00 39.95 2.71
6175 6517 0.881796 GGAAGGTTGCTGCTTACACC 59.118 55.000 0.00 2.09 0.00 4.16
6176 6518 1.604604 GAAGGTTGCTGCTTACACCA 58.395 50.000 0.00 0.00 0.00 4.17
6357 6713 0.319125 GGTGATCTCTCGCGGATTCC 60.319 60.000 6.13 4.95 32.43 3.01
6465 6824 4.322650 GGGTTTCCAGCAAATTTCAGCATA 60.323 41.667 3.62 0.00 0.00 3.14
6468 6827 6.347644 GGTTTCCAGCAAATTTCAGCATAAAC 60.348 38.462 3.62 8.94 32.76 2.01
6482 6841 3.815401 AGCATAAACTGAACTGTTTCGCT 59.185 39.130 18.55 18.55 40.63 4.93
6484 6843 4.976116 GCATAAACTGAACTGTTTCGCTTT 59.024 37.500 11.75 0.00 40.23 3.51
6487 6846 5.761818 AAACTGAACTGTTTCGCTTTTTG 57.238 34.783 0.00 0.00 35.50 2.44
6493 6852 6.358762 TGAACTGTTTCGCTTTTTGTTTTTG 58.641 32.000 0.00 0.00 34.04 2.44
6649 7014 0.106708 TGAATGCGCCCAGATCTACC 59.893 55.000 4.18 0.00 0.00 3.18
6692 7057 2.859165 TTGGAGTTGGAGCTGGTTAG 57.141 50.000 0.00 0.00 0.00 2.34
6765 7130 2.598394 GCAGCCCAGCAAAGTCCA 60.598 61.111 0.00 0.00 0.00 4.02
6774 7139 3.094572 CCAGCAAAGTCCAATTCCTGAT 58.905 45.455 0.00 0.00 0.00 2.90
6779 7144 4.219288 GCAAAGTCCAATTCCTGATTGACT 59.781 41.667 0.56 0.00 46.59 3.41
6781 7146 5.511386 AAGTCCAATTCCTGATTGACTCT 57.489 39.130 0.56 0.00 46.59 3.24
6806 7186 1.939597 CTGACTGTGCTGTGCTGTG 59.060 57.895 0.00 0.00 0.00 3.66
6807 7187 2.114331 CTGACTGTGCTGTGCTGTGC 62.114 60.000 0.00 0.00 0.00 4.57
6808 7188 2.124612 ACTGTGCTGTGCTGTGCA 60.125 55.556 0.00 0.00 36.79 4.57
6829 7209 0.177836 CTGGTGCATCGATGTGGGTA 59.822 55.000 25.47 8.87 0.00 3.69
6834 7214 0.601311 GCATCGATGTGGGTAGGCTC 60.601 60.000 25.47 2.11 0.00 4.70
6837 7217 0.755698 TCGATGTGGGTAGGCTCTCC 60.756 60.000 0.00 0.00 0.00 3.71
6882 7262 3.509442 AGCCATCCCTGTGAAATGAAAA 58.491 40.909 0.00 0.00 0.00 2.29
6883 7263 3.903090 AGCCATCCCTGTGAAATGAAAAA 59.097 39.130 0.00 0.00 0.00 1.94
6884 7264 3.996363 GCCATCCCTGTGAAATGAAAAAC 59.004 43.478 0.00 0.00 0.00 2.43
6885 7265 4.568956 CCATCCCTGTGAAATGAAAAACC 58.431 43.478 0.00 0.00 0.00 3.27
6886 7266 4.563374 CCATCCCTGTGAAATGAAAAACCC 60.563 45.833 0.00 0.00 0.00 4.11
6887 7267 3.922375 TCCCTGTGAAATGAAAAACCCT 58.078 40.909 0.00 0.00 0.00 4.34
6888 7268 3.895041 TCCCTGTGAAATGAAAAACCCTC 59.105 43.478 0.00 0.00 0.00 4.30
6889 7269 3.897505 CCCTGTGAAATGAAAAACCCTCT 59.102 43.478 0.00 0.00 0.00 3.69
6890 7270 4.344968 CCCTGTGAAATGAAAAACCCTCTT 59.655 41.667 0.00 0.00 0.00 2.85
6891 7271 5.163311 CCCTGTGAAATGAAAAACCCTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
6892 7272 5.754890 CCTGTGAAATGAAAAACCCTCTTTG 59.245 40.000 0.00 0.00 0.00 2.77
6893 7273 5.669477 TGTGAAATGAAAAACCCTCTTTGG 58.331 37.500 0.00 0.00 0.00 3.28
6894 7274 5.188751 TGTGAAATGAAAAACCCTCTTTGGT 59.811 36.000 0.00 0.00 41.55 3.67
6902 7282 2.292828 ACCCTCTTTGGTTCACATGG 57.707 50.000 0.00 0.00 33.91 3.66
6903 7283 1.499007 ACCCTCTTTGGTTCACATGGT 59.501 47.619 0.00 0.00 33.91 3.55
6904 7284 2.091333 ACCCTCTTTGGTTCACATGGTT 60.091 45.455 0.00 0.00 33.91 3.67
6905 7285 2.965147 CCCTCTTTGGTTCACATGGTTT 59.035 45.455 0.00 0.00 0.00 3.27
6906 7286 3.387699 CCCTCTTTGGTTCACATGGTTTT 59.612 43.478 0.00 0.00 0.00 2.43
6907 7287 4.501400 CCCTCTTTGGTTCACATGGTTTTC 60.501 45.833 0.00 0.00 0.00 2.29
6908 7288 4.501400 CCTCTTTGGTTCACATGGTTTTCC 60.501 45.833 0.00 0.00 41.14 3.13
6909 7289 4.285863 TCTTTGGTTCACATGGTTTTCCT 58.714 39.130 0.00 0.00 41.38 3.36
6910 7290 4.099266 TCTTTGGTTCACATGGTTTTCCTG 59.901 41.667 0.00 0.00 41.38 3.86
6911 7291 2.315176 TGGTTCACATGGTTTTCCTGG 58.685 47.619 0.00 0.00 41.38 4.45
6912 7292 2.316108 GGTTCACATGGTTTTCCTGGT 58.684 47.619 0.00 0.00 41.38 4.00
6913 7293 3.117474 TGGTTCACATGGTTTTCCTGGTA 60.117 43.478 0.00 0.00 41.38 3.25
6914 7294 3.506067 GGTTCACATGGTTTTCCTGGTAG 59.494 47.826 0.00 0.00 41.38 3.18
6915 7295 4.142038 GTTCACATGGTTTTCCTGGTAGT 58.858 43.478 0.00 0.00 41.38 2.73
6916 7296 5.310451 GTTCACATGGTTTTCCTGGTAGTA 58.690 41.667 0.00 0.00 41.38 1.82
6917 7297 5.160607 TCACATGGTTTTCCTGGTAGTAG 57.839 43.478 0.00 0.00 41.38 2.57
6918 7298 3.689649 CACATGGTTTTCCTGGTAGTAGC 59.310 47.826 0.00 0.00 41.38 3.58
6919 7299 3.329520 ACATGGTTTTCCTGGTAGTAGCA 59.670 43.478 1.44 1.44 41.38 3.49
6920 7300 4.202524 ACATGGTTTTCCTGGTAGTAGCAA 60.203 41.667 3.25 0.00 41.38 3.91
6921 7301 4.650972 TGGTTTTCCTGGTAGTAGCAAT 57.349 40.909 3.25 0.00 41.38 3.56
6922 7302 4.993028 TGGTTTTCCTGGTAGTAGCAATT 58.007 39.130 3.25 0.00 41.38 2.32
6923 7303 6.129414 TGGTTTTCCTGGTAGTAGCAATTA 57.871 37.500 3.25 0.00 41.38 1.40
6924 7304 6.727394 TGGTTTTCCTGGTAGTAGCAATTAT 58.273 36.000 3.25 0.00 41.38 1.28
6925 7305 6.601613 TGGTTTTCCTGGTAGTAGCAATTATG 59.398 38.462 3.25 0.00 41.38 1.90
6926 7306 6.039382 GGTTTTCCTGGTAGTAGCAATTATGG 59.961 42.308 3.25 1.13 36.94 2.74
6927 7307 6.569127 TTTCCTGGTAGTAGCAATTATGGA 57.431 37.500 3.25 3.55 0.00 3.41
6928 7308 5.808366 TCCTGGTAGTAGCAATTATGGAG 57.192 43.478 3.25 0.00 0.00 3.86
6929 7309 4.593206 TCCTGGTAGTAGCAATTATGGAGG 59.407 45.833 3.25 0.00 0.00 4.30
6930 7310 4.593206 CCTGGTAGTAGCAATTATGGAGGA 59.407 45.833 3.25 0.00 0.00 3.71
6931 7311 5.249393 CCTGGTAGTAGCAATTATGGAGGAT 59.751 44.000 3.25 0.00 0.00 3.24
6932 7312 6.360370 TGGTAGTAGCAATTATGGAGGATC 57.640 41.667 0.00 0.00 0.00 3.36
6933 7313 5.843969 TGGTAGTAGCAATTATGGAGGATCA 59.156 40.000 0.00 0.00 36.25 2.92
6934 7314 6.328934 TGGTAGTAGCAATTATGGAGGATCAA 59.671 38.462 0.00 0.00 36.25 2.57
6935 7315 7.147391 TGGTAGTAGCAATTATGGAGGATCAAA 60.147 37.037 0.00 0.00 36.25 2.69
6936 7316 7.173390 GGTAGTAGCAATTATGGAGGATCAAAC 59.827 40.741 0.00 0.00 36.25 2.93
6937 7317 6.064717 AGTAGCAATTATGGAGGATCAAACC 58.935 40.000 0.00 0.00 36.25 3.27
6938 7318 5.134725 AGCAATTATGGAGGATCAAACCT 57.865 39.130 0.00 0.00 43.64 3.50
6939 7319 5.522641 AGCAATTATGGAGGATCAAACCTT 58.477 37.500 0.00 0.00 40.73 3.50
6940 7320 5.595952 AGCAATTATGGAGGATCAAACCTTC 59.404 40.000 0.00 0.00 40.73 3.46
6941 7321 5.221322 GCAATTATGGAGGATCAAACCTTCC 60.221 44.000 0.00 0.00 40.73 3.46
6942 7322 2.717639 ATGGAGGATCAAACCTTCCG 57.282 50.000 0.00 0.00 40.73 4.30
6943 7323 1.651737 TGGAGGATCAAACCTTCCGA 58.348 50.000 0.00 0.00 40.73 4.55
6944 7324 1.982226 TGGAGGATCAAACCTTCCGAA 59.018 47.619 0.00 0.00 40.73 4.30
6945 7325 2.576191 TGGAGGATCAAACCTTCCGAAT 59.424 45.455 0.00 0.00 40.73 3.34
6946 7326 3.010138 TGGAGGATCAAACCTTCCGAATT 59.990 43.478 0.00 0.00 40.73 2.17
6947 7327 4.017126 GGAGGATCAAACCTTCCGAATTT 58.983 43.478 0.00 0.00 40.73 1.82
6948 7328 4.462834 GGAGGATCAAACCTTCCGAATTTT 59.537 41.667 0.00 0.00 40.73 1.82
6949 7329 5.047306 GGAGGATCAAACCTTCCGAATTTTT 60.047 40.000 0.00 0.00 40.73 1.94
6973 7353 6.509418 TTTATGGAGGATCAAAAACCTTCG 57.491 37.500 0.00 0.00 36.57 3.79
6974 7354 3.780804 TGGAGGATCAAAAACCTTCGA 57.219 42.857 0.00 0.00 36.57 3.71
6975 7355 4.093472 TGGAGGATCAAAAACCTTCGAA 57.907 40.909 0.00 0.00 36.57 3.71
6976 7356 4.465886 TGGAGGATCAAAAACCTTCGAAA 58.534 39.130 0.00 0.00 36.57 3.46
6977 7357 5.076873 TGGAGGATCAAAAACCTTCGAAAT 58.923 37.500 0.00 0.00 36.57 2.17
6978 7358 5.538433 TGGAGGATCAAAAACCTTCGAAATT 59.462 36.000 0.00 0.00 36.57 1.82
6979 7359 6.041523 TGGAGGATCAAAAACCTTCGAAATTT 59.958 34.615 0.00 0.02 36.57 1.82
6980 7360 6.929049 GGAGGATCAAAAACCTTCGAAATTTT 59.071 34.615 11.97 11.97 36.57 1.82
6981 7361 7.116376 GGAGGATCAAAAACCTTCGAAATTTTC 59.884 37.037 16.14 0.00 36.57 2.29
6982 7362 6.929049 AGGATCAAAAACCTTCGAAATTTTCC 59.071 34.615 16.14 13.69 31.95 3.13
6983 7363 6.147164 GGATCAAAAACCTTCGAAATTTTCCC 59.853 38.462 16.14 12.35 0.00 3.97
6984 7364 5.978814 TCAAAAACCTTCGAAATTTTCCCA 58.021 33.333 16.14 5.18 0.00 4.37
6985 7365 6.045955 TCAAAAACCTTCGAAATTTTCCCAG 58.954 36.000 16.14 9.60 0.00 4.45
6986 7366 5.607939 AAAACCTTCGAAATTTTCCCAGT 57.392 34.783 11.97 0.00 0.00 4.00
6987 7367 5.607939 AAACCTTCGAAATTTTCCCAGTT 57.392 34.783 0.00 0.86 0.00 3.16
6988 7368 6.718522 AAACCTTCGAAATTTTCCCAGTTA 57.281 33.333 0.00 0.00 0.00 2.24
6989 7369 5.700722 ACCTTCGAAATTTTCCCAGTTAC 57.299 39.130 0.00 0.00 0.00 2.50
6990 7370 5.382616 ACCTTCGAAATTTTCCCAGTTACT 58.617 37.500 0.00 0.00 0.00 2.24
6991 7371 6.536447 ACCTTCGAAATTTTCCCAGTTACTA 58.464 36.000 0.00 0.00 0.00 1.82
6992 7372 6.653740 ACCTTCGAAATTTTCCCAGTTACTAG 59.346 38.462 0.00 0.00 0.00 2.57
6993 7373 6.093633 CCTTCGAAATTTTCCCAGTTACTAGG 59.906 42.308 0.00 0.00 0.00 3.02
6994 7374 6.363167 TCGAAATTTTCCCAGTTACTAGGA 57.637 37.500 0.00 0.00 0.00 2.94
6995 7375 6.168389 TCGAAATTTTCCCAGTTACTAGGAC 58.832 40.000 0.00 0.00 0.00 3.85
6996 7376 6.013984 TCGAAATTTTCCCAGTTACTAGGACT 60.014 38.462 0.00 0.00 0.00 3.85
6997 7377 6.092259 CGAAATTTTCCCAGTTACTAGGACTG 59.908 42.308 17.14 17.14 43.19 3.51
7017 7397 7.289310 GGACTGGATCCTACTATATAGTACCC 58.711 46.154 17.03 14.98 45.22 3.69
7018 7398 7.223472 ACTGGATCCTACTATATAGTACCCC 57.777 44.000 17.03 14.71 37.73 4.95
7019 7399 6.161883 ACTGGATCCTACTATATAGTACCCCC 59.838 46.154 17.03 14.98 37.73 5.40
7020 7400 6.293784 TGGATCCTACTATATAGTACCCCCT 58.706 44.000 17.03 2.91 37.73 4.79
7021 7401 6.392245 TGGATCCTACTATATAGTACCCCCTC 59.608 46.154 17.03 10.12 37.73 4.30
7022 7402 6.183361 GGATCCTACTATATAGTACCCCCTCC 60.183 50.000 17.03 14.07 37.73 4.30
7023 7403 4.723789 TCCTACTATATAGTACCCCCTCCG 59.276 50.000 17.03 6.55 37.73 4.63
7024 7404 4.476479 CCTACTATATAGTACCCCCTCCGT 59.524 50.000 17.03 0.00 37.73 4.69
7025 7405 4.582973 ACTATATAGTACCCCCTCCGTC 57.417 50.000 13.88 0.00 34.13 4.79
7026 7406 2.915657 ATATAGTACCCCCTCCGTCC 57.084 55.000 0.00 0.00 0.00 4.79
7027 7407 0.779997 TATAGTACCCCCTCCGTCCC 59.220 60.000 0.00 0.00 0.00 4.46
7028 7408 1.298906 ATAGTACCCCCTCCGTCCCA 61.299 60.000 0.00 0.00 0.00 4.37
7029 7409 1.517538 TAGTACCCCCTCCGTCCCAA 61.518 60.000 0.00 0.00 0.00 4.12
7030 7410 2.039951 TACCCCCTCCGTCCCAAG 59.960 66.667 0.00 0.00 0.00 3.61
7034 7414 4.452733 CCCTCCGTCCCAAGCGTC 62.453 72.222 0.00 0.00 0.00 5.19
7035 7415 3.382832 CCTCCGTCCCAAGCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
7036 7416 2.657237 CTCCGTCCCAAGCGTCTT 59.343 61.111 0.00 0.00 0.00 3.01
7037 7417 1.601419 CCTCCGTCCCAAGCGTCTTA 61.601 60.000 0.00 0.00 0.00 2.10
7038 7418 0.458025 CTCCGTCCCAAGCGTCTTAC 60.458 60.000 0.00 0.00 0.00 2.34
7039 7419 1.180456 TCCGTCCCAAGCGTCTTACA 61.180 55.000 0.00 0.00 0.00 2.41
7040 7420 0.108329 CCGTCCCAAGCGTCTTACAT 60.108 55.000 0.00 0.00 0.00 2.29
7041 7421 1.674817 CCGTCCCAAGCGTCTTACATT 60.675 52.381 0.00 0.00 0.00 2.71
7042 7422 2.417651 CCGTCCCAAGCGTCTTACATTA 60.418 50.000 0.00 0.00 0.00 1.90
7043 7423 3.454375 CGTCCCAAGCGTCTTACATTAT 58.546 45.455 0.00 0.00 0.00 1.28
7044 7424 3.245284 CGTCCCAAGCGTCTTACATTATG 59.755 47.826 0.00 0.00 0.00 1.90
7045 7425 3.560068 GTCCCAAGCGTCTTACATTATGG 59.440 47.826 0.00 0.00 0.00 2.74
7046 7426 2.878406 CCCAAGCGTCTTACATTATGGG 59.122 50.000 0.00 0.00 40.23 4.00
7047 7427 3.804036 CCAAGCGTCTTACATTATGGGA 58.196 45.455 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.745880 CGTTTTAGTATACATTCATCTGTACCT 57.254 33.333 5.50 0.00 34.59 3.08
69 70 9.525409 ACGTTTTAGTATACATTCATCTGTACC 57.475 33.333 5.50 0.00 34.59 3.34
72 73 8.997621 ACACGTTTTAGTATACATTCATCTGT 57.002 30.769 5.50 0.00 0.00 3.41
86 87 9.807649 ACGGATTTATCTAATACACGTTTTAGT 57.192 29.630 7.11 0.00 31.40 2.24
108 109 9.745880 GAATTTGTTGTCTTATCTAGATACGGA 57.254 33.333 12.12 10.48 34.79 4.69
109 110 8.691727 CGAATTTGTTGTCTTATCTAGATACGG 58.308 37.037 12.12 8.44 34.79 4.02
110 111 8.691727 CCGAATTTGTTGTCTTATCTAGATACG 58.308 37.037 12.12 10.67 34.79 3.06
111 112 9.745880 TCCGAATTTGTTGTCTTATCTAGATAC 57.254 33.333 12.12 4.64 34.79 2.24
113 114 9.099454 GTTCCGAATTTGTTGTCTTATCTAGAT 57.901 33.333 10.73 10.73 34.79 1.98
114 115 8.092068 TGTTCCGAATTTGTTGTCTTATCTAGA 58.908 33.333 0.00 0.00 0.00 2.43
115 116 8.251750 TGTTCCGAATTTGTTGTCTTATCTAG 57.748 34.615 0.00 0.00 0.00 2.43
116 117 8.610248 TTGTTCCGAATTTGTTGTCTTATCTA 57.390 30.769 0.00 0.00 0.00 1.98
117 118 7.504924 TTGTTCCGAATTTGTTGTCTTATCT 57.495 32.000 0.00 0.00 0.00 1.98
118 119 7.484959 GGATTGTTCCGAATTTGTTGTCTTATC 59.515 37.037 0.00 0.00 30.72 1.75
119 120 7.040062 TGGATTGTTCCGAATTTGTTGTCTTAT 60.040 33.333 0.00 0.00 45.89 1.73
120 121 6.263392 TGGATTGTTCCGAATTTGTTGTCTTA 59.737 34.615 0.00 0.00 45.89 2.10
121 122 5.068460 TGGATTGTTCCGAATTTGTTGTCTT 59.932 36.000 0.00 0.00 45.89 3.01
122 123 4.582656 TGGATTGTTCCGAATTTGTTGTCT 59.417 37.500 0.00 0.00 45.89 3.41
123 124 4.865776 TGGATTGTTCCGAATTTGTTGTC 58.134 39.130 0.00 0.00 45.89 3.18
124 125 4.927978 TGGATTGTTCCGAATTTGTTGT 57.072 36.364 0.00 0.00 45.89 3.32
125 126 4.148000 CGTTGGATTGTTCCGAATTTGTTG 59.852 41.667 0.00 0.00 45.89 3.33
126 127 4.036971 TCGTTGGATTGTTCCGAATTTGTT 59.963 37.500 0.00 0.00 45.89 2.83
127 128 3.566322 TCGTTGGATTGTTCCGAATTTGT 59.434 39.130 0.00 0.00 45.89 2.83
128 129 4.153958 TCGTTGGATTGTTCCGAATTTG 57.846 40.909 0.00 0.00 45.89 2.32
129 130 3.818773 ACTCGTTGGATTGTTCCGAATTT 59.181 39.130 0.00 0.00 45.89 1.82
130 131 3.408634 ACTCGTTGGATTGTTCCGAATT 58.591 40.909 0.00 0.00 45.89 2.17
131 132 3.053831 ACTCGTTGGATTGTTCCGAAT 57.946 42.857 0.00 0.00 45.89 3.34
132 133 2.536761 ACTCGTTGGATTGTTCCGAA 57.463 45.000 0.00 0.00 45.89 4.30
133 134 2.536761 AACTCGTTGGATTGTTCCGA 57.463 45.000 0.00 0.00 45.89 4.55
134 135 2.546368 TGAAACTCGTTGGATTGTTCCG 59.454 45.455 0.00 0.00 45.89 4.30
135 136 4.036380 AGTTGAAACTCGTTGGATTGTTCC 59.964 41.667 0.00 0.00 37.31 3.62
136 137 5.169836 AGTTGAAACTCGTTGGATTGTTC 57.830 39.130 0.00 0.00 32.86 3.18
137 138 5.576447 AAGTTGAAACTCGTTGGATTGTT 57.424 34.783 0.00 0.00 38.57 2.83
138 139 5.576447 AAAGTTGAAACTCGTTGGATTGT 57.424 34.783 0.00 0.00 38.57 2.71
139 140 6.265577 AGAAAAGTTGAAACTCGTTGGATTG 58.734 36.000 0.00 0.00 38.57 2.67
140 141 6.094881 TGAGAAAAGTTGAAACTCGTTGGATT 59.905 34.615 0.00 0.00 38.57 3.01
141 142 5.588648 TGAGAAAAGTTGAAACTCGTTGGAT 59.411 36.000 0.00 0.00 38.57 3.41
142 143 4.938832 TGAGAAAAGTTGAAACTCGTTGGA 59.061 37.500 0.00 0.00 38.57 3.53
143 144 5.229921 TGAGAAAAGTTGAAACTCGTTGG 57.770 39.130 0.00 0.00 38.57 3.77
144 145 6.083630 TGTTGAGAAAAGTTGAAACTCGTTG 58.916 36.000 0.00 0.00 38.57 4.10
145 146 6.249035 TGTTGAGAAAAGTTGAAACTCGTT 57.751 33.333 0.00 0.00 38.57 3.85
146 147 5.873179 TGTTGAGAAAAGTTGAAACTCGT 57.127 34.783 0.00 0.00 38.57 4.18
147 148 6.083630 TGTTGTTGAGAAAAGTTGAAACTCG 58.916 36.000 0.00 0.00 38.57 4.18
148 149 7.381139 TGTTGTTGTTGAGAAAAGTTGAAACTC 59.619 33.333 0.00 0.00 38.57 3.01
149 150 7.206687 TGTTGTTGTTGAGAAAAGTTGAAACT 58.793 30.769 0.00 0.00 42.04 2.66
150 151 7.401484 TGTTGTTGTTGAGAAAAGTTGAAAC 57.599 32.000 0.00 0.00 0.00 2.78
151 152 8.425577 TTTGTTGTTGTTGAGAAAAGTTGAAA 57.574 26.923 0.00 0.00 0.00 2.69
152 153 8.425577 TTTTGTTGTTGTTGAGAAAAGTTGAA 57.574 26.923 0.00 0.00 0.00 2.69
153 154 8.425577 TTTTTGTTGTTGTTGAGAAAAGTTGA 57.574 26.923 0.00 0.00 0.00 3.18
210 211 8.987890 GCAAAATCAAGCATTTCTTAAACCTAA 58.012 29.630 0.00 0.00 33.16 2.69
211 212 8.147058 TGCAAAATCAAGCATTTCTTAAACCTA 58.853 29.630 0.00 0.00 33.16 3.08
212 213 6.991531 TGCAAAATCAAGCATTTCTTAAACCT 59.008 30.769 0.00 0.00 33.16 3.50
213 214 7.071414 GTGCAAAATCAAGCATTTCTTAAACC 58.929 34.615 0.00 0.00 43.44 3.27
214 215 7.629130 TGTGCAAAATCAAGCATTTCTTAAAC 58.371 30.769 0.00 0.00 43.44 2.01
215 216 7.710044 TCTGTGCAAAATCAAGCATTTCTTAAA 59.290 29.630 0.00 0.00 43.44 1.52
216 217 7.208777 TCTGTGCAAAATCAAGCATTTCTTAA 58.791 30.769 0.00 0.00 43.44 1.85
217 218 6.747125 TCTGTGCAAAATCAAGCATTTCTTA 58.253 32.000 0.00 0.00 43.44 2.10
218 219 5.603596 TCTGTGCAAAATCAAGCATTTCTT 58.396 33.333 0.00 0.00 43.44 2.52
219 220 5.204409 TCTGTGCAAAATCAAGCATTTCT 57.796 34.783 0.00 0.00 43.44 2.52
220 221 5.464389 ACTTCTGTGCAAAATCAAGCATTTC 59.536 36.000 0.00 0.00 43.44 2.17
221 222 5.362263 ACTTCTGTGCAAAATCAAGCATTT 58.638 33.333 0.00 0.00 43.44 2.32
222 223 4.952460 ACTTCTGTGCAAAATCAAGCATT 58.048 34.783 0.00 0.00 43.44 3.56
223 224 4.595762 ACTTCTGTGCAAAATCAAGCAT 57.404 36.364 0.00 0.00 43.44 3.79
224 225 5.512753 TTACTTCTGTGCAAAATCAAGCA 57.487 34.783 0.00 0.00 38.65 3.91
225 226 6.307318 CAGATTACTTCTGTGCAAAATCAAGC 59.693 38.462 0.00 0.00 45.79 4.01
226 227 7.792383 CAGATTACTTCTGTGCAAAATCAAG 57.208 36.000 0.00 0.00 45.79 3.02
239 240 8.261522 GGAGTAAATGAGTTCCAGATTACTTCT 58.738 37.037 0.00 0.00 39.45 2.85
240 241 8.041323 TGGAGTAAATGAGTTCCAGATTACTTC 58.959 37.037 0.00 0.00 39.45 3.01
241 242 7.918076 TGGAGTAAATGAGTTCCAGATTACTT 58.082 34.615 0.00 0.00 39.45 2.24
242 243 7.496346 TGGAGTAAATGAGTTCCAGATTACT 57.504 36.000 0.00 0.00 40.77 2.24
243 244 8.451748 GTTTGGAGTAAATGAGTTCCAGATTAC 58.548 37.037 0.00 0.00 40.55 1.89
244 245 8.160765 TGTTTGGAGTAAATGAGTTCCAGATTA 58.839 33.333 0.00 0.00 40.55 1.75
245 246 7.004086 TGTTTGGAGTAAATGAGTTCCAGATT 58.996 34.615 0.00 0.00 40.55 2.40
246 247 6.542821 TGTTTGGAGTAAATGAGTTCCAGAT 58.457 36.000 0.00 0.00 40.55 2.90
247 248 5.935945 TGTTTGGAGTAAATGAGTTCCAGA 58.064 37.500 0.00 0.00 40.55 3.86
248 249 5.997746 TCTGTTTGGAGTAAATGAGTTCCAG 59.002 40.000 0.00 0.00 40.55 3.86
249 250 5.935945 TCTGTTTGGAGTAAATGAGTTCCA 58.064 37.500 0.00 0.00 37.92 3.53
250 251 5.412904 CCTCTGTTTGGAGTAAATGAGTTCC 59.587 44.000 0.00 0.00 33.62 3.62
251 252 6.147985 GTCCTCTGTTTGGAGTAAATGAGTTC 59.852 42.308 0.00 0.00 33.62 3.01
252 253 5.998363 GTCCTCTGTTTGGAGTAAATGAGTT 59.002 40.000 0.00 0.00 33.62 3.01
253 254 5.552178 GTCCTCTGTTTGGAGTAAATGAGT 58.448 41.667 0.00 0.00 33.62 3.41
254 255 4.627467 CGTCCTCTGTTTGGAGTAAATGAG 59.373 45.833 0.00 0.00 33.78 2.90
255 256 4.039973 ACGTCCTCTGTTTGGAGTAAATGA 59.960 41.667 0.00 0.00 33.78 2.57
256 257 4.315803 ACGTCCTCTGTTTGGAGTAAATG 58.684 43.478 0.00 0.00 33.78 2.32
257 258 4.618920 ACGTCCTCTGTTTGGAGTAAAT 57.381 40.909 0.00 0.00 33.78 1.40
258 259 4.411256 AACGTCCTCTGTTTGGAGTAAA 57.589 40.909 0.00 0.00 33.78 2.01
259 260 5.534207 TTAACGTCCTCTGTTTGGAGTAA 57.466 39.130 0.00 0.00 33.78 2.24
260 261 5.534207 TTTAACGTCCTCTGTTTGGAGTA 57.466 39.130 0.00 0.00 33.78 2.59
261 262 4.411256 TTTAACGTCCTCTGTTTGGAGT 57.589 40.909 0.00 0.00 33.78 3.85
262 263 5.941948 ATTTTAACGTCCTCTGTTTGGAG 57.058 39.130 0.00 0.00 33.78 3.86
263 264 5.239963 GGAATTTTAACGTCCTCTGTTTGGA 59.760 40.000 0.00 0.00 0.00 3.53
264 265 5.240844 AGGAATTTTAACGTCCTCTGTTTGG 59.759 40.000 0.00 0.00 37.15 3.28
265 266 6.142817 CAGGAATTTTAACGTCCTCTGTTTG 58.857 40.000 0.00 0.00 39.87 2.93
266 267 5.278315 GCAGGAATTTTAACGTCCTCTGTTT 60.278 40.000 0.00 0.00 39.87 2.83
267 268 4.215613 GCAGGAATTTTAACGTCCTCTGTT 59.784 41.667 0.00 0.00 39.87 3.16
268 269 3.751698 GCAGGAATTTTAACGTCCTCTGT 59.248 43.478 0.00 0.00 39.87 3.41
269 270 3.127030 GGCAGGAATTTTAACGTCCTCTG 59.873 47.826 0.00 0.00 39.87 3.35
270 271 3.344515 GGCAGGAATTTTAACGTCCTCT 58.655 45.455 0.00 0.00 39.87 3.69
271 272 2.422479 GGGCAGGAATTTTAACGTCCTC 59.578 50.000 0.00 0.00 39.87 3.71
272 273 2.224917 TGGGCAGGAATTTTAACGTCCT 60.225 45.455 0.00 0.00 42.72 3.85
365 366 2.203126 GCTTGCCTCTGGGATCGG 60.203 66.667 0.00 0.00 33.58 4.18
391 398 3.195698 GTGCCTCGATGGTTCGGC 61.196 66.667 4.25 4.25 45.53 5.54
396 403 2.046892 GTGCTGTGCCTCGATGGT 60.047 61.111 0.00 0.00 38.35 3.55
397 404 2.046988 TGTGCTGTGCCTCGATGG 60.047 61.111 0.00 0.00 39.35 3.51
398 405 2.747822 GCTGTGCTGTGCCTCGATG 61.748 63.158 0.00 0.00 0.00 3.84
399 406 2.435586 GCTGTGCTGTGCCTCGAT 60.436 61.111 0.00 0.00 0.00 3.59
400 407 3.927548 TGCTGTGCTGTGCCTCGA 61.928 61.111 0.00 0.00 0.00 4.04
401 408 3.720193 GTGCTGTGCTGTGCCTCG 61.720 66.667 0.00 0.00 0.00 4.63
402 409 2.592574 TGTGCTGTGCTGTGCCTC 60.593 61.111 0.00 0.00 0.00 4.70
403 410 2.903855 GTGTGCTGTGCTGTGCCT 60.904 61.111 0.00 0.00 0.00 4.75
404 411 3.969802 GGTGTGCTGTGCTGTGCC 61.970 66.667 0.00 0.00 0.00 5.01
405 412 4.318021 CGGTGTGCTGTGCTGTGC 62.318 66.667 0.00 0.00 0.00 4.57
406 413 4.318021 GCGGTGTGCTGTGCTGTG 62.318 66.667 0.00 0.00 41.73 3.66
407 414 4.854924 TGCGGTGTGCTGTGCTGT 62.855 61.111 0.00 0.00 46.63 4.40
408 415 3.585020 TTGCGGTGTGCTGTGCTG 61.585 61.111 0.00 0.00 46.63 4.41
409 416 3.585990 GTTGCGGTGTGCTGTGCT 61.586 61.111 0.00 0.00 46.63 4.40
410 417 4.629115 GGTTGCGGTGTGCTGTGC 62.629 66.667 0.00 0.00 46.63 4.57
411 418 2.896801 GAGGTTGCGGTGTGCTGTG 61.897 63.158 0.00 0.00 46.63 3.66
487 518 1.661341 CTGTCCCTCAACAGCTATGC 58.339 55.000 0.00 0.00 40.18 3.14
523 554 0.393944 GTTTAAAGAGGGCGGGAGGG 60.394 60.000 0.00 0.00 0.00 4.30
590 622 0.321653 GAATCCTTGCTCGGTGGTGT 60.322 55.000 0.00 0.00 0.00 4.16
591 623 0.321564 TGAATCCTTGCTCGGTGGTG 60.322 55.000 0.00 0.00 0.00 4.17
625 664 1.385153 TAGGGGTAGGAGGGATGGGG 61.385 65.000 0.00 0.00 0.00 4.96
626 665 0.178900 GTAGGGGTAGGAGGGATGGG 60.179 65.000 0.00 0.00 0.00 4.00
629 668 1.709679 CGTAGTAGGGGTAGGAGGGAT 59.290 57.143 0.00 0.00 0.00 3.85
630 669 1.143813 CGTAGTAGGGGTAGGAGGGA 58.856 60.000 0.00 0.00 0.00 4.20
631 670 1.143813 TCGTAGTAGGGGTAGGAGGG 58.856 60.000 0.00 0.00 0.00 4.30
633 672 1.773653 AGGTCGTAGTAGGGGTAGGAG 59.226 57.143 0.00 0.00 0.00 3.69
634 673 1.898863 AGGTCGTAGTAGGGGTAGGA 58.101 55.000 0.00 0.00 0.00 2.94
637 682 1.922447 TGGAAGGTCGTAGTAGGGGTA 59.078 52.381 0.00 0.00 0.00 3.69
639 684 1.962100 GATGGAAGGTCGTAGTAGGGG 59.038 57.143 0.00 0.00 0.00 4.79
644 689 2.526888 TCAGGATGGAAGGTCGTAGT 57.473 50.000 0.00 0.00 36.16 2.73
649 694 2.632512 GAGGAGATCAGGATGGAAGGTC 59.367 54.545 0.00 0.00 36.16 3.85
664 709 2.293246 AGAAGAAGGAGGAGGAGGAGA 58.707 52.381 0.00 0.00 0.00 3.71
665 710 2.846665 AGAAGAAGGAGGAGGAGGAG 57.153 55.000 0.00 0.00 0.00 3.69
666 711 2.657459 AGAAGAAGAAGGAGGAGGAGGA 59.343 50.000 0.00 0.00 0.00 3.71
667 712 3.031013 GAGAAGAAGAAGGAGGAGGAGG 58.969 54.545 0.00 0.00 0.00 4.30
668 713 3.031013 GGAGAAGAAGAAGGAGGAGGAG 58.969 54.545 0.00 0.00 0.00 3.69
669 714 2.292587 GGGAGAAGAAGAAGGAGGAGGA 60.293 54.545 0.00 0.00 0.00 3.71
670 715 2.115427 GGGAGAAGAAGAAGGAGGAGG 58.885 57.143 0.00 0.00 0.00 4.30
671 716 2.115427 GGGGAGAAGAAGAAGGAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
672 717 1.273896 GGGGGAGAAGAAGAAGGAGGA 60.274 57.143 0.00 0.00 0.00 3.71
673 718 1.208706 GGGGGAGAAGAAGAAGGAGG 58.791 60.000 0.00 0.00 0.00 4.30
674 719 0.827368 CGGGGGAGAAGAAGAAGGAG 59.173 60.000 0.00 0.00 0.00 3.69
675 720 1.265454 GCGGGGGAGAAGAAGAAGGA 61.265 60.000 0.00 0.00 0.00 3.36
676 721 1.222113 GCGGGGGAGAAGAAGAAGG 59.778 63.158 0.00 0.00 0.00 3.46
677 722 1.222113 GGCGGGGGAGAAGAAGAAG 59.778 63.158 0.00 0.00 0.00 2.85
678 723 2.298661 GGGCGGGGGAGAAGAAGAA 61.299 63.158 0.00 0.00 0.00 2.52
711 756 3.728373 GGGGGCGGAGGAATGTGT 61.728 66.667 0.00 0.00 0.00 3.72
773 818 1.304617 GAGCAAGAAGGGGGAAGGG 59.695 63.158 0.00 0.00 0.00 3.95
808 853 4.357279 GCCCTGTCTGCTTGCCCT 62.357 66.667 0.00 0.00 0.00 5.19
861 910 1.228124 CAACGAGGCCCAAAGACCA 60.228 57.895 0.00 0.00 0.00 4.02
883 932 1.066286 ACAGATCAGGAGAGCACAAGC 60.066 52.381 0.00 0.00 42.56 4.01
884 933 2.619147 CACAGATCAGGAGAGCACAAG 58.381 52.381 0.00 0.00 30.99 3.16
886 935 0.900421 CCACAGATCAGGAGAGCACA 59.100 55.000 0.00 0.00 30.99 4.57
887 936 1.189752 TCCACAGATCAGGAGAGCAC 58.810 55.000 0.00 0.00 30.99 4.40
893 942 0.031716 CTCCCCTCCACAGATCAGGA 60.032 60.000 0.00 0.00 0.00 3.86
894 943 1.053264 CCTCCCCTCCACAGATCAGG 61.053 65.000 0.00 0.00 0.00 3.86
895 944 1.053264 CCCTCCCCTCCACAGATCAG 61.053 65.000 0.00 0.00 0.00 2.90
896 945 1.003442 CCCTCCCCTCCACAGATCA 59.997 63.158 0.00 0.00 0.00 2.92
897 946 1.768077 CCCCTCCCCTCCACAGATC 60.768 68.421 0.00 0.00 0.00 2.75
898 947 2.263099 CTCCCCTCCCCTCCACAGAT 62.263 65.000 0.00 0.00 0.00 2.90
899 948 2.874245 TCCCCTCCCCTCCACAGA 60.874 66.667 0.00 0.00 0.00 3.41
900 949 2.366167 CTCCCCTCCCCTCCACAG 60.366 72.222 0.00 0.00 0.00 3.66
901 950 4.024984 CCTCCCCTCCCCTCCACA 62.025 72.222 0.00 0.00 0.00 4.17
902 951 4.026357 ACCTCCCCTCCCCTCCAC 62.026 72.222 0.00 0.00 0.00 4.02
903 952 4.024984 CACCTCCCCTCCCCTCCA 62.025 72.222 0.00 0.00 0.00 3.86
914 963 2.187946 CCGCCACAGATCACCTCC 59.812 66.667 0.00 0.00 0.00 4.30
933 982 5.757808 TCACAACTTTCAGATCAAATCACGA 59.242 36.000 0.00 0.00 0.00 4.35
1122 1384 0.336737 TCCAGGAAGAGGAGGAGGAC 59.663 60.000 0.00 0.00 0.00 3.85
1302 1564 3.878519 CCGCTCTCCTCGTCGTCC 61.879 72.222 0.00 0.00 0.00 4.79
1431 1693 2.200370 ACCACCCAGACGACAGGA 59.800 61.111 0.00 0.00 0.00 3.86
1434 1696 2.445085 ACCACCACCCAGACGACA 60.445 61.111 0.00 0.00 0.00 4.35
1533 1795 0.037232 CGGTGGTGAAGTTCTCCTCC 60.037 60.000 25.30 25.30 39.20 4.30
1757 2019 6.694411 CACATTGTAATTTGCAATCTAGGAGC 59.306 38.462 9.43 0.00 34.68 4.70
1798 2065 1.473677 TGCATCAAAATCGGCAAGGAG 59.526 47.619 0.00 0.00 32.54 3.69
1800 2067 1.067706 TGTGCATCAAAATCGGCAAGG 60.068 47.619 0.00 0.00 38.10 3.61
1806 2073 3.061563 CCAGCATTTGTGCATCAAAATCG 59.938 43.478 15.21 9.87 46.97 3.34
1812 2079 2.241160 AGTTCCAGCATTTGTGCATCA 58.759 42.857 3.03 0.00 37.25 3.07
1837 2104 2.143925 CTGGAAGGACGGTGAAAAGAC 58.856 52.381 0.00 0.00 0.00 3.01
1990 2257 8.699749 CAAAACCTTTAAAATTAGCTGTACTGC 58.300 33.333 16.28 16.28 0.00 4.40
1991 2258 9.191995 CCAAAACCTTTAAAATTAGCTGTACTG 57.808 33.333 0.00 0.00 0.00 2.74
1997 2264 5.700832 GCTGCCAAAACCTTTAAAATTAGCT 59.299 36.000 0.00 0.00 0.00 3.32
1998 2265 5.106712 GGCTGCCAAAACCTTTAAAATTAGC 60.107 40.000 15.17 0.00 0.00 3.09
2039 2317 7.147724 TGTGCTGCCTTCAATTATACTACTACT 60.148 37.037 0.00 0.00 0.00 2.57
2040 2318 6.984474 TGTGCTGCCTTCAATTATACTACTAC 59.016 38.462 0.00 0.00 0.00 2.73
2041 2319 7.119709 TGTGCTGCCTTCAATTATACTACTA 57.880 36.000 0.00 0.00 0.00 1.82
2042 2320 5.989477 TGTGCTGCCTTCAATTATACTACT 58.011 37.500 0.00 0.00 0.00 2.57
2043 2321 6.677781 TTGTGCTGCCTTCAATTATACTAC 57.322 37.500 0.00 0.00 0.00 2.73
2044 2322 5.296780 GCTTGTGCTGCCTTCAATTATACTA 59.703 40.000 0.00 0.00 36.03 1.82
2164 2442 1.856629 ATTGACCCCTTTGCATCAGG 58.143 50.000 5.59 5.59 0.00 3.86
2297 2577 1.155424 ACGCAATTCGGTCGTTGTGT 61.155 50.000 6.96 6.96 42.38 3.72
2409 2694 4.464244 AGCACTAATCAGCAGTACTTCTGA 59.536 41.667 24.40 24.40 46.27 3.27
2413 2698 6.934645 TGTTAAAGCACTAATCAGCAGTACTT 59.065 34.615 0.00 0.00 32.19 2.24
2430 2715 5.975282 AGTAGTTAGCCCTACTGTTAAAGC 58.025 41.667 7.34 0.00 44.57 3.51
2490 2777 7.979115 TCAATGTGTGTTTTGTTAAGTTAGC 57.021 32.000 0.00 0.00 0.00 3.09
2496 2783 6.758886 GGTCCATTCAATGTGTGTTTTGTTAA 59.241 34.615 0.00 0.00 0.00 2.01
2540 2827 2.229675 TAGGAGCATCAACATCGCAG 57.770 50.000 0.00 0.00 36.25 5.18
2543 2830 5.268544 CAAATGTTAGGAGCATCAACATCG 58.731 41.667 6.49 0.00 40.94 3.84
2573 2860 6.264067 CCCCCAAACATTTTTAGCAAATTTCA 59.736 34.615 0.00 0.00 0.00 2.69
2593 2880 3.534747 ACTACTATCTTCTACCACCCCCA 59.465 47.826 0.00 0.00 0.00 4.96
2594 2881 4.196118 ACTACTATCTTCTACCACCCCC 57.804 50.000 0.00 0.00 0.00 5.40
2596 2883 5.240403 CGGTTACTACTATCTTCTACCACCC 59.760 48.000 0.00 0.00 0.00 4.61
2667 2954 1.515521 GGGGGTCAGTGAAAGCAACG 61.516 60.000 0.00 0.00 0.00 4.10
2726 3016 2.869192 TGGAAAATTTGCTCCAAAACGC 59.131 40.909 8.83 0.00 38.81 4.84
2751 3041 4.624364 CAGCTGGCGGTCACACCA 62.624 66.667 5.57 0.00 38.47 4.17
2815 3105 3.303881 AAAGAAAATCGCCCTTGCTTC 57.696 42.857 0.00 0.00 34.43 3.86
2948 3238 1.583404 GCAAAGCAAACGTTGACACAG 59.417 47.619 0.00 0.00 37.44 3.66
2981 3271 2.943033 CGGTATGTTTGACCTGGGATTC 59.057 50.000 0.00 0.00 34.56 2.52
2985 3275 1.278127 AGACGGTATGTTTGACCTGGG 59.722 52.381 0.00 0.00 34.56 4.45
3279 3580 6.596309 AACCAAAAGGATTCTTCTTCATCC 57.404 37.500 0.00 0.00 39.59 3.51
3630 3933 3.924922 AGTCACCCGGGATTAGAAGTAT 58.075 45.455 32.02 0.00 0.00 2.12
3643 3946 8.013378 CACAAGTTTTACTATTTTAGTCACCCG 58.987 37.037 0.00 0.00 40.14 5.28
3644 3947 8.843262 ACACAAGTTTTACTATTTTAGTCACCC 58.157 33.333 0.00 0.00 40.14 4.61
3687 3992 7.828508 TTCAGGTTAAGTACACTTGTCTAGA 57.171 36.000 4.86 0.00 37.40 2.43
3690 3995 7.506114 TCAATTCAGGTTAAGTACACTTGTCT 58.494 34.615 4.86 0.00 37.40 3.41
3723 4028 5.767665 TGTATGGTCAAACACTACTGCAAAT 59.232 36.000 0.00 0.00 0.00 2.32
3761 4071 7.148407 GCAAGACTTTACTTACTATGCACACAT 60.148 37.037 0.00 0.00 40.49 3.21
3763 4073 6.534934 GCAAGACTTTACTTACTATGCACAC 58.465 40.000 0.00 0.00 0.00 3.82
3801 4111 4.162040 AGGGGATGAGACAATCACAATC 57.838 45.455 0.00 0.00 41.91 2.67
3802 4112 4.723789 ACTAGGGGATGAGACAATCACAAT 59.276 41.667 0.00 0.00 41.91 2.71
3803 4113 4.104086 ACTAGGGGATGAGACAATCACAA 58.896 43.478 0.00 0.00 41.91 3.33
3804 4114 3.724478 ACTAGGGGATGAGACAATCACA 58.276 45.455 0.00 0.00 41.91 3.58
3805 4115 4.762289 AACTAGGGGATGAGACAATCAC 57.238 45.455 0.00 0.00 41.91 3.06
3806 4116 4.536090 ACAAACTAGGGGATGAGACAATCA 59.464 41.667 0.00 0.00 43.70 2.57
3872 4182 2.512885 GACGAGTGACGAATAGCGAAA 58.487 47.619 0.00 0.00 45.77 3.46
3894 4204 2.114670 CCCACTTGCCTACGCATGG 61.115 63.158 0.00 2.87 46.67 3.66
3932 4242 5.295292 GCATGCAACTGTCTCACAATACTAT 59.705 40.000 14.21 0.00 0.00 2.12
4004 4314 4.974645 ACTTCCACTCAGTTATTCCACA 57.025 40.909 0.00 0.00 0.00 4.17
4012 4322 9.930693 CTAGTATTCTAAAACTTCCACTCAGTT 57.069 33.333 0.00 0.00 35.94 3.16
4013 4323 8.035984 GCTAGTATTCTAAAACTTCCACTCAGT 58.964 37.037 0.00 0.00 0.00 3.41
4014 4324 8.254508 AGCTAGTATTCTAAAACTTCCACTCAG 58.745 37.037 0.00 0.00 0.00 3.35
4015 4325 8.035394 CAGCTAGTATTCTAAAACTTCCACTCA 58.965 37.037 0.00 0.00 0.00 3.41
4016 4326 8.035984 ACAGCTAGTATTCTAAAACTTCCACTC 58.964 37.037 0.00 0.00 0.00 3.51
4017 4327 7.908453 ACAGCTAGTATTCTAAAACTTCCACT 58.092 34.615 0.00 0.00 0.00 4.00
4019 4329 9.032624 ACTACAGCTAGTATTCTAAAACTTCCA 57.967 33.333 0.00 0.00 30.81 3.53
4054 4365 2.161855 CCACATGCTACCTTGCTGAAA 58.838 47.619 0.00 0.00 0.00 2.69
4059 4370 1.098050 CCTTCCACATGCTACCTTGC 58.902 55.000 0.00 0.00 0.00 4.01
4065 4376 0.692476 AGCACACCTTCCACATGCTA 59.308 50.000 0.00 0.00 44.59 3.49
4094 4405 5.716228 TCAACAAGAAAAGATATGTGGCCAT 59.284 36.000 9.72 0.00 34.97 4.40
4139 4451 7.090808 GGGCCAGTTGAGTTTAAAAATTAGAG 58.909 38.462 4.39 0.00 0.00 2.43
4147 4459 2.298729 GCATGGGCCAGTTGAGTTTAAA 59.701 45.455 13.78 0.00 0.00 1.52
4150 4462 0.469705 TGCATGGGCCAGTTGAGTTT 60.470 50.000 13.78 0.00 40.13 2.66
4160 4472 3.302344 ACCAAACGTGCATGGGCC 61.302 61.111 11.36 0.00 41.17 5.80
4181 4493 0.548510 GCCCAGAATTAGGCTCCACT 59.451 55.000 0.00 0.00 46.14 4.00
4284 4597 6.978080 AGTCGTTTGCAAACTTGTAATTCAAT 59.022 30.769 33.03 8.03 36.77 2.57
4333 4646 7.989826 AGCATTATAAGGAACATCAGAAACAC 58.010 34.615 0.32 0.00 0.00 3.32
4407 4720 0.895530 CCACTACCTTCTTCTCGCCA 59.104 55.000 0.00 0.00 0.00 5.69
4419 4732 3.468140 GGGCCCTCGACCACTACC 61.468 72.222 17.04 0.00 0.00 3.18
4446 4759 2.707849 GCCGACTACCTTCGAGGCA 61.708 63.158 3.40 0.00 43.65 4.75
4566 4879 4.380531 ACGCAAATCCTGATACATCGATT 58.619 39.130 0.00 0.00 0.00 3.34
4581 4894 6.978080 ACAAAATAGAACTGTTGAACGCAAAT 59.022 30.769 0.00 0.00 35.42 2.32
4653 4966 0.328258 CTGGGGGTGAACTAACCTGG 59.672 60.000 0.00 0.00 40.35 4.45
4800 5113 2.957680 TGTGTGTGGCTTGATCAACAAT 59.042 40.909 3.38 0.00 37.88 2.71
4811 5124 9.120538 CCTATTACTTAAATATTGTGTGTGGCT 57.879 33.333 0.00 0.00 29.63 4.75
4823 5136 7.988599 ACAATGCGTGGTCCTATTACTTAAATA 59.011 33.333 0.00 0.00 0.00 1.40
4849 5162 8.245195 TGTCATGGTATAGATAAGTAGTTGCA 57.755 34.615 0.00 0.00 0.00 4.08
4988 5301 2.074547 TCGCTAGTTTCGGAGGTTTG 57.925 50.000 0.00 0.00 0.00 2.93
5008 5321 2.957312 GCTTCTGAGGATCCTAGTGGGT 60.957 54.545 16.16 0.00 36.25 4.51
5094 5408 8.989653 TGTGAAATTTCGAGTTTTAAAAAGGT 57.010 26.923 13.34 0.00 0.00 3.50
5102 5416 6.530181 GGTTGACTTGTGAAATTTCGAGTTTT 59.470 34.615 17.40 0.00 0.00 2.43
5109 5423 8.567948 TCTTATCAGGTTGACTTGTGAAATTTC 58.432 33.333 11.41 11.41 0.00 2.17
5126 5440 6.045318 CACCAACTGACACTATCTTATCAGG 58.955 44.000 5.20 0.00 42.39 3.86
5134 5448 3.600388 CCTTCCACCAACTGACACTATC 58.400 50.000 0.00 0.00 0.00 2.08
5136 5450 1.071699 GCCTTCCACCAACTGACACTA 59.928 52.381 0.00 0.00 0.00 2.74
5138 5452 1.172812 GGCCTTCCACCAACTGACAC 61.173 60.000 0.00 0.00 0.00 3.67
5208 5531 5.116084 AGTACCGTGGTAGTACAAGGATA 57.884 43.478 4.56 0.00 41.73 2.59
5218 5541 3.999046 ACCTTGAAAAGTACCGTGGTAG 58.001 45.455 0.00 0.00 44.25 3.18
5220 5543 3.389002 AGTACCTTGAAAAGTACCGTGGT 59.611 43.478 0.00 0.00 44.25 4.16
5221 5544 3.999046 AGTACCTTGAAAAGTACCGTGG 58.001 45.455 0.00 0.00 44.25 4.94
5222 5545 8.761575 TTATTAGTACCTTGAAAAGTACCGTG 57.238 34.615 0.00 0.00 44.25 4.94
5223 5546 9.948964 ATTTATTAGTACCTTGAAAAGTACCGT 57.051 29.630 0.00 0.00 44.25 4.83
5248 5576 8.562949 TTACTTACCCCTTCAGCTAAAGATAT 57.437 34.615 0.00 0.00 0.00 1.63
5263 5591 1.340308 ACCCGCAACATTACTTACCCC 60.340 52.381 0.00 0.00 0.00 4.95
5266 5594 3.925913 TCGTAACCCGCAACATTACTTAC 59.074 43.478 0.00 0.00 36.19 2.34
5279 5607 1.134788 AGGAGCAGAAATCGTAACCCG 60.135 52.381 0.00 0.00 38.13 5.28
5311 5639 8.691194 AATTCAGATGGGATAATATCTCAGGA 57.309 34.615 8.92 3.85 44.25 3.86
5327 5655 1.019673 CCGGGCAGTGAATTCAGATG 58.980 55.000 8.80 11.91 0.00 2.90
5350 5678 6.234920 TCGAAAGGGAAGTTGATAATTGTGA 58.765 36.000 0.00 0.00 0.00 3.58
5420 5748 0.613777 ACCTGTTCCCCTCGATGTTC 59.386 55.000 0.00 0.00 0.00 3.18
5499 5827 2.030451 AGTAGGTGAGACGAACGAAACC 60.030 50.000 0.14 3.28 0.00 3.27
5504 5832 2.783333 GCTAAGTAGGTGAGACGAACG 58.217 52.381 0.00 0.00 0.00 3.95
5505 5833 2.783333 CGCTAAGTAGGTGAGACGAAC 58.217 52.381 0.00 0.00 0.00 3.95
5506 5834 1.131883 GCGCTAAGTAGGTGAGACGAA 59.868 52.381 0.00 0.00 0.00 3.85
5510 5847 2.375146 TGATGCGCTAAGTAGGTGAGA 58.625 47.619 9.73 0.00 0.00 3.27
5527 5864 3.198200 GGATGCAGCTCTAGGATGATGAT 59.802 47.826 0.22 0.00 32.28 2.45
5591 5929 2.306341 ATCAGTGATCAGTGCTTCGG 57.694 50.000 23.36 1.56 0.00 4.30
5605 5943 6.878923 TGATCCGTTATCTTGTTTCAATCAGT 59.121 34.615 0.00 0.00 35.45 3.41
5647 5985 2.102252 GACACAGATGGAGTGAGGGATC 59.898 54.545 0.00 0.00 40.16 3.36
5734 6072 9.014533 GTTCTAAGCAAATTATTAGCTTCTTGC 57.985 33.333 1.80 0.00 44.67 4.01
5752 6090 3.926616 TGGTAGCAGTTCAGTTCTAAGC 58.073 45.455 0.00 0.00 0.00 3.09
5775 6113 3.245016 TGAAAGATGAGCACTGGACCATT 60.245 43.478 0.00 0.00 0.00 3.16
5797 6135 7.721399 AGAATCAGTCCTGTTGAGTAACAAAAT 59.279 33.333 0.00 0.00 45.53 1.82
5801 6139 5.279506 GGAGAATCAGTCCTGTTGAGTAACA 60.280 44.000 0.00 0.00 40.01 2.41
5837 6175 2.814336 CCAAGGGAAAAGAGTAGTGTGC 59.186 50.000 0.00 0.00 0.00 4.57
5867 6205 3.340814 AACTTGATCGAGTCCTGCAAT 57.659 42.857 16.17 0.00 0.00 3.56
5894 6232 2.607750 TCCTCCAGCACCACCTCC 60.608 66.667 0.00 0.00 0.00 4.30
5913 6251 0.035056 ATCCCCTTCAGCTTTGTCCG 60.035 55.000 0.00 0.00 0.00 4.79
6022 6360 4.105697 ACCTTCTTCTATGGTGGGTTTTCA 59.894 41.667 0.00 0.00 34.41 2.69
6085 6423 1.222115 AACACTGTTCTTCTCCGCGC 61.222 55.000 0.00 0.00 0.00 6.86
6141 6483 5.631119 CAACCTTCCTCCTTTCTCCTTTTA 58.369 41.667 0.00 0.00 0.00 1.52
6290 6642 6.152154 CGGGGTTAAAGAATCACAGGTAAAAT 59.848 38.462 0.00 0.00 0.00 1.82
6291 6643 5.474189 CGGGGTTAAAGAATCACAGGTAAAA 59.526 40.000 0.00 0.00 0.00 1.52
6292 6644 5.005094 CGGGGTTAAAGAATCACAGGTAAA 58.995 41.667 0.00 0.00 0.00 2.01
6357 6713 4.680237 TTGCGCTCCACAGACGGG 62.680 66.667 9.73 0.00 0.00 5.28
6382 6738 9.944376 TCTCAAACTTTCTACACAGCTTATTAT 57.056 29.630 0.00 0.00 0.00 1.28
6465 6824 5.227152 ACAAAAAGCGAAACAGTTCAGTTT 58.773 33.333 0.00 0.00 43.90 2.66
6468 6827 5.761818 AAACAAAAAGCGAAACAGTTCAG 57.238 34.783 0.00 0.00 32.89 3.02
6482 6841 6.785191 TGAACAACAGCAACAAAAACAAAAA 58.215 28.000 0.00 0.00 0.00 1.94
6484 6843 5.755375 TCTGAACAACAGCAACAAAAACAAA 59.245 32.000 0.00 0.00 45.38 2.83
6487 6846 5.837586 TTCTGAACAACAGCAACAAAAAC 57.162 34.783 0.00 0.00 45.38 2.43
6493 6852 3.488310 CAGCAATTCTGAACAACAGCAAC 59.512 43.478 0.00 0.00 45.72 4.17
6595 6960 4.887987 AGATCTCGCTGCCGCTGC 62.888 66.667 11.96 11.96 38.26 5.25
6596 6961 2.960659 CAGATCTCGCTGCCGCTG 60.961 66.667 0.00 0.00 0.00 5.18
6602 6967 3.837908 ATCGCCGCAGATCTCGCTG 62.838 63.158 13.06 8.98 38.91 5.18
6603 6968 3.600694 ATCGCCGCAGATCTCGCT 61.601 61.111 13.06 0.00 0.00 4.93
6604 6969 3.401411 CATCGCCGCAGATCTCGC 61.401 66.667 0.00 0.00 0.00 5.03
6605 6970 1.299392 TTCATCGCCGCAGATCTCG 60.299 57.895 0.00 0.00 0.00 4.04
6606 6971 0.249238 AGTTCATCGCCGCAGATCTC 60.249 55.000 0.00 0.00 0.00 2.75
6758 7123 5.709164 CAGAGTCAATCAGGAATTGGACTTT 59.291 40.000 0.00 0.00 44.19 2.66
6765 7130 4.248859 CACGTCAGAGTCAATCAGGAATT 58.751 43.478 0.00 0.00 0.00 2.17
6774 7139 1.032794 AGTCAGCACGTCAGAGTCAA 58.967 50.000 0.00 0.00 0.00 3.18
6779 7144 1.300156 GCACAGTCAGCACGTCAGA 60.300 57.895 0.00 0.00 0.00 3.27
6781 7146 1.592400 CAGCACAGTCAGCACGTCA 60.592 57.895 0.00 0.00 0.00 4.35
6807 7187 1.712018 CCACATCGATGCACCAGCTG 61.712 60.000 25.11 13.35 42.74 4.24
6808 7188 1.450848 CCACATCGATGCACCAGCT 60.451 57.895 25.11 0.56 42.74 4.24
6821 7201 0.105453 ATCGGAGAGCCTACCCACAT 60.105 55.000 0.00 0.00 43.63 3.21
6829 7209 1.617850 GTGATCATCATCGGAGAGCCT 59.382 52.381 0.00 0.00 43.63 4.58
6834 7214 2.398498 GTTCCGTGATCATCATCGGAG 58.602 52.381 22.37 5.85 44.39 4.63
6837 7217 1.131771 CCGTTCCGTGATCATCATCG 58.868 55.000 0.00 0.00 0.00 3.84
6883 7263 1.499007 ACCATGTGAACCAAAGAGGGT 59.501 47.619 0.00 0.00 43.33 4.34
6884 7264 2.292828 ACCATGTGAACCAAAGAGGG 57.707 50.000 0.00 0.00 43.89 4.30
6885 7265 4.501400 GGAAAACCATGTGAACCAAAGAGG 60.501 45.833 0.00 0.00 45.67 3.69
6886 7266 4.342092 AGGAAAACCATGTGAACCAAAGAG 59.658 41.667 0.00 0.00 0.00 2.85
6887 7267 4.099266 CAGGAAAACCATGTGAACCAAAGA 59.901 41.667 0.00 0.00 0.00 2.52
6888 7268 4.370917 CAGGAAAACCATGTGAACCAAAG 58.629 43.478 0.00 0.00 0.00 2.77
6889 7269 3.133721 CCAGGAAAACCATGTGAACCAAA 59.866 43.478 0.00 0.00 0.00 3.28
6890 7270 2.697751 CCAGGAAAACCATGTGAACCAA 59.302 45.455 0.00 0.00 0.00 3.67
6891 7271 2.315176 CCAGGAAAACCATGTGAACCA 58.685 47.619 0.00 0.00 0.00 3.67
6892 7272 2.316108 ACCAGGAAAACCATGTGAACC 58.684 47.619 0.00 0.00 0.00 3.62
6893 7273 4.142038 ACTACCAGGAAAACCATGTGAAC 58.858 43.478 0.00 0.00 0.00 3.18
6894 7274 4.447138 ACTACCAGGAAAACCATGTGAA 57.553 40.909 0.00 0.00 0.00 3.18
6895 7275 4.564821 GCTACTACCAGGAAAACCATGTGA 60.565 45.833 0.00 0.00 0.00 3.58
6896 7276 3.689649 GCTACTACCAGGAAAACCATGTG 59.310 47.826 0.00 0.00 0.00 3.21
6897 7277 3.329520 TGCTACTACCAGGAAAACCATGT 59.670 43.478 0.00 0.00 0.00 3.21
6898 7278 3.950397 TGCTACTACCAGGAAAACCATG 58.050 45.455 0.00 0.00 0.00 3.66
6899 7279 4.650972 TTGCTACTACCAGGAAAACCAT 57.349 40.909 0.00 0.00 0.00 3.55
6900 7280 4.650972 ATTGCTACTACCAGGAAAACCA 57.349 40.909 0.00 0.00 29.11 3.67
6901 7281 6.039382 CCATAATTGCTACTACCAGGAAAACC 59.961 42.308 0.00 0.00 29.11 3.27
6902 7282 6.826741 TCCATAATTGCTACTACCAGGAAAAC 59.173 38.462 0.00 0.00 29.11 2.43
6903 7283 6.964464 TCCATAATTGCTACTACCAGGAAAA 58.036 36.000 0.00 0.00 29.11 2.29
6904 7284 6.409234 CCTCCATAATTGCTACTACCAGGAAA 60.409 42.308 0.00 0.00 29.11 3.13
6905 7285 5.071788 CCTCCATAATTGCTACTACCAGGAA 59.928 44.000 0.00 0.00 0.00 3.36
6906 7286 4.593206 CCTCCATAATTGCTACTACCAGGA 59.407 45.833 0.00 0.00 0.00 3.86
6907 7287 4.593206 TCCTCCATAATTGCTACTACCAGG 59.407 45.833 0.00 0.00 0.00 4.45
6908 7288 5.808366 TCCTCCATAATTGCTACTACCAG 57.192 43.478 0.00 0.00 0.00 4.00
6909 7289 5.843969 TGATCCTCCATAATTGCTACTACCA 59.156 40.000 0.00 0.00 0.00 3.25
6910 7290 6.360370 TGATCCTCCATAATTGCTACTACC 57.640 41.667 0.00 0.00 0.00 3.18
6911 7291 7.173390 GGTTTGATCCTCCATAATTGCTACTAC 59.827 40.741 0.00 0.00 0.00 2.73
6912 7292 7.072454 AGGTTTGATCCTCCATAATTGCTACTA 59.928 37.037 0.00 0.00 31.32 1.82
6913 7293 6.064717 GGTTTGATCCTCCATAATTGCTACT 58.935 40.000 0.00 0.00 0.00 2.57
6914 7294 6.064717 AGGTTTGATCCTCCATAATTGCTAC 58.935 40.000 0.00 0.00 31.32 3.58
6915 7295 6.266131 AGGTTTGATCCTCCATAATTGCTA 57.734 37.500 0.00 0.00 31.32 3.49
6916 7296 5.134725 AGGTTTGATCCTCCATAATTGCT 57.865 39.130 0.00 0.00 31.32 3.91
6917 7297 5.221322 GGAAGGTTTGATCCTCCATAATTGC 60.221 44.000 0.00 0.00 36.74 3.56
6918 7298 5.009010 CGGAAGGTTTGATCCTCCATAATTG 59.991 44.000 0.00 0.00 36.74 2.32
6919 7299 5.104109 TCGGAAGGTTTGATCCTCCATAATT 60.104 40.000 0.00 0.00 36.74 1.40
6920 7300 4.412199 TCGGAAGGTTTGATCCTCCATAAT 59.588 41.667 0.00 0.00 36.74 1.28
6921 7301 3.778075 TCGGAAGGTTTGATCCTCCATAA 59.222 43.478 0.00 0.00 36.74 1.90
6922 7302 3.380393 TCGGAAGGTTTGATCCTCCATA 58.620 45.455 0.00 0.00 36.74 2.74
6923 7303 2.196595 TCGGAAGGTTTGATCCTCCAT 58.803 47.619 0.00 0.00 36.74 3.41
6924 7304 1.651737 TCGGAAGGTTTGATCCTCCA 58.348 50.000 0.00 0.00 36.74 3.86
6925 7305 2.781681 TTCGGAAGGTTTGATCCTCC 57.218 50.000 0.00 0.00 36.74 4.30
6926 7306 5.644977 AAAATTCGGAAGGTTTGATCCTC 57.355 39.130 0.00 0.00 36.74 3.71
6948 7328 7.231722 TCGAAGGTTTTTGATCCTCCATAAAAA 59.768 33.333 0.00 0.00 33.09 1.94
6949 7329 6.717540 TCGAAGGTTTTTGATCCTCCATAAAA 59.282 34.615 0.00 0.00 33.09 1.52
6950 7330 6.242396 TCGAAGGTTTTTGATCCTCCATAAA 58.758 36.000 0.00 0.00 33.09 1.40
6951 7331 5.811190 TCGAAGGTTTTTGATCCTCCATAA 58.189 37.500 0.00 0.00 33.09 1.90
6952 7332 5.429681 TCGAAGGTTTTTGATCCTCCATA 57.570 39.130 0.00 0.00 33.09 2.74
6953 7333 4.301072 TCGAAGGTTTTTGATCCTCCAT 57.699 40.909 0.00 0.00 33.09 3.41
6954 7334 3.780804 TCGAAGGTTTTTGATCCTCCA 57.219 42.857 0.00 0.00 33.09 3.86
6955 7335 5.644977 ATTTCGAAGGTTTTTGATCCTCC 57.355 39.130 0.00 0.00 33.09 4.30
6956 7336 7.116376 GGAAAATTTCGAAGGTTTTTGATCCTC 59.884 37.037 18.39 8.75 33.09 3.71
6957 7337 6.929049 GGAAAATTTCGAAGGTTTTTGATCCT 59.071 34.615 18.39 2.16 35.34 3.24
6958 7338 6.147164 GGGAAAATTTCGAAGGTTTTTGATCC 59.853 38.462 18.39 15.56 0.00 3.36
6959 7339 6.704050 TGGGAAAATTTCGAAGGTTTTTGATC 59.296 34.615 18.39 9.98 0.00 2.92
6960 7340 6.587273 TGGGAAAATTTCGAAGGTTTTTGAT 58.413 32.000 18.39 3.50 0.00 2.57
6961 7341 5.978814 TGGGAAAATTTCGAAGGTTTTTGA 58.021 33.333 18.39 8.11 0.00 2.69
6962 7342 5.815222 ACTGGGAAAATTTCGAAGGTTTTTG 59.185 36.000 18.39 13.36 0.00 2.44
6963 7343 5.984725 ACTGGGAAAATTTCGAAGGTTTTT 58.015 33.333 18.39 15.52 0.00 1.94
6964 7344 5.607939 ACTGGGAAAATTTCGAAGGTTTT 57.392 34.783 17.76 17.76 0.00 2.43
6965 7345 5.607939 AACTGGGAAAATTTCGAAGGTTT 57.392 34.783 0.00 2.86 0.00 3.27
6966 7346 5.831525 AGTAACTGGGAAAATTTCGAAGGTT 59.168 36.000 0.00 9.33 0.00 3.50
6967 7347 5.382616 AGTAACTGGGAAAATTTCGAAGGT 58.617 37.500 0.00 6.64 0.00 3.50
6968 7348 5.959618 AGTAACTGGGAAAATTTCGAAGG 57.040 39.130 0.00 0.28 0.00 3.46
6969 7349 6.877322 TCCTAGTAACTGGGAAAATTTCGAAG 59.123 38.462 0.00 2.66 38.18 3.79
6970 7350 6.652062 GTCCTAGTAACTGGGAAAATTTCGAA 59.348 38.462 0.00 0.00 42.60 3.71
6971 7351 6.013984 AGTCCTAGTAACTGGGAAAATTTCGA 60.014 38.462 0.00 0.00 42.60 3.71
6972 7352 6.092259 CAGTCCTAGTAACTGGGAAAATTTCG 59.908 42.308 12.53 0.00 42.60 3.46
6973 7353 7.379098 CAGTCCTAGTAACTGGGAAAATTTC 57.621 40.000 12.53 0.00 42.60 2.17
6992 7372 7.289310 GGGTACTATATAGTAGGATCCAGTCC 58.711 46.154 20.62 14.61 41.30 3.85
6993 7373 7.289310 GGGGTACTATATAGTAGGATCCAGTC 58.711 46.154 20.62 7.59 39.29 3.51
6994 7374 6.161883 GGGGGTACTATATAGTAGGATCCAGT 59.838 46.154 20.62 8.40 39.29 4.00
6995 7375 6.393440 AGGGGGTACTATATAGTAGGATCCAG 59.607 46.154 20.62 1.93 39.29 3.86
6996 7376 6.293784 AGGGGGTACTATATAGTAGGATCCA 58.706 44.000 20.62 0.00 39.29 3.41
6997 7377 6.183361 GGAGGGGGTACTATATAGTAGGATCC 60.183 50.000 20.62 17.27 39.29 3.36
6998 7378 6.465607 CGGAGGGGGTACTATATAGTAGGATC 60.466 50.000 20.62 14.15 39.29 3.36
6999 7379 5.372066 CGGAGGGGGTACTATATAGTAGGAT 59.628 48.000 20.62 7.55 39.29 3.24
7000 7380 4.723789 CGGAGGGGGTACTATATAGTAGGA 59.276 50.000 20.62 1.52 39.29 2.94
7001 7381 4.476479 ACGGAGGGGGTACTATATAGTAGG 59.524 50.000 20.62 7.41 39.29 3.18
7002 7382 5.397334 GGACGGAGGGGGTACTATATAGTAG 60.397 52.000 20.62 10.37 39.29 2.57
7003 7383 4.475016 GGACGGAGGGGGTACTATATAGTA 59.525 50.000 17.03 17.03 37.73 1.82
7004 7384 3.268072 GGACGGAGGGGGTACTATATAGT 59.732 52.174 19.07 19.07 40.24 2.12
7005 7385 3.372458 GGGACGGAGGGGGTACTATATAG 60.372 56.522 8.27 8.27 0.00 1.31
7006 7386 2.582636 GGGACGGAGGGGGTACTATATA 59.417 54.545 0.00 0.00 0.00 0.86
7007 7387 1.360507 GGGACGGAGGGGGTACTATAT 59.639 57.143 0.00 0.00 0.00 0.86
7008 7388 0.779997 GGGACGGAGGGGGTACTATA 59.220 60.000 0.00 0.00 0.00 1.31
7009 7389 1.298906 TGGGACGGAGGGGGTACTAT 61.299 60.000 0.00 0.00 0.00 2.12
7010 7390 1.517538 TTGGGACGGAGGGGGTACTA 61.518 60.000 0.00 0.00 0.00 1.82
7011 7391 2.817420 CTTGGGACGGAGGGGGTACT 62.817 65.000 0.00 0.00 0.00 2.73
7012 7392 2.284847 TTGGGACGGAGGGGGTAC 60.285 66.667 0.00 0.00 0.00 3.34
7013 7393 2.039951 CTTGGGACGGAGGGGGTA 59.960 66.667 0.00 0.00 0.00 3.69
7017 7397 4.452733 GACGCTTGGGACGGAGGG 62.453 72.222 0.00 0.00 34.30 4.30
7018 7398 1.601419 TAAGACGCTTGGGACGGAGG 61.601 60.000 2.86 0.00 34.00 4.30
7019 7399 0.458025 GTAAGACGCTTGGGACGGAG 60.458 60.000 2.86 0.00 34.00 4.63
7020 7400 1.180456 TGTAAGACGCTTGGGACGGA 61.180 55.000 2.86 0.00 34.00 4.69
7021 7401 0.108329 ATGTAAGACGCTTGGGACGG 60.108 55.000 2.86 0.00 34.00 4.79
7022 7402 1.722011 AATGTAAGACGCTTGGGACG 58.278 50.000 2.86 0.00 0.00 4.79
7023 7403 3.560068 CCATAATGTAAGACGCTTGGGAC 59.440 47.826 2.86 0.00 0.00 4.46
7024 7404 3.433031 CCCATAATGTAAGACGCTTGGGA 60.433 47.826 0.00 0.00 44.36 4.37
7025 7405 2.878406 CCCATAATGTAAGACGCTTGGG 59.122 50.000 2.86 0.00 36.86 4.12
7026 7406 3.804036 TCCCATAATGTAAGACGCTTGG 58.196 45.455 2.86 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.