Multiple sequence alignment - TraesCS1B01G081000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G081000 chr1B 100.000 2488 0 0 1 2488 63613431 63615918 0.000000e+00 4595
1 TraesCS1B01G081000 chr1B 95.618 2008 73 3 1 2008 63758428 63760420 0.000000e+00 3206
2 TraesCS1B01G081000 chr1B 93.310 2003 131 3 1 2001 63808032 63810033 0.000000e+00 2953
3 TraesCS1B01G081000 chr1B 93.769 1958 119 3 53 2008 63479073 63481029 0.000000e+00 2937
4 TraesCS1B01G081000 chr1B 93.007 1959 126 6 53 2008 63467841 63469791 0.000000e+00 2848
5 TraesCS1B01G081000 chr1B 94.523 1771 91 4 1 1766 63888320 63890089 0.000000e+00 2728
6 TraesCS1B01G081000 chr1B 87.810 1370 136 20 330 1682 63201570 63202925 0.000000e+00 1576
7 TraesCS1B01G081000 chr1A 92.442 1998 135 9 1 1993 43393022 43391036 0.000000e+00 2839
8 TraesCS1B01G081000 chr1A 91.982 2008 145 10 1 2004 43272405 43270410 0.000000e+00 2802
9 TraesCS1B01G081000 chr1A 87.290 417 47 6 7 419 43950536 43950950 2.900000e-129 472
10 TraesCS1B01G081000 chr1A 81.416 226 25 14 118 330 590863742 590863521 4.260000e-38 169
11 TraesCS1B01G081000 chr1D 90.705 1517 112 26 495 2004 44628791 44630285 0.000000e+00 1993
12 TraesCS1B01G081000 chr1D 91.980 1409 96 11 615 2008 43823094 43824500 0.000000e+00 1960
13 TraesCS1B01G081000 chr1D 91.553 1397 89 16 615 2008 44275012 44276382 0.000000e+00 1899
14 TraesCS1B01G081000 chr3B 98.333 480 8 0 2009 2488 682664308 682663829 0.000000e+00 843
15 TraesCS1B01G081000 chr3B 97.308 483 13 0 2006 2488 11449036 11448554 0.000000e+00 821
16 TraesCS1B01G081000 chr2B 98.333 480 8 0 2009 2488 695719857 695720336 0.000000e+00 843
17 TraesCS1B01G081000 chr6B 97.713 481 11 0 2008 2488 587124023 587123543 0.000000e+00 828
18 TraesCS1B01G081000 chr6B 97.704 479 11 0 2010 2488 51618673 51618195 0.000000e+00 824
19 TraesCS1B01G081000 chr5B 97.708 480 11 0 2009 2488 477823237 477823716 0.000000e+00 826
20 TraesCS1B01G081000 chr5B 97.708 480 11 0 2009 2488 487358152 487358631 0.000000e+00 826
21 TraesCS1B01G081000 chr5B 97.131 488 13 1 2001 2488 482270899 482270413 0.000000e+00 822
22 TraesCS1B01G081000 chr5B 97.704 479 10 1 2010 2488 526746345 526745868 0.000000e+00 822


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G081000 chr1B 63613431 63615918 2487 False 4595 4595 100.000 1 2488 1 chr1B.!!$F4 2487
1 TraesCS1B01G081000 chr1B 63758428 63760420 1992 False 3206 3206 95.618 1 2008 1 chr1B.!!$F5 2007
2 TraesCS1B01G081000 chr1B 63808032 63810033 2001 False 2953 2953 93.310 1 2001 1 chr1B.!!$F6 2000
3 TraesCS1B01G081000 chr1B 63479073 63481029 1956 False 2937 2937 93.769 53 2008 1 chr1B.!!$F3 1955
4 TraesCS1B01G081000 chr1B 63467841 63469791 1950 False 2848 2848 93.007 53 2008 1 chr1B.!!$F2 1955
5 TraesCS1B01G081000 chr1B 63888320 63890089 1769 False 2728 2728 94.523 1 1766 1 chr1B.!!$F7 1765
6 TraesCS1B01G081000 chr1B 63201570 63202925 1355 False 1576 1576 87.810 330 1682 1 chr1B.!!$F1 1352
7 TraesCS1B01G081000 chr1A 43391036 43393022 1986 True 2839 2839 92.442 1 1993 1 chr1A.!!$R2 1992
8 TraesCS1B01G081000 chr1A 43270410 43272405 1995 True 2802 2802 91.982 1 2004 1 chr1A.!!$R1 2003
9 TraesCS1B01G081000 chr1D 44628791 44630285 1494 False 1993 1993 90.705 495 2004 1 chr1D.!!$F3 1509
10 TraesCS1B01G081000 chr1D 43823094 43824500 1406 False 1960 1960 91.980 615 2008 1 chr1D.!!$F1 1393
11 TraesCS1B01G081000 chr1D 44275012 44276382 1370 False 1899 1899 91.553 615 2008 1 chr1D.!!$F2 1393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.109781 CATCAACCTGAAAACGGGCG 60.110 55.000 0.0 0.00 0.00 6.13 F
273 274 1.134580 ACAGACGAGATCCAATGGCTG 60.135 52.381 0.0 5.64 0.00 4.85 F
999 1025 3.889815 AGCAGATACAAAAGCCATAGCA 58.110 40.909 0.0 0.00 43.56 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1147 1173 0.027455 CACACGACACAACATGCGTT 59.973 50.0 0.0 0.0 38.46 4.84 R
1160 1186 0.179124 GTTTGCCTTTTGCCACACGA 60.179 50.0 0.0 0.0 40.16 4.35 R
2434 2478 0.030369 CGGAGATACCCGTAGTGCAC 59.970 60.0 9.4 9.4 44.23 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.288335 TCTCTAGAACCCCTGGAGGAC 59.712 57.143 8.04 2.84 46.77 3.85
83 84 1.548269 TGGGAAATGGGCGAAATGAAC 59.452 47.619 0.00 0.00 0.00 3.18
184 185 0.109781 CATCAACCTGAAAACGGGCG 60.110 55.000 0.00 0.00 0.00 6.13
273 274 1.134580 ACAGACGAGATCCAATGGCTG 60.135 52.381 0.00 5.64 0.00 4.85
656 664 5.078411 AGGAGTTCATGTACACACTCATC 57.922 43.478 23.41 13.06 37.92 2.92
783 796 6.014771 TGTATGGTGTATCCTCTAGAGTGT 57.985 41.667 18.42 8.91 37.07 3.55
819 833 9.970395 ACATATTAATTGTTTGATATGGTGCTG 57.030 29.630 12.34 0.00 42.12 4.41
999 1025 3.889815 AGCAGATACAAAAGCCATAGCA 58.110 40.909 0.00 0.00 43.56 3.49
1147 1173 5.714047 CAAATCCGAAGATAGATCCATCGA 58.286 41.667 13.80 0.00 38.28 3.59
1160 1186 0.516877 CCATCGAACGCATGTTGTGT 59.483 50.000 0.00 0.00 43.87 3.72
1284 1310 2.270352 AGAAGCCGTTTTCACATGGA 57.730 45.000 0.00 0.00 0.00 3.41
1577 1607 6.538263 AGCTTTCCTTTCAGATCTGTAAGTT 58.462 36.000 29.36 16.59 36.59 2.66
1617 1647 9.584839 CAGAAAAGTTTATGTTAAGCATTTTGC 57.415 29.630 0.00 0.00 45.46 3.68
1793 1831 5.649782 AAGTTTGAAACATATGCCAGGAG 57.350 39.130 11.02 0.00 0.00 3.69
1813 1851 4.190001 GAGGAGATCGGGACCTTTAAAAC 58.810 47.826 0.00 0.00 33.89 2.43
1996 2040 5.211973 ACCTGAGCTAGACTAATGAATGGA 58.788 41.667 0.00 0.00 0.00 3.41
2008 2052 0.037326 TGAATGGAGTGTGTCGCCTC 60.037 55.000 0.00 0.00 36.93 4.70
2009 2053 0.247736 GAATGGAGTGTGTCGCCTCT 59.752 55.000 0.00 0.00 36.93 3.69
2010 2054 0.036952 AATGGAGTGTGTCGCCTCTG 60.037 55.000 0.00 0.00 36.93 3.35
2011 2055 1.188219 ATGGAGTGTGTCGCCTCTGT 61.188 55.000 0.00 0.00 36.93 3.41
2012 2056 1.367840 GGAGTGTGTCGCCTCTGTT 59.632 57.895 0.00 0.00 33.15 3.16
2013 2057 0.946221 GGAGTGTGTCGCCTCTGTTG 60.946 60.000 0.00 0.00 33.15 3.33
2014 2058 0.946221 GAGTGTGTCGCCTCTGTTGG 60.946 60.000 0.00 0.00 0.00 3.77
2015 2059 1.069090 GTGTGTCGCCTCTGTTGGA 59.931 57.895 0.00 0.00 0.00 3.53
2016 2060 0.531974 GTGTGTCGCCTCTGTTGGAA 60.532 55.000 0.00 0.00 0.00 3.53
2017 2061 0.179234 TGTGTCGCCTCTGTTGGAAA 59.821 50.000 0.00 0.00 0.00 3.13
2018 2062 1.202758 TGTGTCGCCTCTGTTGGAAAT 60.203 47.619 0.00 0.00 0.00 2.17
2019 2063 2.037902 TGTGTCGCCTCTGTTGGAAATA 59.962 45.455 0.00 0.00 0.00 1.40
2020 2064 3.270877 GTGTCGCCTCTGTTGGAAATAT 58.729 45.455 0.00 0.00 0.00 1.28
2021 2065 3.063997 GTGTCGCCTCTGTTGGAAATATG 59.936 47.826 0.00 0.00 0.00 1.78
2022 2066 2.032178 GTCGCCTCTGTTGGAAATATGC 59.968 50.000 0.00 0.00 0.00 3.14
2023 2067 1.334869 CGCCTCTGTTGGAAATATGCC 59.665 52.381 0.00 0.00 0.00 4.40
2024 2068 1.683385 GCCTCTGTTGGAAATATGCCC 59.317 52.381 0.00 0.00 0.00 5.36
2025 2069 2.687914 GCCTCTGTTGGAAATATGCCCT 60.688 50.000 0.00 0.00 0.00 5.19
2026 2070 3.435026 GCCTCTGTTGGAAATATGCCCTA 60.435 47.826 0.00 0.00 0.00 3.53
2027 2071 4.392940 CCTCTGTTGGAAATATGCCCTAG 58.607 47.826 0.00 0.00 0.00 3.02
2028 2072 4.103153 CCTCTGTTGGAAATATGCCCTAGA 59.897 45.833 0.00 0.00 0.00 2.43
2029 2073 5.296151 TCTGTTGGAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 0.00 2.43
2030 2074 4.103153 TCTGTTGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
2046 2090 7.839680 CCCTAGAGGCAATAATAAAATGGTT 57.160 36.000 0.00 0.00 0.00 3.67
2047 2091 8.934023 CCCTAGAGGCAATAATAAAATGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
2048 2092 9.533831 CCCTAGAGGCAATAATAAAATGGTTAT 57.466 33.333 0.00 0.00 0.00 1.89
2090 2134 9.955208 TTCATGATATTTGTCTGTTATTCATGC 57.045 29.630 0.00 0.00 33.46 4.06
2091 2135 9.346005 TCATGATATTTGTCTGTTATTCATGCT 57.654 29.630 0.00 0.00 33.46 3.79
2138 2182 7.979037 CGTAATACACGTGTGAATACATAGAC 58.021 38.462 30.83 14.41 45.82 2.59
2139 2183 7.112565 CGTAATACACGTGTGAATACATAGACC 59.887 40.741 30.83 6.57 45.82 3.85
2140 2184 4.794278 ACACGTGTGAATACATAGACCA 57.206 40.909 22.71 0.00 39.39 4.02
2141 2185 4.491676 ACACGTGTGAATACATAGACCAC 58.508 43.478 22.71 0.00 39.39 4.16
2142 2186 4.021807 ACACGTGTGAATACATAGACCACA 60.022 41.667 22.71 0.00 39.39 4.17
2143 2187 4.926832 CACGTGTGAATACATAGACCACAA 59.073 41.667 7.58 0.00 39.13 3.33
2144 2188 4.927425 ACGTGTGAATACATAGACCACAAC 59.073 41.667 0.00 0.00 39.13 3.32
2145 2189 5.168569 CGTGTGAATACATAGACCACAACT 58.831 41.667 0.00 0.00 39.13 3.16
2146 2190 5.637810 CGTGTGAATACATAGACCACAACTT 59.362 40.000 0.00 0.00 39.13 2.66
2147 2191 6.401047 CGTGTGAATACATAGACCACAACTTG 60.401 42.308 0.00 0.00 39.13 3.16
2148 2192 6.426937 GTGTGAATACATAGACCACAACTTGT 59.573 38.462 0.00 0.00 39.13 3.16
2149 2193 6.649141 TGTGAATACATAGACCACAACTTGTC 59.351 38.462 0.00 0.00 35.16 3.18
2150 2194 6.092259 GTGAATACATAGACCACAACTTGTCC 59.908 42.308 0.00 0.00 31.76 4.02
2151 2195 3.418684 ACATAGACCACAACTTGTCCC 57.581 47.619 0.00 0.00 31.76 4.46
2152 2196 2.979678 ACATAGACCACAACTTGTCCCT 59.020 45.455 0.00 0.00 31.76 4.20
2153 2197 4.164981 ACATAGACCACAACTTGTCCCTA 58.835 43.478 0.00 0.00 31.76 3.53
2154 2198 4.223032 ACATAGACCACAACTTGTCCCTAG 59.777 45.833 0.00 0.00 31.76 3.02
2155 2199 2.690840 AGACCACAACTTGTCCCTAGT 58.309 47.619 0.00 0.00 31.76 2.57
2156 2200 2.368875 AGACCACAACTTGTCCCTAGTG 59.631 50.000 0.00 0.00 31.76 2.74
2157 2201 2.367567 GACCACAACTTGTCCCTAGTGA 59.632 50.000 0.00 0.00 0.00 3.41
2158 2202 2.368875 ACCACAACTTGTCCCTAGTGAG 59.631 50.000 0.00 0.00 0.00 3.51
2159 2203 2.417719 CACAACTTGTCCCTAGTGAGC 58.582 52.381 0.00 0.00 0.00 4.26
2160 2204 1.348036 ACAACTTGTCCCTAGTGAGCC 59.652 52.381 0.00 0.00 0.00 4.70
2161 2205 1.625818 CAACTTGTCCCTAGTGAGCCT 59.374 52.381 0.00 0.00 0.00 4.58
2162 2206 1.562783 ACTTGTCCCTAGTGAGCCTC 58.437 55.000 0.00 0.00 0.00 4.70
2163 2207 1.077993 ACTTGTCCCTAGTGAGCCTCT 59.922 52.381 0.00 0.00 0.00 3.69
2164 2208 2.312140 ACTTGTCCCTAGTGAGCCTCTA 59.688 50.000 0.00 0.00 0.00 2.43
2165 2209 2.738587 TGTCCCTAGTGAGCCTCTAG 57.261 55.000 0.00 0.00 35.86 2.43
2166 2210 1.923850 TGTCCCTAGTGAGCCTCTAGT 59.076 52.381 0.00 0.00 34.72 2.57
2167 2211 2.312140 TGTCCCTAGTGAGCCTCTAGTT 59.688 50.000 0.00 0.00 34.72 2.24
2168 2212 2.691011 GTCCCTAGTGAGCCTCTAGTTG 59.309 54.545 0.00 3.20 34.72 3.16
2169 2213 2.581246 TCCCTAGTGAGCCTCTAGTTGA 59.419 50.000 0.00 4.76 34.72 3.18
2170 2214 2.955660 CCCTAGTGAGCCTCTAGTTGAG 59.044 54.545 0.00 0.00 42.30 3.02
2171 2215 3.626222 CCCTAGTGAGCCTCTAGTTGAGT 60.626 52.174 0.89 0.00 41.11 3.41
2172 2216 4.385421 CCCTAGTGAGCCTCTAGTTGAGTA 60.385 50.000 0.89 0.00 41.11 2.59
2173 2217 4.819630 CCTAGTGAGCCTCTAGTTGAGTAG 59.180 50.000 0.89 0.00 41.11 2.57
2174 2218 3.020984 AGTGAGCCTCTAGTTGAGTAGC 58.979 50.000 0.89 0.00 41.11 3.58
2175 2219 3.020984 GTGAGCCTCTAGTTGAGTAGCT 58.979 50.000 5.34 5.34 41.05 3.32
2176 2220 3.982576 GAGCCTCTAGTTGAGTAGCTC 57.017 52.381 13.76 13.76 44.03 4.09
2177 2221 2.289547 GAGCCTCTAGTTGAGTAGCTCG 59.710 54.545 13.76 0.00 42.64 5.03
2178 2222 2.018515 GCCTCTAGTTGAGTAGCTCGT 58.981 52.381 0.00 0.00 41.11 4.18
2179 2223 2.424246 GCCTCTAGTTGAGTAGCTCGTT 59.576 50.000 0.00 0.00 41.11 3.85
2180 2224 3.732471 GCCTCTAGTTGAGTAGCTCGTTG 60.732 52.174 0.00 0.00 41.11 4.10
2181 2225 3.690139 CCTCTAGTTGAGTAGCTCGTTGA 59.310 47.826 0.00 0.00 41.11 3.18
2182 2226 4.336993 CCTCTAGTTGAGTAGCTCGTTGAT 59.663 45.833 0.00 0.00 41.11 2.57
2183 2227 5.487153 TCTAGTTGAGTAGCTCGTTGATC 57.513 43.478 0.00 0.00 32.35 2.92
2184 2228 4.941873 TCTAGTTGAGTAGCTCGTTGATCA 59.058 41.667 0.00 0.00 32.35 2.92
2185 2229 4.521130 AGTTGAGTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 32.35 2.57
2186 2230 4.238514 AGTTGAGTAGCTCGTTGATCAAC 58.761 43.478 25.68 25.68 44.22 3.18
2187 2231 3.934457 TGAGTAGCTCGTTGATCAACA 57.066 42.857 32.06 20.24 41.20 3.33
2188 2232 3.838120 TGAGTAGCTCGTTGATCAACAG 58.162 45.455 32.06 26.93 41.20 3.16
2189 2233 3.506067 TGAGTAGCTCGTTGATCAACAGA 59.494 43.478 32.06 26.81 41.20 3.41
2190 2234 4.158579 TGAGTAGCTCGTTGATCAACAGAT 59.841 41.667 32.06 26.87 41.20 2.90
2191 2235 5.357032 TGAGTAGCTCGTTGATCAACAGATA 59.643 40.000 32.06 26.05 41.20 1.98
2192 2236 5.826586 AGTAGCTCGTTGATCAACAGATAG 58.173 41.667 32.06 23.64 41.20 2.08
2193 2237 4.727507 AGCTCGTTGATCAACAGATAGT 57.272 40.909 32.06 16.47 41.20 2.12
2194 2238 4.677584 AGCTCGTTGATCAACAGATAGTC 58.322 43.478 32.06 19.15 41.20 2.59
2195 2239 4.158579 AGCTCGTTGATCAACAGATAGTCA 59.841 41.667 32.06 11.38 41.20 3.41
2196 2240 5.046529 GCTCGTTGATCAACAGATAGTCAT 58.953 41.667 32.06 0.00 41.20 3.06
2197 2241 5.051173 GCTCGTTGATCAACAGATAGTCATG 60.051 44.000 32.06 18.25 41.20 3.07
2198 2242 5.351458 TCGTTGATCAACAGATAGTCATGG 58.649 41.667 32.06 15.04 41.20 3.66
2199 2243 5.105351 TCGTTGATCAACAGATAGTCATGGT 60.105 40.000 32.06 0.00 41.20 3.55
2200 2244 5.582269 CGTTGATCAACAGATAGTCATGGTT 59.418 40.000 32.06 0.00 41.20 3.67
2201 2245 6.092670 CGTTGATCAACAGATAGTCATGGTTT 59.907 38.462 32.06 0.00 41.20 3.27
2202 2246 7.467623 GTTGATCAACAGATAGTCATGGTTTC 58.532 38.462 29.43 0.00 40.84 2.78
2203 2247 6.115446 TGATCAACAGATAGTCATGGTTTCC 58.885 40.000 0.00 0.00 0.00 3.13
2204 2248 5.762179 TCAACAGATAGTCATGGTTTCCT 57.238 39.130 0.00 0.00 0.00 3.36
2205 2249 5.491070 TCAACAGATAGTCATGGTTTCCTG 58.509 41.667 0.00 0.00 0.00 3.86
2206 2250 5.248248 TCAACAGATAGTCATGGTTTCCTGA 59.752 40.000 10.65 0.00 0.00 3.86
2207 2251 5.091261 ACAGATAGTCATGGTTTCCTGAC 57.909 43.478 10.65 8.96 41.65 3.51
2213 2257 4.487714 GTCATGGTTTCCTGACTATGGA 57.512 45.455 0.00 0.00 38.56 3.41
2214 2258 4.192317 GTCATGGTTTCCTGACTATGGAC 58.808 47.826 0.00 0.00 38.56 4.02
2215 2259 3.843619 TCATGGTTTCCTGACTATGGACA 59.156 43.478 0.00 0.00 38.56 4.02
2216 2260 4.474651 TCATGGTTTCCTGACTATGGACAT 59.525 41.667 0.00 0.00 38.56 3.06
2217 2261 4.927267 TGGTTTCCTGACTATGGACATT 57.073 40.909 0.00 0.00 32.65 2.71
2218 2262 4.588899 TGGTTTCCTGACTATGGACATTG 58.411 43.478 0.00 0.00 32.65 2.82
2219 2263 3.947834 GGTTTCCTGACTATGGACATTGG 59.052 47.826 0.00 0.00 32.65 3.16
2220 2264 4.324254 GGTTTCCTGACTATGGACATTGGA 60.324 45.833 0.00 0.00 32.65 3.53
2221 2265 5.440610 GTTTCCTGACTATGGACATTGGAT 58.559 41.667 0.00 0.00 32.65 3.41
2222 2266 4.694760 TCCTGACTATGGACATTGGATG 57.305 45.455 0.00 0.00 0.00 3.51
2235 2279 5.756195 ACATTGGATGTCATTGATAACGG 57.244 39.130 0.00 0.00 39.92 4.44
2236 2280 4.580167 ACATTGGATGTCATTGATAACGGG 59.420 41.667 0.00 0.00 39.92 5.28
2237 2281 4.495690 TTGGATGTCATTGATAACGGGA 57.504 40.909 0.00 0.00 0.00 5.14
2238 2282 4.705110 TGGATGTCATTGATAACGGGAT 57.295 40.909 0.00 0.00 0.00 3.85
2239 2283 4.641396 TGGATGTCATTGATAACGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
2240 2284 4.102367 TGGATGTCATTGATAACGGGATCA 59.898 41.667 0.00 0.00 33.96 2.92
2241 2285 4.452455 GGATGTCATTGATAACGGGATCAC 59.548 45.833 0.00 0.00 35.56 3.06
2242 2286 4.479786 TGTCATTGATAACGGGATCACA 57.520 40.909 0.00 0.00 35.56 3.58
2243 2287 5.034852 TGTCATTGATAACGGGATCACAT 57.965 39.130 0.00 0.00 35.56 3.21
2244 2288 5.056480 TGTCATTGATAACGGGATCACATC 58.944 41.667 0.00 0.00 35.56 3.06
2245 2289 5.056480 GTCATTGATAACGGGATCACATCA 58.944 41.667 0.00 0.00 35.56 3.07
2246 2290 5.702670 GTCATTGATAACGGGATCACATCAT 59.297 40.000 0.00 0.00 35.56 2.45
2247 2291 6.205464 GTCATTGATAACGGGATCACATCATT 59.795 38.462 0.00 0.00 35.56 2.57
2248 2292 7.387673 GTCATTGATAACGGGATCACATCATTA 59.612 37.037 0.00 0.00 35.56 1.90
2249 2293 7.603784 TCATTGATAACGGGATCACATCATTAG 59.396 37.037 0.00 0.00 35.56 1.73
2250 2294 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
2251 2295 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
2252 2296 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
2253 2297 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
2254 2298 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
2255 2299 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
2256 2300 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
2257 2301 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
2258 2302 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
2266 2310 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
2267 2311 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
2268 2312 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
2269 2313 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
2270 2314 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
2271 2315 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
2272 2316 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
2273 2317 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
2274 2318 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
2275 2319 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
2276 2320 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
2277 2321 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
2278 2322 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
2279 2323 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
2280 2324 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
2281 2325 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
2282 2326 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
2283 2327 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
2284 2328 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
2285 2329 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
2286 2330 3.372025 GGACAAGACCCAATCCTAAGCAT 60.372 47.826 0.00 0.00 0.00 3.79
2287 2331 4.141482 GGACAAGACCCAATCCTAAGCATA 60.141 45.833 0.00 0.00 0.00 3.14
2288 2332 5.041191 ACAAGACCCAATCCTAAGCATAG 57.959 43.478 0.00 0.00 0.00 2.23
2289 2333 3.778954 AGACCCAATCCTAAGCATAGC 57.221 47.619 0.00 0.00 0.00 2.97
2290 2334 3.321950 AGACCCAATCCTAAGCATAGCT 58.678 45.455 0.00 0.00 42.56 3.32
2291 2335 3.326297 AGACCCAATCCTAAGCATAGCTC 59.674 47.826 0.00 0.00 38.25 4.09
2292 2336 3.048600 ACCCAATCCTAAGCATAGCTCA 58.951 45.455 0.00 0.00 38.25 4.26
2293 2337 3.459598 ACCCAATCCTAAGCATAGCTCAA 59.540 43.478 0.00 0.00 38.25 3.02
2294 2338 4.079787 ACCCAATCCTAAGCATAGCTCAAA 60.080 41.667 0.00 0.00 38.25 2.69
2295 2339 4.518211 CCCAATCCTAAGCATAGCTCAAAG 59.482 45.833 0.00 0.00 38.25 2.77
2296 2340 5.371526 CCAATCCTAAGCATAGCTCAAAGA 58.628 41.667 0.00 0.00 38.25 2.52
2297 2341 6.002704 CCAATCCTAAGCATAGCTCAAAGAT 58.997 40.000 0.00 0.00 38.25 2.40
2298 2342 6.149142 CCAATCCTAAGCATAGCTCAAAGATC 59.851 42.308 0.00 0.00 38.25 2.75
2299 2343 4.876125 TCCTAAGCATAGCTCAAAGATCG 58.124 43.478 0.00 0.00 38.25 3.69
2300 2344 4.342378 TCCTAAGCATAGCTCAAAGATCGT 59.658 41.667 0.00 0.00 38.25 3.73
2301 2345 4.447054 CCTAAGCATAGCTCAAAGATCGTG 59.553 45.833 0.00 0.00 38.25 4.35
2302 2346 3.533606 AGCATAGCTCAAAGATCGTGT 57.466 42.857 0.00 0.00 30.62 4.49
2303 2347 4.655762 AGCATAGCTCAAAGATCGTGTA 57.344 40.909 0.00 0.00 30.62 2.90
2304 2348 4.615949 AGCATAGCTCAAAGATCGTGTAG 58.384 43.478 0.00 0.00 30.62 2.74
2305 2349 4.098654 AGCATAGCTCAAAGATCGTGTAGT 59.901 41.667 0.00 0.00 30.62 2.73
2306 2350 4.806247 GCATAGCTCAAAGATCGTGTAGTT 59.194 41.667 0.00 0.00 0.00 2.24
2307 2351 5.051374 GCATAGCTCAAAGATCGTGTAGTTC 60.051 44.000 0.00 0.00 0.00 3.01
2308 2352 3.502920 AGCTCAAAGATCGTGTAGTTCG 58.497 45.455 0.18 0.00 0.00 3.95
2309 2353 2.028165 GCTCAAAGATCGTGTAGTTCGC 59.972 50.000 0.18 0.00 0.00 4.70
2310 2354 3.502920 CTCAAAGATCGTGTAGTTCGCT 58.497 45.455 0.18 0.00 0.00 4.93
2311 2355 3.909430 TCAAAGATCGTGTAGTTCGCTT 58.091 40.909 0.18 0.00 0.00 4.68
2312 2356 5.050644 TCAAAGATCGTGTAGTTCGCTTA 57.949 39.130 0.18 0.00 0.00 3.09
2313 2357 5.093457 TCAAAGATCGTGTAGTTCGCTTAG 58.907 41.667 0.18 0.00 0.00 2.18
2314 2358 3.067721 AGATCGTGTAGTTCGCTTAGC 57.932 47.619 0.00 0.00 0.00 3.09
2315 2359 2.683867 AGATCGTGTAGTTCGCTTAGCT 59.316 45.455 1.76 0.00 0.00 3.32
2316 2360 3.875727 AGATCGTGTAGTTCGCTTAGCTA 59.124 43.478 1.76 0.00 0.00 3.32
2317 2361 3.670311 TCGTGTAGTTCGCTTAGCTAG 57.330 47.619 1.76 0.00 0.00 3.42
2318 2362 3.264947 TCGTGTAGTTCGCTTAGCTAGA 58.735 45.455 1.76 0.00 0.00 2.43
2319 2363 3.309138 TCGTGTAGTTCGCTTAGCTAGAG 59.691 47.826 1.76 0.00 0.00 2.43
2320 2364 3.364946 GTGTAGTTCGCTTAGCTAGAGC 58.635 50.000 14.34 14.34 42.49 4.09
2335 2379 5.376854 GCTAGAGCTTTTCCAAATGTCAA 57.623 39.130 0.00 0.00 38.21 3.18
2336 2380 5.397326 GCTAGAGCTTTTCCAAATGTCAAG 58.603 41.667 0.00 0.00 38.21 3.02
2337 2381 5.048434 GCTAGAGCTTTTCCAAATGTCAAGT 60.048 40.000 0.00 0.00 38.21 3.16
2338 2382 6.149474 GCTAGAGCTTTTCCAAATGTCAAGTA 59.851 38.462 0.00 0.00 38.21 2.24
2339 2383 7.148171 GCTAGAGCTTTTCCAAATGTCAAGTAT 60.148 37.037 0.00 0.00 38.21 2.12
2340 2384 7.150783 AGAGCTTTTCCAAATGTCAAGTATC 57.849 36.000 0.00 0.00 0.00 2.24
2341 2385 6.716628 AGAGCTTTTCCAAATGTCAAGTATCA 59.283 34.615 0.00 0.00 0.00 2.15
2342 2386 7.395489 AGAGCTTTTCCAAATGTCAAGTATCAT 59.605 33.333 0.00 0.00 0.00 2.45
2343 2387 7.899973 AGCTTTTCCAAATGTCAAGTATCATT 58.100 30.769 0.00 0.00 36.07 2.57
2344 2388 8.370182 AGCTTTTCCAAATGTCAAGTATCATTT 58.630 29.630 0.00 0.00 42.53 2.32
2345 2389 8.650714 GCTTTTCCAAATGTCAAGTATCATTTC 58.349 33.333 0.00 0.00 40.70 2.17
2346 2390 9.143631 CTTTTCCAAATGTCAAGTATCATTTCC 57.856 33.333 0.00 0.00 40.70 3.13
2347 2391 8.421249 TTTCCAAATGTCAAGTATCATTTCCT 57.579 30.769 0.00 0.00 40.70 3.36
2348 2392 8.421249 TTCCAAATGTCAAGTATCATTTCCTT 57.579 30.769 0.00 0.00 40.70 3.36
2349 2393 9.527157 TTCCAAATGTCAAGTATCATTTCCTTA 57.473 29.630 0.00 0.00 40.70 2.69
2350 2394 9.177608 TCCAAATGTCAAGTATCATTTCCTTAG 57.822 33.333 0.00 0.00 40.70 2.18
2351 2395 9.177608 CCAAATGTCAAGTATCATTTCCTTAGA 57.822 33.333 0.00 0.00 40.70 2.10
2352 2396 9.994432 CAAATGTCAAGTATCATTTCCTTAGAC 57.006 33.333 0.00 0.00 40.70 2.59
2353 2397 8.738645 AATGTCAAGTATCATTTCCTTAGACC 57.261 34.615 0.00 0.00 31.35 3.85
2354 2398 7.252612 TGTCAAGTATCATTTCCTTAGACCA 57.747 36.000 0.00 0.00 0.00 4.02
2355 2399 7.861629 TGTCAAGTATCATTTCCTTAGACCAT 58.138 34.615 0.00 0.00 0.00 3.55
2356 2400 7.770433 TGTCAAGTATCATTTCCTTAGACCATG 59.230 37.037 0.00 0.00 0.00 3.66
2357 2401 7.987458 GTCAAGTATCATTTCCTTAGACCATGA 59.013 37.037 0.00 0.00 0.00 3.07
2358 2402 8.206867 TCAAGTATCATTTCCTTAGACCATGAG 58.793 37.037 0.00 0.00 29.44 2.90
2359 2403 7.921041 AGTATCATTTCCTTAGACCATGAGA 57.079 36.000 0.00 0.00 29.44 3.27
2360 2404 8.503428 AGTATCATTTCCTTAGACCATGAGAT 57.497 34.615 0.00 0.00 29.44 2.75
2361 2405 8.943085 AGTATCATTTCCTTAGACCATGAGATT 58.057 33.333 0.00 0.00 29.44 2.40
2362 2406 8.997323 GTATCATTTCCTTAGACCATGAGATTG 58.003 37.037 0.00 0.00 29.44 2.67
2363 2407 6.962182 TCATTTCCTTAGACCATGAGATTGT 58.038 36.000 0.00 0.00 0.00 2.71
2364 2408 6.825213 TCATTTCCTTAGACCATGAGATTGTG 59.175 38.462 0.00 0.00 0.00 3.33
2365 2409 4.142609 TCCTTAGACCATGAGATTGTGC 57.857 45.455 0.00 0.00 0.00 4.57
2366 2410 3.519107 TCCTTAGACCATGAGATTGTGCA 59.481 43.478 0.00 0.00 0.00 4.57
2367 2411 4.019411 TCCTTAGACCATGAGATTGTGCAA 60.019 41.667 0.00 0.00 0.00 4.08
2368 2412 4.095483 CCTTAGACCATGAGATTGTGCAAC 59.905 45.833 0.00 0.00 37.35 4.17
2369 2413 3.430042 AGACCATGAGATTGTGCAACT 57.570 42.857 0.00 0.00 38.04 3.16
2370 2414 3.341823 AGACCATGAGATTGTGCAACTC 58.658 45.455 0.00 0.00 38.04 3.01
2371 2415 2.421424 GACCATGAGATTGTGCAACTCC 59.579 50.000 0.00 0.00 38.04 3.85
2372 2416 1.747355 CCATGAGATTGTGCAACTCCC 59.253 52.381 0.00 0.00 38.04 4.30
2373 2417 1.399440 CATGAGATTGTGCAACTCCCG 59.601 52.381 0.00 0.00 38.04 5.14
2374 2418 0.321564 TGAGATTGTGCAACTCCCGG 60.322 55.000 0.00 0.00 38.04 5.73
2375 2419 0.036388 GAGATTGTGCAACTCCCGGA 60.036 55.000 0.73 0.00 38.04 5.14
2376 2420 0.620556 AGATTGTGCAACTCCCGGAT 59.379 50.000 0.73 0.00 38.04 4.18
2377 2421 1.837439 AGATTGTGCAACTCCCGGATA 59.163 47.619 0.73 0.00 38.04 2.59
2378 2422 1.940613 GATTGTGCAACTCCCGGATAC 59.059 52.381 0.73 0.00 38.04 2.24
2379 2423 0.035820 TTGTGCAACTCCCGGATACC 60.036 55.000 0.73 0.00 38.04 2.73
2380 2424 2.233605 TGTGCAACTCCCGGATACCG 62.234 60.000 0.73 3.03 42.30 4.02
2381 2425 1.985662 TGCAACTCCCGGATACCGT 60.986 57.895 0.73 0.00 46.80 4.83
2382 2426 0.683828 TGCAACTCCCGGATACCGTA 60.684 55.000 0.73 0.00 46.80 4.02
2383 2427 0.031721 GCAACTCCCGGATACCGTAG 59.968 60.000 0.73 8.43 46.80 3.51
2398 2442 2.981859 CGTAGGAGTGCTTTGGGTAT 57.018 50.000 0.00 0.00 0.00 2.73
2400 2444 3.714391 CGTAGGAGTGCTTTGGGTATAC 58.286 50.000 0.00 0.00 0.00 1.47
2401 2445 3.492137 CGTAGGAGTGCTTTGGGTATACC 60.492 52.174 13.99 13.99 40.81 2.73
2414 2458 4.609691 GGGTATACCAAACGTCACAATG 57.390 45.455 23.33 0.00 39.85 2.82
2415 2459 4.004982 GGGTATACCAAACGTCACAATGT 58.995 43.478 23.33 0.00 39.85 2.71
2416 2460 5.177326 GGGTATACCAAACGTCACAATGTA 58.823 41.667 23.33 0.00 39.85 2.29
2417 2461 5.642919 GGGTATACCAAACGTCACAATGTAA 59.357 40.000 23.33 0.00 39.85 2.41
2418 2462 6.402442 GGGTATACCAAACGTCACAATGTAAC 60.402 42.308 23.33 0.00 39.85 2.50
2419 2463 6.369615 GGTATACCAAACGTCACAATGTAACT 59.630 38.462 17.44 0.00 35.64 2.24
2420 2464 4.545823 ACCAAACGTCACAATGTAACTG 57.454 40.909 0.00 0.00 0.00 3.16
2421 2465 3.314080 ACCAAACGTCACAATGTAACTGG 59.686 43.478 0.00 0.00 0.00 4.00
2422 2466 3.304391 CCAAACGTCACAATGTAACTGGG 60.304 47.826 0.00 0.00 0.00 4.45
2423 2467 2.922740 ACGTCACAATGTAACTGGGT 57.077 45.000 0.00 0.00 0.00 4.51
2424 2468 2.489971 ACGTCACAATGTAACTGGGTG 58.510 47.619 0.00 0.00 0.00 4.61
2425 2469 2.103432 ACGTCACAATGTAACTGGGTGA 59.897 45.455 0.00 0.00 36.24 4.02
2429 2473 5.755409 TCACAATGTAACTGGGTGACTAT 57.245 39.130 0.00 0.00 33.88 2.12
2430 2474 6.860790 TCACAATGTAACTGGGTGACTATA 57.139 37.500 0.00 0.00 33.88 1.31
2431 2475 7.247456 TCACAATGTAACTGGGTGACTATAA 57.753 36.000 0.00 0.00 33.88 0.98
2432 2476 7.681679 TCACAATGTAACTGGGTGACTATAAA 58.318 34.615 0.00 0.00 33.88 1.40
2433 2477 7.822334 TCACAATGTAACTGGGTGACTATAAAG 59.178 37.037 0.00 0.00 33.88 1.85
2434 2478 7.065803 CACAATGTAACTGGGTGACTATAAAGG 59.934 40.741 0.00 0.00 0.00 3.11
2435 2479 6.886178 ATGTAACTGGGTGACTATAAAGGT 57.114 37.500 0.00 0.00 0.00 3.50
2436 2480 6.045072 TGTAACTGGGTGACTATAAAGGTG 57.955 41.667 0.00 0.00 0.00 4.00
2437 2481 3.629142 ACTGGGTGACTATAAAGGTGC 57.371 47.619 0.00 0.00 0.00 5.01
2438 2482 2.910319 ACTGGGTGACTATAAAGGTGCA 59.090 45.455 0.00 0.00 0.00 4.57
2439 2483 3.270877 CTGGGTGACTATAAAGGTGCAC 58.729 50.000 8.80 8.80 0.00 4.57
2440 2484 2.910319 TGGGTGACTATAAAGGTGCACT 59.090 45.455 17.98 0.00 0.00 4.40
2441 2485 4.098155 TGGGTGACTATAAAGGTGCACTA 58.902 43.478 17.98 1.23 0.00 2.74
2442 2486 4.081309 TGGGTGACTATAAAGGTGCACTAC 60.081 45.833 17.98 0.06 0.00 2.73
2443 2487 4.110482 GGTGACTATAAAGGTGCACTACG 58.890 47.826 17.98 1.40 0.00 3.51
2444 2488 4.110482 GTGACTATAAAGGTGCACTACGG 58.890 47.826 17.98 3.75 0.00 4.02
2445 2489 3.131577 TGACTATAAAGGTGCACTACGGG 59.868 47.826 17.98 4.25 0.00 5.28
2446 2490 3.102204 ACTATAAAGGTGCACTACGGGT 58.898 45.455 17.98 4.87 0.00 5.28
2447 2491 4.280819 ACTATAAAGGTGCACTACGGGTA 58.719 43.478 17.98 2.89 0.00 3.69
2448 2492 4.897670 ACTATAAAGGTGCACTACGGGTAT 59.102 41.667 17.98 8.62 0.00 2.73
2449 2493 2.685850 AAAGGTGCACTACGGGTATC 57.314 50.000 17.98 0.00 0.00 2.24
2450 2494 1.861982 AAGGTGCACTACGGGTATCT 58.138 50.000 17.98 0.00 0.00 1.98
2451 2495 1.400737 AGGTGCACTACGGGTATCTC 58.599 55.000 17.98 0.00 0.00 2.75
2452 2496 0.388294 GGTGCACTACGGGTATCTCC 59.612 60.000 17.98 0.00 0.00 3.71
2463 2507 3.166489 GGGTATCTCCGAAAGTGTCTG 57.834 52.381 0.00 0.00 37.00 3.51
2464 2508 2.496470 GGGTATCTCCGAAAGTGTCTGT 59.504 50.000 0.00 0.00 37.00 3.41
2465 2509 3.056035 GGGTATCTCCGAAAGTGTCTGTT 60.056 47.826 0.00 0.00 37.00 3.16
2466 2510 3.927142 GGTATCTCCGAAAGTGTCTGTTG 59.073 47.826 0.00 0.00 0.00 3.33
2467 2511 2.526304 TCTCCGAAAGTGTCTGTTGG 57.474 50.000 0.00 0.00 0.00 3.77
2468 2512 1.070134 TCTCCGAAAGTGTCTGTTGGG 59.930 52.381 0.00 0.00 0.00 4.12
2469 2513 0.834612 TCCGAAAGTGTCTGTTGGGT 59.165 50.000 0.00 0.00 0.00 4.51
2470 2514 1.210967 TCCGAAAGTGTCTGTTGGGTT 59.789 47.619 0.00 0.00 0.00 4.11
2471 2515 1.333619 CCGAAAGTGTCTGTTGGGTTG 59.666 52.381 0.00 0.00 0.00 3.77
2472 2516 1.333619 CGAAAGTGTCTGTTGGGTTGG 59.666 52.381 0.00 0.00 0.00 3.77
2473 2517 1.067060 GAAAGTGTCTGTTGGGTTGGC 59.933 52.381 0.00 0.00 0.00 4.52
2474 2518 0.033601 AAGTGTCTGTTGGGTTGGCA 60.034 50.000 0.00 0.00 0.00 4.92
2475 2519 0.751643 AGTGTCTGTTGGGTTGGCAC 60.752 55.000 0.00 0.00 0.00 5.01
2476 2520 1.821759 TGTCTGTTGGGTTGGCACG 60.822 57.895 0.00 0.00 0.00 5.34
2477 2521 1.525077 GTCTGTTGGGTTGGCACGA 60.525 57.895 0.00 0.00 0.00 4.35
2478 2522 1.098712 GTCTGTTGGGTTGGCACGAA 61.099 55.000 0.00 0.00 0.00 3.85
2479 2523 0.179004 TCTGTTGGGTTGGCACGAAT 60.179 50.000 0.00 0.00 0.00 3.34
2480 2524 0.240945 CTGTTGGGTTGGCACGAATC 59.759 55.000 0.00 0.00 0.00 2.52
2481 2525 1.209127 GTTGGGTTGGCACGAATCG 59.791 57.895 0.00 0.00 0.00 3.34
2482 2526 1.071642 TTGGGTTGGCACGAATCGA 59.928 52.632 10.55 0.00 0.00 3.59
2483 2527 0.953471 TTGGGTTGGCACGAATCGAG 60.953 55.000 10.55 1.74 0.00 4.04
2484 2528 1.079405 GGGTTGGCACGAATCGAGA 60.079 57.895 10.55 0.00 0.00 4.04
2485 2529 1.359459 GGGTTGGCACGAATCGAGAC 61.359 60.000 10.55 3.74 0.00 3.36
2486 2530 0.389948 GGTTGGCACGAATCGAGACT 60.390 55.000 10.55 0.00 0.00 3.24
2487 2531 0.716108 GTTGGCACGAATCGAGACTG 59.284 55.000 10.55 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 4.666532 GCTGTTGTGTGTCGCGCC 62.667 66.667 0.00 0.00 0.00 6.53
273 274 9.601217 AAATAACTACTTCACATCTATGTCCAC 57.399 33.333 0.00 0.00 39.39 4.02
352 353 9.448438 AGTTGTGCATTAATTAGACATCTACAA 57.552 29.630 0.00 0.00 0.00 2.41
388 390 6.747414 ATCTTGAAGGTATGGTACTGCATA 57.253 37.500 0.00 0.00 0.00 3.14
656 664 7.145187 TGAAGATACGAAATAACATCGAACG 57.855 36.000 2.65 0.00 42.76 3.95
894 908 5.105106 TGTGTGGGATACATGACTTCGTTAT 60.105 40.000 0.00 0.00 42.24 1.89
999 1025 5.412594 ACATAAGCACATGAGTTTCGTCATT 59.587 36.000 0.00 0.00 34.81 2.57
1147 1173 0.027455 CACACGACACAACATGCGTT 59.973 50.000 0.00 0.00 38.46 4.84
1160 1186 0.179124 GTTTGCCTTTTGCCACACGA 60.179 50.000 0.00 0.00 40.16 4.35
1275 1301 2.027653 TCCGCACTTGTATCCATGTGAA 60.028 45.455 8.28 0.00 45.07 3.18
1276 1302 1.552792 TCCGCACTTGTATCCATGTGA 59.447 47.619 8.28 0.00 45.07 3.58
1284 1310 4.243270 GTCACTTACTTCCGCACTTGTAT 58.757 43.478 0.00 0.00 0.00 2.29
1577 1607 2.708216 TTTCTGAGCACAACCTCACA 57.292 45.000 0.00 0.00 36.96 3.58
1793 1831 2.934553 CGTTTTAAAGGTCCCGATCTCC 59.065 50.000 0.00 0.00 0.00 3.71
1996 2040 1.069765 CCAACAGAGGCGACACACT 59.930 57.895 0.00 0.00 0.00 3.55
2008 2052 4.392940 CCTCTAGGGCATATTTCCAACAG 58.607 47.826 0.00 0.00 0.00 3.16
2009 2053 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
2022 2066 7.839680 AACCATTTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
2064 2108 9.955208 GCATGAATAACAGACAAATATCATGAA 57.045 29.630 14.58 0.00 34.83 2.57
2065 2109 9.346005 AGCATGAATAACAGACAAATATCATGA 57.654 29.630 14.58 0.00 34.83 3.07
2114 2158 7.916977 TGGTCTATGTATTCACACGTGTATTAC 59.083 37.037 22.90 20.91 37.54 1.89
2115 2159 7.916977 GTGGTCTATGTATTCACACGTGTATTA 59.083 37.037 22.90 9.93 37.54 0.98
2116 2160 6.755141 GTGGTCTATGTATTCACACGTGTATT 59.245 38.462 22.90 11.42 37.54 1.89
2117 2161 6.127563 TGTGGTCTATGTATTCACACGTGTAT 60.128 38.462 22.90 14.96 37.54 2.29
2118 2162 5.183522 TGTGGTCTATGTATTCACACGTGTA 59.816 40.000 22.90 7.35 37.54 2.90
2119 2163 4.021807 TGTGGTCTATGTATTCACACGTGT 60.022 41.667 17.22 17.22 37.54 4.49
2120 2164 4.490743 TGTGGTCTATGTATTCACACGTG 58.509 43.478 15.48 15.48 37.54 4.49
2121 2165 4.794278 TGTGGTCTATGTATTCACACGT 57.206 40.909 0.00 0.00 37.54 4.49
2122 2166 5.168569 AGTTGTGGTCTATGTATTCACACG 58.831 41.667 0.00 0.00 37.96 4.49
2123 2167 6.426937 ACAAGTTGTGGTCTATGTATTCACAC 59.573 38.462 7.96 0.00 37.96 3.82
2124 2168 6.530120 ACAAGTTGTGGTCTATGTATTCACA 58.470 36.000 7.96 0.00 39.52 3.58
2125 2169 6.092259 GGACAAGTTGTGGTCTATGTATTCAC 59.908 42.308 14.57 0.00 34.49 3.18
2126 2170 6.170506 GGACAAGTTGTGGTCTATGTATTCA 58.829 40.000 14.57 0.00 34.49 2.57
2127 2171 5.585047 GGGACAAGTTGTGGTCTATGTATTC 59.415 44.000 14.57 0.00 34.49 1.75
2128 2172 5.250774 AGGGACAAGTTGTGGTCTATGTATT 59.749 40.000 14.57 0.00 34.49 1.89
2129 2173 4.783227 AGGGACAAGTTGTGGTCTATGTAT 59.217 41.667 14.57 0.00 34.49 2.29
2130 2174 4.164981 AGGGACAAGTTGTGGTCTATGTA 58.835 43.478 14.57 0.00 34.49 2.29
2131 2175 2.979678 AGGGACAAGTTGTGGTCTATGT 59.020 45.455 14.57 0.00 34.49 2.29
2132 2176 3.703001 AGGGACAAGTTGTGGTCTATG 57.297 47.619 14.57 0.00 34.49 2.23
2133 2177 4.223032 CACTAGGGACAAGTTGTGGTCTAT 59.777 45.833 14.57 0.00 34.49 1.98
2134 2178 3.576982 CACTAGGGACAAGTTGTGGTCTA 59.423 47.826 14.57 10.56 34.49 2.59
2135 2179 2.368875 CACTAGGGACAAGTTGTGGTCT 59.631 50.000 14.57 9.98 34.49 3.85
2136 2180 2.367567 TCACTAGGGACAAGTTGTGGTC 59.632 50.000 14.57 0.00 0.00 4.02
2137 2181 2.368875 CTCACTAGGGACAAGTTGTGGT 59.631 50.000 14.57 0.00 0.00 4.16
2138 2182 2.872038 GCTCACTAGGGACAAGTTGTGG 60.872 54.545 14.57 1.07 0.00 4.17
2139 2183 2.417719 GCTCACTAGGGACAAGTTGTG 58.582 52.381 14.57 0.58 0.00 3.33
2140 2184 1.348036 GGCTCACTAGGGACAAGTTGT 59.652 52.381 8.61 8.61 0.00 3.32
2141 2185 1.625818 AGGCTCACTAGGGACAAGTTG 59.374 52.381 0.00 0.00 0.00 3.16
2142 2186 1.903183 GAGGCTCACTAGGGACAAGTT 59.097 52.381 10.25 0.00 0.00 2.66
2143 2187 1.077993 AGAGGCTCACTAGGGACAAGT 59.922 52.381 18.26 0.00 0.00 3.16
2144 2188 1.859302 AGAGGCTCACTAGGGACAAG 58.141 55.000 18.26 0.00 0.00 3.16
2145 2189 2.312140 ACTAGAGGCTCACTAGGGACAA 59.688 50.000 18.26 0.00 40.86 3.18
2146 2190 1.923850 ACTAGAGGCTCACTAGGGACA 59.076 52.381 18.26 0.00 40.86 4.02
2147 2191 2.691011 CAACTAGAGGCTCACTAGGGAC 59.309 54.545 18.26 0.00 40.86 4.46
2148 2192 2.581246 TCAACTAGAGGCTCACTAGGGA 59.419 50.000 18.26 9.66 40.86 4.20
2149 2193 2.955660 CTCAACTAGAGGCTCACTAGGG 59.044 54.545 18.26 7.64 40.86 3.53
2161 2205 4.941873 TGATCAACGAGCTACTCAACTAGA 59.058 41.667 0.00 0.00 0.00 2.43
2162 2206 5.236655 TGATCAACGAGCTACTCAACTAG 57.763 43.478 0.00 0.00 0.00 2.57
2163 2207 5.048294 TGTTGATCAACGAGCTACTCAACTA 60.048 40.000 28.55 7.59 43.94 2.24
2164 2208 4.238514 GTTGATCAACGAGCTACTCAACT 58.761 43.478 22.09 0.00 39.39 3.16
2165 2209 3.987868 TGTTGATCAACGAGCTACTCAAC 59.012 43.478 28.55 7.02 43.94 3.18
2166 2210 4.022329 TCTGTTGATCAACGAGCTACTCAA 60.022 41.667 28.55 10.18 43.94 3.02
2167 2211 3.506067 TCTGTTGATCAACGAGCTACTCA 59.494 43.478 28.55 10.88 43.94 3.41
2168 2212 4.098055 TCTGTTGATCAACGAGCTACTC 57.902 45.455 28.55 6.98 43.94 2.59
2169 2213 4.727507 ATCTGTTGATCAACGAGCTACT 57.272 40.909 28.55 13.33 43.94 2.57
2170 2214 5.583495 ACTATCTGTTGATCAACGAGCTAC 58.417 41.667 28.55 9.04 43.94 3.58
2171 2215 5.357032 TGACTATCTGTTGATCAACGAGCTA 59.643 40.000 28.55 20.52 43.94 3.32
2172 2216 4.158579 TGACTATCTGTTGATCAACGAGCT 59.841 41.667 28.55 20.51 43.94 4.09
2173 2217 4.424626 TGACTATCTGTTGATCAACGAGC 58.575 43.478 28.55 18.56 43.94 5.03
2174 2218 5.461407 CCATGACTATCTGTTGATCAACGAG 59.539 44.000 28.55 24.84 43.94 4.18
2175 2219 5.105351 ACCATGACTATCTGTTGATCAACGA 60.105 40.000 28.55 26.46 43.94 3.85
2176 2220 5.111989 ACCATGACTATCTGTTGATCAACG 58.888 41.667 28.55 23.04 43.94 4.10
2177 2221 6.992063 AACCATGACTATCTGTTGATCAAC 57.008 37.500 28.10 28.10 41.50 3.18
2178 2222 6.599244 GGAAACCATGACTATCTGTTGATCAA 59.401 38.462 3.38 3.38 34.32 2.57
2179 2223 6.070021 AGGAAACCATGACTATCTGTTGATCA 60.070 38.462 0.00 0.00 34.32 2.92
2180 2224 6.259608 CAGGAAACCATGACTATCTGTTGATC 59.740 42.308 0.00 0.00 34.32 2.92
2181 2225 6.070021 TCAGGAAACCATGACTATCTGTTGAT 60.070 38.462 0.00 0.00 36.74 2.57
2182 2226 5.248248 TCAGGAAACCATGACTATCTGTTGA 59.752 40.000 0.00 0.00 0.00 3.18
2183 2227 5.352569 GTCAGGAAACCATGACTATCTGTTG 59.647 44.000 0.00 0.00 42.06 3.33
2184 2228 5.491982 GTCAGGAAACCATGACTATCTGTT 58.508 41.667 0.00 0.00 42.06 3.16
2185 2229 5.091261 GTCAGGAAACCATGACTATCTGT 57.909 43.478 0.00 0.00 42.06 3.41
2192 2236 4.192317 GTCCATAGTCAGGAAACCATGAC 58.808 47.826 0.00 2.44 44.97 3.06
2193 2237 3.843619 TGTCCATAGTCAGGAAACCATGA 59.156 43.478 0.00 0.00 36.80 3.07
2194 2238 4.220693 TGTCCATAGTCAGGAAACCATG 57.779 45.455 0.00 0.00 36.80 3.66
2195 2239 5.195940 CAATGTCCATAGTCAGGAAACCAT 58.804 41.667 0.00 0.00 36.80 3.55
2196 2240 4.567537 CCAATGTCCATAGTCAGGAAACCA 60.568 45.833 0.00 0.00 36.80 3.67
2197 2241 3.947834 CCAATGTCCATAGTCAGGAAACC 59.052 47.826 0.00 0.00 36.80 3.27
2198 2242 4.843728 TCCAATGTCCATAGTCAGGAAAC 58.156 43.478 0.00 0.00 36.80 2.78
2199 2243 5.044919 ACATCCAATGTCCATAGTCAGGAAA 60.045 40.000 0.00 0.00 39.92 3.13
2200 2244 4.474651 ACATCCAATGTCCATAGTCAGGAA 59.525 41.667 0.00 0.00 39.92 3.36
2201 2245 4.040047 ACATCCAATGTCCATAGTCAGGA 58.960 43.478 0.00 0.00 39.92 3.86
2202 2246 4.428294 ACATCCAATGTCCATAGTCAGG 57.572 45.455 0.00 0.00 39.92 3.86
2214 2258 4.821260 TCCCGTTATCAATGACATCCAATG 59.179 41.667 0.00 0.00 0.00 2.82
2215 2259 5.047566 TCCCGTTATCAATGACATCCAAT 57.952 39.130 0.00 0.00 0.00 3.16
2216 2260 4.495690 TCCCGTTATCAATGACATCCAA 57.504 40.909 0.00 0.00 0.00 3.53
2217 2261 4.102367 TGATCCCGTTATCAATGACATCCA 59.898 41.667 0.00 0.00 32.97 3.41
2218 2262 4.452455 GTGATCCCGTTATCAATGACATCC 59.548 45.833 0.00 0.00 37.61 3.51
2219 2263 5.056480 TGTGATCCCGTTATCAATGACATC 58.944 41.667 0.00 0.00 37.61 3.06
2220 2264 5.034852 TGTGATCCCGTTATCAATGACAT 57.965 39.130 0.00 0.00 37.61 3.06
2221 2265 4.479786 TGTGATCCCGTTATCAATGACA 57.520 40.909 0.00 0.00 37.61 3.58
2222 2266 5.056480 TGATGTGATCCCGTTATCAATGAC 58.944 41.667 0.00 0.00 37.61 3.06
2223 2267 5.289083 TGATGTGATCCCGTTATCAATGA 57.711 39.130 0.00 0.00 37.61 2.57
2224 2268 6.564709 AATGATGTGATCCCGTTATCAATG 57.435 37.500 0.00 0.00 37.61 2.82
2225 2269 6.881065 CCTAATGATGTGATCCCGTTATCAAT 59.119 38.462 0.00 0.00 37.61 2.57
2226 2270 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
2227 2271 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
2228 2272 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
2229 2273 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
2230 2274 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
2231 2275 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
2232 2276 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
2233 2277 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
2234 2278 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
2242 2286 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
2243 2287 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
2244 2288 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
2245 2289 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
2246 2290 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
2247 2291 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
2248 2292 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
2249 2293 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
2250 2294 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
2251 2295 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
2252 2296 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
2253 2297 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
2254 2298 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
2255 2299 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
2256 2300 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
2257 2301 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
2258 2302 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
2259 2303 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
2260 2304 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
2261 2305 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
2262 2306 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
2263 2307 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
2264 2308 2.026262 TGCTTAGGATTGGGTCTTGTCC 60.026 50.000 0.00 0.00 0.00 4.02
2265 2309 3.350219 TGCTTAGGATTGGGTCTTGTC 57.650 47.619 0.00 0.00 0.00 3.18
2266 2310 4.687219 GCTATGCTTAGGATTGGGTCTTGT 60.687 45.833 8.57 0.00 0.00 3.16
2267 2311 3.817647 GCTATGCTTAGGATTGGGTCTTG 59.182 47.826 8.57 0.00 0.00 3.02
2268 2312 3.718956 AGCTATGCTTAGGATTGGGTCTT 59.281 43.478 8.57 0.00 33.89 3.01
2269 2313 3.321950 AGCTATGCTTAGGATTGGGTCT 58.678 45.455 8.57 0.00 33.89 3.85
2270 2314 3.071602 TGAGCTATGCTTAGGATTGGGTC 59.928 47.826 8.57 2.08 39.88 4.46
2271 2315 3.048600 TGAGCTATGCTTAGGATTGGGT 58.951 45.455 8.57 0.00 39.88 4.51
2272 2316 3.777106 TGAGCTATGCTTAGGATTGGG 57.223 47.619 8.57 0.00 39.88 4.12
2273 2317 5.371526 TCTTTGAGCTATGCTTAGGATTGG 58.628 41.667 8.57 0.00 39.88 3.16
2274 2318 6.128607 CGATCTTTGAGCTATGCTTAGGATTG 60.129 42.308 8.57 0.00 39.88 2.67
2275 2319 5.931146 CGATCTTTGAGCTATGCTTAGGATT 59.069 40.000 8.57 0.00 39.88 3.01
2276 2320 5.011533 ACGATCTTTGAGCTATGCTTAGGAT 59.988 40.000 8.57 0.00 39.88 3.24
2277 2321 4.342378 ACGATCTTTGAGCTATGCTTAGGA 59.658 41.667 8.57 0.00 39.88 2.94
2278 2322 4.447054 CACGATCTTTGAGCTATGCTTAGG 59.553 45.833 8.57 0.00 39.88 2.69
2279 2323 5.046529 ACACGATCTTTGAGCTATGCTTAG 58.953 41.667 2.28 2.28 39.88 2.18
2280 2324 5.011090 ACACGATCTTTGAGCTATGCTTA 57.989 39.130 0.00 0.00 39.88 3.09
2281 2325 3.866651 ACACGATCTTTGAGCTATGCTT 58.133 40.909 0.00 0.00 39.88 3.91
2282 2326 3.533606 ACACGATCTTTGAGCTATGCT 57.466 42.857 0.00 0.00 43.88 3.79
2283 2327 4.363999 ACTACACGATCTTTGAGCTATGC 58.636 43.478 0.00 0.00 0.00 3.14
2284 2328 5.172232 CGAACTACACGATCTTTGAGCTATG 59.828 44.000 0.00 0.00 0.00 2.23
2285 2329 5.274718 CGAACTACACGATCTTTGAGCTAT 58.725 41.667 0.00 0.00 0.00 2.97
2286 2330 4.659088 CGAACTACACGATCTTTGAGCTA 58.341 43.478 0.00 0.00 0.00 3.32
2287 2331 3.502920 CGAACTACACGATCTTTGAGCT 58.497 45.455 0.00 0.00 0.00 4.09
2288 2332 2.028165 GCGAACTACACGATCTTTGAGC 59.972 50.000 0.00 0.00 0.00 4.26
2289 2333 3.502920 AGCGAACTACACGATCTTTGAG 58.497 45.455 0.00 0.00 0.00 3.02
2290 2334 3.570926 AGCGAACTACACGATCTTTGA 57.429 42.857 0.00 0.00 0.00 2.69
2291 2335 4.259451 GCTAAGCGAACTACACGATCTTTG 60.259 45.833 0.00 0.00 0.00 2.77
2292 2336 3.858238 GCTAAGCGAACTACACGATCTTT 59.142 43.478 0.00 0.00 0.00 2.52
2293 2337 3.128938 AGCTAAGCGAACTACACGATCTT 59.871 43.478 0.00 0.00 0.00 2.40
2294 2338 2.683867 AGCTAAGCGAACTACACGATCT 59.316 45.455 0.00 0.00 0.00 2.75
2295 2339 3.067721 AGCTAAGCGAACTACACGATC 57.932 47.619 0.00 0.00 0.00 3.69
2296 2340 3.875727 TCTAGCTAAGCGAACTACACGAT 59.124 43.478 0.00 0.00 0.00 3.73
2297 2341 3.264947 TCTAGCTAAGCGAACTACACGA 58.735 45.455 0.00 0.00 0.00 4.35
2298 2342 3.609475 CTCTAGCTAAGCGAACTACACG 58.391 50.000 0.00 0.00 0.00 4.49
2299 2343 3.364946 GCTCTAGCTAAGCGAACTACAC 58.635 50.000 10.72 0.00 38.21 2.90
2300 2344 3.694535 GCTCTAGCTAAGCGAACTACA 57.305 47.619 10.72 0.00 38.21 2.74
2313 2357 5.048434 ACTTGACATTTGGAAAAGCTCTAGC 60.048 40.000 0.00 0.00 42.49 3.42
2314 2358 6.566197 ACTTGACATTTGGAAAAGCTCTAG 57.434 37.500 0.00 0.00 0.00 2.43
2315 2359 7.882791 TGATACTTGACATTTGGAAAAGCTCTA 59.117 33.333 0.00 0.00 0.00 2.43
2316 2360 6.716628 TGATACTTGACATTTGGAAAAGCTCT 59.283 34.615 0.00 0.00 0.00 4.09
2317 2361 6.913170 TGATACTTGACATTTGGAAAAGCTC 58.087 36.000 0.00 0.00 0.00 4.09
2318 2362 6.899393 TGATACTTGACATTTGGAAAAGCT 57.101 33.333 0.00 0.00 0.00 3.74
2319 2363 8.538409 AAATGATACTTGACATTTGGAAAAGC 57.462 30.769 0.00 0.00 42.54 3.51
2320 2364 9.143631 GGAAATGATACTTGACATTTGGAAAAG 57.856 33.333 0.00 0.00 43.62 2.27
2321 2365 8.869109 AGGAAATGATACTTGACATTTGGAAAA 58.131 29.630 0.00 0.00 43.62 2.29
2322 2366 8.421249 AGGAAATGATACTTGACATTTGGAAA 57.579 30.769 0.00 0.00 43.62 3.13
2323 2367 8.421249 AAGGAAATGATACTTGACATTTGGAA 57.579 30.769 0.00 0.00 43.62 3.53
2324 2368 9.177608 CTAAGGAAATGATACTTGACATTTGGA 57.822 33.333 0.00 0.00 43.62 3.53
2325 2369 9.177608 TCTAAGGAAATGATACTTGACATTTGG 57.822 33.333 0.00 0.00 43.62 3.28
2326 2370 9.994432 GTCTAAGGAAATGATACTTGACATTTG 57.006 33.333 0.00 0.00 43.62 2.32
2327 2371 9.178758 GGTCTAAGGAAATGATACTTGACATTT 57.821 33.333 0.00 0.00 45.37 2.32
2328 2372 8.328758 TGGTCTAAGGAAATGATACTTGACATT 58.671 33.333 0.00 0.00 38.18 2.71
2329 2373 7.861629 TGGTCTAAGGAAATGATACTTGACAT 58.138 34.615 0.00 0.00 30.76 3.06
2330 2374 7.252612 TGGTCTAAGGAAATGATACTTGACA 57.747 36.000 0.00 0.00 30.76 3.58
2331 2375 7.987458 TCATGGTCTAAGGAAATGATACTTGAC 59.013 37.037 0.00 0.00 0.00 3.18
2332 2376 8.089625 TCATGGTCTAAGGAAATGATACTTGA 57.910 34.615 0.00 0.00 0.00 3.02
2333 2377 8.206867 TCTCATGGTCTAAGGAAATGATACTTG 58.793 37.037 0.00 0.00 31.04 3.16
2334 2378 8.324191 TCTCATGGTCTAAGGAAATGATACTT 57.676 34.615 0.00 0.00 31.04 2.24
2335 2379 7.921041 TCTCATGGTCTAAGGAAATGATACT 57.079 36.000 0.00 0.00 31.04 2.12
2336 2380 8.997323 CAATCTCATGGTCTAAGGAAATGATAC 58.003 37.037 0.00 0.00 31.04 2.24
2337 2381 8.717717 ACAATCTCATGGTCTAAGGAAATGATA 58.282 33.333 0.00 0.00 31.04 2.15
2338 2382 7.501559 CACAATCTCATGGTCTAAGGAAATGAT 59.498 37.037 0.00 0.00 31.04 2.45
2339 2383 6.825213 CACAATCTCATGGTCTAAGGAAATGA 59.175 38.462 0.00 0.00 0.00 2.57
2340 2384 6.459298 GCACAATCTCATGGTCTAAGGAAATG 60.459 42.308 0.00 0.00 0.00 2.32
2341 2385 5.591877 GCACAATCTCATGGTCTAAGGAAAT 59.408 40.000 0.00 0.00 0.00 2.17
2342 2386 4.943705 GCACAATCTCATGGTCTAAGGAAA 59.056 41.667 0.00 0.00 0.00 3.13
2343 2387 4.019411 TGCACAATCTCATGGTCTAAGGAA 60.019 41.667 0.00 0.00 0.00 3.36
2344 2388 3.519107 TGCACAATCTCATGGTCTAAGGA 59.481 43.478 0.00 0.00 0.00 3.36
2345 2389 3.877559 TGCACAATCTCATGGTCTAAGG 58.122 45.455 0.00 0.00 0.00 2.69
2346 2390 4.940046 AGTTGCACAATCTCATGGTCTAAG 59.060 41.667 0.00 0.00 0.00 2.18
2347 2391 4.910195 AGTTGCACAATCTCATGGTCTAA 58.090 39.130 0.00 0.00 0.00 2.10
2348 2392 4.507710 GAGTTGCACAATCTCATGGTCTA 58.492 43.478 0.00 0.00 0.00 2.59
2349 2393 3.341823 GAGTTGCACAATCTCATGGTCT 58.658 45.455 0.00 0.00 0.00 3.85
2350 2394 2.421424 GGAGTTGCACAATCTCATGGTC 59.579 50.000 12.06 0.00 0.00 4.02
2351 2395 2.440409 GGAGTTGCACAATCTCATGGT 58.560 47.619 12.06 0.00 0.00 3.55
2352 2396 1.747355 GGGAGTTGCACAATCTCATGG 59.253 52.381 12.06 0.00 0.00 3.66
2353 2397 1.399440 CGGGAGTTGCACAATCTCATG 59.601 52.381 12.06 0.00 0.00 3.07
2354 2398 1.679944 CCGGGAGTTGCACAATCTCAT 60.680 52.381 0.00 0.00 0.00 2.90
2355 2399 0.321564 CCGGGAGTTGCACAATCTCA 60.322 55.000 0.00 0.00 0.00 3.27
2356 2400 0.036388 TCCGGGAGTTGCACAATCTC 60.036 55.000 0.00 0.00 0.00 2.75
2357 2401 0.620556 ATCCGGGAGTTGCACAATCT 59.379 50.000 0.00 0.00 0.00 2.40
2358 2402 1.940613 GTATCCGGGAGTTGCACAATC 59.059 52.381 0.00 0.00 0.00 2.67
2359 2403 1.408266 GGTATCCGGGAGTTGCACAAT 60.408 52.381 0.00 0.00 0.00 2.71
2360 2404 0.035820 GGTATCCGGGAGTTGCACAA 60.036 55.000 0.00 0.00 0.00 3.33
2361 2405 1.600107 GGTATCCGGGAGTTGCACA 59.400 57.895 0.00 0.00 0.00 4.57
2362 2406 1.520787 CGGTATCCGGGAGTTGCAC 60.521 63.158 0.00 0.00 44.15 4.57
2363 2407 2.897207 CGGTATCCGGGAGTTGCA 59.103 61.111 0.00 0.00 44.15 4.08
2373 2417 2.483188 CCAAAGCACTCCTACGGTATCC 60.483 54.545 0.00 0.00 0.00 2.59
2374 2418 2.483188 CCCAAAGCACTCCTACGGTATC 60.483 54.545 0.00 0.00 0.00 2.24
2375 2419 1.485066 CCCAAAGCACTCCTACGGTAT 59.515 52.381 0.00 0.00 0.00 2.73
2376 2420 0.899720 CCCAAAGCACTCCTACGGTA 59.100 55.000 0.00 0.00 0.00 4.02
2377 2421 1.125711 ACCCAAAGCACTCCTACGGT 61.126 55.000 0.00 0.00 0.00 4.83
2378 2422 0.899720 TACCCAAAGCACTCCTACGG 59.100 55.000 0.00 0.00 0.00 4.02
2379 2423 2.981859 ATACCCAAAGCACTCCTACG 57.018 50.000 0.00 0.00 0.00 3.51
2380 2424 3.453353 TGGTATACCCAAAGCACTCCTAC 59.547 47.826 19.42 0.00 41.50 3.18
2381 2425 3.726790 TGGTATACCCAAAGCACTCCTA 58.273 45.455 19.42 0.00 41.50 2.94
2382 2426 2.557869 TGGTATACCCAAAGCACTCCT 58.442 47.619 19.42 0.00 41.50 3.69
2392 2436 3.766068 TTGTGACGTTTGGTATACCCA 57.234 42.857 19.42 5.40 43.27 4.51
2393 2437 4.004982 ACATTGTGACGTTTGGTATACCC 58.995 43.478 19.42 3.04 34.29 3.69
2394 2438 6.369615 AGTTACATTGTGACGTTTGGTATACC 59.630 38.462 15.50 15.50 0.00 2.73
2395 2439 7.231607 CAGTTACATTGTGACGTTTGGTATAC 58.768 38.462 6.11 0.00 0.00 1.47
2396 2440 6.369340 CCAGTTACATTGTGACGTTTGGTATA 59.631 38.462 6.11 0.00 0.00 1.47
2397 2441 5.180492 CCAGTTACATTGTGACGTTTGGTAT 59.820 40.000 6.11 0.00 0.00 2.73
2398 2442 4.512198 CCAGTTACATTGTGACGTTTGGTA 59.488 41.667 6.11 0.00 0.00 3.25
2399 2443 3.314080 CCAGTTACATTGTGACGTTTGGT 59.686 43.478 6.11 0.00 0.00 3.67
2400 2444 3.304391 CCCAGTTACATTGTGACGTTTGG 60.304 47.826 10.01 10.01 0.00 3.28
2401 2445 3.314080 ACCCAGTTACATTGTGACGTTTG 59.686 43.478 6.11 0.39 0.00 2.93
2402 2446 3.314080 CACCCAGTTACATTGTGACGTTT 59.686 43.478 6.11 0.00 0.00 3.60
2403 2447 2.875933 CACCCAGTTACATTGTGACGTT 59.124 45.455 6.11 0.00 0.00 3.99
2404 2448 2.103432 TCACCCAGTTACATTGTGACGT 59.897 45.455 6.11 0.00 31.45 4.34
2405 2449 2.478894 GTCACCCAGTTACATTGTGACG 59.521 50.000 12.75 2.34 44.18 4.35
2407 2451 5.755409 ATAGTCACCCAGTTACATTGTGA 57.245 39.130 0.00 0.00 33.83 3.58
2408 2452 7.065803 CCTTTATAGTCACCCAGTTACATTGTG 59.934 40.741 0.00 0.00 0.00 3.33
2409 2453 7.110155 CCTTTATAGTCACCCAGTTACATTGT 58.890 38.462 0.00 0.00 0.00 2.71
2410 2454 7.065803 CACCTTTATAGTCACCCAGTTACATTG 59.934 40.741 0.00 0.00 0.00 2.82
2411 2455 7.110155 CACCTTTATAGTCACCCAGTTACATT 58.890 38.462 0.00 0.00 0.00 2.71
2412 2456 6.650120 CACCTTTATAGTCACCCAGTTACAT 58.350 40.000 0.00 0.00 0.00 2.29
2413 2457 5.570034 GCACCTTTATAGTCACCCAGTTACA 60.570 44.000 0.00 0.00 0.00 2.41
2414 2458 4.874396 GCACCTTTATAGTCACCCAGTTAC 59.126 45.833 0.00 0.00 0.00 2.50
2415 2459 4.532916 TGCACCTTTATAGTCACCCAGTTA 59.467 41.667 0.00 0.00 0.00 2.24
2416 2460 3.329520 TGCACCTTTATAGTCACCCAGTT 59.670 43.478 0.00 0.00 0.00 3.16
2417 2461 2.910319 TGCACCTTTATAGTCACCCAGT 59.090 45.455 0.00 0.00 0.00 4.00
2418 2462 3.055094 AGTGCACCTTTATAGTCACCCAG 60.055 47.826 14.63 0.00 0.00 4.45
2419 2463 2.910319 AGTGCACCTTTATAGTCACCCA 59.090 45.455 14.63 0.00 0.00 4.51
2420 2464 3.629142 AGTGCACCTTTATAGTCACCC 57.371 47.619 14.63 0.00 0.00 4.61
2421 2465 4.110482 CGTAGTGCACCTTTATAGTCACC 58.890 47.826 14.63 0.00 0.00 4.02
2422 2466 4.110482 CCGTAGTGCACCTTTATAGTCAC 58.890 47.826 14.63 0.00 0.00 3.67
2423 2467 3.131577 CCCGTAGTGCACCTTTATAGTCA 59.868 47.826 14.63 0.00 0.00 3.41
2424 2468 3.131755 ACCCGTAGTGCACCTTTATAGTC 59.868 47.826 14.63 0.00 0.00 2.59
2425 2469 3.102204 ACCCGTAGTGCACCTTTATAGT 58.898 45.455 14.63 0.00 0.00 2.12
2426 2470 3.814005 ACCCGTAGTGCACCTTTATAG 57.186 47.619 14.63 0.00 0.00 1.31
2427 2471 5.142639 AGATACCCGTAGTGCACCTTTATA 58.857 41.667 14.63 0.00 0.00 0.98
2428 2472 3.965347 AGATACCCGTAGTGCACCTTTAT 59.035 43.478 14.63 2.08 0.00 1.40
2429 2473 3.368248 AGATACCCGTAGTGCACCTTTA 58.632 45.455 14.63 0.00 0.00 1.85
2430 2474 2.167900 GAGATACCCGTAGTGCACCTTT 59.832 50.000 14.63 0.00 0.00 3.11
2431 2475 1.755380 GAGATACCCGTAGTGCACCTT 59.245 52.381 14.63 0.00 0.00 3.50
2432 2476 1.400737 GAGATACCCGTAGTGCACCT 58.599 55.000 14.63 3.48 0.00 4.00
2433 2477 0.388294 GGAGATACCCGTAGTGCACC 59.612 60.000 14.63 0.00 0.00 5.01
2434 2478 0.030369 CGGAGATACCCGTAGTGCAC 59.970 60.000 9.40 9.40 44.23 4.57
2435 2479 2.411535 CGGAGATACCCGTAGTGCA 58.588 57.895 0.00 0.00 44.23 4.57
2443 2487 2.496470 ACAGACACTTTCGGAGATACCC 59.504 50.000 0.00 0.00 35.04 3.69
2444 2488 3.870633 ACAGACACTTTCGGAGATACC 57.129 47.619 0.00 0.00 35.04 2.73
2445 2489 3.927142 CCAACAGACACTTTCGGAGATAC 59.073 47.826 0.00 0.00 35.04 2.24
2446 2490 3.056107 CCCAACAGACACTTTCGGAGATA 60.056 47.826 0.00 0.00 35.04 1.98
2447 2491 2.289694 CCCAACAGACACTTTCGGAGAT 60.290 50.000 0.00 0.00 35.04 2.75
2448 2492 1.070134 CCCAACAGACACTTTCGGAGA 59.930 52.381 0.00 0.00 0.00 3.71
2449 2493 1.202651 ACCCAACAGACACTTTCGGAG 60.203 52.381 0.00 0.00 0.00 4.63
2450 2494 0.834612 ACCCAACAGACACTTTCGGA 59.165 50.000 0.00 0.00 0.00 4.55
2451 2495 1.333619 CAACCCAACAGACACTTTCGG 59.666 52.381 0.00 0.00 0.00 4.30
2452 2496 1.333619 CCAACCCAACAGACACTTTCG 59.666 52.381 0.00 0.00 0.00 3.46
2453 2497 1.067060 GCCAACCCAACAGACACTTTC 59.933 52.381 0.00 0.00 0.00 2.62
2454 2498 1.111277 GCCAACCCAACAGACACTTT 58.889 50.000 0.00 0.00 0.00 2.66
2455 2499 0.033601 TGCCAACCCAACAGACACTT 60.034 50.000 0.00 0.00 0.00 3.16
2456 2500 0.751643 GTGCCAACCCAACAGACACT 60.752 55.000 0.00 0.00 0.00 3.55
2457 2501 1.733526 GTGCCAACCCAACAGACAC 59.266 57.895 0.00 0.00 0.00 3.67
2458 2502 1.821759 CGTGCCAACCCAACAGACA 60.822 57.895 0.00 0.00 0.00 3.41
2459 2503 1.098712 TTCGTGCCAACCCAACAGAC 61.099 55.000 0.00 0.00 0.00 3.51
2460 2504 0.179004 ATTCGTGCCAACCCAACAGA 60.179 50.000 0.00 0.00 0.00 3.41
2461 2505 0.240945 GATTCGTGCCAACCCAACAG 59.759 55.000 0.00 0.00 0.00 3.16
2462 2506 1.511318 CGATTCGTGCCAACCCAACA 61.511 55.000 0.00 0.00 0.00 3.33
2463 2507 1.209127 CGATTCGTGCCAACCCAAC 59.791 57.895 0.00 0.00 0.00 3.77
2464 2508 0.953471 CTCGATTCGTGCCAACCCAA 60.953 55.000 5.89 0.00 0.00 4.12
2465 2509 1.375396 CTCGATTCGTGCCAACCCA 60.375 57.895 5.89 0.00 0.00 4.51
2466 2510 1.079405 TCTCGATTCGTGCCAACCC 60.079 57.895 5.89 0.00 0.00 4.11
2467 2511 0.389948 AGTCTCGATTCGTGCCAACC 60.390 55.000 5.89 0.00 0.00 3.77
2468 2512 0.716108 CAGTCTCGATTCGTGCCAAC 59.284 55.000 5.89 0.00 0.00 3.77
2469 2513 3.122150 CAGTCTCGATTCGTGCCAA 57.878 52.632 5.89 0.00 0.00 4.52
2470 2514 4.889427 CAGTCTCGATTCGTGCCA 57.111 55.556 5.89 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.