AutoCloner

Multiple sequence alignment - TraesCS1B01G079700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G079700	chr1B	100.000	2494	0	0	1	2494	62245087	62247580	0.000000e+00	4606.0
1	TraesCS1B01G079700	chr1B	83.117	616	54	17	920	1502	62000402	62001000	1.320000e-142	516.0
2	TraesCS1B01G079700	chr1B	79.372	732	89	38	793	1498	62056945	62057640	2.260000e-125	459.0
3	TraesCS1B01G079700	chr1B	79.167	288	40	10	992	1273	62022727	62023000	5.480000e-42	182.0
4	TraesCS1B01G079700	chr1A	87.539	1589	114	39	689	2215	41915393	41916959	0.000000e+00	1760.0
5	TraesCS1B01G079700	chr1A	81.803	610	57	24	920	1496	41900901	41901489	1.750000e-126	462.0
6	TraesCS1B01G079700	chr1A	92.808	292	20	1	397	688	21482506	21482796	2.970000e-114	422.0
7	TraesCS1B01G079700	chr1A	78.333	240	32	7	1003	1236	41910193	41910418	1.200000e-28	137.0
8	TraesCS1B01G079700	chr1A	83.721	129	13	2	795	916	41899089	41899216	5.640000e-22	115.0
9	TraesCS1B01G079700	chr7B	97.991	697	14	0	1	697	616817042	616816346	0.000000e+00	1210.0
10	TraesCS1B01G079700	chr7B	98.226	620	11	0	69	688	686970419	686971038	0.000000e+00	1085.0
11	TraesCS1B01G079700	chr7B	97.403	77	2	0	1	77	686969247	686969323	5.600000e-27	132.0
12	TraesCS1B01G079700	chr2B	98.116	690	13	0	1	690	770607699	770608388	0.000000e+00	1203.0
13	TraesCS1B01G079700	chr2B	94.257	296	15	2	397	692	545232648	545232941	3.780000e-123	451.0
14	TraesCS1B01G079700	chr2B	91.781	292	22	2	397	688	666079621	666079910	2.990000e-109	405.0
15	TraesCS1B01G079700	chr2B	83.827	371	32	13	3	373	706567631	706567973	6.650000e-86	327.0
16	TraesCS1B01G079700	chr2B	82.749	371	32	15	3	373	706699008	706699346	4.030000e-78	302.0
17	TraesCS1B01G079700	chr5B	97.965	688	14	0	1	688	250134131	250134818	0.000000e+00	1194.0
18	TraesCS1B01G079700	chr1D	88.544	838	64	16	689	1502	41887255	41888084	0.000000e+00	987.0
19	TraesCS1B01G079700	chr1D	86.000	750	64	15	1775	2494	41891724	41892462	0.000000e+00	765.0
20	TraesCS1B01G079700	chr1D	82.982	570	54	20	730	1273	41860867	41861419	2.240000e-130	475.0
21	TraesCS1B01G079700	chr1D	87.019	208	19	3	1293	1496	41861483	41861686	6.940000e-56	228.0
22	TraesCS1B01G079700	chr1D	93.333	60	4	0	1001	1060	41856383	41856442	3.420000e-14	89.8
23	TraesCS1B01G079700	chr1D	97.143	35	1	0	920	954	41856316	41856350	2.680000e-05	60.2
24	TraesCS1B01G079700	chr4B	99.728	367	1	0	1	367	649654475	649654109	0.000000e+00	673.0
25	TraesCS1B01G079700	chr2D	88.949	371	26	6	3	373	585519693	585520048	6.330000e-121	444.0
26	TraesCS1B01G079700	chr2D	83.646	373	35	7	3	373	585636265	585636613	6.650000e-86	327.0
27	TraesCS1B01G079700	chr5A	93.515	293	18	1	397	689	33001094	33000803	3.810000e-118	435.0
28	TraesCS1B01G079700	chr5A	84.173	139	15	5	2119	2252	562506174	562506038	7.240000e-26	128.0
29	TraesCS1B01G079700	chrUn	92.784	291	20	1	397	687	213609492	213609203	1.070000e-113	420.0
30	TraesCS1B01G079700	chr2A	86.857	350	31	4	20	366	719565379	719565716	6.510000e-101	377.0
31	TraesCS1B01G079700	chr2A	83.465	381	39	11	3	373	719685833	719686199	1.430000e-87	333.0
32	TraesCS1B01G079700	chr2A	90.260	154	9	1	3	150	719574203	719574356	1.960000e-46	196.0
33	TraesCS1B01G079700	chr3B	80.576	139	19	6	2250	2385	729913745	729913612	1.580000e-17	100.0
34	TraesCS1B01G079700	chr4D	82.500	80	8	5	2170	2244	307150431	307150509	5.760000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G079700	chr1B	62245087	62247580	2493	False	4606.0	4606	100.0000	1	2494	1	chr1B.!!$F4	2493
1	TraesCS1B01G079700	chr1B	62000402	62001000	598	False	516.0	516	83.1170	920	1502	1	chr1B.!!$F1	582
2	TraesCS1B01G079700	chr1B	62056945	62057640	695	False	459.0	459	79.3720	793	1498	1	chr1B.!!$F3	705
3	TraesCS1B01G079700	chr1A	41915393	41916959	1566	False	1760.0	1760	87.5390	689	2215	1	chr1A.!!$F3	1526
4	TraesCS1B01G079700	chr1A	41899089	41901489	2400	False	288.5	462	82.7620	795	1496	2	chr1A.!!$F4	701
5	TraesCS1B01G079700	chr7B	616816346	616817042	696	True	1210.0	1210	97.9910	1	697	1	chr7B.!!$R1	696
6	TraesCS1B01G079700	chr7B	686969247	686971038	1791	False	608.5	1085	97.8145	1	688	2	chr7B.!!$F1	687
7	TraesCS1B01G079700	chr2B	770607699	770608388	689	False	1203.0	1203	98.1160	1	690	1	chr2B.!!$F5	689
8	TraesCS1B01G079700	chr5B	250134131	250134818	687	False	1194.0	1194	97.9650	1	688	1	chr5B.!!$F1	687
9	TraesCS1B01G079700	chr1D	41887255	41892462	5207	False	876.0	987	87.2720	689	2494	2	chr1D.!!$F3	1805
10	TraesCS1B01G079700	chr1D	41860867	41861686	819	False	351.5	475	85.0005	730	1496	2	chr1D.!!$F2	766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
988	3807	0.039527	ACGCCGCCAAATGAAAAGAC	60.04	50.0	0.0	0.0	0.0	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2205	8509	0.041135	TTACGGGCGCGAAACTTTTG	60.041	50.0	30.98	0.0	0.0	2.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
555	1660	4.170723	GCTAAAGCGCGAGACACT	57.829	55.556	12.10	0.00	0.00	3.55
622	1727	3.619038	GCTAAAAGGGTCAGATCGTGAAG	59.381	47.826	0.00	0.00	36.74	3.02
632	1737	6.405508	GGGTCAGATCGTGAAGTACTTTCATA	60.406	42.308	10.02	3.30	46.85	2.15
736	1841	3.400255	CATATGATGTACTGCTGCTGCT	58.600	45.455	17.00	0.00	40.48	4.24
765	1873	1.598882	TTTGTAACAGATGCACGGCA	58.401	45.000	0.00	1.01	44.86	5.69
821	1934	2.331265	GCTTTTGCGTTCCTGACCT	58.669	52.632	0.00	0.00	34.86	3.85
917	2048	8.228206	CCCTGCTCTTACCTCTCCATATATATA	58.772	40.741	0.00	0.00	0.00	0.86
918	2049	9.821240	CCTGCTCTTACCTCTCCATATATATAT	57.179	37.037	0.00	0.00	0.00	0.86
964	3783	1.003646	TCACTCCTCAGTCCCTAGCT	58.996	55.000	0.00	0.00	0.00	3.32
965	3784	2.173782	CTCACTCCTCAGTCCCTAGCTA	59.826	54.545	0.00	0.00	0.00	3.32
966	3785	2.092321	TCACTCCTCAGTCCCTAGCTAC	60.092	54.545	0.00	0.00	0.00	3.58
967	3786	1.134037	ACTCCTCAGTCCCTAGCTACG	60.134	57.143	0.00	0.00	0.00	3.51
970	3789	2.158842	TCCTCAGTCCCTAGCTACGTAC	60.159	54.545	0.00	0.00	0.00	3.67
973	3792	0.817229	AGTCCCTAGCTACGTACGCC	60.817	60.000	16.72	4.00	0.00	5.68
983	3802	0.389556	TACGTACGCCGCCAAATGAA	60.390	50.000	16.72	0.00	41.42	2.57
988	3807	0.039527	ACGCCGCCAAATGAAAAGAC	60.040	50.000	0.00	0.00	0.00	3.01
1167	3997	2.298729	GGGGGAGAAGATCAAGATCTCG	59.701	54.545	12.62	0.00	46.75	4.04
1297	4187	5.577164	GTGATTTCGTTCTAGCTAAGCTTGA	59.423	40.000	9.86	0.00	40.44	3.02
1361	4254	3.142393	CCTGGAGGGCATACGAGG	58.858	66.667	0.00	0.00	0.00	4.63
1463	4356	1.808945	CAATGTGAAGTGCTGACCCTC	59.191	52.381	0.00	0.00	0.00	4.30
1465	4358	0.106708	TGTGAAGTGCTGACCCTCAC	59.893	55.000	0.00	0.00	36.57	3.51
1537	4472	2.289945	GGAGAAGGAGCTGCTCTTTTCA	60.290	50.000	30.19	0.00	36.44	2.69
1561	4497	4.862371	TCCAAGGGAAAATATTTAGGCGT	58.138	39.130	0.01	0.00	0.00	5.68
1593	4531	5.659440	TGTGTTGTAGTATCTGCAGATCA	57.341	39.130	31.92	20.48	36.05	2.92
1594	4532	6.036577	TGTGTTGTAGTATCTGCAGATCAA	57.963	37.500	31.92	24.62	36.05	2.57
1595	4533	6.463360	TGTGTTGTAGTATCTGCAGATCAAA	58.537	36.000	31.92	14.46	36.05	2.69
1596	4534	6.368791	TGTGTTGTAGTATCTGCAGATCAAAC	59.631	38.462	31.92	23.58	36.05	2.93
1608	4546	5.828747	TGCAGATCAAACGGTAGTAGTATC	58.171	41.667	0.00	0.00	0.00	2.24
1617	4555	7.435488	TCAAACGGTAGTAGTATCGTAGTACTC	59.565	40.741	15.97	0.00	45.45	2.59
1635	4573	0.835971	TCTGCAGGGTGCTGGAGTAA	60.836	55.000	15.13	0.00	45.31	2.24
1654	4592	5.777802	AGTAAGCCGATCTTCATGTATCTG	58.222	41.667	0.00	0.00	36.25	2.90
1674	4615	5.410924	TCTGTATGCTATATCGTGGATTGC	58.589	41.667	0.00	0.00	0.00	3.56
1679	4622	2.155732	GCTATATCGTGGATTGCGTGTG	59.844	50.000	0.00	0.00	0.00	3.82
1779	4723	8.804688	TTTTATGAATTTTGTACCCAAACTCG	57.195	30.769	0.00	0.00	40.19	4.18
1791	8067	1.070134	CCAAACTCGGTCAAGTGGAGA	59.930	52.381	0.00	0.00	0.00	3.71
1867	8144	5.010719	AGTGTCAAGAAGAACGAAGGATACA	59.989	40.000	0.00	0.00	41.41	2.29
1882	8159	5.028549	AGGATACAAGCGAGAATGTCATT	57.971	39.130	0.00	0.00	41.41	2.57
1893	8171	5.237344	GCGAGAATGTCATTAGCCAGTATTT	59.763	40.000	0.00	0.00	0.00	1.40
1909	8187	5.450688	CCAGTATTTAGAGTCGAGGGTGAAG	60.451	48.000	0.00	0.00	0.00	3.02
1911	8189	3.936372	TTTAGAGTCGAGGGTGAAGTG	57.064	47.619	0.00	0.00	0.00	3.16
1912	8190	2.873094	TAGAGTCGAGGGTGAAGTGA	57.127	50.000	0.00	0.00	0.00	3.41
1913	8191	1.249407	AGAGTCGAGGGTGAAGTGAC	58.751	55.000	0.00	0.00	0.00	3.67
1914	8192	0.959553	GAGTCGAGGGTGAAGTGACA	59.040	55.000	0.00	0.00	32.08	3.58
1915	8193	0.962489	AGTCGAGGGTGAAGTGACAG	59.038	55.000	0.00	0.00	32.08	3.51
1916	8194	0.959553	GTCGAGGGTGAAGTGACAGA	59.040	55.000	0.00	0.00	0.00	3.41
1917	8195	1.340248	GTCGAGGGTGAAGTGACAGAA	59.660	52.381	0.00	0.00	0.00	3.02
1918	8196	2.028930	GTCGAGGGTGAAGTGACAGAAT	60.029	50.000	0.00	0.00	0.00	2.40
1919	8197	2.029020	TCGAGGGTGAAGTGACAGAATG	60.029	50.000	0.00	0.00	46.00	2.67
1933	8211	8.585471	AGTGACAGAATGATGACCATTTTTAT	57.415	30.769	0.00	0.00	45.00	1.40
2000	8295	4.312487	TGGGTTAGTATAGGCATTTCCCT	58.688	43.478	0.00	0.00	39.05	4.20
2002	8297	5.912354	TGGGTTAGTATAGGCATTTCCCTTA	59.088	40.000	0.00	0.00	36.41	2.69
2036	8331	4.883006	ACGTGAAAGGGTTTTAGCTGTAAA	59.117	37.500	0.00	0.00	0.00	2.01
2045	8340	3.985019	TTTAGCTGTAAACCCATCGGA	57.015	42.857	0.00	0.00	0.00	4.55
2063	8358	6.404708	CATCGGATTGATAGATGATCACCTT	58.595	40.000	0.00	0.00	44.53	3.50
2113	8408	0.684805	CCGTTGAGTAGCCCCTCTCT	60.685	60.000	2.33	0.00	32.50	3.10
2117	8412	3.219281	GTTGAGTAGCCCCTCTCTCTAG	58.781	54.545	2.33	0.00	32.50	2.43
2205	8509	7.769272	TTTGAAATGTCACAAAATTCTGACC	57.231	32.000	7.89	0.00	36.70	4.02
2234	8544	3.247442	TCGCGCCCGTAAATATTCTATG	58.753	45.455	0.00	0.00	35.54	2.23
2247	8557	9.922305	GTAAATATTCTATGTGCTCACAAAGTC	57.078	33.333	6.81	0.00	45.41	3.01
2254	8564	2.095213	TGTGCTCACAAAGTCGTTTCAC	59.905	45.455	0.00	0.00	38.56	3.18
2257	8567	3.376859	TGCTCACAAAGTCGTTTCACAAT	59.623	39.130	0.00	0.00	0.00	2.71
2259	8569	5.065346	TGCTCACAAAGTCGTTTCACAATAA	59.935	36.000	0.00	0.00	0.00	1.40
2317	8628	3.126343	GTCGGTATTCTGCGAAATTTGGT	59.874	43.478	0.00	0.00	0.00	3.67
2319	8630	3.119990	CGGTATTCTGCGAAATTTGGTGT	60.120	43.478	0.00	0.00	0.00	4.16
2321	8632	5.220777	CGGTATTCTGCGAAATTTGGTGTAT	60.221	40.000	0.00	0.00	0.00	2.29
2323	8634	7.352739	GGTATTCTGCGAAATTTGGTGTATAG	58.647	38.462	0.00	0.00	0.00	1.31
2325	8636	7.807977	ATTCTGCGAAATTTGGTGTATAGAT	57.192	32.000	0.00	0.00	0.00	1.98
2330	8641	9.639601	CTGCGAAATTTGGTGTATAGATATAGA	57.360	33.333	0.00	0.00	0.00	1.98
2347	8658	4.830826	ATAGAATGTCGAGATGTACGCA	57.169	40.909	0.00	0.00	0.00	5.24
2348	8659	2.798680	AGAATGTCGAGATGTACGCAC	58.201	47.619	0.00	0.00	0.00	5.34
2349	8660	2.423892	AGAATGTCGAGATGTACGCACT	59.576	45.455	0.00	0.00	0.00	4.40
2350	8661	3.626217	AGAATGTCGAGATGTACGCACTA	59.374	43.478	0.00	0.00	0.00	2.74
2358	8669	6.461698	GTCGAGATGTACGCACTAAATTTTTG	59.538	38.462	0.00	0.00	0.00	2.44
2430	8743	1.259840	GCCCCATGTGCCAAAGTGAT	61.260	55.000	0.00	0.00	0.00	3.06
2435	8748	3.328505	CCATGTGCCAAAGTGATTTTCC	58.671	45.455	0.00	0.00	0.00	3.13
2436	8749	3.244146	CCATGTGCCAAAGTGATTTTCCA	60.244	43.478	0.00	0.00	0.00	3.53
2458	8771	1.610554	TTCGGTAGCCCCTCCTTTCG	61.611	60.000	0.00	0.00	0.00	3.46
2461	8774	1.449778	GTAGCCCCTCCTTTCGCAC	60.450	63.158	0.00	0.00	0.00	5.34
2462	8775	1.612442	TAGCCCCTCCTTTCGCACT	60.612	57.895	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
555	1660	4.340097	TCTTCTCCATATAGAAACGCCGAA	59.660	41.667	0.00	0.00	35.14	4.30
632	1737	6.757897	TCTTTGCCATAAAATGAACTCGAT	57.242	33.333	0.00	0.00	0.00	3.59
736	1841	5.647225	TGCATCTGTTACAAATACATGAGCA	59.353	36.000	0.00	0.00	0.00	4.26
917	2048	1.421268	TGCACAGAAGAACCCACTGAT	59.579	47.619	0.00	0.00	35.85	2.90
918	2049	0.836606	TGCACAGAAGAACCCACTGA	59.163	50.000	0.00	0.00	35.85	3.41
964	3783	0.389556	TTCATTTGGCGGCGTACGTA	60.390	50.000	17.90	0.00	46.52	3.57
965	3784	1.229315	TTTCATTTGGCGGCGTACGT	61.229	50.000	17.90	0.00	46.52	3.57
967	3786	1.198178	TCTTTTCATTTGGCGGCGTAC	59.802	47.619	9.37	2.30	0.00	3.67
970	3789	1.065031	CGTCTTTTCATTTGGCGGCG	61.065	55.000	0.51	0.51	0.00	6.46
973	3792	2.031157	ACTTCCGTCTTTTCATTTGGCG	60.031	45.455	0.00	0.00	0.00	5.69
988	3807	0.249073	CGAGCCATGGTAGACTTCCG	60.249	60.000	14.67	0.00	0.00	4.30
1069	3891	0.041238	TTCCCTCGGGACTGATGAGT	59.959	55.000	3.65	0.00	45.11	3.41
1167	3997	1.999051	CTCATCAACGTAGTGCGCC	59.001	57.895	4.18	0.00	45.00	6.53
1221	4054	3.582148	ACGTACGGCTCGTCATCA	58.418	55.556	21.06	0.00	41.54	3.07
1297	4187	0.539051	CCGAGGCTGGAGTTCAATCT	59.461	55.000	0.00	0.00	0.00	2.40
1353	4246	4.201679	TCCCGCGCACCTCGTATG	62.202	66.667	8.75	0.00	41.07	2.39
1361	4254	4.194720	ATCGAGACTCCCGCGCAC	62.195	66.667	8.75	0.00	37.99	5.34
1463	4356	0.744281	AAACAACGAGGCAAAGGGTG	59.256	50.000	0.00	0.00	0.00	4.61
1465	4358	1.266989	GAGAAACAACGAGGCAAAGGG	59.733	52.381	0.00	0.00	0.00	3.95
1537	4472	5.897250	ACGCCTAAATATTTTCCCTTGGAAT	59.103	36.000	5.91	0.00	41.71	3.01
1576	4512	4.159693	ACCGTTTGATCTGCAGATACTACA	59.840	41.667	28.78	19.03	34.37	2.74
1593	4531	7.436673	CAGAGTACTACGATACTACTACCGTTT	59.563	40.741	0.00	0.00	35.48	3.60
1594	4532	6.920758	CAGAGTACTACGATACTACTACCGTT	59.079	42.308	0.00	0.00	35.48	4.44
1595	4533	6.442952	CAGAGTACTACGATACTACTACCGT	58.557	44.000	0.00	0.00	35.48	4.83
1596	4534	5.344665	GCAGAGTACTACGATACTACTACCG	59.655	48.000	0.00	0.00	35.48	4.02
1608	4546	0.179134	GCACCCTGCAGAGTACTACG	60.179	60.000	17.39	0.00	44.26	3.51
1635	4573	5.718146	CATACAGATACATGAAGATCGGCT	58.282	41.667	0.00	0.00	0.00	5.52
1654	4592	4.031765	CACGCAATCCACGATATAGCATAC	59.968	45.833	0.00	0.00	0.00	2.39
1674	4615	5.289917	TCTTAATTATGTTGTGCCACACG	57.710	39.130	0.00	0.00	37.14	4.49
1679	4622	4.981806	TGCCTCTTAATTATGTTGTGCC	57.018	40.909	0.00	0.00	0.00	5.01
1682	4625	7.814107	CACACAATTGCCTCTTAATTATGTTGT	59.186	33.333	5.05	0.00	34.08	3.32
1775	4719	3.771577	ATTTTCTCCACTTGACCGAGT	57.228	42.857	0.00	0.00	0.00	4.18
1776	4720	6.743575	ATTAATTTTCTCCACTTGACCGAG	57.256	37.500	0.00	0.00	0.00	4.63
1779	4723	8.887036	ACAAAATTAATTTTCTCCACTTGACC	57.113	30.769	20.71	0.00	37.86	4.02
1867	8144	3.201290	CTGGCTAATGACATTCTCGCTT	58.799	45.455	3.36	0.00	0.00	4.68
1882	8159	4.142790	CCCTCGACTCTAAATACTGGCTA	58.857	47.826	0.00	0.00	0.00	3.93
1893	8171	2.224695	TGTCACTTCACCCTCGACTCTA	60.225	50.000	0.00	0.00	0.00	2.43
1909	8187	7.703621	CCATAAAAATGGTCATCATTCTGTCAC	59.296	37.037	0.00	0.00	44.68	3.67
1945	8223	0.978146	GCTCTCCTCACCCCTAGCAA	60.978	60.000	0.00	0.00	0.00	3.91
2036	8331	4.779489	TGATCATCTATCAATCCGATGGGT	59.221	41.667	0.00	0.00	41.75	4.51
2045	8340	5.314718	TGGCAAGGTGATCATCTATCAAT	57.685	39.130	9.40	0.00	46.17	2.57
2073	8368	3.508840	GCCCTACCATGTGCGCAC	61.509	66.667	33.11	33.11	0.00	5.34
2076	8371	2.514592	CCTGCCCTACCATGTGCG	60.515	66.667	0.00	0.00	0.00	5.34
2113	8408	2.180276	GCCAAACTCACCTCTCCTAGA	58.820	52.381	0.00	0.00	0.00	2.43
2117	8412	2.934083	GTGCCAAACTCACCTCTCC	58.066	57.895	0.00	0.00	0.00	3.71
2123	8418	0.951040	CTCTCGGGTGCCAAACTCAC	60.951	60.000	0.00	0.00	0.00	3.51
2124	8419	1.371183	CTCTCGGGTGCCAAACTCA	59.629	57.895	0.00	0.00	0.00	3.41
2205	8509	0.041135	TTACGGGCGCGAAACTTTTG	60.041	50.000	30.98	0.00	0.00	2.44
2234	8544	2.095213	TGTGAAACGACTTTGTGAGCAC	59.905	45.455	0.00	0.00	42.39	4.40
2321	8632	7.548075	TGCGTACATCTCGACATTCTATATCTA	59.452	37.037	0.00	0.00	0.00	1.98
2323	8634	6.466413	GTGCGTACATCTCGACATTCTATATC	59.534	42.308	0.00	0.00	0.00	1.63
2325	8636	5.469084	AGTGCGTACATCTCGACATTCTATA	59.531	40.000	6.38	0.00	0.00	1.31
2330	8641	2.941453	AGTGCGTACATCTCGACATT	57.059	45.000	6.38	0.00	0.00	2.71
2336	8647	7.006210	CGAACAAAAATTTAGTGCGTACATCTC	59.994	37.037	6.38	0.00	29.85	2.75
2344	8655	6.446659	AAATCCGAACAAAAATTTAGTGCG	57.553	33.333	14.16	14.16	34.14	5.34
2374	8685	9.959749	GTCACAGGTAAAACTATTTCAAAATGA	57.040	29.630	0.00	0.00	0.00	2.57
2375	8686	9.743057	TGTCACAGGTAAAACTATTTCAAAATG	57.257	29.630	0.00	0.00	0.00	2.32
2376	8687	9.965824	CTGTCACAGGTAAAACTATTTCAAAAT	57.034	29.630	0.00	0.00	0.00	1.82
2377	8688	8.410141	CCTGTCACAGGTAAAACTATTTCAAAA	58.590	33.333	16.65	0.00	45.82	2.44
2405	8716	0.759812	TTGGCACATGGGGCATATGG	60.760	55.000	26.41	0.00	43.37	2.74
2430	8743	1.546099	GGGGCTACCGAAAGTGGAAAA	60.546	52.381	0.00	0.00	37.78	2.29
2435	8748	1.221021	GGAGGGGCTACCGAAAGTG	59.779	63.158	0.00	0.00	46.96	3.16
2436	8749	0.546988	AAGGAGGGGCTACCGAAAGT	60.547	55.000	0.00	0.00	46.96	2.66
2442	8755	2.189784	GCGAAAGGAGGGGCTACC	59.810	66.667	0.00	0.00	40.67	3.18
2443	8756	1.449778	GTGCGAAAGGAGGGGCTAC	60.450	63.158	0.00	0.00	0.00	3.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.