Multiple sequence alignment - TraesCS1B01G079300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G079300 chr1B 100.000 1693 0 0 857 2549 61966351 61968043 0.000000e+00 3127.0
1 TraesCS1B01G079300 chr1B 100.000 567 0 0 1 567 61965495 61966061 0.000000e+00 1048.0
2 TraesCS1B01G079300 chr1B 84.642 573 52 12 991 1549 62061294 62061844 2.890000e-149 538.0
3 TraesCS1B01G079300 chr1B 86.702 188 13 5 992 1167 62004525 62004712 5.560000e-47 198.0
4 TraesCS1B01G079300 chr1B 83.886 211 23 4 1148 1358 62004721 62004920 9.310000e-45 191.0
5 TraesCS1B01G079300 chr1B 88.415 164 12 1 1386 1549 62018701 62018857 9.310000e-45 191.0
6 TraesCS1B01G079300 chr1B 93.333 105 7 0 991 1095 62080264 62080368 3.400000e-34 156.0
7 TraesCS1B01G079300 chr1B 93.182 88 6 0 902 989 62061173 62061260 2.060000e-26 130.0
8 TraesCS1B01G079300 chr1B 87.129 101 9 2 893 989 62004390 62004490 7.450000e-21 111.0
9 TraesCS1B01G079300 chr1B 77.387 199 34 8 57 254 62003222 62003410 9.640000e-20 108.0
10 TraesCS1B01G079300 chr1B 83.019 106 9 6 252 356 62022257 62022354 1.260000e-13 87.9
11 TraesCS1B01G079300 chr1B 95.745 47 2 0 1752 1798 62062023 62062069 2.720000e-10 76.8
12 TraesCS1B01G079300 chr1B 97.674 43 1 0 2507 2549 61990069 61990027 9.780000e-10 75.0
13 TraesCS1B01G079300 chr1D 85.543 1169 67 31 867 1970 41822871 41824002 0.000000e+00 1129.0
14 TraesCS1B01G079300 chr1D 82.456 684 61 24 893 1549 41868240 41868891 6.200000e-151 544.0
15 TraesCS1B01G079300 chr1D 81.111 540 28 22 45 564 41822370 41822855 5.180000e-97 364.0
16 TraesCS1B01G079300 chr1D 95.294 170 7 1 2129 2297 178466474 178466305 4.180000e-68 268.0
17 TraesCS1B01G079300 chr1D 97.778 45 0 1 2462 2506 19956988 19957031 2.720000e-10 76.8
18 TraesCS1B01G079300 chr1D 97.778 45 0 1 2462 2506 254496959 254497002 2.720000e-10 76.8
19 TraesCS1B01G079300 chr1D 97.778 45 0 1 2462 2506 483915661 483915618 2.720000e-10 76.8
20 TraesCS1B01G079300 chr1D 97.143 35 1 0 288 322 41825862 41825896 2.740000e-05 60.2
21 TraesCS1B01G079300 chr1A 87.070 843 50 28 993 1804 41875503 41876317 0.000000e+00 898.0
22 TraesCS1B01G079300 chr1A 84.387 506 24 23 45 526 41874808 41875282 1.800000e-121 446.0
23 TraesCS1B01G079300 chr1A 90.970 299 18 3 991 1288 41906159 41906449 6.610000e-106 394.0
24 TraesCS1B01G079300 chr1A 82.900 269 30 11 991 1250 41894826 41895087 7.090000e-56 228.0
25 TraesCS1B01G079300 chr1A 86.559 186 18 1 1364 1549 41906484 41906662 5.560000e-47 198.0
26 TraesCS1B01G079300 chr1A 88.112 143 6 4 857 989 41875328 41875469 2.620000e-35 159.0
27 TraesCS1B01G079300 chr1A 78.788 198 32 6 59 254 41904097 41904286 9.580000e-25 124.0
28 TraesCS1B01G079300 chr1A 80.124 161 26 4 346 503 41904338 41904495 5.760000e-22 115.0
29 TraesCS1B01G079300 chr1A 91.667 60 5 0 1634 1693 41906691 41906750 1.630000e-12 84.2
30 TraesCS1B01G079300 chr7A 96.970 165 4 1 2133 2296 320981337 320981173 2.500000e-70 276.0
31 TraesCS1B01G079300 chr6A 95.349 172 7 1 2126 2296 153669705 153669876 3.230000e-69 272.0
32 TraesCS1B01G079300 chr6A 98.077 52 1 0 2411 2462 532319166 532319217 9.710000e-15 91.6
33 TraesCS1B01G079300 chr7D 95.833 168 6 1 2133 2299 517575399 517575232 1.160000e-68 270.0
34 TraesCS1B01G079300 chr7D 94.286 175 8 2 2128 2300 39001454 39001280 1.500000e-67 267.0
35 TraesCS1B01G079300 chr7D 97.778 45 0 1 2462 2506 484627800 484627843 2.720000e-10 76.8
36 TraesCS1B01G079300 chr3A 95.833 168 5 2 2133 2299 649812004 649811838 1.160000e-68 270.0
37 TraesCS1B01G079300 chr3A 98.077 52 1 0 2411 2462 721545930 721545981 9.710000e-15 91.6
38 TraesCS1B01G079300 chr5B 94.286 175 9 1 2126 2299 427931373 427931199 1.500000e-67 267.0
39 TraesCS1B01G079300 chr5B 96.154 52 2 0 2411 2462 38775233 38775182 4.520000e-13 86.1
40 TraesCS1B01G079300 chr5B 88.571 70 7 1 1992 2061 474975442 474975510 1.630000e-12 84.2
41 TraesCS1B01G079300 chr5A 94.286 175 8 2 2133 2306 369127667 369127494 1.500000e-67 267.0
42 TraesCS1B01G079300 chr5A 90.000 60 6 0 1634 1693 44104787 44104846 7.560000e-11 78.7
43 TraesCS1B01G079300 chr2D 93.370 181 11 1 2117 2296 647970077 647970257 1.500000e-67 267.0
44 TraesCS1B01G079300 chr2D 77.692 130 24 5 1992 2119 608656679 608656553 9.780000e-10 75.0
45 TraesCS1B01G079300 chrUn 80.921 152 20 6 1978 2122 27363101 27362952 7.450000e-21 111.0
46 TraesCS1B01G079300 chrUn 97.778 45 0 1 2462 2506 440190234 440190277 2.720000e-10 76.8
47 TraesCS1B01G079300 chr6B 98.148 54 1 0 2409 2462 712069756 712069703 7.510000e-16 95.3
48 TraesCS1B01G079300 chr6B 95.455 44 2 0 2506 2549 114073513 114073470 1.270000e-08 71.3
49 TraesCS1B01G079300 chr2B 98.113 53 1 0 2410 2462 765114827 765114775 2.700000e-15 93.5
50 TraesCS1B01G079300 chr4A 98.077 52 1 0 2411 2462 736127470 736127521 9.710000e-15 91.6
51 TraesCS1B01G079300 chr3B 98.077 52 1 0 2411 2462 11915158 11915107 9.710000e-15 91.6
52 TraesCS1B01G079300 chr3B 97.959 49 1 0 2411 2459 487555288 487555336 4.520000e-13 86.1
53 TraesCS1B01G079300 chr3B 100.000 40 0 0 2507 2546 11908157 11908196 9.780000e-10 75.0
54 TraesCS1B01G079300 chr3B 97.674 43 1 0 2507 2549 11915104 11915062 9.780000e-10 75.0
55 TraesCS1B01G079300 chr4B 93.220 59 4 0 2410 2468 642912783 642912725 1.260000e-13 87.9
56 TraesCS1B01G079300 chr4B 100.000 43 0 0 2507 2549 119326221 119326179 2.100000e-11 80.5
57 TraesCS1B01G079300 chr4B 100.000 40 0 0 2507 2546 142921174 142921213 9.780000e-10 75.0
58 TraesCS1B01G079300 chr4B 97.500 40 1 0 2507 2546 119305646 119305685 4.550000e-08 69.4
59 TraesCS1B01G079300 chr7B 97.778 45 1 0 2462 2506 111905305 111905349 7.560000e-11 78.7
60 TraesCS1B01G079300 chr7B 100.000 38 0 0 2509 2546 320261517 320261554 1.270000e-08 71.3
61 TraesCS1B01G079300 chr7B 95.349 43 2 0 2507 2549 320266322 320266280 4.550000e-08 69.4
62 TraesCS1B01G079300 chr5D 97.778 45 0 1 2462 2506 6202324 6202281 2.720000e-10 76.8
63 TraesCS1B01G079300 chr5D 97.778 45 0 1 2462 2506 240136660 240136703 2.720000e-10 76.8
64 TraesCS1B01G079300 chr3D 97.778 45 0 1 2462 2506 21903579 21903622 2.720000e-10 76.8
65 TraesCS1B01G079300 chr2A 81.707 82 8 5 1945 2022 709738975 709738897 7.610000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G079300 chr1B 61965495 61968043 2548 False 2087.500000 3127 100.000000 1 2549 2 chr1B.!!$F2 2548
1 TraesCS1B01G079300 chr1B 62061173 62062069 896 False 248.266667 538 91.189667 902 1798 3 chr1B.!!$F5 896
2 TraesCS1B01G079300 chr1D 41868240 41868891 651 False 544.000000 544 82.456000 893 1549 1 chr1D.!!$F2 656
3 TraesCS1B01G079300 chr1D 41822370 41825896 3526 False 517.733333 1129 87.932333 45 1970 3 chr1D.!!$F4 1925
4 TraesCS1B01G079300 chr1A 41874808 41876317 1509 False 501.000000 898 86.523000 45 1804 3 chr1A.!!$F2 1759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 414 0.253044 GCTGAGTAGATTGGGGCACA 59.747 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2179 0.036952 CGATGCAGAGGCCGGATAAT 60.037 55.0 5.05 0.0 40.13 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.492337 ACGGAGGGAGTGCAAATTAAAA 58.508 40.909 0.00 0.00 0.00 1.52
70 71 4.082245 ACGGAGGGAGTGCAAATTAAAATG 60.082 41.667 0.00 0.00 0.00 2.32
90 98 4.466567 TGCATGCTACAAATATGTACGC 57.533 40.909 20.33 0.00 41.05 4.42
95 103 4.749976 TGCTACAAATATGTACGCACAGA 58.250 39.130 0.00 0.00 39.27 3.41
103 111 7.386848 ACAAATATGTACGCACAGACTTTTACT 59.613 33.333 0.00 0.00 38.24 2.24
120 128 6.265422 ACTTTTACTGTGATTCCCTCAAAAGG 59.735 38.462 9.90 0.00 42.95 3.11
181 192 5.478679 TCTGTTTCAACTTCCAAGTTCCAAA 59.521 36.000 1.52 2.58 45.65 3.28
202 213 3.808728 ACTACTGACTGAGCAAGCAAAA 58.191 40.909 0.00 0.00 0.00 2.44
203 214 4.199310 ACTACTGACTGAGCAAGCAAAAA 58.801 39.130 0.00 0.00 0.00 1.94
237 248 3.969117 TTGATTCAACACACACTCTGC 57.031 42.857 0.00 0.00 0.00 4.26
247 258 1.933853 ACACACTCTGCGAGTCAAAAC 59.066 47.619 8.02 0.00 41.37 2.43
261 272 2.033424 GTCAAAACTGTCAGTTGAGGCC 59.967 50.000 18.84 0.00 38.66 5.19
275 291 1.271001 TGAGGCCAACTGTGACATGAG 60.271 52.381 5.01 0.00 0.00 2.90
322 338 2.543848 CGTTGAACTAGCACTTGCAAGA 59.456 45.455 32.50 9.45 45.16 3.02
323 339 3.187227 CGTTGAACTAGCACTTGCAAGAT 59.813 43.478 32.50 18.88 45.16 2.40
324 340 4.388773 CGTTGAACTAGCACTTGCAAGATA 59.611 41.667 32.50 18.98 45.16 1.98
398 414 0.253044 GCTGAGTAGATTGGGGCACA 59.747 55.000 0.00 0.00 0.00 4.57
403 419 2.500098 GAGTAGATTGGGGCACACACTA 59.500 50.000 0.00 0.00 0.00 2.74
438 466 3.706600 AATCTTTTTGGGCACATGCAT 57.293 38.095 6.15 0.00 44.36 3.96
439 467 2.459060 TCTTTTTGGGCACATGCATG 57.541 45.000 25.09 25.09 44.36 4.06
440 468 0.800012 CTTTTTGGGCACATGCATGC 59.200 50.000 26.53 15.36 45.34 4.06
529 565 1.285023 GCAGCAACAAGAGCCACAG 59.715 57.895 0.00 0.00 0.00 3.66
532 568 1.406539 CAGCAACAAGAGCCACAGTTT 59.593 47.619 0.00 0.00 0.00 2.66
541 577 1.620822 AGCCACAGTTTGGATTCACC 58.379 50.000 0.00 0.00 43.59 4.02
558 594 1.035139 ACCGTAGAACACCAACGTCT 58.965 50.000 0.00 0.00 34.90 4.18
564 600 0.320508 GAACACCAACGTCTCTCCCC 60.321 60.000 0.00 0.00 0.00 4.81
565 601 1.765597 AACACCAACGTCTCTCCCCC 61.766 60.000 0.00 0.00 0.00 5.40
566 602 2.995574 ACCAACGTCTCTCCCCCG 60.996 66.667 0.00 0.00 0.00 5.73
898 939 1.447140 GCATCCGCGGTAGTTCACA 60.447 57.895 27.15 2.48 0.00 3.58
909 950 1.525619 GTAGTTCACACAGTTCACGCC 59.474 52.381 0.00 0.00 0.00 5.68
1155 1253 0.041238 ACTCGGGGGAGAAGATCACA 59.959 55.000 0.00 0.00 30.31 3.58
1246 1344 3.449632 GAACCGTATGCCTCTTTCTCTC 58.550 50.000 0.00 0.00 0.00 3.20
1247 1345 2.741145 ACCGTATGCCTCTTTCTCTCT 58.259 47.619 0.00 0.00 0.00 3.10
1248 1346 2.691011 ACCGTATGCCTCTTTCTCTCTC 59.309 50.000 0.00 0.00 0.00 3.20
1249 1347 2.955660 CCGTATGCCTCTTTCTCTCTCT 59.044 50.000 0.00 0.00 0.00 3.10
1250 1348 3.383185 CCGTATGCCTCTTTCTCTCTCTT 59.617 47.826 0.00 0.00 0.00 2.85
1251 1349 4.142049 CCGTATGCCTCTTTCTCTCTCTTT 60.142 45.833 0.00 0.00 0.00 2.52
1252 1350 5.040635 CGTATGCCTCTTTCTCTCTCTTTC 58.959 45.833 0.00 0.00 0.00 2.62
1253 1351 5.163561 CGTATGCCTCTTTCTCTCTCTTTCT 60.164 44.000 0.00 0.00 0.00 2.52
1311 1452 4.307908 GCCGTGCACGTGTGGTTC 62.308 66.667 34.81 12.65 37.74 3.62
1361 1503 2.522836 AGCTTGCGATCGATCTTCAT 57.477 45.000 21.57 4.05 0.00 2.57
1415 1560 2.203938 TCGGCCCTGGAGAAGGTT 60.204 61.111 0.00 0.00 45.78 3.50
1476 1622 1.893919 GCGCCTCCCTATCTCATCCC 61.894 65.000 0.00 0.00 0.00 3.85
1487 1633 5.454471 CCCTATCTCATCCCTTGTTTCAGAG 60.454 48.000 0.00 0.00 0.00 3.35
1500 1646 3.876914 TGTTTCAGAGTTCAGAACGCAAT 59.123 39.130 18.09 0.00 36.23 3.56
1508 1654 3.563808 AGTTCAGAACGCAATTGTAAGCA 59.436 39.130 7.40 0.00 36.23 3.91
1509 1655 4.036262 AGTTCAGAACGCAATTGTAAGCAA 59.964 37.500 7.40 0.00 36.30 3.91
1510 1656 3.884169 TCAGAACGCAATTGTAAGCAAC 58.116 40.909 7.40 0.00 37.44 4.17
1511 1657 3.563808 TCAGAACGCAATTGTAAGCAACT 59.436 39.130 7.40 0.00 37.44 3.16
1512 1658 3.665409 CAGAACGCAATTGTAAGCAACTG 59.335 43.478 7.40 4.87 37.44 3.16
1513 1659 3.563808 AGAACGCAATTGTAAGCAACTGA 59.436 39.130 7.40 0.00 34.10 3.41
1514 1660 3.542712 ACGCAATTGTAAGCAACTGAG 57.457 42.857 7.40 0.00 37.58 3.35
1524 1684 5.074804 TGTAAGCAACTGAGTACTGACCTA 58.925 41.667 0.00 0.00 0.00 3.08
1578 1742 3.290776 GTGAGTGAGCTTTCACGGT 57.709 52.632 10.06 0.00 44.71 4.83
1596 1760 2.360852 GCTCACTGCATGCCCAGT 60.361 61.111 16.68 10.26 46.47 4.00
1600 1764 2.282674 ACTGCATGCCCAGTGGTG 60.283 61.111 16.68 0.66 44.00 4.17
1601 1765 3.066190 CTGCATGCCCAGTGGTGG 61.066 66.667 16.68 0.00 44.56 4.61
1602 1766 3.873679 CTGCATGCCCAGTGGTGGT 62.874 63.158 16.68 0.00 43.23 4.16
1603 1767 2.601367 GCATGCCCAGTGGTGGTT 60.601 61.111 6.36 0.00 43.23 3.67
1604 1768 2.934570 GCATGCCCAGTGGTGGTTG 61.935 63.158 6.36 1.50 43.23 3.77
1605 1769 2.601367 ATGCCCAGTGGTGGTTGC 60.601 61.111 8.74 4.31 43.23 4.17
1629 1793 1.904865 CAGTGGTGGTTGCATGCCT 60.905 57.895 16.68 0.00 0.00 4.75
1659 1823 2.172293 GAGATTGGTGATGGAGCTCCTT 59.828 50.000 32.28 26.58 36.82 3.36
1694 1858 3.123804 CAGCGAGAATACATTAGGCGTT 58.876 45.455 0.00 0.00 0.00 4.84
1805 1996 9.474249 GGTTCGAGAAAGAAAATATTTCGTTAG 57.526 33.333 0.10 1.45 40.75 2.34
1807 1998 7.681903 TCGAGAAAGAAAATATTTCGTTAGGC 58.318 34.615 0.10 0.00 40.75 3.93
1819 2026 5.459110 TTTCGTTAGGCGCTTTAGTATTG 57.541 39.130 7.64 0.00 41.07 1.90
1841 2048 7.969536 TTGACAGATTAAATAGAGCATAGCC 57.030 36.000 0.00 0.00 0.00 3.93
1854 2061 5.063204 AGAGCATAGCCGCACAAATATAAA 58.937 37.500 0.00 0.00 0.00 1.40
1855 2062 5.180117 AGAGCATAGCCGCACAAATATAAAG 59.820 40.000 0.00 0.00 0.00 1.85
1863 2070 7.767261 AGCCGCACAAATATAAAGAAATACAA 58.233 30.769 0.00 0.00 0.00 2.41
1876 2083 6.590234 AAGAAATACAAATGGGAAGGACAC 57.410 37.500 0.00 0.00 0.00 3.67
1881 2088 4.670896 ACAAATGGGAAGGACACAAAAG 57.329 40.909 0.00 0.00 34.70 2.27
1884 2091 4.937201 AATGGGAAGGACACAAAAGAAC 57.063 40.909 0.00 0.00 34.70 3.01
1909 2116 5.966742 AAGAAACAAAGAGGGATACAAGC 57.033 39.130 0.00 0.00 39.74 4.01
1917 2124 0.831307 AGGGATACAAGCGAGGAACC 59.169 55.000 0.00 0.00 39.74 3.62
1935 2142 6.653989 AGGAACCGATTGAGATAGAAAACAT 58.346 36.000 0.00 0.00 0.00 2.71
1952 2159 6.897413 AGAAAACATGGGGATACATTAGCTTT 59.103 34.615 0.00 0.00 39.74 3.51
1954 2161 6.469782 AACATGGGGATACATTAGCTTTTG 57.530 37.500 0.00 0.00 39.74 2.44
1981 2188 8.561738 TTGAAAAGAAGGATATATTATCCGGC 57.438 34.615 0.00 4.82 42.87 6.13
1982 2189 7.110155 TGAAAAGAAGGATATATTATCCGGCC 58.890 38.462 0.00 0.00 42.87 6.13
1983 2190 6.893020 AAAGAAGGATATATTATCCGGCCT 57.107 37.500 0.00 0.00 42.87 5.19
1984 2191 6.487299 AAGAAGGATATATTATCCGGCCTC 57.513 41.667 0.00 4.68 42.87 4.70
1985 2192 5.782925 AGAAGGATATATTATCCGGCCTCT 58.217 41.667 0.00 6.39 42.87 3.69
1986 2193 5.600484 AGAAGGATATATTATCCGGCCTCTG 59.400 44.000 0.00 0.00 42.87 3.35
1987 2194 3.643792 AGGATATATTATCCGGCCTCTGC 59.356 47.826 0.00 0.00 42.87 4.26
1988 2195 3.388024 GGATATATTATCCGGCCTCTGCA 59.612 47.826 0.00 0.00 40.13 4.41
1989 2196 4.040952 GGATATATTATCCGGCCTCTGCAT 59.959 45.833 0.00 0.00 40.13 3.96
1990 2197 3.550437 ATATTATCCGGCCTCTGCATC 57.450 47.619 0.00 0.00 40.13 3.91
1991 2198 0.036952 ATTATCCGGCCTCTGCATCG 60.037 55.000 0.00 0.00 40.13 3.84
1992 2199 1.112916 TTATCCGGCCTCTGCATCGA 61.113 55.000 0.00 0.00 40.13 3.59
1993 2200 0.900182 TATCCGGCCTCTGCATCGAT 60.900 55.000 0.00 0.00 40.13 3.59
1994 2201 2.446142 ATCCGGCCTCTGCATCGATG 62.446 60.000 21.27 21.27 40.13 3.84
2012 2219 6.502136 TCGATGCACACAACCATTTTATTA 57.498 33.333 0.00 0.00 0.00 0.98
2034 2241 3.182341 ACAAAGTAGCACCAACGTACA 57.818 42.857 0.00 0.00 0.00 2.90
2044 2251 5.726397 AGCACCAACGTACATAGTTCAATA 58.274 37.500 0.00 0.00 0.00 1.90
2061 2268 7.771183 AGTTCAATACAAGTTCTCAAGCAAAA 58.229 30.769 0.00 0.00 0.00 2.44
2111 2322 8.481132 GCAACTAGCGAAAATATGACTAAATG 57.519 34.615 0.00 0.00 0.00 2.32
2114 2325 9.601217 AACTAGCGAAAATATGACTAAATGACT 57.399 29.630 0.00 0.00 0.00 3.41
2123 2334 9.747898 AAATATGACTAAATGACTAAACACCCA 57.252 29.630 0.00 0.00 0.00 4.51
2124 2335 8.732746 ATATGACTAAATGACTAAACACCCAC 57.267 34.615 0.00 0.00 0.00 4.61
2125 2336 6.182507 TGACTAAATGACTAAACACCCACT 57.817 37.500 0.00 0.00 0.00 4.00
2126 2337 5.995282 TGACTAAATGACTAAACACCCACTG 59.005 40.000 0.00 0.00 0.00 3.66
2127 2338 5.937111 ACTAAATGACTAAACACCCACTGT 58.063 37.500 0.00 0.00 32.89 3.55
2128 2339 5.995897 ACTAAATGACTAAACACCCACTGTC 59.004 40.000 0.00 0.00 30.29 3.51
2129 2340 4.431416 AATGACTAAACACCCACTGTCA 57.569 40.909 0.00 0.00 38.52 3.58
2130 2341 4.640771 ATGACTAAACACCCACTGTCAT 57.359 40.909 0.00 0.00 39.41 3.06
2133 2344 5.931294 TGACTAAACACCCACTGTCATTTA 58.069 37.500 0.00 0.00 30.29 1.40
2134 2345 5.761234 TGACTAAACACCCACTGTCATTTAC 59.239 40.000 0.00 0.00 30.29 2.01
2136 2347 5.995897 ACTAAACACCCACTGTCATTTACTC 59.004 40.000 0.00 0.00 30.29 2.59
2137 2348 3.418684 ACACCCACTGTCATTTACTCC 57.581 47.619 0.00 0.00 0.00 3.85
2138 2349 2.039879 ACACCCACTGTCATTTACTCCC 59.960 50.000 0.00 0.00 0.00 4.30
2139 2350 2.305927 CACCCACTGTCATTTACTCCCT 59.694 50.000 0.00 0.00 0.00 4.20
2141 2352 2.840651 CCCACTGTCATTTACTCCCTCT 59.159 50.000 0.00 0.00 0.00 3.69
2142 2353 3.369892 CCCACTGTCATTTACTCCCTCTG 60.370 52.174 0.00 0.00 0.00 3.35
2143 2354 3.261897 CCACTGTCATTTACTCCCTCTGT 59.738 47.826 0.00 0.00 0.00 3.41
2144 2355 4.263068 CCACTGTCATTTACTCCCTCTGTT 60.263 45.833 0.00 0.00 0.00 3.16
2145 2356 4.932200 CACTGTCATTTACTCCCTCTGTTC 59.068 45.833 0.00 0.00 0.00 3.18
2147 2358 4.168101 TGTCATTTACTCCCTCTGTTCCT 58.832 43.478 0.00 0.00 0.00 3.36
2152 2363 8.483758 GTCATTTACTCCCTCTGTTCCTAAATA 58.516 37.037 0.00 0.00 0.00 1.40
2153 2364 9.225682 TCATTTACTCCCTCTGTTCCTAAATAT 57.774 33.333 0.00 0.00 0.00 1.28
2154 2365 9.853177 CATTTACTCCCTCTGTTCCTAAATATT 57.147 33.333 0.00 0.00 0.00 1.28
2156 2367 9.681062 TTTACTCCCTCTGTTCCTAAATATTTG 57.319 33.333 11.05 1.40 0.00 2.32
2157 2368 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
2158 2369 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
2159 2370 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
2160 2371 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
2161 2372 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
2162 2373 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
2163 2374 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
2194 2405 8.703604 TTTCAATAAGTGACTACATACAGAGC 57.296 34.615 0.00 0.00 35.39 4.09
2195 2406 7.404671 TCAATAAGTGACTACATACAGAGCA 57.595 36.000 0.00 0.00 0.00 4.26
2196 2407 7.836842 TCAATAAGTGACTACATACAGAGCAA 58.163 34.615 0.00 0.00 0.00 3.91
2197 2408 8.311109 TCAATAAGTGACTACATACAGAGCAAA 58.689 33.333 0.00 0.00 0.00 3.68
2198 2409 8.935844 CAATAAGTGACTACATACAGAGCAAAA 58.064 33.333 0.00 0.00 0.00 2.44
2199 2410 9.672673 AATAAGTGACTACATACAGAGCAAAAT 57.327 29.630 0.00 0.00 0.00 1.82
2200 2411 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
2201 2412 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
2202 2413 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
2203 2414 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
2204 2415 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
2205 2416 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2206 2417 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2207 2418 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2208 2419 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2209 2420 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2210 2421 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2211 2422 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2212 2423 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2213 2424 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2245 2456 9.653287 AATATGTCTAAATACATCCGTATGTGG 57.347 33.333 3.56 0.00 45.99 4.17
2246 2457 6.474140 TGTCTAAATACATCCGTATGTGGT 57.526 37.500 3.56 0.00 45.99 4.16
2247 2458 7.585579 TGTCTAAATACATCCGTATGTGGTA 57.414 36.000 3.56 0.00 45.99 3.25
2248 2459 7.654568 TGTCTAAATACATCCGTATGTGGTAG 58.345 38.462 3.56 3.16 45.99 3.18
2249 2460 7.286087 TGTCTAAATACATCCGTATGTGGTAGT 59.714 37.037 3.56 0.00 45.99 2.73
2250 2461 7.806960 GTCTAAATACATCCGTATGTGGTAGTC 59.193 40.741 3.56 0.00 45.99 2.59
2251 2462 5.464030 AATACATCCGTATGTGGTAGTCC 57.536 43.478 3.56 0.00 45.99 3.85
2252 2463 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2253 2464 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2254 2465 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2255 2466 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2256 2467 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2257 2468 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2258 2469 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2259 2470 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2260 2471 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2261 2472 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2262 2473 6.238374 CGTATGTGGTAGTCCATTTGAAATCC 60.238 42.308 0.00 0.00 46.20 3.01
2263 2474 5.255397 TGTGGTAGTCCATTTGAAATCCT 57.745 39.130 0.00 0.00 46.20 3.24
2264 2475 6.381498 TGTGGTAGTCCATTTGAAATCCTA 57.619 37.500 0.00 0.00 46.20 2.94
2265 2476 6.785076 TGTGGTAGTCCATTTGAAATCCTAA 58.215 36.000 0.00 0.00 46.20 2.69
2266 2477 7.235079 TGTGGTAGTCCATTTGAAATCCTAAA 58.765 34.615 0.00 0.00 46.20 1.85
2267 2478 7.726291 TGTGGTAGTCCATTTGAAATCCTAAAA 59.274 33.333 0.00 0.00 46.20 1.52
2268 2479 8.581578 GTGGTAGTCCATTTGAAATCCTAAAAA 58.418 33.333 0.00 0.00 46.20 1.94
2269 2480 8.802267 TGGTAGTCCATTTGAAATCCTAAAAAG 58.198 33.333 0.00 0.00 39.03 2.27
2270 2481 9.020731 GGTAGTCCATTTGAAATCCTAAAAAGA 57.979 33.333 0.00 0.00 0.00 2.52
2271 2482 9.841880 GTAGTCCATTTGAAATCCTAAAAAGAC 57.158 33.333 0.00 0.00 0.00 3.01
2272 2483 8.477419 AGTCCATTTGAAATCCTAAAAAGACA 57.523 30.769 0.00 0.00 30.54 3.41
2273 2484 8.923270 AGTCCATTTGAAATCCTAAAAAGACAA 58.077 29.630 0.00 0.00 30.54 3.18
2274 2485 9.541143 GTCCATTTGAAATCCTAAAAAGACAAA 57.459 29.630 0.00 0.00 0.00 2.83
2287 2498 9.269415 CCTAAAAAGACAAATATTTACGAACGG 57.731 33.333 0.00 0.00 0.00 4.44
2289 2500 8.944212 AAAAAGACAAATATTTACGAACGGAG 57.056 30.769 0.00 0.00 0.00 4.63
2290 2501 6.657836 AAGACAAATATTTACGAACGGAGG 57.342 37.500 0.00 0.00 0.00 4.30
2291 2502 5.114081 AGACAAATATTTACGAACGGAGGG 58.886 41.667 0.00 0.00 0.00 4.30
2292 2503 5.088680 ACAAATATTTACGAACGGAGGGA 57.911 39.130 0.00 0.00 0.00 4.20
2293 2504 5.114081 ACAAATATTTACGAACGGAGGGAG 58.886 41.667 0.00 0.00 0.00 4.30
2294 2505 5.114081 CAAATATTTACGAACGGAGGGAGT 58.886 41.667 0.00 0.00 0.00 3.85
2295 2506 6.127366 ACAAATATTTACGAACGGAGGGAGTA 60.127 38.462 0.00 0.00 0.00 2.59
2296 2507 6.469782 AATATTTACGAACGGAGGGAGTAA 57.530 37.500 0.00 0.00 0.00 2.24
2297 2508 4.806640 ATTTACGAACGGAGGGAGTAAA 57.193 40.909 0.00 2.28 40.21 2.01
2298 2509 4.806640 TTTACGAACGGAGGGAGTAAAT 57.193 40.909 0.00 0.00 33.86 1.40
2299 2510 2.955477 ACGAACGGAGGGAGTAAATC 57.045 50.000 0.00 0.00 0.00 2.17
2300 2511 1.133790 ACGAACGGAGGGAGTAAATCG 59.866 52.381 0.00 0.00 35.36 3.34
2301 2512 1.535437 CGAACGGAGGGAGTAAATCGG 60.535 57.143 0.00 0.00 0.00 4.18
2306 2517 2.629051 GGAGGGAGTAAATCGGTTGTG 58.371 52.381 0.00 0.00 0.00 3.33
2315 2526 3.992943 AAATCGGTTGTGAGTATCCCA 57.007 42.857 0.00 0.00 0.00 4.37
2323 2534 2.047061 TGTGAGTATCCCATGCTACCC 58.953 52.381 0.00 0.00 0.00 3.69
2325 2536 2.300437 GTGAGTATCCCATGCTACCCTC 59.700 54.545 0.00 0.00 0.00 4.30
2343 2554 1.227823 CTCTCAACGGTTGCACCCA 60.228 57.895 15.89 0.00 33.75 4.51
2346 2557 1.086696 CTCAACGGTTGCACCCATAG 58.913 55.000 15.89 2.81 33.75 2.23
2347 2558 0.687920 TCAACGGTTGCACCCATAGA 59.312 50.000 15.89 0.00 33.75 1.98
2357 2568 2.442878 TGCACCCATAGACCATATGCTT 59.557 45.455 0.00 0.00 32.81 3.91
2361 2572 3.328931 ACCCATAGACCATATGCTTCCTG 59.671 47.826 0.00 0.00 0.00 3.86
2363 2574 4.226846 CCCATAGACCATATGCTTCCTGAT 59.773 45.833 0.00 0.00 0.00 2.90
2366 2577 6.718454 CCATAGACCATATGCTTCCTGATTTT 59.282 38.462 0.00 0.00 0.00 1.82
2367 2578 7.094463 CCATAGACCATATGCTTCCTGATTTTC 60.094 40.741 0.00 0.00 0.00 2.29
2374 2585 1.800286 GCTTCCTGATTTTCGCATGGC 60.800 52.381 0.00 0.00 0.00 4.40
2378 2589 1.473677 CCTGATTTTCGCATGGCTGAA 59.526 47.619 0.00 0.00 0.00 3.02
2383 2594 4.157472 TGATTTTCGCATGGCTGAATAACA 59.843 37.500 0.00 0.00 0.00 2.41
2392 2603 3.068560 TGGCTGAATAACAACCACGTAC 58.931 45.455 0.00 0.00 39.48 3.67
2393 2604 2.093152 GGCTGAATAACAACCACGTACG 59.907 50.000 15.01 15.01 35.08 3.67
2396 2607 4.178540 CTGAATAACAACCACGTACGGAT 58.821 43.478 21.06 0.82 0.00 4.18
2397 2608 5.321959 TGAATAACAACCACGTACGGATA 57.678 39.130 21.06 0.58 0.00 2.59
2398 2609 5.904941 TGAATAACAACCACGTACGGATAT 58.095 37.500 21.06 3.04 0.00 1.63
2401 2612 7.809331 TGAATAACAACCACGTACGGATATATC 59.191 37.037 21.06 3.96 0.00 1.63
2414 2625 3.966154 GGATATATCCATACGCCGAGTG 58.034 50.000 24.41 0.00 46.38 3.51
2415 2626 3.630769 GGATATATCCATACGCCGAGTGA 59.369 47.826 24.41 0.00 46.38 3.41
2418 2629 2.910688 ATCCATACGCCGAGTGAATT 57.089 45.000 0.00 0.00 0.00 2.17
2419 2630 1.934589 TCCATACGCCGAGTGAATTG 58.065 50.000 0.00 0.00 0.00 2.32
2421 2632 1.006086 CATACGCCGAGTGAATTGCA 58.994 50.000 0.00 0.00 0.00 4.08
2422 2633 1.396648 CATACGCCGAGTGAATTGCAA 59.603 47.619 0.00 0.00 0.00 4.08
2423 2634 1.075542 TACGCCGAGTGAATTGCAAG 58.924 50.000 4.94 0.00 0.00 4.01
2424 2635 0.602638 ACGCCGAGTGAATTGCAAGA 60.603 50.000 4.94 0.00 0.00 3.02
2425 2636 0.516877 CGCCGAGTGAATTGCAAGAA 59.483 50.000 4.94 0.00 0.00 2.52
2428 2639 2.922335 GCCGAGTGAATTGCAAGAAACC 60.922 50.000 4.94 0.00 0.00 3.27
2429 2640 2.293122 CCGAGTGAATTGCAAGAAACCA 59.707 45.455 4.94 0.00 0.00 3.67
2431 2642 4.161333 CGAGTGAATTGCAAGAAACCATC 58.839 43.478 4.94 0.00 0.00 3.51
2432 2643 4.320421 CGAGTGAATTGCAAGAAACCATCA 60.320 41.667 4.94 0.00 0.00 3.07
2434 2645 4.341806 AGTGAATTGCAAGAAACCATCACA 59.658 37.500 4.94 0.00 38.64 3.58
2435 2646 5.011329 AGTGAATTGCAAGAAACCATCACAT 59.989 36.000 4.94 0.00 38.64 3.21
2436 2647 5.697633 GTGAATTGCAAGAAACCATCACATT 59.302 36.000 4.94 0.00 36.75 2.71
2438 2649 6.203145 TGAATTGCAAGAAACCATCACATTTG 59.797 34.615 4.94 0.00 0.00 2.32
2439 2650 3.992643 TGCAAGAAACCATCACATTTGG 58.007 40.909 0.00 0.00 40.26 3.28
2440 2651 3.640498 TGCAAGAAACCATCACATTTGGA 59.360 39.130 0.00 0.00 37.69 3.53
2443 2654 3.771216 AGAAACCATCACATTTGGAGCT 58.229 40.909 0.00 0.00 37.69 4.09
2445 2656 5.324409 AGAAACCATCACATTTGGAGCTTA 58.676 37.500 0.00 0.00 37.69 3.09
2447 2658 5.841957 AACCATCACATTTGGAGCTTATC 57.158 39.130 0.00 0.00 37.69 1.75
2448 2659 5.121380 ACCATCACATTTGGAGCTTATCT 57.879 39.130 0.00 0.00 37.69 1.98
2449 2660 5.513233 ACCATCACATTTGGAGCTTATCTT 58.487 37.500 0.00 0.00 37.69 2.40
2451 2662 4.970662 TCACATTTGGAGCTTATCTTGC 57.029 40.909 0.00 0.00 0.00 4.01
2452 2663 4.334552 TCACATTTGGAGCTTATCTTGCA 58.665 39.130 0.00 0.00 0.00 4.08
2453 2664 4.397103 TCACATTTGGAGCTTATCTTGCAG 59.603 41.667 0.00 0.00 0.00 4.41
2454 2665 4.397103 CACATTTGGAGCTTATCTTGCAGA 59.603 41.667 0.00 0.00 0.00 4.26
2455 2666 5.012239 ACATTTGGAGCTTATCTTGCAGAA 58.988 37.500 0.00 0.00 0.00 3.02
2456 2667 5.477984 ACATTTGGAGCTTATCTTGCAGAAA 59.522 36.000 0.00 0.00 0.00 2.52
2457 2668 6.015180 ACATTTGGAGCTTATCTTGCAGAAAA 60.015 34.615 0.00 0.00 0.00 2.29
2458 2669 5.376854 TTGGAGCTTATCTTGCAGAAAAC 57.623 39.130 0.00 0.00 0.00 2.43
2459 2670 4.397420 TGGAGCTTATCTTGCAGAAAACA 58.603 39.130 0.00 0.00 0.00 2.83
2461 2672 5.157067 GGAGCTTATCTTGCAGAAAACAAC 58.843 41.667 0.00 0.00 0.00 3.32
2463 2674 6.396829 AGCTTATCTTGCAGAAAACAACTT 57.603 33.333 0.00 0.00 0.00 2.66
2465 2676 5.340667 GCTTATCTTGCAGAAAACAACTTCG 59.659 40.000 0.00 0.00 0.00 3.79
2466 2677 4.900635 ATCTTGCAGAAAACAACTTCGT 57.099 36.364 0.00 0.00 0.00 3.85
2468 2679 5.054390 TCTTGCAGAAAACAACTTCGTTT 57.946 34.783 0.00 0.00 40.79 3.60
2470 2681 5.923684 TCTTGCAGAAAACAACTTCGTTTTT 59.076 32.000 3.55 0.00 46.39 1.94
2491 2702 4.344359 TTTCCAAATTGGCCAAGTTACC 57.656 40.909 29.07 0.00 37.47 2.85
2495 2706 3.008923 CCAAATTGGCCAAGTTACCCATT 59.991 43.478 29.07 10.74 0.00 3.16
2496 2707 3.979101 AATTGGCCAAGTTACCCATTG 57.021 42.857 24.94 0.00 0.00 2.82
2498 2709 0.178950 TGGCCAAGTTACCCATTGCA 60.179 50.000 0.61 0.00 0.00 4.08
2500 2711 2.291865 TGGCCAAGTTACCCATTGCATA 60.292 45.455 0.61 0.00 0.00 3.14
2503 2714 4.370917 GCCAAGTTACCCATTGCATATTG 58.629 43.478 0.00 0.00 0.00 1.90
2504 2715 4.740334 GCCAAGTTACCCATTGCATATTGG 60.740 45.833 4.31 4.31 38.13 3.16
2505 2716 4.370917 CAAGTTACCCATTGCATATTGGC 58.629 43.478 5.53 0.00 0.00 4.52
2506 2717 2.622942 AGTTACCCATTGCATATTGGCG 59.377 45.455 5.53 2.87 36.28 5.69
2511 2722 0.661187 CATTGCATATTGGCGGTCGC 60.661 55.000 6.83 6.83 41.06 5.19
2512 2723 0.819259 ATTGCATATTGGCGGTCGCT 60.819 50.000 15.04 0.00 41.60 4.93
2513 2724 0.179070 TTGCATATTGGCGGTCGCTA 60.179 50.000 15.04 6.29 41.60 4.26
2514 2725 0.179070 TGCATATTGGCGGTCGCTAA 60.179 50.000 15.70 15.70 45.14 3.09
2516 2727 1.128692 GCATATTGGCGGTCGCTAATC 59.871 52.381 25.38 11.63 46.79 1.75
2518 2729 2.831685 TATTGGCGGTCGCTAATCAT 57.168 45.000 25.38 10.01 46.79 2.45
2519 2730 1.967319 ATTGGCGGTCGCTAATCATT 58.033 45.000 18.56 0.93 46.79 2.57
2520 2731 1.745232 TTGGCGGTCGCTAATCATTT 58.255 45.000 15.04 0.00 41.60 2.32
2521 2732 1.013596 TGGCGGTCGCTAATCATTTG 58.986 50.000 15.04 0.00 41.60 2.32
2522 2733 0.317020 GGCGGTCGCTAATCATTTGC 60.317 55.000 15.04 0.00 41.60 3.68
2523 2734 0.376852 GCGGTCGCTAATCATTTGCA 59.623 50.000 8.20 0.00 38.26 4.08
2524 2735 1.202132 GCGGTCGCTAATCATTTGCAA 60.202 47.619 8.20 0.00 38.26 4.08
2525 2736 2.730715 GCGGTCGCTAATCATTTGCAAA 60.731 45.455 15.44 15.44 38.26 3.68
2526 2737 3.497118 CGGTCGCTAATCATTTGCAAAA 58.503 40.909 17.19 0.11 0.00 2.44
2528 2739 4.204978 CGGTCGCTAATCATTTGCAAAATC 59.795 41.667 17.19 0.00 0.00 2.17
2529 2740 4.504097 GGTCGCTAATCATTTGCAAAATCC 59.496 41.667 17.19 0.00 0.00 3.01
2530 2741 5.101628 GTCGCTAATCATTTGCAAAATCCA 58.898 37.500 17.19 0.51 0.00 3.41
2531 2742 5.004726 GTCGCTAATCATTTGCAAAATCCAC 59.995 40.000 17.19 2.25 0.00 4.02
2532 2743 4.268405 CGCTAATCATTTGCAAAATCCACC 59.732 41.667 17.19 1.84 0.00 4.61
2533 2744 4.268405 GCTAATCATTTGCAAAATCCACCG 59.732 41.667 17.19 3.87 0.00 4.94
2534 2745 2.077413 TCATTTGCAAAATCCACCGC 57.923 45.000 17.19 0.00 0.00 5.68
2535 2746 0.714994 CATTTGCAAAATCCACCGCG 59.285 50.000 17.19 0.00 0.00 6.46
2536 2747 0.389687 ATTTGCAAAATCCACCGCGG 60.390 50.000 26.86 26.86 0.00 6.46
2546 2757 0.828022 TCCACCGCGGATTCAGTAAT 59.172 50.000 35.90 1.64 39.64 1.89
2547 2758 2.033372 TCCACCGCGGATTCAGTAATA 58.967 47.619 35.90 1.41 39.64 0.98
2548 2759 2.035449 TCCACCGCGGATTCAGTAATAG 59.965 50.000 35.90 0.00 39.64 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.075050 TCCCTCCGTTCAGTACAGACT 59.925 52.381 0.00 0.00 35.80 3.24
36 37 1.473278 CTCCCTCCGTTCAGTACAGAC 59.527 57.143 0.00 0.00 0.00 3.51
37 38 1.075050 ACTCCCTCCGTTCAGTACAGA 59.925 52.381 0.00 0.00 0.00 3.41
38 39 1.202582 CACTCCCTCCGTTCAGTACAG 59.797 57.143 0.00 0.00 0.00 2.74
39 40 1.254026 CACTCCCTCCGTTCAGTACA 58.746 55.000 0.00 0.00 0.00 2.90
40 41 0.108756 GCACTCCCTCCGTTCAGTAC 60.109 60.000 0.00 0.00 0.00 2.73
41 42 0.541063 TGCACTCCCTCCGTTCAGTA 60.541 55.000 0.00 0.00 0.00 2.74
42 43 1.407656 TTGCACTCCCTCCGTTCAGT 61.408 55.000 0.00 0.00 0.00 3.41
43 44 0.250295 TTTGCACTCCCTCCGTTCAG 60.250 55.000 0.00 0.00 0.00 3.02
47 48 2.871096 TTAATTTGCACTCCCTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
68 69 4.514816 TGCGTACATATTTGTAGCATGCAT 59.485 37.500 21.98 6.58 38.98 3.96
70 71 4.211389 GTGCGTACATATTTGTAGCATGC 58.789 43.478 10.51 10.51 40.84 4.06
95 103 6.265422 CCTTTTGAGGGAATCACAGTAAAAGT 59.735 38.462 13.62 0.00 37.77 2.66
120 128 5.009610 TCCTTGTTTCACAATACAAAGCTCC 59.990 40.000 0.00 0.00 37.48 4.70
153 164 3.621715 ACTTGGAAGTTGAAACAGACGTC 59.378 43.478 7.70 7.70 35.21 4.34
181 192 3.475566 TTTGCTTGCTCAGTCAGTAGT 57.524 42.857 0.00 0.00 0.00 2.73
202 213 5.471556 TGAATCAATGCATGTGGTTTCTT 57.528 34.783 0.00 0.00 0.00 2.52
203 214 5.221481 TGTTGAATCAATGCATGTGGTTTCT 60.221 36.000 0.00 0.00 0.00 2.52
237 248 3.246226 CCTCAACTGACAGTTTTGACTCG 59.754 47.826 18.27 5.74 36.03 4.18
261 272 4.012319 GCTTATGCTCATGTCACAGTTG 57.988 45.455 0.00 0.00 36.03 3.16
398 414 1.338107 TACCAGCAGCAGTGTAGTGT 58.662 50.000 0.00 0.00 0.00 3.55
403 419 2.867109 AGATTTACCAGCAGCAGTGT 57.133 45.000 0.00 0.00 0.00 3.55
439 467 0.813184 AATACCAGCAGTGCATGTGC 59.187 50.000 19.20 14.51 41.54 4.57
440 468 2.229543 ACAAATACCAGCAGTGCATGTG 59.770 45.455 19.20 9.70 0.00 3.21
441 469 2.517959 ACAAATACCAGCAGTGCATGT 58.482 42.857 19.20 15.71 0.00 3.21
495 523 2.482336 TGCTGCGTGTAACTTTGTATGG 59.518 45.455 0.00 0.00 31.75 2.74
529 565 3.187842 GGTGTTCTACGGTGAATCCAAAC 59.812 47.826 0.00 0.00 35.57 2.93
532 568 1.972075 TGGTGTTCTACGGTGAATCCA 59.028 47.619 11.80 11.80 33.79 3.41
537 573 0.746063 ACGTTGGTGTTCTACGGTGA 59.254 50.000 0.00 0.00 39.45 4.02
541 577 2.582687 GAGAGACGTTGGTGTTCTACG 58.417 52.381 0.00 0.00 40.85 3.51
856 892 3.157087 AGTTTGCCACTATGGGTTTCAG 58.843 45.455 0.00 0.00 38.19 3.02
872 908 1.526887 CTACCGCGGATGCATAGTTTG 59.473 52.381 35.90 2.44 42.97 2.93
898 939 2.356313 CAGAGCGGCGTGAACTGT 60.356 61.111 9.37 0.00 0.00 3.55
909 950 1.068885 CGGATAGGTAAGAGCAGAGCG 60.069 57.143 0.00 0.00 0.00 5.03
1155 1253 3.650409 GATGAGGTGCGTCGAGATT 57.350 52.632 0.00 0.00 0.00 2.40
1246 1344 4.862902 TGAGTTGGAGAGTGAGAAAGAG 57.137 45.455 0.00 0.00 0.00 2.85
1247 1345 4.082517 CGATGAGTTGGAGAGTGAGAAAGA 60.083 45.833 0.00 0.00 0.00 2.52
1248 1346 4.172505 CGATGAGTTGGAGAGTGAGAAAG 58.827 47.826 0.00 0.00 0.00 2.62
1249 1347 3.574396 ACGATGAGTTGGAGAGTGAGAAA 59.426 43.478 0.00 0.00 0.00 2.52
1250 1348 3.157881 ACGATGAGTTGGAGAGTGAGAA 58.842 45.455 0.00 0.00 0.00 2.87
1251 1349 2.750166 GACGATGAGTTGGAGAGTGAGA 59.250 50.000 0.00 0.00 0.00 3.27
1252 1350 2.489722 TGACGATGAGTTGGAGAGTGAG 59.510 50.000 0.00 0.00 0.00 3.51
1253 1351 2.229062 GTGACGATGAGTTGGAGAGTGA 59.771 50.000 0.00 0.00 0.00 3.41
1301 1442 2.425312 TCAAGCAAATTGAACCACACGT 59.575 40.909 0.00 0.00 45.00 4.49
1361 1503 3.255395 TGGCGAAAATGATGCTGAAGAAA 59.745 39.130 0.00 0.00 0.00 2.52
1415 1560 3.157252 GAGGCCTGCGGATCTCCA 61.157 66.667 12.00 0.00 35.14 3.86
1459 1605 1.627834 CAAGGGATGAGATAGGGAGGC 59.372 57.143 0.00 0.00 0.00 4.70
1476 1622 3.309682 TGCGTTCTGAACTCTGAAACAAG 59.690 43.478 17.60 0.48 35.96 3.16
1487 1633 3.884169 TGCTTACAATTGCGTTCTGAAC 58.116 40.909 10.48 10.48 0.00 3.18
1500 1646 4.344102 AGGTCAGTACTCAGTTGCTTACAA 59.656 41.667 0.00 0.00 0.00 2.41
1508 1654 3.714144 AGGCATAGGTCAGTACTCAGTT 58.286 45.455 0.00 0.00 0.00 3.16
1509 1655 3.390175 AGGCATAGGTCAGTACTCAGT 57.610 47.619 0.00 0.00 0.00 3.41
1510 1656 6.183360 ACAATTAGGCATAGGTCAGTACTCAG 60.183 42.308 0.00 0.00 0.00 3.35
1511 1657 5.661312 ACAATTAGGCATAGGTCAGTACTCA 59.339 40.000 0.00 0.00 0.00 3.41
1512 1658 6.163135 ACAATTAGGCATAGGTCAGTACTC 57.837 41.667 0.00 0.00 0.00 2.59
1513 1659 6.561519 AACAATTAGGCATAGGTCAGTACT 57.438 37.500 0.00 0.00 0.00 2.73
1514 1660 7.048512 AGAAACAATTAGGCATAGGTCAGTAC 58.951 38.462 0.00 0.00 0.00 2.73
1524 1684 4.338879 ACAGCTGAGAAACAATTAGGCAT 58.661 39.130 23.35 0.00 0.00 4.40
1588 1752 2.601367 GCAACCACCACTGGGCAT 60.601 61.111 0.00 0.00 42.74 4.40
1589 1753 3.449494 ATGCAACCACCACTGGGCA 62.449 57.895 0.00 0.00 42.74 5.36
1590 1754 2.601367 ATGCAACCACCACTGGGC 60.601 61.111 0.00 0.00 42.74 5.36
1591 1755 2.934570 GCATGCAACCACCACTGGG 61.935 63.158 14.21 0.00 42.74 4.45
1592 1756 1.870055 GAGCATGCAACCACCACTGG 61.870 60.000 21.98 0.00 44.26 4.00
1593 1757 1.174078 TGAGCATGCAACCACCACTG 61.174 55.000 21.98 0.00 0.00 3.66
1594 1758 0.892358 CTGAGCATGCAACCACCACT 60.892 55.000 21.98 0.00 0.00 4.00
1595 1759 1.174712 ACTGAGCATGCAACCACCAC 61.175 55.000 21.98 1.30 0.00 4.16
1596 1760 1.151221 ACTGAGCATGCAACCACCA 59.849 52.632 21.98 6.60 0.00 4.17
1597 1761 1.582968 CACTGAGCATGCAACCACC 59.417 57.895 21.98 2.04 0.00 4.61
1598 1762 1.174712 ACCACTGAGCATGCAACCAC 61.175 55.000 21.98 6.21 0.00 4.16
1599 1763 1.151221 ACCACTGAGCATGCAACCA 59.849 52.632 21.98 13.34 0.00 3.67
1600 1764 1.582968 CACCACTGAGCATGCAACC 59.417 57.895 21.98 9.11 0.00 3.77
1601 1765 1.174712 ACCACCACTGAGCATGCAAC 61.175 55.000 21.98 13.92 0.00 4.17
1602 1766 0.467844 AACCACCACTGAGCATGCAA 60.468 50.000 21.98 6.70 0.00 4.08
1603 1767 1.151221 AACCACCACTGAGCATGCA 59.849 52.632 21.98 0.00 0.00 3.96
1604 1768 1.582968 CAACCACCACTGAGCATGC 59.417 57.895 10.51 10.51 0.00 4.06
1605 1769 1.174078 TGCAACCACCACTGAGCATG 61.174 55.000 0.00 0.00 0.00 4.06
1629 1793 3.452264 CCATCACCAATCTCCACTGACTA 59.548 47.826 0.00 0.00 0.00 2.59
1728 1916 4.138487 CCTAAATAGGCCACCGGATATC 57.862 50.000 9.46 0.00 36.53 1.63
1805 1996 6.598753 TTAATCTGTCAATACTAAAGCGCC 57.401 37.500 2.29 0.00 0.00 6.53
1819 2026 5.062809 GCGGCTATGCTCTATTTAATCTGTC 59.937 44.000 0.00 0.00 0.00 3.51
1854 2061 5.640147 TGTGTCCTTCCCATTTGTATTTCT 58.360 37.500 0.00 0.00 0.00 2.52
1855 2062 5.975693 TGTGTCCTTCCCATTTGTATTTC 57.024 39.130 0.00 0.00 0.00 2.17
1863 2070 3.317993 CGTTCTTTTGTGTCCTTCCCATT 59.682 43.478 0.00 0.00 0.00 3.16
1874 2081 7.218204 CCTCTTTGTTTCTTACGTTCTTTTGTG 59.782 37.037 0.00 0.00 0.00 3.33
1876 2083 6.691388 CCCTCTTTGTTTCTTACGTTCTTTTG 59.309 38.462 0.00 0.00 0.00 2.44
1881 2088 6.647895 TGTATCCCTCTTTGTTTCTTACGTTC 59.352 38.462 0.00 0.00 0.00 3.95
1884 2091 6.402226 GCTTGTATCCCTCTTTGTTTCTTACG 60.402 42.308 0.00 0.00 0.00 3.18
1909 2116 4.569761 TTCTATCTCAATCGGTTCCTCG 57.430 45.455 0.00 0.00 0.00 4.63
1917 2124 5.368145 TCCCCATGTTTTCTATCTCAATCG 58.632 41.667 0.00 0.00 0.00 3.34
1935 2142 6.013379 TCAAACAAAAGCTAATGTATCCCCA 58.987 36.000 4.88 0.00 0.00 4.96
1970 2177 2.159043 CGATGCAGAGGCCGGATAATAT 60.159 50.000 5.05 0.00 40.13 1.28
1971 2178 1.204704 CGATGCAGAGGCCGGATAATA 59.795 52.381 5.05 0.00 40.13 0.98
1972 2179 0.036952 CGATGCAGAGGCCGGATAAT 60.037 55.000 5.05 0.00 40.13 1.28
1973 2180 1.112916 TCGATGCAGAGGCCGGATAA 61.113 55.000 5.05 0.00 40.13 1.75
1974 2181 0.900182 ATCGATGCAGAGGCCGGATA 60.900 55.000 5.05 0.00 40.13 2.59
1975 2182 2.212811 ATCGATGCAGAGGCCGGAT 61.213 57.895 5.05 0.00 40.13 4.18
1976 2183 2.839632 ATCGATGCAGAGGCCGGA 60.840 61.111 5.05 0.00 40.13 5.14
1977 2184 2.664185 CATCGATGCAGAGGCCGG 60.664 66.667 13.37 0.00 40.13 6.13
1987 2194 2.925578 AATGGTTGTGTGCATCGATG 57.074 45.000 21.27 21.27 0.00 3.84
1988 2195 3.940209 AAAATGGTTGTGTGCATCGAT 57.060 38.095 0.00 0.00 0.00 3.59
1989 2196 5.384063 AATAAAATGGTTGTGTGCATCGA 57.616 34.783 0.00 0.00 0.00 3.59
1990 2197 7.115520 TGTTTAATAAAATGGTTGTGTGCATCG 59.884 33.333 0.00 0.00 0.00 3.84
1991 2198 8.304202 TGTTTAATAAAATGGTTGTGTGCATC 57.696 30.769 0.00 0.00 0.00 3.91
1992 2199 8.668510 TTGTTTAATAAAATGGTTGTGTGCAT 57.331 26.923 0.00 0.00 0.00 3.96
1993 2200 8.492673 TTTGTTTAATAAAATGGTTGTGTGCA 57.507 26.923 0.00 0.00 0.00 4.57
1994 2201 8.608317 ACTTTGTTTAATAAAATGGTTGTGTGC 58.392 29.630 0.00 0.00 0.00 4.57
2000 2207 9.483916 GGTGCTACTTTGTTTAATAAAATGGTT 57.516 29.630 0.00 0.00 0.00 3.67
2001 2208 8.643324 TGGTGCTACTTTGTTTAATAAAATGGT 58.357 29.630 0.00 0.00 0.00 3.55
2002 2209 9.482627 TTGGTGCTACTTTGTTTAATAAAATGG 57.517 29.630 0.00 0.00 0.00 3.16
2004 2211 9.187455 CGTTGGTGCTACTTTGTTTAATAAAAT 57.813 29.630 0.00 0.00 0.00 1.82
2005 2212 8.189460 ACGTTGGTGCTACTTTGTTTAATAAAA 58.811 29.630 0.00 0.00 0.00 1.52
2012 2219 3.940221 TGTACGTTGGTGCTACTTTGTTT 59.060 39.130 0.00 0.00 0.00 2.83
2029 2236 8.683550 TGAGAACTTGTATTGAACTATGTACG 57.316 34.615 0.00 0.00 0.00 3.67
2034 2241 8.621532 TTGCTTGAGAACTTGTATTGAACTAT 57.378 30.769 0.00 0.00 0.00 2.12
2044 2251 5.643379 TTCAGTTTTGCTTGAGAACTTGT 57.357 34.783 0.00 0.00 31.63 3.16
2086 2297 8.335356 TCATTTAGTCATATTTTCGCTAGTTGC 58.665 33.333 0.00 0.00 38.57 4.17
2100 2311 7.822334 CAGTGGGTGTTTAGTCATTTAGTCATA 59.178 37.037 0.00 0.00 0.00 2.15
2102 2313 5.995282 CAGTGGGTGTTTAGTCATTTAGTCA 59.005 40.000 0.00 0.00 0.00 3.41
2108 2319 4.431416 TGACAGTGGGTGTTTAGTCATT 57.569 40.909 0.00 0.00 40.56 2.57
2111 2322 5.995897 AGTAAATGACAGTGGGTGTTTAGTC 59.004 40.000 0.00 0.00 40.56 2.59
2114 2325 5.310451 GGAGTAAATGACAGTGGGTGTTTA 58.690 41.667 0.00 0.00 40.56 2.01
2116 2327 3.497942 GGGAGTAAATGACAGTGGGTGTT 60.498 47.826 0.00 0.00 40.56 3.32
2118 2329 2.305927 AGGGAGTAAATGACAGTGGGTG 59.694 50.000 0.00 0.00 0.00 4.61
2121 2332 3.261897 ACAGAGGGAGTAAATGACAGTGG 59.738 47.826 0.00 0.00 0.00 4.00
2123 2334 4.020128 GGAACAGAGGGAGTAAATGACAGT 60.020 45.833 0.00 0.00 0.00 3.55
2124 2335 4.223923 AGGAACAGAGGGAGTAAATGACAG 59.776 45.833 0.00 0.00 0.00 3.51
2125 2336 4.168101 AGGAACAGAGGGAGTAAATGACA 58.832 43.478 0.00 0.00 0.00 3.58
2126 2337 4.828072 AGGAACAGAGGGAGTAAATGAC 57.172 45.455 0.00 0.00 0.00 3.06
2127 2338 6.945636 TTTAGGAACAGAGGGAGTAAATGA 57.054 37.500 0.00 0.00 0.00 2.57
2128 2339 9.853177 AATATTTAGGAACAGAGGGAGTAAATG 57.147 33.333 0.00 0.00 0.00 2.32
2130 2341 9.681062 CAAATATTTAGGAACAGAGGGAGTAAA 57.319 33.333 0.00 0.00 0.00 2.01
2133 2344 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
2134 2345 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
2136 2347 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
2137 2348 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
2168 2379 9.319143 GCTCTGTATGTAGTCACTTATTGAAAT 57.681 33.333 0.00 0.00 35.39 2.17
2169 2380 8.311109 TGCTCTGTATGTAGTCACTTATTGAAA 58.689 33.333 0.00 0.00 35.39 2.69
2170 2381 7.836842 TGCTCTGTATGTAGTCACTTATTGAA 58.163 34.615 0.00 0.00 35.39 2.69
2171 2382 7.404671 TGCTCTGTATGTAGTCACTTATTGA 57.595 36.000 0.00 0.00 0.00 2.57
2172 2383 8.479313 TTTGCTCTGTATGTAGTCACTTATTG 57.521 34.615 0.00 0.00 0.00 1.90
2173 2384 9.672673 ATTTTGCTCTGTATGTAGTCACTTATT 57.327 29.630 0.00 0.00 0.00 1.40
2174 2385 9.102757 CATTTTGCTCTGTATGTAGTCACTTAT 57.897 33.333 0.00 0.00 0.00 1.73
2175 2386 8.311109 TCATTTTGCTCTGTATGTAGTCACTTA 58.689 33.333 0.00 0.00 0.00 2.24
2176 2387 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
2177 2388 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
2178 2389 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
2179 2390 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
2180 2391 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2181 2392 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
2182 2393 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2183 2394 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2184 2395 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2185 2396 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2186 2397 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2187 2398 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2188 2399 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2189 2400 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2190 2401 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2191 2402 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2192 2403 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
2193 2404 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2219 2430 9.653287 CCACATACGGATGTATTTAGACATATT 57.347 33.333 14.23 0.00 44.82 1.28
2220 2431 8.812972 ACCACATACGGATGTATTTAGACATAT 58.187 33.333 14.23 0.00 44.82 1.78
2221 2432 8.185506 ACCACATACGGATGTATTTAGACATA 57.814 34.615 14.23 0.00 44.82 2.29
2222 2433 7.062749 ACCACATACGGATGTATTTAGACAT 57.937 36.000 14.23 0.00 44.82 3.06
2223 2434 6.474140 ACCACATACGGATGTATTTAGACA 57.526 37.500 14.23 0.00 44.82 3.41
2224 2435 7.655490 ACTACCACATACGGATGTATTTAGAC 58.345 38.462 14.23 0.00 44.82 2.59
2225 2436 7.040201 GGACTACCACATACGGATGTATTTAGA 60.040 40.741 14.23 0.00 44.82 2.10
2226 2437 7.088905 GGACTACCACATACGGATGTATTTAG 58.911 42.308 14.23 15.31 44.82 1.85
2227 2438 6.550481 TGGACTACCACATACGGATGTATTTA 59.450 38.462 14.23 4.09 44.82 1.40
2228 2439 5.364446 TGGACTACCACATACGGATGTATTT 59.636 40.000 14.23 3.01 44.82 1.40
2229 2440 4.897076 TGGACTACCACATACGGATGTATT 59.103 41.667 14.23 5.72 44.82 1.89
2230 2441 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2231 2442 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2244 2455 9.020731 TCTTTTTAGGATTTCAAATGGACTACC 57.979 33.333 0.00 0.00 0.00 3.18
2245 2456 9.841880 GTCTTTTTAGGATTTCAAATGGACTAC 57.158 33.333 0.00 0.00 0.00 2.73
2246 2457 9.581289 TGTCTTTTTAGGATTTCAAATGGACTA 57.419 29.630 0.00 0.00 0.00 2.59
2247 2458 8.477419 TGTCTTTTTAGGATTTCAAATGGACT 57.523 30.769 0.00 0.00 0.00 3.85
2248 2459 9.541143 TTTGTCTTTTTAGGATTTCAAATGGAC 57.459 29.630 0.00 0.00 0.00 4.02
2261 2472 9.269415 CCGTTCGTAAATATTTGTCTTTTTAGG 57.731 33.333 11.05 0.61 0.00 2.69
2264 2475 8.019094 CCTCCGTTCGTAAATATTTGTCTTTTT 58.981 33.333 11.05 0.00 0.00 1.94
2265 2476 7.361457 CCCTCCGTTCGTAAATATTTGTCTTTT 60.361 37.037 11.05 0.00 0.00 2.27
2266 2477 6.093082 CCCTCCGTTCGTAAATATTTGTCTTT 59.907 38.462 11.05 0.00 0.00 2.52
2267 2478 5.583457 CCCTCCGTTCGTAAATATTTGTCTT 59.417 40.000 11.05 0.00 0.00 3.01
2268 2479 5.105228 TCCCTCCGTTCGTAAATATTTGTCT 60.105 40.000 11.05 0.00 0.00 3.41
2269 2480 5.111293 TCCCTCCGTTCGTAAATATTTGTC 58.889 41.667 11.05 3.49 0.00 3.18
2270 2481 5.088680 TCCCTCCGTTCGTAAATATTTGT 57.911 39.130 11.05 0.00 0.00 2.83
2271 2482 5.114081 ACTCCCTCCGTTCGTAAATATTTG 58.886 41.667 11.05 0.00 0.00 2.32
2272 2483 5.349061 ACTCCCTCCGTTCGTAAATATTT 57.651 39.130 5.89 5.89 0.00 1.40
2273 2484 6.469782 TTACTCCCTCCGTTCGTAAATATT 57.530 37.500 0.00 0.00 0.00 1.28
2274 2485 6.469782 TTTACTCCCTCCGTTCGTAAATAT 57.530 37.500 0.00 0.00 0.00 1.28
2275 2486 5.913137 TTTACTCCCTCCGTTCGTAAATA 57.087 39.130 0.00 0.00 0.00 1.40
2276 2487 4.806640 TTTACTCCCTCCGTTCGTAAAT 57.193 40.909 0.00 0.00 0.00 1.40
2277 2488 4.675146 CGATTTACTCCCTCCGTTCGTAAA 60.675 45.833 0.00 0.00 35.37 2.01
2278 2489 3.181497 CGATTTACTCCCTCCGTTCGTAA 60.181 47.826 0.00 0.00 0.00 3.18
2279 2490 2.355756 CGATTTACTCCCTCCGTTCGTA 59.644 50.000 0.00 0.00 0.00 3.43
2280 2491 1.133790 CGATTTACTCCCTCCGTTCGT 59.866 52.381 0.00 0.00 0.00 3.85
2281 2492 1.535437 CCGATTTACTCCCTCCGTTCG 60.535 57.143 0.00 0.00 0.00 3.95
2282 2493 1.479730 ACCGATTTACTCCCTCCGTTC 59.520 52.381 0.00 0.00 0.00 3.95
2283 2494 1.565067 ACCGATTTACTCCCTCCGTT 58.435 50.000 0.00 0.00 0.00 4.44
2284 2495 1.206371 CAACCGATTTACTCCCTCCGT 59.794 52.381 0.00 0.00 0.00 4.69
2285 2496 1.206371 ACAACCGATTTACTCCCTCCG 59.794 52.381 0.00 0.00 0.00 4.63
2286 2497 2.235402 TCACAACCGATTTACTCCCTCC 59.765 50.000 0.00 0.00 0.00 4.30
2287 2498 3.056035 ACTCACAACCGATTTACTCCCTC 60.056 47.826 0.00 0.00 0.00 4.30
2288 2499 2.904434 ACTCACAACCGATTTACTCCCT 59.096 45.455 0.00 0.00 0.00 4.20
2289 2500 3.329929 ACTCACAACCGATTTACTCCC 57.670 47.619 0.00 0.00 0.00 4.30
2290 2501 5.048507 GGATACTCACAACCGATTTACTCC 58.951 45.833 0.00 0.00 0.00 3.85
2291 2502 5.048507 GGGATACTCACAACCGATTTACTC 58.951 45.833 0.00 0.00 0.00 2.59
2292 2503 4.468510 TGGGATACTCACAACCGATTTACT 59.531 41.667 0.00 0.00 0.00 2.24
2293 2504 4.761975 TGGGATACTCACAACCGATTTAC 58.238 43.478 0.00 0.00 0.00 2.01
2294 2505 5.364778 CATGGGATACTCACAACCGATTTA 58.635 41.667 0.00 0.00 31.08 1.40
2295 2506 3.992943 TGGGATACTCACAACCGATTT 57.007 42.857 0.00 0.00 0.00 2.17
2296 2507 3.808728 CATGGGATACTCACAACCGATT 58.191 45.455 0.00 0.00 31.08 3.34
2297 2508 2.485479 GCATGGGATACTCACAACCGAT 60.485 50.000 0.00 0.00 31.08 4.18
2298 2509 1.134521 GCATGGGATACTCACAACCGA 60.135 52.381 0.00 0.00 31.08 4.69
2299 2510 1.134401 AGCATGGGATACTCACAACCG 60.134 52.381 0.00 0.00 31.08 4.44
2300 2511 2.717639 AGCATGGGATACTCACAACC 57.282 50.000 0.00 0.00 31.08 3.77
2301 2512 3.467803 GGTAGCATGGGATACTCACAAC 58.532 50.000 0.00 0.00 31.08 3.32
2306 2517 2.829120 GAGAGGGTAGCATGGGATACTC 59.171 54.545 0.00 0.00 36.62 2.59
2315 2526 1.115467 CCGTTGAGAGAGGGTAGCAT 58.885 55.000 0.00 0.00 0.00 3.79
2343 2554 6.652481 CGAAAATCAGGAAGCATATGGTCTAT 59.348 38.462 8.07 0.00 0.00 1.98
2346 2557 4.555511 GCGAAAATCAGGAAGCATATGGTC 60.556 45.833 8.07 2.13 0.00 4.02
2347 2558 3.316308 GCGAAAATCAGGAAGCATATGGT 59.684 43.478 0.40 0.40 0.00 3.55
2357 2568 1.097232 CAGCCATGCGAAAATCAGGA 58.903 50.000 0.00 0.00 0.00 3.86
2361 2572 4.671377 TGTTATTCAGCCATGCGAAAATC 58.329 39.130 0.00 0.00 0.00 2.17
2363 2574 4.233789 GTTGTTATTCAGCCATGCGAAAA 58.766 39.130 0.00 0.00 0.00 2.29
2366 2577 1.742831 GGTTGTTATTCAGCCATGCGA 59.257 47.619 0.00 0.00 45.05 5.10
2367 2578 2.193306 GGTTGTTATTCAGCCATGCG 57.807 50.000 0.00 0.00 45.05 4.73
2374 2585 3.577667 TCCGTACGTGGTTGTTATTCAG 58.422 45.455 15.21 0.00 0.00 3.02
2378 2589 6.624423 GGATATATCCGTACGTGGTTGTTAT 58.376 40.000 16.01 6.01 37.19 1.89
2396 2607 5.407502 CAATTCACTCGGCGTATGGATATA 58.592 41.667 6.85 0.00 0.00 0.86
2397 2608 4.245660 CAATTCACTCGGCGTATGGATAT 58.754 43.478 6.85 0.00 0.00 1.63
2398 2609 3.649073 CAATTCACTCGGCGTATGGATA 58.351 45.455 6.85 0.00 0.00 2.59
2401 2612 0.304705 GCAATTCACTCGGCGTATGG 59.695 55.000 6.85 0.00 0.00 2.74
2404 2615 1.075542 CTTGCAATTCACTCGGCGTA 58.924 50.000 6.85 0.00 0.00 4.42
2406 2617 0.516877 TTCTTGCAATTCACTCGGCG 59.483 50.000 0.00 0.00 0.00 6.46
2410 2621 4.919754 GTGATGGTTTCTTGCAATTCACTC 59.080 41.667 0.00 0.00 31.78 3.51
2411 2622 4.341806 TGTGATGGTTTCTTGCAATTCACT 59.658 37.500 0.00 0.00 34.72 3.41
2412 2623 4.619973 TGTGATGGTTTCTTGCAATTCAC 58.380 39.130 0.00 5.93 34.33 3.18
2413 2624 4.933505 TGTGATGGTTTCTTGCAATTCA 57.066 36.364 0.00 0.00 0.00 2.57
2414 2625 6.347888 CCAAATGTGATGGTTTCTTGCAATTC 60.348 38.462 0.00 0.00 33.08 2.17
2415 2626 5.470777 CCAAATGTGATGGTTTCTTGCAATT 59.529 36.000 0.00 0.00 33.08 2.32
2418 2629 3.640498 TCCAAATGTGATGGTTTCTTGCA 59.360 39.130 0.00 0.00 39.09 4.08
2419 2630 4.240096 CTCCAAATGTGATGGTTTCTTGC 58.760 43.478 0.00 0.00 39.09 4.01
2421 2632 4.154942 AGCTCCAAATGTGATGGTTTCTT 58.845 39.130 0.00 0.00 39.09 2.52
2422 2633 3.771216 AGCTCCAAATGTGATGGTTTCT 58.229 40.909 0.00 0.00 39.09 2.52
2423 2634 4.525912 AAGCTCCAAATGTGATGGTTTC 57.474 40.909 0.00 0.00 39.09 2.78
2424 2635 5.954150 AGATAAGCTCCAAATGTGATGGTTT 59.046 36.000 0.00 0.00 39.09 3.27
2425 2636 5.513233 AGATAAGCTCCAAATGTGATGGTT 58.487 37.500 0.00 0.00 39.09 3.67
2428 2639 5.163591 TGCAAGATAAGCTCCAAATGTGATG 60.164 40.000 0.00 0.00 0.00 3.07
2429 2640 4.951715 TGCAAGATAAGCTCCAAATGTGAT 59.048 37.500 0.00 0.00 0.00 3.06
2431 2642 4.397103 TCTGCAAGATAAGCTCCAAATGTG 59.603 41.667 0.00 0.00 38.67 3.21
2432 2643 4.592942 TCTGCAAGATAAGCTCCAAATGT 58.407 39.130 0.00 0.00 38.67 2.71
2434 2645 6.015180 TGTTTTCTGCAAGATAAGCTCCAAAT 60.015 34.615 0.00 0.00 46.36 2.32
2435 2646 5.301551 TGTTTTCTGCAAGATAAGCTCCAAA 59.698 36.000 0.00 0.00 46.36 3.28
2436 2647 4.826733 TGTTTTCTGCAAGATAAGCTCCAA 59.173 37.500 0.00 0.00 46.36 3.53
2438 2649 5.048434 AGTTGTTTTCTGCAAGATAAGCTCC 60.048 40.000 0.00 0.00 46.36 4.70
2439 2650 6.006759 AGTTGTTTTCTGCAAGATAAGCTC 57.993 37.500 0.00 0.00 46.36 4.09
2440 2651 6.396829 AAGTTGTTTTCTGCAAGATAAGCT 57.603 33.333 0.00 0.00 46.36 3.74
2443 2654 6.371809 ACGAAGTTGTTTTCTGCAAGATAA 57.628 33.333 0.00 0.00 40.94 1.75
2445 2656 4.900635 ACGAAGTTGTTTTCTGCAAGAT 57.099 36.364 0.00 0.00 40.94 2.40
2468 2679 5.126779 GGTAACTTGGCCAATTTGGAAAAA 58.873 37.500 26.52 6.82 40.96 1.94
2469 2680 4.445019 GGGTAACTTGGCCAATTTGGAAAA 60.445 41.667 26.52 10.68 40.96 2.29
2470 2681 3.071747 GGGTAACTTGGCCAATTTGGAAA 59.928 43.478 26.52 11.02 40.96 3.13
2471 2682 2.635427 GGGTAACTTGGCCAATTTGGAA 59.365 45.455 26.52 8.18 40.96 3.53
2472 2683 2.252714 GGGTAACTTGGCCAATTTGGA 58.747 47.619 26.52 8.85 40.96 3.53
2474 2685 3.979101 ATGGGTAACTTGGCCAATTTG 57.021 42.857 26.52 15.33 0.00 2.32
2477 2688 1.554617 GCAATGGGTAACTTGGCCAAT 59.445 47.619 20.85 7.87 0.00 3.16
2479 2690 0.178950 TGCAATGGGTAACTTGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
2480 2691 1.194218 ATGCAATGGGTAACTTGGCC 58.806 50.000 0.00 0.00 0.00 5.36
2481 2692 4.370917 CAATATGCAATGGGTAACTTGGC 58.629 43.478 0.00 0.00 0.00 4.52
2483 2694 4.370917 GCCAATATGCAATGGGTAACTTG 58.629 43.478 15.75 0.00 37.19 3.16
2484 2695 3.068024 CGCCAATATGCAATGGGTAACTT 59.932 43.478 15.75 0.00 37.19 2.66
2486 2697 2.288152 CCGCCAATATGCAATGGGTAAC 60.288 50.000 15.75 1.75 37.19 2.50
2487 2698 1.959985 CCGCCAATATGCAATGGGTAA 59.040 47.619 15.75 0.00 37.19 2.85
2489 2700 0.396974 ACCGCCAATATGCAATGGGT 60.397 50.000 15.75 5.89 37.19 4.51
2491 2702 0.040157 CGACCGCCAATATGCAATGG 60.040 55.000 11.16 11.16 39.80 3.16
2495 2706 0.179070 TTAGCGACCGCCAATATGCA 60.179 50.000 11.03 0.00 43.17 3.96
2496 2707 1.128692 GATTAGCGACCGCCAATATGC 59.871 52.381 11.03 0.00 43.17 3.14
2498 2709 2.831685 TGATTAGCGACCGCCAATAT 57.168 45.000 11.03 0.00 43.17 1.28
2500 2711 1.967319 AATGATTAGCGACCGCCAAT 58.033 45.000 11.03 9.26 43.17 3.16
2503 2714 0.317020 GCAAATGATTAGCGACCGCC 60.317 55.000 11.03 0.00 43.17 6.13
2504 2715 0.376852 TGCAAATGATTAGCGACCGC 59.623 50.000 6.25 6.25 42.33 5.68
2505 2716 2.823196 TTGCAAATGATTAGCGACCG 57.177 45.000 0.00 0.00 0.00 4.79
2506 2717 4.504097 GGATTTTGCAAATGATTAGCGACC 59.496 41.667 13.65 0.00 0.00 4.79
2511 2722 4.268405 GCGGTGGATTTTGCAAATGATTAG 59.732 41.667 13.65 3.92 0.00 1.73
2512 2723 4.180057 GCGGTGGATTTTGCAAATGATTA 58.820 39.130 13.65 0.00 0.00 1.75
2513 2724 3.002102 GCGGTGGATTTTGCAAATGATT 58.998 40.909 13.65 0.00 0.00 2.57
2514 2725 2.620242 GCGGTGGATTTTGCAAATGAT 58.380 42.857 13.65 4.19 0.00 2.45
2516 2727 0.714994 CGCGGTGGATTTTGCAAATG 59.285 50.000 13.65 0.00 0.00 2.32
2518 2729 1.006805 CCGCGGTGGATTTTGCAAA 60.007 52.632 19.50 8.05 42.00 3.68
2519 2730 1.899054 TCCGCGGTGGATTTTGCAA 60.899 52.632 27.15 0.00 43.74 4.08
2520 2731 2.281831 TCCGCGGTGGATTTTGCA 60.282 55.556 27.15 0.00 43.74 4.08
2528 2739 2.404215 CTATTACTGAATCCGCGGTGG 58.596 52.381 27.15 13.72 40.09 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.