Multiple sequence alignment - TraesCS1B01G078900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G078900 chr1B 100.000 4675 0 0 1 4675 61894584 61899258 0.000000e+00 8634.0
1 TraesCS1B01G078900 chr1A 91.673 4143 200 56 1 4030 41740982 41745092 0.000000e+00 5605.0
2 TraesCS1B01G078900 chr1D 92.931 3183 135 33 942 4059 41718537 41721694 0.000000e+00 4549.0
3 TraesCS1B01G078900 chr1D 88.342 772 37 20 2 745 41717645 41718391 0.000000e+00 878.0
4 TraesCS1B01G078900 chr1D 87.346 324 29 6 4083 4403 41721757 41722071 1.240000e-95 361.0
5 TraesCS1B01G078900 chr1D 90.741 108 7 2 1 108 41694328 41694432 1.750000e-29 141.0
6 TraesCS1B01G078900 chr1D 100.000 44 0 0 4632 4675 41749427 41749470 1.080000e-11 82.4
7 TraesCS1B01G078900 chr2A 88.854 646 33 17 942 1570 698901027 698900404 0.000000e+00 758.0
8 TraesCS1B01G078900 chr2A 85.323 402 27 18 1184 1570 71506838 71506454 2.040000e-103 387.0
9 TraesCS1B01G078900 chr2A 90.455 220 15 5 530 745 71519577 71519360 7.660000e-73 285.0
10 TraesCS1B01G078900 chr2A 88.158 228 21 3 524 745 698901398 698901171 2.770000e-67 267.0
11 TraesCS1B01G078900 chr3A 88.682 645 35 16 942 1570 125408189 125407567 0.000000e+00 752.0
12 TraesCS1B01G078900 chr3A 88.527 645 36 16 942 1570 237823742 237823120 0.000000e+00 747.0
13 TraesCS1B01G078900 chr3A 88.372 645 37 17 942 1570 45640824 45641446 0.000000e+00 741.0
14 TraesCS1B01G078900 chr3A 89.474 228 18 3 524 745 237824113 237823886 2.750000e-72 283.0
15 TraesCS1B01G078900 chr3A 88.596 228 20 3 524 745 125408560 125408333 5.960000e-69 272.0
16 TraesCS1B01G078900 chr3A 88.158 228 21 3 524 745 45640453 45640680 2.770000e-67 267.0
17 TraesCS1B01G078900 chr4A 88.462 650 31 20 942 1570 31217323 31216697 0.000000e+00 745.0
18 TraesCS1B01G078900 chr4A 89.140 221 19 3 530 745 31217687 31217467 2.140000e-68 270.0
19 TraesCS1B01G078900 chr5A 88.281 640 37 16 947 1570 517846836 517847453 0.000000e+00 732.0
20 TraesCS1B01G078900 chr6A 87.017 647 38 21 942 1570 426301377 426300759 0.000000e+00 688.0
21 TraesCS1B01G078900 chr6A 90.308 227 17 2 524 745 426301747 426301521 4.580000e-75 292.0
22 TraesCS1B01G078900 chrUn 96.000 50 2 0 4084 4133 377047426 377047377 1.080000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G078900 chr1B 61894584 61899258 4674 False 8634.000000 8634 100.000000 1 4675 1 chr1B.!!$F1 4674
1 TraesCS1B01G078900 chr1A 41740982 41745092 4110 False 5605.000000 5605 91.673000 1 4030 1 chr1A.!!$F1 4029
2 TraesCS1B01G078900 chr1D 41717645 41722071 4426 False 1929.333333 4549 89.539667 2 4403 3 chr1D.!!$F3 4401
3 TraesCS1B01G078900 chr2A 698900404 698901398 994 True 512.500000 758 88.506000 524 1570 2 chr2A.!!$R3 1046
4 TraesCS1B01G078900 chr3A 237823120 237824113 993 True 515.000000 747 89.000500 524 1570 2 chr3A.!!$R2 1046
5 TraesCS1B01G078900 chr3A 125407567 125408560 993 True 512.000000 752 88.639000 524 1570 2 chr3A.!!$R1 1046
6 TraesCS1B01G078900 chr3A 45640453 45641446 993 False 504.000000 741 88.265000 524 1570 2 chr3A.!!$F1 1046
7 TraesCS1B01G078900 chr4A 31216697 31217687 990 True 507.500000 745 88.801000 530 1570 2 chr4A.!!$R1 1040
8 TraesCS1B01G078900 chr5A 517846836 517847453 617 False 732.000000 732 88.281000 947 1570 1 chr5A.!!$F1 623
9 TraesCS1B01G078900 chr6A 426300759 426301747 988 True 490.000000 688 88.662500 524 1570 2 chr6A.!!$R1 1046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 116 0.175073 GCCCTCCCAGTACTGTTACG 59.825 60.0 21.18 6.03 32.93 3.18 F
373 387 0.251341 ATCACCACAGTCAAAGGGGC 60.251 55.0 0.00 0.00 0.00 5.80 F
1607 1799 0.827925 AGAGGACGTCTCCAGCAACA 60.828 55.0 16.46 0.00 43.44 3.33 F
2441 2653 0.245266 CCAAGCAATGTGAGCATGCA 59.755 50.0 21.98 0.00 35.15 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1847 0.184692 TTGTTGGTGTGATCCCTGCA 59.815 50.0 0.0 0.0 0.00 4.41 R
1676 1868 0.533032 GGCTCCTGTCTGTAGGTGTC 59.467 60.0 0.0 0.0 38.99 3.67 R
3074 3286 0.036732 GCCCATCTGACCTGTGAACA 59.963 55.0 0.0 0.0 0.00 3.18 R
4147 4420 0.038599 TGCAGGCACAGAATGGACAT 59.961 50.0 0.0 0.0 43.62 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.935167 AGTTCTTCTCCTTTCTGAATCTCTC 58.065 40.000 0.00 0.00 0.00 3.20
43 44 6.725834 AGTTCTTCTCCTTTCTGAATCTCTCT 59.274 38.462 0.00 0.00 0.00 3.10
44 45 7.235399 AGTTCTTCTCCTTTCTGAATCTCTCTT 59.765 37.037 0.00 0.00 0.00 2.85
45 46 7.169158 TCTTCTCCTTTCTGAATCTCTCTTC 57.831 40.000 0.00 0.00 0.00 2.87
46 47 6.723515 TCTTCTCCTTTCTGAATCTCTCTTCA 59.276 38.462 0.00 0.00 34.14 3.02
67 70 0.969149 CCCCTTTCCTTGTTCTTGCC 59.031 55.000 0.00 0.00 0.00 4.52
71 74 1.460273 TTTCCTTGTTCTTGCCGGGC 61.460 55.000 13.32 13.32 0.00 6.13
113 116 0.175073 GCCCTCCCAGTACTGTTACG 59.825 60.000 21.18 6.03 32.93 3.18
114 117 0.822164 CCCTCCCAGTACTGTTACGG 59.178 60.000 21.18 14.73 32.93 4.02
133 145 1.156736 GCTTGTACAACATCCGTGCT 58.843 50.000 3.59 0.00 0.00 4.40
146 158 1.540267 TCCGTGCTCTAATCCGCTATC 59.460 52.381 0.00 0.00 0.00 2.08
152 164 3.182967 GCTCTAATCCGCTATCAATCCG 58.817 50.000 0.00 0.00 0.00 4.18
153 165 3.367498 GCTCTAATCCGCTATCAATCCGT 60.367 47.826 0.00 0.00 0.00 4.69
164 176 3.575965 ATCAATCCGTTGCAAGTTTCC 57.424 42.857 0.00 0.00 35.26 3.13
170 182 1.265905 CCGTTGCAAGTTTCCACTACC 59.734 52.381 0.00 0.00 30.68 3.18
221 233 5.484715 CCAATCATCCTTTTGAGCAAATGT 58.515 37.500 0.00 0.00 0.00 2.71
234 247 4.228210 TGAGCAAATGTTTATCCTCCTCCT 59.772 41.667 0.00 0.00 0.00 3.69
238 251 5.128919 CAAATGTTTATCCTCCTCCTCCTG 58.871 45.833 0.00 0.00 0.00 3.86
306 319 3.526931 TGCAACAGCAGGATCTACTAC 57.473 47.619 0.00 0.00 33.59 2.73
342 355 7.219484 CCATTGGGGACAGATTCATAATAAC 57.781 40.000 0.00 0.00 44.54 1.89
355 369 9.507329 AGATTCATAATAACAACGCCTCATTAT 57.493 29.630 0.00 0.00 0.00 1.28
361 375 2.356135 ACAACGCCTCATTATCACCAC 58.644 47.619 0.00 0.00 0.00 4.16
362 376 2.290008 ACAACGCCTCATTATCACCACA 60.290 45.455 0.00 0.00 0.00 4.17
363 377 2.315925 ACGCCTCATTATCACCACAG 57.684 50.000 0.00 0.00 0.00 3.66
364 378 1.555075 ACGCCTCATTATCACCACAGT 59.445 47.619 0.00 0.00 0.00 3.55
365 379 2.205074 CGCCTCATTATCACCACAGTC 58.795 52.381 0.00 0.00 0.00 3.51
366 380 2.418609 CGCCTCATTATCACCACAGTCA 60.419 50.000 0.00 0.00 0.00 3.41
367 381 3.609853 GCCTCATTATCACCACAGTCAA 58.390 45.455 0.00 0.00 0.00 3.18
368 382 4.009675 GCCTCATTATCACCACAGTCAAA 58.990 43.478 0.00 0.00 0.00 2.69
369 383 4.095483 GCCTCATTATCACCACAGTCAAAG 59.905 45.833 0.00 0.00 0.00 2.77
370 384 4.637534 CCTCATTATCACCACAGTCAAAGG 59.362 45.833 0.00 0.00 0.00 3.11
371 385 4.588899 TCATTATCACCACAGTCAAAGGG 58.411 43.478 0.00 0.00 0.00 3.95
372 386 3.433306 TTATCACCACAGTCAAAGGGG 57.567 47.619 0.00 0.00 0.00 4.79
373 387 0.251341 ATCACCACAGTCAAAGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
374 388 1.903404 CACCACAGTCAAAGGGGCC 60.903 63.158 0.00 0.00 0.00 5.80
407 421 2.399356 GCAAGTTACCGCAGCTCCC 61.399 63.158 0.00 0.00 0.00 4.30
641 689 1.757118 CTGACGGCTCCTTAGATTGGA 59.243 52.381 0.00 0.00 0.00 3.53
673 726 2.124193 TGCAGTGCAGCTTGGTGT 60.124 55.556 15.37 0.00 33.32 4.16
717 774 4.996434 GGCGTGTGAGGCTGCACT 62.996 66.667 14.31 0.00 39.49 4.40
722 779 1.601903 CGTGTGAGGCTGCACTTTTTA 59.398 47.619 14.31 0.00 39.49 1.52
747 804 3.297134 TGGATGTAAAGAGGAATGGCC 57.703 47.619 0.00 0.00 0.00 5.36
805 862 9.263446 TGTAACTATGTCAGGTTAATTAGTCCT 57.737 33.333 5.73 5.73 31.07 3.85
810 867 9.209175 CTATGTCAGGTTAATTAGTCCTTATGC 57.791 37.037 8.09 0.00 0.00 3.14
817 874 8.914011 AGGTTAATTAGTCCTTATGCCATTTTC 58.086 33.333 5.73 0.00 0.00 2.29
836 893 3.110447 TCCTTGGCATTTCAACTTTGC 57.890 42.857 0.00 0.00 35.64 3.68
856 913 3.259374 TGCTGTGGGTTTTTGAACTTTGA 59.741 39.130 0.00 0.00 0.00 2.69
920 984 9.151471 TCACACTGTAGTTATTTCAAGCTAATC 57.849 33.333 0.00 0.00 0.00 1.75
1051 1168 4.086706 TGTGTTTCTTCCTTCCTTCCTC 57.913 45.455 0.00 0.00 0.00 3.71
1087 1204 3.382865 TGTTTGTTTGCCAAGCACATCTA 59.617 39.130 0.00 0.00 39.07 1.98
1088 1205 4.039004 TGTTTGTTTGCCAAGCACATCTAT 59.961 37.500 0.00 0.00 39.07 1.98
1089 1206 4.439305 TTGTTTGCCAAGCACATCTATC 57.561 40.909 0.00 0.00 38.71 2.08
1090 1207 3.689347 TGTTTGCCAAGCACATCTATCT 58.311 40.909 0.00 0.00 38.71 1.98
1179 1302 4.834357 CCAAATGATGGCATATCGTTCA 57.166 40.909 0.00 0.00 43.80 3.18
1325 1451 7.615582 TCTTTGTCAAGCCAATAAGATAGTG 57.384 36.000 0.00 0.00 0.00 2.74
1380 1547 7.763528 GCATATTAGCAGCACTGTAGAATAGAT 59.236 37.037 0.00 0.00 0.00 1.98
1415 1601 5.658468 TGCAAGTGAATGTTGTCAATTTGA 58.342 33.333 0.00 0.00 33.78 2.69
1607 1799 0.827925 AGAGGACGTCTCCAGCAACA 60.828 55.000 16.46 0.00 43.44 3.33
1655 1847 1.619332 GGAGGGAACGAAACTGACTCT 59.381 52.381 0.00 0.00 0.00 3.24
1676 1868 1.538047 CAGGGATCACACCAACAAGG 58.462 55.000 0.00 0.00 45.67 3.61
1688 1880 2.104281 ACCAACAAGGACACCTACAGAC 59.896 50.000 0.00 0.00 41.22 3.51
1796 1988 3.881688 CTGATTGCCCTCACTGGATTTAG 59.118 47.826 0.00 0.00 38.35 1.85
1848 2040 1.279846 TCGACATTCCAAAGTACCCCC 59.720 52.381 0.00 0.00 0.00 5.40
1858 2050 3.509967 CCAAAGTACCCCCTTCAATGTTC 59.490 47.826 0.00 0.00 0.00 3.18
1890 2082 8.242729 AGAACTGAACTTCCATTTCTCAAAAT 57.757 30.769 0.00 0.00 32.76 1.82
1984 2196 1.725164 GCAGAATCTTTTGCAGCAAGC 59.275 47.619 8.12 1.87 45.96 4.01
1995 2207 7.031372 TCTTTTGCAGCAAGCTTCATTTATAG 58.969 34.615 8.12 0.00 45.94 1.31
2003 2215 7.430502 CAGCAAGCTTCATTTATAGTGCTTAAC 59.569 37.037 0.00 0.00 38.97 2.01
2005 2217 7.641802 GCAAGCTTCATTTATAGTGCTTAACTC 59.358 37.037 0.00 0.00 40.56 3.01
2023 2235 7.361201 GCTTAACTCATACTGTCTTGCATTCAA 60.361 37.037 0.00 0.00 0.00 2.69
2111 2323 3.117888 AGCTCAAGAAGACCAAGGAACAA 60.118 43.478 0.00 0.00 0.00 2.83
2116 2328 4.503714 AGAAGACCAAGGAACAACTGAA 57.496 40.909 0.00 0.00 0.00 3.02
2201 2413 1.999735 GATGCATCGTCGAAACTGGAA 59.000 47.619 11.68 0.00 0.00 3.53
2207 2419 1.268899 TCGTCGAAACTGGAAGAGTCC 59.731 52.381 0.00 0.00 45.21 3.85
2220 2432 0.545309 AGAGTCCCAGTGCCAGCTTA 60.545 55.000 0.00 0.00 0.00 3.09
2273 2485 3.895025 GAGCTGCGCAAGATCCAA 58.105 55.556 13.05 0.00 35.13 3.53
2408 2620 3.554692 GAGGCGACGGTGCAATCG 61.555 66.667 10.95 10.95 41.32 3.34
2441 2653 0.245266 CCAAGCAATGTGAGCATGCA 59.755 50.000 21.98 0.00 35.15 3.96
2500 2712 0.883833 AGGCTTGCAACGATTGAAGG 59.116 50.000 0.00 0.00 0.00 3.46
2556 2768 0.750546 AGCTGATGCGAATGCCATGT 60.751 50.000 0.00 0.00 45.42 3.21
2676 2888 3.833545 TCGAGCTCAGTGAGTCTAAAC 57.166 47.619 21.06 3.67 31.39 2.01
2683 2895 2.168496 CAGTGAGTCTAAACCTCGGGA 58.832 52.381 0.00 0.00 0.00 5.14
2694 2906 2.496341 CTCGGGAAGCATCGCTCA 59.504 61.111 4.44 0.00 38.25 4.26
2714 2926 5.490159 CTCAAGGAAGATCTGAAGAAAGCT 58.510 41.667 0.00 0.00 0.00 3.74
2809 3021 3.038710 CTGAAGTTGTGAAAAAGAGCGC 58.961 45.455 0.00 0.00 0.00 5.92
2816 3028 0.955428 TGAAAAAGAGCGCGCATCCT 60.955 50.000 35.10 23.18 0.00 3.24
2818 3030 1.599542 GAAAAAGAGCGCGCATCCTAT 59.400 47.619 35.10 15.22 0.00 2.57
2855 3067 1.679898 CTGTGGAAGTCCTGACCCC 59.320 63.158 0.00 0.00 36.82 4.95
2871 3083 0.250234 CCCCGAGATTGAGCACTTGA 59.750 55.000 0.00 0.00 0.00 3.02
2942 3154 0.319555 TGGCCTTCGAGACAAAGACG 60.320 55.000 3.32 0.00 0.00 4.18
2945 3157 1.872653 GCCTTCGAGACAAAGACGGTT 60.873 52.381 0.00 0.00 0.00 4.44
3074 3286 4.496336 GGCAAGGCGCAGGAGGAT 62.496 66.667 10.83 0.00 45.17 3.24
3075 3287 3.207669 GCAAGGCGCAGGAGGATG 61.208 66.667 10.83 0.00 41.79 3.51
3089 3301 2.503356 GGAGGATGTTCACAGGTCAGAT 59.497 50.000 0.00 0.00 0.00 2.90
3110 3322 2.260247 GCTGAGTGAAATGCAGCCA 58.740 52.632 0.00 0.00 46.94 4.75
3114 3326 1.072806 TGAGTGAAATGCAGCCAGAGT 59.927 47.619 0.00 0.00 0.00 3.24
3185 3397 3.369892 CGAACCTGATGGACAAGGAGAAT 60.370 47.826 0.00 0.00 37.04 2.40
3542 3763 3.519930 GAGAGGACCGGGTCGCTC 61.520 72.222 25.73 25.73 33.36 5.03
3676 3897 0.178961 AAGAAGGGGCCCAAGTGAAC 60.179 55.000 27.72 3.49 0.00 3.18
3698 3919 0.605319 GCCCATGAGACCGTTCAACA 60.605 55.000 0.00 0.00 0.00 3.33
3719 3940 3.128938 CAGACGAGAGGTAAGGTAAGGTG 59.871 52.174 0.00 0.00 0.00 4.00
3721 3942 3.952967 GACGAGAGGTAAGGTAAGGTGAT 59.047 47.826 0.00 0.00 0.00 3.06
3723 3944 5.513233 ACGAGAGGTAAGGTAAGGTGATAA 58.487 41.667 0.00 0.00 0.00 1.75
3724 3945 5.359292 ACGAGAGGTAAGGTAAGGTGATAAC 59.641 44.000 0.00 0.00 0.00 1.89
3725 3946 5.221204 CGAGAGGTAAGGTAAGGTGATAACC 60.221 48.000 0.00 0.00 0.00 2.85
3732 3959 6.831664 AAGGTAAGGTGATAACCAGATGAT 57.168 37.500 0.85 0.00 35.64 2.45
3769 3996 3.947196 AGAGCTAGTCAGTGATCAGAGTG 59.053 47.826 0.00 0.00 0.00 3.51
3788 4015 4.857679 AGTGGTAGTCTAGTAGAGGTTGG 58.142 47.826 0.00 0.00 0.00 3.77
3791 4018 3.380954 GGTAGTCTAGTAGAGGTTGGTGC 59.619 52.174 0.00 0.00 0.00 5.01
3794 4021 2.166664 GTCTAGTAGAGGTTGGTGCTGG 59.833 54.545 0.00 0.00 0.00 4.85
3818 4045 4.464244 TGAGTAGCAGAAATCTGTAGCTGT 59.536 41.667 11.77 0.00 45.45 4.40
3835 4062 4.888239 TAGCTGTGCTTCTAGGGTTACTAG 59.112 45.833 0.00 0.00 43.95 2.57
3879 4111 4.840680 TGGTAGATGGATATCTGTCCCTTG 59.159 45.833 2.05 0.00 43.41 3.61
3922 4154 4.017037 AGAGAGAGAACCTCCTGTGGATTA 60.017 45.833 0.00 0.00 42.97 1.75
4059 4293 7.654022 TCTTAATGGTTCCAGTTCAGTTTTT 57.346 32.000 0.00 0.00 0.00 1.94
4088 4329 9.181061 CATATGCATAATATTCATTCTGTCCCA 57.819 33.333 11.13 0.00 28.26 4.37
4089 4330 9.758021 ATATGCATAATATTCATTCTGTCCCAA 57.242 29.630 11.13 0.00 0.00 4.12
4090 4331 8.660295 ATGCATAATATTCATTCTGTCCCAAT 57.340 30.769 0.00 0.00 0.00 3.16
4100 4373 2.483547 TCTGTCCCAATCCCGGATAAA 58.516 47.619 0.73 0.00 0.00 1.40
4105 4378 1.073923 CCCAATCCCGGATAAAGGAGG 59.926 57.143 0.73 4.35 35.08 4.30
4107 4380 2.644798 CCAATCCCGGATAAAGGAGGAT 59.355 50.000 0.73 0.00 39.02 3.24
4129 4402 1.130561 GTTGTGATAGGTTTGGCGAGC 59.869 52.381 0.00 0.00 0.00 5.03
4140 4413 1.600636 TGGCGAGCCAAACCAGAAG 60.601 57.895 15.24 0.00 44.12 2.85
4141 4414 1.302511 GGCGAGCCAAACCAGAAGA 60.303 57.895 9.58 0.00 35.81 2.87
4142 4415 0.889186 GGCGAGCCAAACCAGAAGAA 60.889 55.000 9.58 0.00 35.81 2.52
4143 4416 0.238553 GCGAGCCAAACCAGAAGAAC 59.761 55.000 0.00 0.00 0.00 3.01
4144 4417 1.593196 CGAGCCAAACCAGAAGAACA 58.407 50.000 0.00 0.00 0.00 3.18
4145 4418 2.154462 CGAGCCAAACCAGAAGAACAT 58.846 47.619 0.00 0.00 0.00 2.71
4146 4419 3.334691 CGAGCCAAACCAGAAGAACATA 58.665 45.455 0.00 0.00 0.00 2.29
4147 4420 3.751175 CGAGCCAAACCAGAAGAACATAA 59.249 43.478 0.00 0.00 0.00 1.90
4148 4421 4.396166 CGAGCCAAACCAGAAGAACATAAT 59.604 41.667 0.00 0.00 0.00 1.28
4149 4422 5.644644 GAGCCAAACCAGAAGAACATAATG 58.355 41.667 0.00 0.00 0.00 1.90
4150 4423 5.079643 AGCCAAACCAGAAGAACATAATGT 58.920 37.500 0.00 0.00 0.00 2.71
4151 4424 5.183904 AGCCAAACCAGAAGAACATAATGTC 59.816 40.000 0.00 0.00 0.00 3.06
4156 4429 7.396540 AACCAGAAGAACATAATGTCCATTC 57.603 36.000 0.00 0.00 32.50 2.67
4159 4432 6.600822 CCAGAAGAACATAATGTCCATTCTGT 59.399 38.462 17.17 5.50 39.64 3.41
4161 4434 5.824904 AGAACATAATGTCCATTCTGTGC 57.175 39.130 10.60 9.25 37.90 4.57
4199 4472 4.114794 CTGCAAAAGAAAGTTCAGGTTGG 58.885 43.478 0.00 0.00 0.00 3.77
4213 4486 5.401531 TCAGGTTGGTACAGTGAGTAATC 57.598 43.478 0.00 0.00 42.39 1.75
4214 4487 4.222145 TCAGGTTGGTACAGTGAGTAATCC 59.778 45.833 0.00 0.00 42.39 3.01
4216 4489 4.223032 AGGTTGGTACAGTGAGTAATCCTG 59.777 45.833 0.00 7.00 42.39 3.86
4226 4502 6.706270 ACAGTGAGTAATCCTGTAAACAGTTG 59.294 38.462 11.10 0.00 42.27 3.16
4249 4525 2.160205 GGTTTGGAAGTTGAGGGCTAC 58.840 52.381 0.00 0.00 0.00 3.58
4268 4544 3.887621 ACGCAGAAACCTGATTAGCTA 57.112 42.857 0.00 0.00 33.56 3.32
4274 4550 5.069251 GCAGAAACCTGATTAGCTAGAGGTA 59.931 44.000 17.19 0.00 37.88 3.08
4275 4551 6.508777 CAGAAACCTGATTAGCTAGAGGTAC 58.491 44.000 17.19 14.58 37.88 3.34
4288 4564 5.828859 AGCTAGAGGTACGATGACAGTAAAT 59.171 40.000 0.00 0.00 0.00 1.40
4329 4605 5.298276 TGTGGGTGTGAATGTTAAGAGTTTC 59.702 40.000 0.00 0.00 0.00 2.78
4344 4620 5.021033 AGAGTTTCACTGCTATCATCTGG 57.979 43.478 0.00 0.00 0.00 3.86
4373 4649 9.927668 CCAAAAGTAACATAGATCAACCAAAAT 57.072 29.630 0.00 0.00 0.00 1.82
4383 4659 6.089249 AGATCAACCAAAATCCTGTCAAAC 57.911 37.500 0.00 0.00 0.00 2.93
4397 4673 1.206578 CAAACGGCTTGCGAACGAT 59.793 52.632 4.85 0.00 0.00 3.73
4417 4693 5.279384 CGATAGTAACACATGTGTAGGTCC 58.721 45.833 30.75 16.84 44.13 4.46
4418 4694 3.975168 AGTAACACATGTGTAGGTCCC 57.025 47.619 30.75 14.71 44.13 4.46
4419 4695 2.570302 AGTAACACATGTGTAGGTCCCC 59.430 50.000 30.75 13.45 44.13 4.81
4420 4696 0.323629 AACACATGTGTAGGTCCCCG 59.676 55.000 30.75 1.21 44.13 5.73
4421 4697 0.543410 ACACATGTGTAGGTCCCCGA 60.543 55.000 29.66 0.00 42.90 5.14
4422 4698 0.175760 CACATGTGTAGGTCCCCGAG 59.824 60.000 18.03 0.00 0.00 4.63
4423 4699 1.144057 CATGTGTAGGTCCCCGAGC 59.856 63.158 0.00 0.00 0.00 5.03
4424 4700 1.305802 ATGTGTAGGTCCCCGAGCA 60.306 57.895 0.00 0.00 31.89 4.26
4425 4701 1.330655 ATGTGTAGGTCCCCGAGCAG 61.331 60.000 0.00 0.00 31.89 4.24
4426 4702 1.681327 GTGTAGGTCCCCGAGCAGA 60.681 63.158 0.00 0.00 31.89 4.26
4427 4703 1.043673 GTGTAGGTCCCCGAGCAGAT 61.044 60.000 0.00 0.00 31.89 2.90
4428 4704 0.755698 TGTAGGTCCCCGAGCAGATC 60.756 60.000 0.00 0.00 31.89 2.75
4429 4705 0.755698 GTAGGTCCCCGAGCAGATCA 60.756 60.000 0.00 0.00 31.89 2.92
4430 4706 0.188587 TAGGTCCCCGAGCAGATCAT 59.811 55.000 0.00 0.00 31.89 2.45
4431 4707 0.188587 AGGTCCCCGAGCAGATCATA 59.811 55.000 0.00 0.00 31.89 2.15
4432 4708 1.203237 AGGTCCCCGAGCAGATCATAT 60.203 52.381 0.00 0.00 31.89 1.78
4433 4709 1.205893 GGTCCCCGAGCAGATCATATC 59.794 57.143 0.00 0.00 0.00 1.63
4434 4710 1.895798 GTCCCCGAGCAGATCATATCA 59.104 52.381 0.00 0.00 0.00 2.15
4435 4711 2.094286 GTCCCCGAGCAGATCATATCAG 60.094 54.545 0.00 0.00 0.00 2.90
4436 4712 1.206610 CCCCGAGCAGATCATATCAGG 59.793 57.143 0.00 0.00 0.00 3.86
4437 4713 1.898472 CCCGAGCAGATCATATCAGGT 59.102 52.381 0.00 0.00 0.00 4.00
4438 4714 3.092301 CCCGAGCAGATCATATCAGGTA 58.908 50.000 0.00 0.00 0.00 3.08
4439 4715 3.511540 CCCGAGCAGATCATATCAGGTAA 59.488 47.826 0.00 0.00 0.00 2.85
4440 4716 4.161189 CCCGAGCAGATCATATCAGGTAAT 59.839 45.833 0.00 0.00 0.00 1.89
4441 4717 5.360999 CCCGAGCAGATCATATCAGGTAATA 59.639 44.000 0.00 0.00 0.00 0.98
4442 4718 6.127338 CCCGAGCAGATCATATCAGGTAATAA 60.127 42.308 0.00 0.00 0.00 1.40
4443 4719 7.323420 CCGAGCAGATCATATCAGGTAATAAA 58.677 38.462 0.00 0.00 0.00 1.40
4444 4720 7.819415 CCGAGCAGATCATATCAGGTAATAAAA 59.181 37.037 0.00 0.00 0.00 1.52
4445 4721 9.376075 CGAGCAGATCATATCAGGTAATAAAAT 57.624 33.333 0.00 0.00 0.00 1.82
4470 4746 7.905126 TGTGTAATAAATGCAAGACATACTCG 58.095 34.615 0.00 0.00 38.34 4.18
4471 4747 6.846283 GTGTAATAAATGCAAGACATACTCGC 59.154 38.462 0.00 0.00 38.34 5.03
4472 4748 6.761242 TGTAATAAATGCAAGACATACTCGCT 59.239 34.615 0.00 0.00 38.34 4.93
4473 4749 5.663795 ATAAATGCAAGACATACTCGCTG 57.336 39.130 0.00 0.00 38.34 5.18
4474 4750 2.680312 ATGCAAGACATACTCGCTGT 57.320 45.000 0.00 0.00 37.17 4.40
4475 4751 1.713597 TGCAAGACATACTCGCTGTG 58.286 50.000 0.00 0.00 28.74 3.66
4476 4752 0.371645 GCAAGACATACTCGCTGTGC 59.628 55.000 0.00 0.00 0.00 4.57
4477 4753 1.713597 CAAGACATACTCGCTGTGCA 58.286 50.000 0.00 0.00 0.00 4.57
4478 4754 2.274437 CAAGACATACTCGCTGTGCAT 58.726 47.619 0.00 0.00 0.00 3.96
4479 4755 3.447742 CAAGACATACTCGCTGTGCATA 58.552 45.455 0.00 0.00 0.00 3.14
4480 4756 3.361794 AGACATACTCGCTGTGCATAG 57.638 47.619 6.03 6.03 0.00 2.23
4481 4757 2.952310 AGACATACTCGCTGTGCATAGA 59.048 45.455 15.47 0.00 0.00 1.98
4482 4758 3.381590 AGACATACTCGCTGTGCATAGAA 59.618 43.478 15.47 0.13 0.00 2.10
4483 4759 3.711086 ACATACTCGCTGTGCATAGAAG 58.289 45.455 15.47 12.48 0.00 2.85
4484 4760 3.381590 ACATACTCGCTGTGCATAGAAGA 59.618 43.478 15.47 11.23 0.00 2.87
4485 4761 4.142160 ACATACTCGCTGTGCATAGAAGAA 60.142 41.667 15.47 0.00 0.00 2.52
4486 4762 3.533606 ACTCGCTGTGCATAGAAGAAT 57.466 42.857 15.47 0.00 0.00 2.40
4487 4763 4.655762 ACTCGCTGTGCATAGAAGAATA 57.344 40.909 15.47 0.00 0.00 1.75
4488 4764 4.615949 ACTCGCTGTGCATAGAAGAATAG 58.384 43.478 15.47 4.06 0.00 1.73
4489 4765 3.384668 TCGCTGTGCATAGAAGAATAGC 58.615 45.455 15.47 0.00 0.00 2.97
4490 4766 3.126073 CGCTGTGCATAGAAGAATAGCA 58.874 45.455 15.47 0.00 0.00 3.49
4491 4767 3.557185 CGCTGTGCATAGAAGAATAGCAA 59.443 43.478 15.47 0.00 36.91 3.91
4492 4768 4.212847 CGCTGTGCATAGAAGAATAGCAAT 59.787 41.667 15.47 0.00 36.91 3.56
4493 4769 5.450171 GCTGTGCATAGAAGAATAGCAATG 58.550 41.667 15.47 0.00 36.91 2.82
4494 4770 5.008415 GCTGTGCATAGAAGAATAGCAATGT 59.992 40.000 15.47 0.00 36.91 2.71
4495 4771 6.203530 GCTGTGCATAGAAGAATAGCAATGTA 59.796 38.462 15.47 0.00 36.91 2.29
4496 4772 7.570875 GCTGTGCATAGAAGAATAGCAATGTAG 60.571 40.741 15.47 0.00 36.91 2.74
4497 4773 6.707608 TGTGCATAGAAGAATAGCAATGTAGG 59.292 38.462 0.00 0.00 36.91 3.18
4498 4774 6.148480 GTGCATAGAAGAATAGCAATGTAGGG 59.852 42.308 0.00 0.00 36.91 3.53
4499 4775 5.123027 GCATAGAAGAATAGCAATGTAGGGC 59.877 44.000 0.00 0.00 0.00 5.19
4500 4776 6.471146 CATAGAAGAATAGCAATGTAGGGCT 58.529 40.000 0.00 0.00 43.94 5.19
4501 4777 7.615403 CATAGAAGAATAGCAATGTAGGGCTA 58.385 38.462 0.00 0.00 45.75 3.93
4502 4778 5.859495 AGAAGAATAGCAATGTAGGGCTAC 58.141 41.667 0.00 0.00 44.62 3.58
4503 4779 4.625607 AGAATAGCAATGTAGGGCTACC 57.374 45.455 0.00 0.00 44.62 3.18
4504 4780 3.006967 AGAATAGCAATGTAGGGCTACCG 59.993 47.826 0.00 0.00 44.62 4.02
4505 4781 1.045407 TAGCAATGTAGGGCTACCGG 58.955 55.000 0.00 0.00 43.47 5.28
4506 4782 1.892391 GCAATGTAGGGCTACCGGC 60.892 63.158 0.00 0.00 43.47 6.13
4507 4783 1.594293 CAATGTAGGGCTACCGGCG 60.594 63.158 0.00 0.00 43.47 6.46
4508 4784 2.803817 AATGTAGGGCTACCGGCGG 61.804 63.158 27.06 27.06 43.47 6.13
4554 4830 4.221422 GGCGGCGGCTAGATCACA 62.221 66.667 27.22 0.00 39.81 3.58
4555 4831 2.202878 GCGGCGGCTAGATCACAA 60.203 61.111 9.78 0.00 35.83 3.33
4556 4832 1.595382 GCGGCGGCTAGATCACAAT 60.595 57.895 9.78 0.00 35.83 2.71
4557 4833 1.835483 GCGGCGGCTAGATCACAATG 61.835 60.000 9.78 0.00 35.83 2.82
4558 4834 1.224069 CGGCGGCTAGATCACAATGG 61.224 60.000 7.61 0.00 0.00 3.16
4559 4835 0.179045 GGCGGCTAGATCACAATGGT 60.179 55.000 0.00 0.00 0.00 3.55
4560 4836 1.070134 GGCGGCTAGATCACAATGGTA 59.930 52.381 0.00 0.00 0.00 3.25
4561 4837 2.408050 GCGGCTAGATCACAATGGTAG 58.592 52.381 0.00 0.00 0.00 3.18
4562 4838 2.868044 GCGGCTAGATCACAATGGTAGG 60.868 54.545 0.00 0.00 0.00 3.18
4563 4839 2.628178 CGGCTAGATCACAATGGTAGGA 59.372 50.000 0.00 0.00 0.00 2.94
4564 4840 3.069586 CGGCTAGATCACAATGGTAGGAA 59.930 47.826 0.00 0.00 0.00 3.36
4565 4841 4.636249 GGCTAGATCACAATGGTAGGAAG 58.364 47.826 0.00 0.00 0.00 3.46
4566 4842 4.345257 GGCTAGATCACAATGGTAGGAAGA 59.655 45.833 0.00 0.00 0.00 2.87
4567 4843 5.012561 GGCTAGATCACAATGGTAGGAAGAT 59.987 44.000 0.00 0.00 0.00 2.40
4568 4844 5.931146 GCTAGATCACAATGGTAGGAAGATG 59.069 44.000 0.00 0.00 0.00 2.90
4569 4845 5.965033 AGATCACAATGGTAGGAAGATGT 57.035 39.130 0.00 0.00 0.00 3.06
4570 4846 5.923204 AGATCACAATGGTAGGAAGATGTC 58.077 41.667 0.00 0.00 0.00 3.06
4571 4847 4.123497 TCACAATGGTAGGAAGATGTCG 57.877 45.455 0.00 0.00 0.00 4.35
4572 4848 3.767131 TCACAATGGTAGGAAGATGTCGA 59.233 43.478 0.00 0.00 0.00 4.20
4573 4849 3.865745 CACAATGGTAGGAAGATGTCGAC 59.134 47.826 9.11 9.11 0.00 4.20
4574 4850 3.513912 ACAATGGTAGGAAGATGTCGACA 59.486 43.478 22.48 22.48 0.00 4.35
4575 4851 3.802948 ATGGTAGGAAGATGTCGACAC 57.197 47.619 22.71 14.69 0.00 3.67
4576 4852 1.822990 TGGTAGGAAGATGTCGACACC 59.177 52.381 22.71 17.43 0.00 4.16
4577 4853 1.822990 GGTAGGAAGATGTCGACACCA 59.177 52.381 22.71 5.77 0.00 4.17
4578 4854 2.431057 GGTAGGAAGATGTCGACACCAT 59.569 50.000 22.71 2.92 0.00 3.55
4579 4855 3.118738 GGTAGGAAGATGTCGACACCATT 60.119 47.826 22.71 15.50 0.00 3.16
4580 4856 3.252974 AGGAAGATGTCGACACCATTC 57.747 47.619 22.71 22.23 0.00 2.67
4581 4857 2.834549 AGGAAGATGTCGACACCATTCT 59.165 45.455 22.71 16.82 0.00 2.40
4582 4858 3.118956 AGGAAGATGTCGACACCATTCTC 60.119 47.826 22.71 13.43 0.00 2.87
4583 4859 3.368427 GGAAGATGTCGACACCATTCTCA 60.368 47.826 22.71 0.00 0.00 3.27
4584 4860 3.961480 AGATGTCGACACCATTCTCAA 57.039 42.857 22.71 0.00 0.00 3.02
4585 4861 4.271696 AGATGTCGACACCATTCTCAAA 57.728 40.909 22.71 0.00 0.00 2.69
4586 4862 4.641396 AGATGTCGACACCATTCTCAAAA 58.359 39.130 22.71 0.00 0.00 2.44
4587 4863 5.063204 AGATGTCGACACCATTCTCAAAAA 58.937 37.500 22.71 0.00 0.00 1.94
4614 4890 8.980143 AAAAGAAAAAGAAAAAGATGTCGACA 57.020 26.923 22.48 22.48 0.00 4.35
4615 4891 7.971004 AAGAAAAAGAAAAAGATGTCGACAC 57.029 32.000 22.71 14.69 0.00 3.67
4616 4892 6.495706 AGAAAAAGAAAAAGATGTCGACACC 58.504 36.000 22.71 12.28 0.00 4.16
4617 4893 4.468095 AAAGAAAAAGATGTCGACACCG 57.532 40.909 22.71 0.00 37.07 4.94
4618 4894 3.380479 AGAAAAAGATGTCGACACCGA 57.620 42.857 22.71 0.00 43.35 4.69
4626 4902 3.065306 TCGACACCGATTGCCCTT 58.935 55.556 0.00 0.00 40.30 3.95
4627 4903 1.079405 TCGACACCGATTGCCCTTC 60.079 57.895 0.00 0.00 40.30 3.46
4628 4904 1.375396 CGACACCGATTGCCCTTCA 60.375 57.895 0.00 0.00 38.22 3.02
4629 4905 1.361668 CGACACCGATTGCCCTTCAG 61.362 60.000 0.00 0.00 38.22 3.02
4630 4906 1.002134 ACACCGATTGCCCTTCAGG 60.002 57.895 0.00 0.00 39.47 3.86
4641 4917 1.528129 CCCTTCAGGCTTCAAGTGAC 58.472 55.000 0.00 0.00 0.00 3.67
4642 4918 1.528129 CCTTCAGGCTTCAAGTGACC 58.472 55.000 0.00 0.00 0.00 4.02
4643 4919 1.528129 CTTCAGGCTTCAAGTGACCC 58.472 55.000 0.00 0.00 0.00 4.46
4644 4920 0.843309 TTCAGGCTTCAAGTGACCCA 59.157 50.000 0.00 0.00 0.00 4.51
4645 4921 1.067295 TCAGGCTTCAAGTGACCCAT 58.933 50.000 0.00 0.00 0.00 4.00
4646 4922 1.003580 TCAGGCTTCAAGTGACCCATC 59.996 52.381 0.00 0.00 0.00 3.51
4647 4923 0.329596 AGGCTTCAAGTGACCCATCC 59.670 55.000 0.00 0.00 0.00 3.51
4648 4924 0.038166 GGCTTCAAGTGACCCATCCA 59.962 55.000 0.00 0.00 0.00 3.41
4649 4925 1.457346 GCTTCAAGTGACCCATCCAG 58.543 55.000 0.00 0.00 0.00 3.86
4650 4926 1.952367 GCTTCAAGTGACCCATCCAGG 60.952 57.143 0.00 0.00 37.03 4.45
4651 4927 1.352352 CTTCAAGTGACCCATCCAGGT 59.648 52.381 0.00 0.00 45.12 4.00
4652 4928 1.444933 TCAAGTGACCCATCCAGGTT 58.555 50.000 0.00 0.00 41.42 3.50
4653 4929 2.626785 TCAAGTGACCCATCCAGGTTA 58.373 47.619 0.00 0.00 41.42 2.85
4654 4930 2.983192 TCAAGTGACCCATCCAGGTTAA 59.017 45.455 0.00 0.00 41.42 2.01
4655 4931 3.396276 TCAAGTGACCCATCCAGGTTAAA 59.604 43.478 0.00 0.00 41.42 1.52
4656 4932 3.434940 AGTGACCCATCCAGGTTAAAC 57.565 47.619 0.00 0.00 41.42 2.01
4657 4933 2.986728 AGTGACCCATCCAGGTTAAACT 59.013 45.455 0.00 0.00 41.42 2.66
4658 4934 3.081804 GTGACCCATCCAGGTTAAACTG 58.918 50.000 13.90 13.90 41.42 3.16
4659 4935 2.092323 GACCCATCCAGGTTAAACTGC 58.908 52.381 15.42 0.00 41.42 4.40
4660 4936 1.427368 ACCCATCCAGGTTAAACTGCA 59.573 47.619 15.42 0.00 36.44 4.41
4661 4937 2.094675 CCCATCCAGGTTAAACTGCAG 58.905 52.381 15.42 13.48 37.16 4.41
4662 4938 1.474077 CCATCCAGGTTAAACTGCAGC 59.526 52.381 15.42 0.00 37.16 5.25
4663 4939 2.161855 CATCCAGGTTAAACTGCAGCA 58.838 47.619 15.42 0.00 37.16 4.41
4664 4940 2.584835 TCCAGGTTAAACTGCAGCAT 57.415 45.000 15.42 5.23 37.16 3.79
4665 4941 3.712016 TCCAGGTTAAACTGCAGCATA 57.288 42.857 15.42 4.09 37.16 3.14
4666 4942 3.609853 TCCAGGTTAAACTGCAGCATAG 58.390 45.455 15.42 0.00 37.16 2.23
4667 4943 2.684881 CCAGGTTAAACTGCAGCATAGG 59.315 50.000 15.42 1.38 37.16 2.57
4668 4944 2.098117 CAGGTTAAACTGCAGCATAGGC 59.902 50.000 15.27 0.00 41.61 3.93
4669 4945 1.405463 GGTTAAACTGCAGCATAGGCC 59.595 52.381 15.27 9.43 42.56 5.19
4670 4946 1.405463 GTTAAACTGCAGCATAGGCCC 59.595 52.381 15.27 0.00 42.56 5.80
4671 4947 0.106719 TAAACTGCAGCATAGGCCCC 60.107 55.000 15.27 0.00 42.56 5.80
4672 4948 2.861271 AAACTGCAGCATAGGCCCCC 62.861 60.000 15.27 0.00 42.56 5.40
4673 4949 3.812544 CTGCAGCATAGGCCCCCA 61.813 66.667 0.00 0.00 42.56 4.96
4674 4950 3.786884 CTGCAGCATAGGCCCCCAG 62.787 68.421 0.00 0.00 42.56 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.158460 AGAACAAGGAAAGGGGGTGAAG 60.158 50.000 0.00 0.00 0.00 3.02
43 44 1.856920 AGAACAAGGAAAGGGGGTGAA 59.143 47.619 0.00 0.00 0.00 3.18
44 45 1.529744 AGAACAAGGAAAGGGGGTGA 58.470 50.000 0.00 0.00 0.00 4.02
45 46 1.963515 CAAGAACAAGGAAAGGGGGTG 59.036 52.381 0.00 0.00 0.00 4.61
46 47 1.757764 GCAAGAACAAGGAAAGGGGGT 60.758 52.381 0.00 0.00 0.00 4.95
67 70 2.322081 CGTGGGTTTGTACTGCCCG 61.322 63.158 12.85 2.11 45.19 6.13
71 74 5.636837 CCATTTATTCGTGGGTTTGTACTG 58.363 41.667 0.00 0.00 0.00 2.74
113 116 0.168128 GCACGGATGTTGTACAAGCC 59.832 55.000 8.98 9.97 0.00 4.35
114 117 1.128692 GAGCACGGATGTTGTACAAGC 59.871 52.381 8.98 7.08 0.00 4.01
133 145 4.556233 CAACGGATTGATAGCGGATTAGA 58.444 43.478 0.00 0.00 38.15 2.10
146 158 2.034558 AGTGGAAACTTGCAACGGATTG 59.965 45.455 0.00 0.00 38.99 2.67
152 164 2.949644 AGTGGTAGTGGAAACTTGCAAC 59.050 45.455 0.00 0.00 0.00 4.17
153 165 3.290948 AGTGGTAGTGGAAACTTGCAA 57.709 42.857 0.00 0.00 0.00 4.08
164 176 4.820897 TGTGCAGATTTCTAGTGGTAGTG 58.179 43.478 0.00 0.00 0.00 2.74
170 182 3.736530 GCACTGTGCAGATTTCTAGTG 57.263 47.619 26.70 0.00 44.26 2.74
221 233 2.402564 CAGCAGGAGGAGGAGGATAAA 58.597 52.381 0.00 0.00 0.00 1.40
234 247 1.597742 GAAGAACAAGTGCAGCAGGA 58.402 50.000 0.00 0.00 0.00 3.86
238 251 0.823356 TGGGGAAGAACAAGTGCAGC 60.823 55.000 0.00 0.00 0.00 5.25
306 319 0.393077 CCCAATGGGCGTAGACTAGG 59.607 60.000 4.89 0.00 35.35 3.02
342 355 2.352651 CTGTGGTGATAATGAGGCGTTG 59.647 50.000 0.00 0.00 0.00 4.10
355 369 1.150536 GCCCCTTTGACTGTGGTGA 59.849 57.895 0.00 0.00 0.00 4.02
361 375 0.695347 AGAGAAGGCCCCTTTGACTG 59.305 55.000 0.00 0.00 36.26 3.51
362 376 0.695347 CAGAGAAGGCCCCTTTGACT 59.305 55.000 0.00 0.00 36.26 3.41
363 377 0.402121 ACAGAGAAGGCCCCTTTGAC 59.598 55.000 16.90 0.00 36.26 3.18
364 378 2.038863 TACAGAGAAGGCCCCTTTGA 57.961 50.000 16.90 2.35 36.26 2.69
365 379 2.040412 AGTTACAGAGAAGGCCCCTTTG 59.960 50.000 0.00 5.37 36.26 2.77
366 380 2.040412 CAGTTACAGAGAAGGCCCCTTT 59.960 50.000 0.00 0.00 36.26 3.11
367 381 1.630878 CAGTTACAGAGAAGGCCCCTT 59.369 52.381 0.00 0.00 39.23 3.95
368 382 1.280457 CAGTTACAGAGAAGGCCCCT 58.720 55.000 0.00 0.00 0.00 4.79
369 383 0.984995 ACAGTTACAGAGAAGGCCCC 59.015 55.000 0.00 0.00 0.00 5.80
370 384 1.946283 GCACAGTTACAGAGAAGGCCC 60.946 57.143 0.00 0.00 0.00 5.80
371 385 1.270839 TGCACAGTTACAGAGAAGGCC 60.271 52.381 0.00 0.00 0.00 5.19
372 386 2.169832 TGCACAGTTACAGAGAAGGC 57.830 50.000 0.00 0.00 0.00 4.35
373 387 3.733337 ACTTGCACAGTTACAGAGAAGG 58.267 45.455 0.00 0.00 27.32 3.46
407 421 2.899256 TGAAAATTTTCAGAGGCAGGGG 59.101 45.455 26.01 0.00 41.88 4.79
411 425 2.632512 GGGGTGAAAATTTTCAGAGGCA 59.367 45.455 29.34 8.53 46.80 4.75
412 426 2.028112 GGGGGTGAAAATTTTCAGAGGC 60.028 50.000 29.34 18.83 46.80 4.70
464 490 2.427095 GGGGAACAATAATGTGAGCCAC 59.573 50.000 0.00 0.00 40.46 5.01
641 689 1.340991 ACTGCACACAAGGACTTTGGT 60.341 47.619 2.08 0.00 41.25 3.67
722 779 6.352137 GGCCATTCCTCTTTACATCCAAATTT 60.352 38.462 0.00 0.00 0.00 1.82
745 802 3.262420 TGAAGAAGAAATGACGCTAGGC 58.738 45.455 0.00 0.00 0.00 3.93
747 804 4.180057 AGCTGAAGAAGAAATGACGCTAG 58.820 43.478 0.00 0.00 0.00 3.42
752 809 6.906659 TCATGAAAGCTGAAGAAGAAATGAC 58.093 36.000 0.00 0.00 0.00 3.06
753 810 7.230108 AGTTCATGAAAGCTGAAGAAGAAATGA 59.770 33.333 10.35 0.00 33.49 2.57
756 813 6.319658 ACAGTTCATGAAAGCTGAAGAAGAAA 59.680 34.615 25.01 0.00 33.49 2.52
810 867 4.644498 AGTTGAAATGCCAAGGAAAATGG 58.356 39.130 0.00 0.00 41.08 3.16
817 874 2.803956 CAGCAAAGTTGAAATGCCAAGG 59.196 45.455 0.00 0.00 40.93 3.61
828 885 3.594134 TCAAAAACCCACAGCAAAGTTG 58.406 40.909 0.00 0.00 0.00 3.16
836 893 5.348451 CAGTTCAAAGTTCAAAAACCCACAG 59.652 40.000 0.00 0.00 35.92 3.66
856 913 4.163078 ACAGGATGCAGATTACTAGCAGTT 59.837 41.667 0.00 0.00 42.53 3.16
895 954 8.935844 TGATTAGCTTGAAATAACTACAGTGTG 58.064 33.333 5.88 0.00 0.00 3.82
920 984 9.926751 CTACAGAAAGTAAATACATGATTGCTG 57.073 33.333 0.00 0.00 30.92 4.41
1051 1168 2.903798 ACAAACACATGCACAAAAGGG 58.096 42.857 0.00 0.00 0.00 3.95
1090 1207 4.882842 TGCATGTGTAGAAAGGACTACA 57.117 40.909 0.00 0.00 46.65 2.74
1261 1384 6.096036 CCTAGTCAACACAAGATCTGTACTG 58.904 44.000 0.00 0.00 36.10 2.74
1262 1385 5.336849 GCCTAGTCAACACAAGATCTGTACT 60.337 44.000 0.00 0.59 36.10 2.73
1263 1386 4.865365 GCCTAGTCAACACAAGATCTGTAC 59.135 45.833 0.00 0.00 36.10 2.90
1325 1451 9.477484 CCACTAACAGATACTACAAATCATACC 57.523 37.037 0.00 0.00 0.00 2.73
1344 1470 5.177696 GTGCTGCTAATATGCTACCACTAAC 59.822 44.000 0.00 0.00 0.00 2.34
1347 1501 3.389329 AGTGCTGCTAATATGCTACCACT 59.611 43.478 0.00 0.00 34.33 4.00
1483 1673 9.886132 AGTATTTGTATAAGAAAGATGAACGGT 57.114 29.630 0.00 0.00 0.00 4.83
1643 1835 0.318441 TCCCTGCAGAGTCAGTTTCG 59.682 55.000 17.39 0.00 32.32 3.46
1655 1847 0.184692 TTGTTGGTGTGATCCCTGCA 59.815 50.000 0.00 0.00 0.00 4.41
1676 1868 0.533032 GGCTCCTGTCTGTAGGTGTC 59.467 60.000 0.00 0.00 38.99 3.67
1688 1880 1.180029 CAATGACCTTTGGGCTCCTG 58.820 55.000 0.00 0.00 35.63 3.86
1796 1988 4.234530 ACTGAACAGAAAGCAGCAAATC 57.765 40.909 8.87 0.00 33.03 2.17
1858 2050 8.624776 AGAAATGGAAGTTCAGTTCTTGTAAAG 58.375 33.333 5.01 0.00 45.87 1.85
1950 2162 4.592942 AGATTCTGCATTTTCCAGTGCTA 58.407 39.130 0.00 0.00 41.78 3.49
1995 2207 4.690748 TGCAAGACAGTATGAGTTAAGCAC 59.309 41.667 0.00 0.00 39.69 4.40
2003 2215 8.024865 TGAAAATTGAATGCAAGACAGTATGAG 58.975 33.333 0.00 0.00 37.13 2.90
2005 2217 8.024865 TCTGAAAATTGAATGCAAGACAGTATG 58.975 33.333 0.00 0.00 38.97 2.39
2010 2222 7.041635 TCTTCTGAAAATTGAATGCAAGACA 57.958 32.000 0.00 0.00 37.45 3.41
2011 2223 7.359014 GCTTCTTCTGAAAATTGAATGCAAGAC 60.359 37.037 0.00 0.00 37.45 3.01
2012 2224 6.643770 GCTTCTTCTGAAAATTGAATGCAAGA 59.356 34.615 0.00 0.00 37.45 3.02
2013 2225 6.399669 CGCTTCTTCTGAAAATTGAATGCAAG 60.400 38.462 0.00 0.00 37.45 4.01
2014 2226 5.403166 CGCTTCTTCTGAAAATTGAATGCAA 59.597 36.000 0.00 0.00 38.60 4.08
2023 2235 1.909700 TGGGCGCTTCTTCTGAAAAT 58.090 45.000 7.64 0.00 0.00 1.82
2063 2275 1.902508 TGGAGCTGGTTGACCTTAGAG 59.097 52.381 0.00 0.00 36.82 2.43
2093 2305 4.199310 TCAGTTGTTCCTTGGTCTTCTTG 58.801 43.478 0.00 0.00 0.00 3.02
2116 2328 1.446792 CTTCGTGCCTCTGATGCGT 60.447 57.895 0.57 0.00 0.00 5.24
2156 2368 2.165167 CCCTGCTTCTTTGCTTCATCA 58.835 47.619 0.00 0.00 0.00 3.07
2201 2413 0.545309 TAAGCTGGCACTGGGACTCT 60.545 55.000 0.00 0.00 0.00 3.24
2207 2419 2.983433 CTCGATAAGCTGGCACTGG 58.017 57.895 0.00 0.00 0.00 4.00
2220 2432 1.036481 TCTGCTGCTGAGAGCTCGAT 61.036 55.000 8.37 0.00 42.97 3.59
2408 2620 1.819632 CTTGGCACGGGCTGTATCC 60.820 63.158 10.74 4.21 40.87 2.59
2441 2653 1.077068 CCCCTCGAGCTCAGAGTCT 60.077 63.158 24.23 0.00 34.08 3.24
2500 2712 5.689383 TTCACTGACATTTACTTTCAGGC 57.311 39.130 3.09 0.00 41.00 4.85
2556 2768 1.601759 GCAGCTTGGCCTCAGTTGA 60.602 57.895 19.18 0.00 0.00 3.18
2657 2869 2.490115 AGGTTTAGACTCACTGAGCTCG 59.510 50.000 9.64 6.63 32.04 5.03
2660 2872 2.416162 CCGAGGTTTAGACTCACTGAGC 60.416 54.545 5.92 0.00 34.66 4.26
2676 2888 2.279784 GAGCGATGCTTCCCGAGG 60.280 66.667 0.00 0.00 39.88 4.63
2683 2895 2.170187 AGATCTTCCTTGAGCGATGCTT 59.830 45.455 0.00 0.00 39.88 3.91
2694 2906 5.490159 CTGAGCTTTCTTCAGATCTTCCTT 58.510 41.667 0.00 0.00 33.65 3.36
2714 2926 2.877097 TTTCATTACCTGCAGCCTGA 57.123 45.000 8.66 4.97 0.00 3.86
2796 3008 0.794605 GGATGCGCGCTCTTTTTCAC 60.795 55.000 33.29 11.70 0.00 3.18
2809 3021 1.065551 TGACGTCACTGATAGGATGCG 59.934 52.381 15.76 0.00 0.00 4.73
2816 3028 3.195610 AGCTTCCATTGACGTCACTGATA 59.804 43.478 30.78 18.44 0.00 2.15
2818 3030 1.344438 AGCTTCCATTGACGTCACTGA 59.656 47.619 30.78 19.01 0.00 3.41
2855 3067 2.662006 TCCTCAAGTGCTCAATCTCG 57.338 50.000 0.00 0.00 0.00 4.04
2871 3083 2.270205 CACCTCAAGCGCCATCCT 59.730 61.111 2.29 0.00 0.00 3.24
2942 3154 5.128919 ACATTCTCCAGCATCTCATAAACC 58.871 41.667 0.00 0.00 0.00 3.27
2945 3157 5.619132 TGACATTCTCCAGCATCTCATAA 57.381 39.130 0.00 0.00 0.00 1.90
3022 3234 2.172372 GCTGCCATGAGCTCGTCAG 61.172 63.158 16.64 16.64 44.23 3.51
3074 3286 0.036732 GCCCATCTGACCTGTGAACA 59.963 55.000 0.00 0.00 0.00 3.18
3075 3287 0.326264 AGCCCATCTGACCTGTGAAC 59.674 55.000 0.00 0.00 0.00 3.18
3089 3301 1.246056 GCTGCATTTCACTCAGCCCA 61.246 55.000 0.00 0.00 45.34 5.36
3110 3322 1.188219 TCAGCTTCGCCTCCAACTCT 61.188 55.000 0.00 0.00 0.00 3.24
3114 3326 0.324614 TTCATCAGCTTCGCCTCCAA 59.675 50.000 0.00 0.00 0.00 3.53
3143 3355 2.202610 TTGAGCTCCGCGATGTCG 60.203 61.111 8.23 0.00 43.27 4.35
3542 3763 1.443194 CCCGTTGTACTCCGTGTCG 60.443 63.158 0.00 0.00 0.00 4.35
3676 3897 0.321564 TGAACGGTCTCATGGGCTTG 60.322 55.000 0.33 0.00 0.00 4.01
3698 3919 3.009916 TCACCTTACCTTACCTCTCGTCT 59.990 47.826 0.00 0.00 0.00 4.18
3719 3940 7.118971 GCTGAATCTGGTTATCATCTGGTTATC 59.881 40.741 0.00 0.00 0.00 1.75
3721 3942 6.291377 GCTGAATCTGGTTATCATCTGGTTA 58.709 40.000 0.00 0.00 0.00 2.85
3723 3944 4.445448 GGCTGAATCTGGTTATCATCTGGT 60.445 45.833 0.00 0.00 0.00 4.00
3724 3945 4.070716 GGCTGAATCTGGTTATCATCTGG 58.929 47.826 0.00 0.00 0.00 3.86
3725 3946 4.711399 TGGCTGAATCTGGTTATCATCTG 58.289 43.478 0.00 0.00 0.00 2.90
3732 3959 2.698855 GCTCTGGCTGAATCTGGTTA 57.301 50.000 0.00 0.00 35.22 2.85
3753 3980 4.013728 GACTACCACTCTGATCACTGACT 58.986 47.826 0.00 0.00 0.00 3.41
3769 3996 3.380954 GCACCAACCTCTACTAGACTACC 59.619 52.174 0.00 0.00 0.00 3.18
3788 4015 2.169832 TTTCTGCTACTCACCAGCAC 57.830 50.000 0.00 0.00 43.90 4.40
3818 4045 4.078805 TCATCCCTAGTAACCCTAGAAGCA 60.079 45.833 0.00 0.00 45.21 3.91
3835 4062 3.530928 TTCCATTCCATCCATCATCCC 57.469 47.619 0.00 0.00 0.00 3.85
3879 4111 6.551736 TCTCTTTCAACTAACTGCAAACAAC 58.448 36.000 0.00 0.00 0.00 3.32
3922 4154 2.704596 CTCCAGGATCTCATGACACCAT 59.295 50.000 0.00 0.00 0.00 3.55
3975 4207 6.491394 TCTTGCAACATACAGTAACAAACAC 58.509 36.000 0.00 0.00 0.00 3.32
4061 4295 8.133627 GGGACAGAATGAATATTATGCATATGC 58.866 37.037 21.09 21.09 38.71 3.14
4063 4297 9.758021 TTGGGACAGAATGAATATTATGCATAT 57.242 29.630 7.36 0.82 42.39 1.78
4067 4308 7.363268 GGGATTGGGACAGAATGAATATTATGC 60.363 40.741 0.00 0.00 42.39 3.14
4076 4317 0.546122 CCGGGATTGGGACAGAATGA 59.454 55.000 0.00 0.00 42.39 2.57
4080 4321 2.184088 TTATCCGGGATTGGGACAGA 57.816 50.000 15.98 0.00 42.39 3.41
4084 4325 2.054799 CTCCTTTATCCGGGATTGGGA 58.945 52.381 15.98 17.26 38.10 4.37
4085 4326 1.073923 CCTCCTTTATCCGGGATTGGG 59.926 57.143 15.98 14.20 0.00 4.12
4086 4327 2.054799 TCCTCCTTTATCCGGGATTGG 58.945 52.381 15.98 14.59 0.00 3.16
4088 4329 2.644798 CCATCCTCCTTTATCCGGGATT 59.355 50.000 15.98 0.00 34.94 3.01
4089 4330 2.269940 CCATCCTCCTTTATCCGGGAT 58.730 52.381 15.04 15.04 37.28 3.85
4090 4331 1.061657 ACCATCCTCCTTTATCCGGGA 60.062 52.381 0.00 0.00 0.00 5.14
4100 4373 3.136641 ACCTATCACAACCATCCTCCT 57.863 47.619 0.00 0.00 0.00 3.69
4105 4378 2.097466 CGCCAAACCTATCACAACCATC 59.903 50.000 0.00 0.00 0.00 3.51
4107 4380 1.072489 TCGCCAAACCTATCACAACCA 59.928 47.619 0.00 0.00 0.00 3.67
4129 4402 5.476599 TGGACATTATGTTCTTCTGGTTTGG 59.523 40.000 5.15 0.00 0.00 3.28
4133 4406 6.600822 CAGAATGGACATTATGTTCTTCTGGT 59.399 38.462 23.24 1.51 37.41 4.00
4134 4407 7.024340 CAGAATGGACATTATGTTCTTCTGG 57.976 40.000 23.24 13.38 37.41 3.86
4143 4416 3.243301 GCAGGCACAGAATGGACATTATG 60.243 47.826 15.75 15.75 43.49 1.90
4144 4417 2.954318 GCAGGCACAGAATGGACATTAT 59.046 45.455 0.00 0.00 43.62 1.28
4145 4418 2.290832 TGCAGGCACAGAATGGACATTA 60.291 45.455 0.00 0.00 43.62 1.90
4146 4419 1.180029 GCAGGCACAGAATGGACATT 58.820 50.000 0.00 0.00 43.62 2.71
4147 4420 0.038599 TGCAGGCACAGAATGGACAT 59.961 50.000 0.00 0.00 43.62 3.06
4148 4421 0.178995 TTGCAGGCACAGAATGGACA 60.179 50.000 0.00 0.00 43.62 4.02
4149 4422 0.961019 TTTGCAGGCACAGAATGGAC 59.039 50.000 0.00 0.00 43.62 4.02
4150 4423 1.202915 TCTTTGCAGGCACAGAATGGA 60.203 47.619 7.61 0.00 43.62 3.41
4151 4424 1.250328 TCTTTGCAGGCACAGAATGG 58.750 50.000 7.61 0.00 43.62 3.16
4177 4450 4.114794 CCAACCTGAACTTTCTTTTGCAG 58.885 43.478 0.00 0.00 0.00 4.41
4199 4472 7.813852 CTGTTTACAGGATTACTCACTGTAC 57.186 40.000 3.50 0.00 44.65 2.90
4216 4489 6.144078 ACTTCCAAACCATCAACTGTTTAC 57.856 37.500 0.00 0.00 33.57 2.01
4226 4502 1.546029 GCCCTCAACTTCCAAACCATC 59.454 52.381 0.00 0.00 0.00 3.51
4249 4525 4.046938 TCTAGCTAATCAGGTTTCTGCG 57.953 45.455 0.00 0.00 40.69 5.18
4268 4544 6.282199 ACAATTTACTGTCATCGTACCTCT 57.718 37.500 0.00 0.00 0.00 3.69
4288 4564 3.196463 CCACAAATTGCTTGCTTGACAA 58.804 40.909 0.00 0.00 38.75 3.18
4296 4572 2.886862 TCACACCCACAAATTGCTTG 57.113 45.000 0.00 0.00 41.19 4.01
4297 4573 3.134442 ACATTCACACCCACAAATTGCTT 59.866 39.130 0.00 0.00 0.00 3.91
4298 4574 2.699846 ACATTCACACCCACAAATTGCT 59.300 40.909 0.00 0.00 0.00 3.91
4329 4605 1.134310 TGGCACCAGATGATAGCAGTG 60.134 52.381 0.00 0.00 0.00 3.66
4344 4620 6.072175 TGGTTGATCTATGTTACTTTTGGCAC 60.072 38.462 0.00 0.00 0.00 5.01
4373 4649 2.250939 CGCAAGCCGTTTGACAGGA 61.251 57.895 0.00 0.00 39.21 3.86
4383 4659 1.254570 GTTACTATCGTTCGCAAGCCG 59.745 52.381 0.00 0.00 38.61 5.52
4414 4690 1.895798 TGATATGATCTGCTCGGGGAC 59.104 52.381 0.00 0.00 0.00 4.46
4415 4691 2.174360 CTGATATGATCTGCTCGGGGA 58.826 52.381 0.00 0.00 0.00 4.81
4416 4692 1.206610 CCTGATATGATCTGCTCGGGG 59.793 57.143 0.00 0.00 31.66 5.73
4417 4693 1.898472 ACCTGATATGATCTGCTCGGG 59.102 52.381 12.53 12.53 39.59 5.14
4418 4694 4.790765 TTACCTGATATGATCTGCTCGG 57.209 45.455 0.00 0.00 0.00 4.63
4419 4695 8.763049 TTTTATTACCTGATATGATCTGCTCG 57.237 34.615 0.00 0.00 0.00 5.03
4444 4720 8.551205 CGAGTATGTCTTGCATTTATTACACAT 58.449 33.333 0.00 0.00 38.94 3.21
4445 4721 7.905126 CGAGTATGTCTTGCATTTATTACACA 58.095 34.615 0.00 0.00 38.94 3.72
4458 4734 1.713597 TGCACAGCGAGTATGTCTTG 58.286 50.000 0.00 0.00 0.00 3.02
4459 4735 2.680312 ATGCACAGCGAGTATGTCTT 57.320 45.000 0.00 0.00 0.00 3.01
4460 4736 2.952310 TCTATGCACAGCGAGTATGTCT 59.048 45.455 0.00 0.00 0.00 3.41
4461 4737 3.355626 TCTATGCACAGCGAGTATGTC 57.644 47.619 0.00 0.00 0.00 3.06
4462 4738 3.381590 TCTTCTATGCACAGCGAGTATGT 59.618 43.478 0.00 0.00 0.00 2.29
4463 4739 3.969899 TCTTCTATGCACAGCGAGTATG 58.030 45.455 0.00 0.00 0.00 2.39
4464 4740 4.655762 TTCTTCTATGCACAGCGAGTAT 57.344 40.909 0.00 0.00 0.00 2.12
4465 4741 4.655762 ATTCTTCTATGCACAGCGAGTA 57.344 40.909 0.00 0.00 0.00 2.59
4466 4742 3.533606 ATTCTTCTATGCACAGCGAGT 57.466 42.857 0.00 0.00 0.00 4.18
4467 4743 3.428198 GCTATTCTTCTATGCACAGCGAG 59.572 47.826 0.00 0.00 0.00 5.03
4468 4744 3.181476 TGCTATTCTTCTATGCACAGCGA 60.181 43.478 0.00 0.00 0.00 4.93
4469 4745 3.126073 TGCTATTCTTCTATGCACAGCG 58.874 45.455 0.00 0.00 0.00 5.18
4470 4746 5.008415 ACATTGCTATTCTTCTATGCACAGC 59.992 40.000 0.00 0.00 33.13 4.40
4471 4747 6.615264 ACATTGCTATTCTTCTATGCACAG 57.385 37.500 0.00 0.00 33.13 3.66
4472 4748 6.707608 CCTACATTGCTATTCTTCTATGCACA 59.292 38.462 0.00 0.00 33.13 4.57
4473 4749 6.148480 CCCTACATTGCTATTCTTCTATGCAC 59.852 42.308 0.00 0.00 33.13 4.57
4474 4750 6.233434 CCCTACATTGCTATTCTTCTATGCA 58.767 40.000 0.00 0.00 0.00 3.96
4475 4751 5.123027 GCCCTACATTGCTATTCTTCTATGC 59.877 44.000 0.00 0.00 0.00 3.14
4476 4752 6.471146 AGCCCTACATTGCTATTCTTCTATG 58.529 40.000 0.00 0.00 35.69 2.23
4477 4753 6.694445 AGCCCTACATTGCTATTCTTCTAT 57.306 37.500 0.00 0.00 35.69 1.98
4478 4754 6.014499 GGTAGCCCTACATTGCTATTCTTCTA 60.014 42.308 7.66 0.00 41.71 2.10
4479 4755 5.221742 GGTAGCCCTACATTGCTATTCTTCT 60.222 44.000 7.66 0.00 41.71 2.85
4480 4756 4.998033 GGTAGCCCTACATTGCTATTCTTC 59.002 45.833 7.66 0.00 41.71 2.87
4481 4757 4.503296 CGGTAGCCCTACATTGCTATTCTT 60.503 45.833 7.66 0.00 41.71 2.52
4482 4758 3.006967 CGGTAGCCCTACATTGCTATTCT 59.993 47.826 7.66 0.00 41.71 2.40
4483 4759 3.326747 CGGTAGCCCTACATTGCTATTC 58.673 50.000 7.66 0.00 41.71 1.75
4484 4760 2.038557 CCGGTAGCCCTACATTGCTATT 59.961 50.000 7.66 0.00 41.71 1.73
4485 4761 1.623811 CCGGTAGCCCTACATTGCTAT 59.376 52.381 7.66 0.00 41.71 2.97
4486 4762 1.045407 CCGGTAGCCCTACATTGCTA 58.955 55.000 7.66 0.00 39.00 3.49
4487 4763 1.830145 CCGGTAGCCCTACATTGCT 59.170 57.895 7.66 0.00 41.57 3.91
4488 4764 1.892391 GCCGGTAGCCCTACATTGC 60.892 63.158 1.90 3.35 37.78 3.56
4489 4765 1.594293 CGCCGGTAGCCCTACATTG 60.594 63.158 1.90 0.00 38.78 2.82
4490 4766 2.803817 CCGCCGGTAGCCCTACATT 61.804 63.158 1.90 0.00 38.78 2.71
4491 4767 3.231736 CCGCCGGTAGCCCTACAT 61.232 66.667 1.90 0.00 38.78 2.29
4537 4813 2.996168 ATTGTGATCTAGCCGCCGCC 62.996 60.000 0.00 0.00 34.57 6.13
4538 4814 1.595382 ATTGTGATCTAGCCGCCGC 60.595 57.895 0.00 0.00 0.00 6.53
4539 4815 1.224069 CCATTGTGATCTAGCCGCCG 61.224 60.000 0.00 0.00 0.00 6.46
4540 4816 0.179045 ACCATTGTGATCTAGCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
4541 4817 2.408050 CTACCATTGTGATCTAGCCGC 58.592 52.381 0.00 0.00 0.00 6.53
4542 4818 2.628178 TCCTACCATTGTGATCTAGCCG 59.372 50.000 0.00 0.00 0.00 5.52
4543 4819 4.345257 TCTTCCTACCATTGTGATCTAGCC 59.655 45.833 0.00 0.00 0.00 3.93
4544 4820 5.537300 TCTTCCTACCATTGTGATCTAGC 57.463 43.478 0.00 0.00 0.00 3.42
4545 4821 7.060383 ACATCTTCCTACCATTGTGATCTAG 57.940 40.000 0.00 0.00 0.00 2.43
4546 4822 6.239036 CGACATCTTCCTACCATTGTGATCTA 60.239 42.308 0.00 0.00 0.00 1.98
4547 4823 5.452496 CGACATCTTCCTACCATTGTGATCT 60.452 44.000 0.00 0.00 0.00 2.75
4548 4824 4.747108 CGACATCTTCCTACCATTGTGATC 59.253 45.833 0.00 0.00 0.00 2.92
4549 4825 4.405680 TCGACATCTTCCTACCATTGTGAT 59.594 41.667 0.00 0.00 0.00 3.06
4550 4826 3.767131 TCGACATCTTCCTACCATTGTGA 59.233 43.478 0.00 0.00 0.00 3.58
4551 4827 3.865745 GTCGACATCTTCCTACCATTGTG 59.134 47.826 11.55 0.00 0.00 3.33
4552 4828 3.513912 TGTCGACATCTTCCTACCATTGT 59.486 43.478 15.76 0.00 0.00 2.71
4553 4829 3.865745 GTGTCGACATCTTCCTACCATTG 59.134 47.826 23.12 0.00 0.00 2.82
4554 4830 3.118738 GGTGTCGACATCTTCCTACCATT 60.119 47.826 23.12 0.00 0.00 3.16
4555 4831 2.431057 GGTGTCGACATCTTCCTACCAT 59.569 50.000 23.12 0.00 0.00 3.55
4556 4832 1.822990 GGTGTCGACATCTTCCTACCA 59.177 52.381 23.12 0.00 0.00 3.25
4557 4833 1.822990 TGGTGTCGACATCTTCCTACC 59.177 52.381 27.93 18.47 0.00 3.18
4558 4834 3.802948 ATGGTGTCGACATCTTCCTAC 57.197 47.619 27.93 9.94 0.00 3.18
4559 4835 4.023980 AGAATGGTGTCGACATCTTCCTA 58.976 43.478 27.93 10.73 0.00 2.94
4560 4836 2.834549 AGAATGGTGTCGACATCTTCCT 59.165 45.455 27.93 13.80 0.00 3.36
4561 4837 3.190874 GAGAATGGTGTCGACATCTTCC 58.809 50.000 27.93 20.87 0.00 3.46
4562 4838 3.849911 TGAGAATGGTGTCGACATCTTC 58.150 45.455 27.93 24.81 0.00 2.87
4563 4839 3.961480 TGAGAATGGTGTCGACATCTT 57.039 42.857 27.93 19.84 0.00 2.40
4564 4840 3.961480 TTGAGAATGGTGTCGACATCT 57.039 42.857 27.93 22.34 0.00 2.90
4565 4841 5.356882 TTTTTGAGAATGGTGTCGACATC 57.643 39.130 23.12 22.57 0.00 3.06
4588 4864 9.418045 TGTCGACATCTTTTTCTTTTTCTTTTT 57.582 25.926 15.76 0.00 0.00 1.94
4589 4865 8.860128 GTGTCGACATCTTTTTCTTTTTCTTTT 58.140 29.630 23.12 0.00 0.00 2.27
4590 4866 7.488150 GGTGTCGACATCTTTTTCTTTTTCTTT 59.512 33.333 23.12 0.00 0.00 2.52
4591 4867 6.972901 GGTGTCGACATCTTTTTCTTTTTCTT 59.027 34.615 23.12 0.00 0.00 2.52
4592 4868 6.495706 GGTGTCGACATCTTTTTCTTTTTCT 58.504 36.000 23.12 0.00 0.00 2.52
4593 4869 5.395486 CGGTGTCGACATCTTTTTCTTTTTC 59.605 40.000 25.40 5.92 39.00 2.29
4594 4870 5.065474 TCGGTGTCGACATCTTTTTCTTTTT 59.935 36.000 25.40 0.00 40.88 1.94
4595 4871 4.573201 TCGGTGTCGACATCTTTTTCTTTT 59.427 37.500 25.40 0.00 40.88 2.27
4596 4872 4.124238 TCGGTGTCGACATCTTTTTCTTT 58.876 39.130 25.40 0.00 40.88 2.52
4597 4873 3.724374 TCGGTGTCGACATCTTTTTCTT 58.276 40.909 25.40 0.00 40.88 2.52
4598 4874 3.380479 TCGGTGTCGACATCTTTTTCT 57.620 42.857 25.40 0.00 40.88 2.52
4610 4886 1.361668 CTGAAGGGCAATCGGTGTCG 61.362 60.000 0.00 0.00 29.99 4.35
4611 4887 1.026718 CCTGAAGGGCAATCGGTGTC 61.027 60.000 0.00 0.00 0.00 3.67
4612 4888 1.002134 CCTGAAGGGCAATCGGTGT 60.002 57.895 0.00 0.00 0.00 4.16
4613 4889 3.909662 CCTGAAGGGCAATCGGTG 58.090 61.111 0.00 0.00 0.00 4.94
4622 4898 1.528129 GTCACTTGAAGCCTGAAGGG 58.472 55.000 0.00 0.00 35.18 3.95
4623 4899 1.528129 GGTCACTTGAAGCCTGAAGG 58.472 55.000 0.00 0.00 38.53 3.46
4624 4900 1.202806 TGGGTCACTTGAAGCCTGAAG 60.203 52.381 0.00 0.00 35.29 3.02
4625 4901 0.843309 TGGGTCACTTGAAGCCTGAA 59.157 50.000 0.00 0.00 35.29 3.02
4626 4902 1.003580 GATGGGTCACTTGAAGCCTGA 59.996 52.381 0.00 0.00 35.29 3.86
4627 4903 1.457346 GATGGGTCACTTGAAGCCTG 58.543 55.000 0.00 0.00 35.29 4.85
4628 4904 0.329596 GGATGGGTCACTTGAAGCCT 59.670 55.000 0.00 0.00 35.29 4.58
4629 4905 0.038166 TGGATGGGTCACTTGAAGCC 59.962 55.000 0.00 0.00 34.81 4.35
4630 4906 1.457346 CTGGATGGGTCACTTGAAGC 58.543 55.000 0.00 0.00 0.00 3.86
4631 4907 1.352352 ACCTGGATGGGTCACTTGAAG 59.648 52.381 0.00 0.00 41.11 3.02
4632 4908 1.444933 ACCTGGATGGGTCACTTGAA 58.555 50.000 0.00 0.00 41.11 2.69
4633 4909 1.444933 AACCTGGATGGGTCACTTGA 58.555 50.000 0.00 0.00 38.87 3.02
4634 4910 3.433306 TTAACCTGGATGGGTCACTTG 57.567 47.619 0.00 0.00 38.87 3.16
4635 4911 3.397955 AGTTTAACCTGGATGGGTCACTT 59.602 43.478 0.00 0.00 38.87 3.16
4636 4912 2.986728 AGTTTAACCTGGATGGGTCACT 59.013 45.455 0.00 0.00 38.87 3.41
4637 4913 3.081804 CAGTTTAACCTGGATGGGTCAC 58.918 50.000 0.00 0.00 38.87 3.67
4638 4914 2.554344 GCAGTTTAACCTGGATGGGTCA 60.554 50.000 0.00 0.00 38.87 4.02
4639 4915 2.092323 GCAGTTTAACCTGGATGGGTC 58.908 52.381 0.00 0.00 38.87 4.46
4640 4916 1.427368 TGCAGTTTAACCTGGATGGGT 59.573 47.619 0.00 0.00 42.05 4.51
4641 4917 2.094675 CTGCAGTTTAACCTGGATGGG 58.905 52.381 5.25 0.00 41.11 4.00
4642 4918 1.474077 GCTGCAGTTTAACCTGGATGG 59.526 52.381 16.64 0.00 42.93 3.51
4643 4919 2.161855 TGCTGCAGTTTAACCTGGATG 58.838 47.619 16.64 0.00 32.03 3.51
4644 4920 2.584835 TGCTGCAGTTTAACCTGGAT 57.415 45.000 16.64 0.00 32.03 3.41
4645 4921 2.584835 ATGCTGCAGTTTAACCTGGA 57.415 45.000 16.64 0.00 32.92 3.86
4646 4922 2.684881 CCTATGCTGCAGTTTAACCTGG 59.315 50.000 16.64 3.74 32.92 4.45
4647 4923 2.098117 GCCTATGCTGCAGTTTAACCTG 59.902 50.000 16.64 0.00 33.18 4.00
4648 4924 2.369394 GCCTATGCTGCAGTTTAACCT 58.631 47.619 16.64 0.00 33.53 3.50
4649 4925 1.405463 GGCCTATGCTGCAGTTTAACC 59.595 52.381 16.64 6.81 37.74 2.85
4650 4926 1.405463 GGGCCTATGCTGCAGTTTAAC 59.595 52.381 16.64 0.00 37.74 2.01
4651 4927 1.684869 GGGGCCTATGCTGCAGTTTAA 60.685 52.381 16.64 0.00 37.74 1.52
4652 4928 0.106719 GGGGCCTATGCTGCAGTTTA 60.107 55.000 16.64 6.58 37.74 2.01
4653 4929 1.380380 GGGGCCTATGCTGCAGTTT 60.380 57.895 16.64 5.66 37.74 2.66
4654 4930 2.276740 GGGGCCTATGCTGCAGTT 59.723 61.111 16.64 6.05 37.74 3.16
4655 4931 3.813724 GGGGGCCTATGCTGCAGT 61.814 66.667 16.64 0.00 37.74 4.40
4656 4932 3.786884 CTGGGGGCCTATGCTGCAG 62.787 68.421 10.11 10.11 37.74 4.41
4657 4933 3.812544 CTGGGGGCCTATGCTGCA 61.813 66.667 4.13 4.13 37.74 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.