Multiple sequence alignment - TraesCS1B01G078700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G078700 chr1B 100.000 3179 0 0 1 3179 61616049 61612871 0.000000e+00 5871.0
1 TraesCS1B01G078700 chr1B 90.854 164 13 2 578 741 33564002 33564163 5.340000e-53 219.0
2 TraesCS1B01G078700 chr1B 91.597 119 7 3 2362 2479 15616827 15616943 9.130000e-36 161.0
3 TraesCS1B01G078700 chr1B 84.000 125 17 1 3019 3143 611773166 611773045 2.000000e-22 117.0
4 TraesCS1B01G078700 chr1D 92.027 1643 71 27 749 2361 41566794 41565182 0.000000e+00 2254.0
5 TraesCS1B01G078700 chr1D 90.305 361 28 4 2651 3009 41565105 41564750 1.730000e-127 466.0
6 TraesCS1B01G078700 chr1D 90.598 351 14 6 3 347 41568966 41568629 6.260000e-122 448.0
7 TraesCS1B01G078700 chr1D 94.737 247 13 0 339 585 41567039 41566793 4.970000e-103 385.0
8 TraesCS1B01G078700 chr1D 85.156 128 13 4 3013 3139 418330236 418330358 3.330000e-25 126.0
9 TraesCS1B01G078700 chr1A 90.290 1483 66 30 750 2197 41368627 41367188 0.000000e+00 1869.0
10 TraesCS1B01G078700 chr1A 85.601 632 50 22 3 595 41369326 41368697 2.690000e-175 625.0
11 TraesCS1B01G078700 chr1A 90.909 121 9 2 2361 2481 546033791 546033673 9.130000e-36 161.0
12 TraesCS1B01G078700 chr1A 90.000 100 6 1 2739 2838 41366746 41366651 3.330000e-25 126.0
13 TraesCS1B01G078700 chr1A 84.906 106 8 4 2468 2569 41367007 41366906 2.020000e-17 100.0
14 TraesCS1B01G078700 chr3D 89.130 184 17 3 584 767 410670224 410670044 3.190000e-55 226.0
15 TraesCS1B01G078700 chr3B 91.925 161 12 1 584 744 263271164 263271005 1.150000e-54 224.0
16 TraesCS1B01G078700 chr7B 88.587 184 19 2 561 744 131081730 131081549 4.130000e-54 222.0
17 TraesCS1B01G078700 chr7B 90.533 169 15 1 576 744 353650355 353650522 4.130000e-54 222.0
18 TraesCS1B01G078700 chr6B 91.304 161 13 1 584 744 149526896 149527055 5.340000e-53 219.0
19 TraesCS1B01G078700 chr6B 93.043 115 8 0 2360 2474 129854393 129854507 5.450000e-38 169.0
20 TraesCS1B01G078700 chr6B 92.982 114 8 0 2359 2472 156651551 156651438 1.960000e-37 167.0
21 TraesCS1B01G078700 chr6B 90.984 122 8 3 2364 2484 599445618 599445737 9.130000e-36 161.0
22 TraesCS1B01G078700 chr6B 83.000 100 14 3 435 532 633901742 633901644 1.570000e-13 87.9
23 TraesCS1B01G078700 chr5D 91.304 161 13 1 584 744 539915852 539916011 5.340000e-53 219.0
24 TraesCS1B01G078700 chr5D 75.737 441 83 12 1611 2051 540000859 540000443 1.930000e-47 200.0
25 TraesCS1B01G078700 chr5D 86.179 123 14 1 3020 3142 170232273 170232154 2.570000e-26 130.0
26 TraesCS1B01G078700 chr2D 90.909 165 12 3 581 744 274854675 274854513 5.340000e-53 219.0
27 TraesCS1B01G078700 chr2D 91.200 125 10 1 2347 2470 14895087 14895211 5.450000e-38 169.0
28 TraesCS1B01G078700 chr2D 86.667 105 13 1 435 539 203449377 203449274 7.210000e-22 115.0
29 TraesCS1B01G078700 chr2A 88.889 180 15 5 584 763 460904003 460904177 1.920000e-52 217.0
30 TraesCS1B01G078700 chr2A 85.000 120 15 1 3020 3139 112737792 112737908 5.570000e-23 119.0
31 TraesCS1B01G078700 chr2A 84.167 120 16 1 3020 3139 709587971 709587855 2.590000e-21 113.0
32 TraesCS1B01G078700 chr2A 77.703 148 22 5 2736 2881 669882675 669882813 2.630000e-11 80.5
33 TraesCS1B01G078700 chr5B 80.645 217 42 0 1835 2051 682225277 682225061 5.450000e-38 169.0
34 TraesCS1B01G078700 chr5B 92.437 119 6 3 2359 2476 685440800 685440684 1.960000e-37 167.0
35 TraesCS1B01G078700 chr5B 91.667 120 7 3 2359 2476 519183432 519183550 2.540000e-36 163.0
36 TraesCS1B01G078700 chr5B 90.566 106 8 2 1611 1715 682225471 682225367 4.280000e-29 139.0
37 TraesCS1B01G078700 chr5B 84.800 125 15 2 3020 3144 28010230 28010110 4.310000e-24 122.0
38 TraesCS1B01G078700 chr3A 92.982 114 8 0 2359 2472 726761740 726761627 1.960000e-37 167.0
39 TraesCS1B01G078700 chr4A 80.184 217 43 0 1835 2051 627970012 627969796 2.540000e-36 163.0
40 TraesCS1B01G078700 chr4A 89.623 106 9 2 1611 1715 627970212 627970108 1.990000e-27 134.0
41 TraesCS1B01G078700 chr6D 86.777 121 13 1 3020 3140 353652926 353652809 7.160000e-27 132.0
42 TraesCS1B01G078700 chr6D 88.235 68 8 0 1991 2058 255621886 255621819 7.310000e-12 82.4
43 TraesCS1B01G078700 chr2B 86.667 120 13 1 3020 3139 52117171 52117055 2.570000e-26 130.0
44 TraesCS1B01G078700 chr7A 83.740 123 17 1 3020 3142 634330177 634330296 2.590000e-21 113.0
45 TraesCS1B01G078700 chr5A 79.310 116 18 5 435 545 683339373 683339259 3.400000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G078700 chr1B 61612871 61616049 3178 True 5871.00 5871 100.00000 1 3179 1 chr1B.!!$R1 3178
1 TraesCS1B01G078700 chr1D 41564750 41568966 4216 True 888.25 2254 91.91675 3 3009 4 chr1D.!!$R1 3006
2 TraesCS1B01G078700 chr1A 41366651 41369326 2675 True 680.00 1869 87.69925 3 2838 4 chr1A.!!$R2 2835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 2400 0.032416 TTAGGAACGGAGGGAGGGAG 60.032 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 4195 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 102 4.906065 AGCCACTGTGCATAATTATGTG 57.094 40.909 23.14 14.30 36.11 3.21
96 103 4.272489 AGCCACTGTGCATAATTATGTGT 58.728 39.130 23.14 15.02 36.11 3.72
98 105 5.185635 AGCCACTGTGCATAATTATGTGTTT 59.814 36.000 23.14 5.42 36.11 2.83
99 106 5.868801 GCCACTGTGCATAATTATGTGTTTT 59.131 36.000 23.14 6.33 36.11 2.43
502 2149 5.351458 ACTCGTTTTAGTCCGTTTGTACTT 58.649 37.500 0.00 0.00 0.00 2.24
546 2193 8.463930 AACATCTTGTAATTTGGAACAGAGAA 57.536 30.769 0.00 0.00 42.39 2.87
613 2266 7.927048 CCCCCGTTCTTAAATATAAGTCTTTG 58.073 38.462 0.00 0.00 39.65 2.77
643 2296 9.706691 ACATTTTATTATGGACTACATACGGAG 57.293 33.333 0.00 0.00 41.61 4.63
644 2297 8.656849 CATTTTATTATGGACTACATACGGAGC 58.343 37.037 0.00 0.00 41.61 4.70
645 2298 6.904463 TTATTATGGACTACATACGGAGCA 57.096 37.500 0.00 0.00 41.61 4.26
647 2300 5.601583 TTATGGACTACATACGGAGCAAA 57.398 39.130 0.00 0.00 41.61 3.68
648 2301 3.520290 TGGACTACATACGGAGCAAAG 57.480 47.619 0.00 0.00 0.00 2.77
650 2303 3.187700 GGACTACATACGGAGCAAAGTG 58.812 50.000 0.00 0.00 0.00 3.16
654 2307 2.688507 ACATACGGAGCAAAGTGAGTG 58.311 47.619 0.00 0.00 0.00 3.51
655 2308 2.299013 ACATACGGAGCAAAGTGAGTGA 59.701 45.455 0.00 0.00 0.00 3.41
657 2310 2.550830 ACGGAGCAAAGTGAGTGAAT 57.449 45.000 0.00 0.00 0.00 2.57
658 2311 2.417719 ACGGAGCAAAGTGAGTGAATC 58.582 47.619 0.00 0.00 0.00 2.52
659 2312 2.037772 ACGGAGCAAAGTGAGTGAATCT 59.962 45.455 0.00 0.00 0.00 2.40
661 2314 3.614616 CGGAGCAAAGTGAGTGAATCTAC 59.385 47.826 0.00 0.00 0.00 2.59
662 2315 4.569943 GGAGCAAAGTGAGTGAATCTACA 58.430 43.478 0.00 0.00 0.00 2.74
663 2316 4.390297 GGAGCAAAGTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
676 2329 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
677 2330 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
678 2331 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
688 2341 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
689 2342 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
705 2358 5.216566 CATCCGTTATGTGGTTTGTAGTG 57.783 43.478 0.00 0.00 0.00 2.74
706 2359 3.666274 TCCGTTATGTGGTTTGTAGTGG 58.334 45.455 0.00 0.00 0.00 4.00
707 2360 3.324268 TCCGTTATGTGGTTTGTAGTGGA 59.676 43.478 0.00 0.00 0.00 4.02
708 2361 4.066490 CCGTTATGTGGTTTGTAGTGGAA 58.934 43.478 0.00 0.00 0.00 3.53
709 2362 4.698304 CCGTTATGTGGTTTGTAGTGGAAT 59.302 41.667 0.00 0.00 0.00 3.01
710 2363 5.163794 CCGTTATGTGGTTTGTAGTGGAATC 60.164 44.000 0.00 0.00 0.00 2.52
711 2364 5.642063 CGTTATGTGGTTTGTAGTGGAATCT 59.358 40.000 0.00 0.00 0.00 2.40
712 2365 6.148811 CGTTATGTGGTTTGTAGTGGAATCTT 59.851 38.462 0.00 0.00 0.00 2.40
713 2366 7.308348 CGTTATGTGGTTTGTAGTGGAATCTTT 60.308 37.037 0.00 0.00 0.00 2.52
714 2367 9.005777 GTTATGTGGTTTGTAGTGGAATCTTTA 57.994 33.333 0.00 0.00 0.00 1.85
715 2368 6.870971 TGTGGTTTGTAGTGGAATCTTTAC 57.129 37.500 0.00 0.00 0.00 2.01
716 2369 6.358178 TGTGGTTTGTAGTGGAATCTTTACA 58.642 36.000 0.00 0.00 0.00 2.41
717 2370 6.261381 TGTGGTTTGTAGTGGAATCTTTACAC 59.739 38.462 0.00 0.00 35.43 2.90
718 2371 5.467399 TGGTTTGTAGTGGAATCTTTACACG 59.533 40.000 0.00 0.00 39.95 4.49
719 2372 5.106830 GGTTTGTAGTGGAATCTTTACACGG 60.107 44.000 0.00 0.00 39.95 4.94
720 2373 5.471556 TTGTAGTGGAATCTTTACACGGA 57.528 39.130 0.00 0.00 39.95 4.69
721 2374 4.813027 TGTAGTGGAATCTTTACACGGAC 58.187 43.478 0.00 1.54 39.95 4.79
722 2375 4.525487 TGTAGTGGAATCTTTACACGGACT 59.475 41.667 10.21 0.00 39.95 3.85
723 2376 4.618920 AGTGGAATCTTTACACGGACTT 57.381 40.909 0.00 0.00 39.95 3.01
724 2377 5.733620 AGTGGAATCTTTACACGGACTTA 57.266 39.130 0.00 0.00 39.95 2.24
725 2378 6.295719 AGTGGAATCTTTACACGGACTTAT 57.704 37.500 0.00 0.00 39.95 1.73
726 2379 7.414222 AGTGGAATCTTTACACGGACTTATA 57.586 36.000 0.00 0.00 39.95 0.98
727 2380 8.019656 AGTGGAATCTTTACACGGACTTATAT 57.980 34.615 0.00 0.00 39.95 0.86
728 2381 8.483758 AGTGGAATCTTTACACGGACTTATATT 58.516 33.333 0.00 0.00 39.95 1.28
729 2382 9.106070 GTGGAATCTTTACACGGACTTATATTT 57.894 33.333 0.00 0.00 0.00 1.40
735 2388 9.807649 TCTTTACACGGACTTATATTTAGGAAC 57.192 33.333 0.00 0.00 0.00 3.62
736 2389 8.633075 TTTACACGGACTTATATTTAGGAACG 57.367 34.615 0.00 0.00 0.00 3.95
737 2390 5.594926 ACACGGACTTATATTTAGGAACGG 58.405 41.667 0.00 0.00 0.00 4.44
738 2391 5.360714 ACACGGACTTATATTTAGGAACGGA 59.639 40.000 0.00 0.00 0.00 4.69
739 2392 5.919141 CACGGACTTATATTTAGGAACGGAG 59.081 44.000 0.00 0.00 0.00 4.63
740 2393 5.010415 ACGGACTTATATTTAGGAACGGAGG 59.990 44.000 0.00 0.00 0.00 4.30
741 2394 5.566230 CGGACTTATATTTAGGAACGGAGGG 60.566 48.000 0.00 0.00 0.00 4.30
742 2395 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
743 2396 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
744 2397 5.543020 ACTTATATTTAGGAACGGAGGGAGG 59.457 44.000 0.00 0.00 0.00 4.30
745 2398 1.508256 ATTTAGGAACGGAGGGAGGG 58.492 55.000 0.00 0.00 0.00 4.30
746 2399 0.414629 TTTAGGAACGGAGGGAGGGA 59.585 55.000 0.00 0.00 0.00 4.20
747 2400 0.032416 TTAGGAACGGAGGGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
812 2465 1.595357 GTCCGGTTCCATTCGAGGT 59.405 57.895 0.00 0.00 0.00 3.85
816 2469 0.822164 CGGTTCCATTCGAGGTAGGT 59.178 55.000 0.00 0.00 0.00 3.08
881 2538 2.506231 CCCTTTCCCCTCTTCTAGTTCC 59.494 54.545 0.00 0.00 0.00 3.62
885 2542 4.354208 TTCCCCTCTTCTAGTTCCATCT 57.646 45.455 0.00 0.00 0.00 2.90
886 2543 4.354208 TCCCCTCTTCTAGTTCCATCTT 57.646 45.455 0.00 0.00 0.00 2.40
964 2636 6.539826 CCTGTTGAGTTTGTGCAGATCATATA 59.460 38.462 0.00 0.00 0.00 0.86
999 2671 6.460399 GCTCAATATAGGATAGGGTTAGCGAG 60.460 46.154 0.00 0.00 0.00 5.03
1000 2672 6.728411 TCAATATAGGATAGGGTTAGCGAGA 58.272 40.000 0.00 0.00 0.00 4.04
1001 2673 7.355101 TCAATATAGGATAGGGTTAGCGAGAT 58.645 38.462 0.00 0.00 0.00 2.75
1037 2709 1.037579 GGTGCAAGCCCATACTTCCC 61.038 60.000 0.00 0.00 0.00 3.97
1043 2715 2.493278 CAAGCCCATACTTCCCACAAAG 59.507 50.000 0.00 0.00 0.00 2.77
1082 2754 3.385314 TGGAATCAATGGCATTGGAGA 57.615 42.857 33.20 19.04 40.61 3.71
1146 2821 4.927782 GACACCCACCGCAGCACA 62.928 66.667 0.00 0.00 0.00 4.57
1147 2822 4.269523 ACACCCACCGCAGCACAT 62.270 61.111 0.00 0.00 0.00 3.21
1188 2863 0.320374 CCGTGCTCAAGGACAAGGTA 59.680 55.000 2.54 0.00 36.05 3.08
1191 2866 2.612972 CGTGCTCAAGGACAAGGTACAT 60.613 50.000 2.54 0.00 36.05 2.29
1309 2984 1.153168 GCCGTGGCTACATCCATGT 60.153 57.895 2.98 0.00 40.66 3.21
1352 3027 3.342627 CCTCGGCGCGTTGACAAA 61.343 61.111 8.43 0.00 0.00 2.83
1358 3033 1.082366 GCGCGTTGACAAAATCCGT 60.082 52.632 8.43 0.00 0.00 4.69
1363 3038 4.639959 CGCGTTGACAAAATCCGTTAATA 58.360 39.130 0.00 0.00 0.00 0.98
1411 3086 2.125952 GCCATGCAAAGAACGGCC 60.126 61.111 0.00 0.00 36.73 6.13
1412 3087 2.639327 GCCATGCAAAGAACGGCCT 61.639 57.895 0.00 0.00 36.73 5.19
1470 3151 4.039357 CAGTGGCAGCAGCAGCAC 62.039 66.667 12.41 8.01 45.49 4.40
1509 3190 1.299648 CATCCCTGGAAAGTCCGCA 59.700 57.895 0.00 0.00 40.17 5.69
1738 3419 2.983592 CCACCAGGTTGTTCGGGC 60.984 66.667 0.00 0.00 0.00 6.13
1755 3436 4.647615 CCCTCCGGCTACGATGCG 62.648 72.222 0.00 0.00 44.60 4.73
1842 3529 2.594303 CACGCCAAGTTCCAGCCA 60.594 61.111 0.00 0.00 0.00 4.75
1854 3541 1.669115 CCAGCCACTCAAGTCGGTG 60.669 63.158 0.69 0.69 35.06 4.94
2019 3706 1.452145 GCACCACTTTCTCCCGCAAA 61.452 55.000 0.00 0.00 0.00 3.68
2106 3799 1.112113 GGCACGGTAAGAGATCCTCA 58.888 55.000 0.00 0.00 32.06 3.86
2243 3977 7.455953 TGAGCCCATGAAACTGTAGATAGATAT 59.544 37.037 0.00 0.00 0.00 1.63
2244 3978 8.901472 AGCCCATGAAACTGTAGATAGATATA 57.099 34.615 0.00 0.00 0.00 0.86
2264 4007 0.179468 TAGCGGGGCTTGATTACACC 59.821 55.000 0.00 0.00 40.44 4.16
2337 4080 2.190981 GTAGGGCATTTCGTACGTCTG 58.809 52.381 16.05 11.90 0.00 3.51
2359 4102 7.926018 GTCTGAAGTTTTCTCTCTCTTCTTCTT 59.074 37.037 0.00 0.00 37.67 2.52
2360 4103 8.482128 TCTGAAGTTTTCTCTCTCTTCTTCTTT 58.518 33.333 0.00 0.00 37.67 2.52
2361 4104 9.108284 CTGAAGTTTTCTCTCTCTTCTTCTTTT 57.892 33.333 0.00 0.00 37.67 2.27
2362 4105 8.887717 TGAAGTTTTCTCTCTCTTCTTCTTTTG 58.112 33.333 0.00 0.00 37.67 2.44
2363 4106 8.800370 AAGTTTTCTCTCTCTTCTTCTTTTGT 57.200 30.769 0.00 0.00 0.00 2.83
2364 4107 9.892130 AAGTTTTCTCTCTCTTCTTCTTTTGTA 57.108 29.630 0.00 0.00 0.00 2.41
2365 4108 9.320352 AGTTTTCTCTCTCTTCTTCTTTTGTAC 57.680 33.333 0.00 0.00 0.00 2.90
2366 4109 8.552865 GTTTTCTCTCTCTTCTTCTTTTGTACC 58.447 37.037 0.00 0.00 0.00 3.34
2367 4110 6.347859 TCTCTCTCTTCTTCTTTTGTACCC 57.652 41.667 0.00 0.00 0.00 3.69
2368 4111 5.246429 TCTCTCTCTTCTTCTTTTGTACCCC 59.754 44.000 0.00 0.00 0.00 4.95
2369 4112 4.286291 TCTCTCTTCTTCTTTTGTACCCCC 59.714 45.833 0.00 0.00 0.00 5.40
2370 4113 4.240323 TCTCTTCTTCTTTTGTACCCCCT 58.760 43.478 0.00 0.00 0.00 4.79
2371 4114 4.286291 TCTCTTCTTCTTTTGTACCCCCTC 59.714 45.833 0.00 0.00 0.00 4.30
2372 4115 3.329814 TCTTCTTCTTTTGTACCCCCTCC 59.670 47.826 0.00 0.00 0.00 4.30
2373 4116 1.626825 TCTTCTTTTGTACCCCCTCCG 59.373 52.381 0.00 0.00 0.00 4.63
2374 4117 1.350019 CTTCTTTTGTACCCCCTCCGT 59.650 52.381 0.00 0.00 0.00 4.69
2375 4118 1.437397 TCTTTTGTACCCCCTCCGTT 58.563 50.000 0.00 0.00 0.00 4.44
2376 4119 1.348696 TCTTTTGTACCCCCTCCGTTC 59.651 52.381 0.00 0.00 0.00 3.95
2377 4120 0.035176 TTTTGTACCCCCTCCGTTCG 59.965 55.000 0.00 0.00 0.00 3.95
2378 4121 1.829523 TTTGTACCCCCTCCGTTCGG 61.830 60.000 4.74 4.74 0.00 4.30
2379 4122 2.362889 GTACCCCCTCCGTTCGGA 60.363 66.667 13.34 13.34 0.00 4.55
2380 4123 1.984026 GTACCCCCTCCGTTCGGAA 60.984 63.158 14.79 0.00 33.41 4.30
2381 4124 1.002017 TACCCCCTCCGTTCGGAAT 59.998 57.895 14.79 2.09 33.41 3.01
2382 4125 0.618393 TACCCCCTCCGTTCGGAATT 60.618 55.000 14.79 1.26 33.41 2.17
2383 4126 0.618393 ACCCCCTCCGTTCGGAATTA 60.618 55.000 14.79 0.00 33.41 1.40
2384 4127 0.179065 CCCCCTCCGTTCGGAATTAC 60.179 60.000 14.79 0.00 33.41 1.89
2385 4128 0.828677 CCCCTCCGTTCGGAATTACT 59.171 55.000 14.79 0.00 33.41 2.24
2386 4129 1.208776 CCCCTCCGTTCGGAATTACTT 59.791 52.381 14.79 0.00 33.41 2.24
2387 4130 2.431782 CCCCTCCGTTCGGAATTACTTA 59.568 50.000 14.79 0.00 33.41 2.24
2388 4131 3.070590 CCCCTCCGTTCGGAATTACTTAT 59.929 47.826 14.79 0.00 33.41 1.73
2389 4132 4.304939 CCCTCCGTTCGGAATTACTTATC 58.695 47.826 14.79 0.00 33.41 1.75
2390 4133 3.979495 CCTCCGTTCGGAATTACTTATCG 59.021 47.826 14.79 0.00 33.41 2.92
2391 4134 4.498682 CCTCCGTTCGGAATTACTTATCGT 60.499 45.833 14.79 0.00 33.41 3.73
2392 4135 4.353737 TCCGTTCGGAATTACTTATCGTG 58.646 43.478 11.66 0.00 0.00 4.35
2393 4136 4.096231 TCCGTTCGGAATTACTTATCGTGA 59.904 41.667 11.66 0.00 0.00 4.35
2394 4137 4.440103 CCGTTCGGAATTACTTATCGTGAG 59.560 45.833 5.19 0.00 0.00 3.51
2395 4138 9.522644 CTCCGTTCGGAATTACTTATCGTGAGA 62.523 44.444 14.79 0.00 38.07 3.27
2411 4154 6.561737 TCGTGAGAATGGATGTATCTAGAC 57.438 41.667 0.00 0.00 37.03 2.59
2412 4155 5.179555 TCGTGAGAATGGATGTATCTAGACG 59.820 44.000 0.00 0.00 37.03 4.18
2413 4156 5.049336 CGTGAGAATGGATGTATCTAGACGT 60.049 44.000 0.00 0.00 30.43 4.34
2414 4157 6.147328 CGTGAGAATGGATGTATCTAGACGTA 59.853 42.308 0.00 0.00 30.43 3.57
2415 4158 7.148390 CGTGAGAATGGATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 30.43 3.06
2416 4159 8.516234 GTGAGAATGGATGTATCTAGACGTATT 58.484 37.037 0.00 0.00 0.00 1.89
2417 4160 9.078990 TGAGAATGGATGTATCTAGACGTATTT 57.921 33.333 0.00 0.00 0.00 1.40
2418 4161 9.915629 GAGAATGGATGTATCTAGACGTATTTT 57.084 33.333 0.00 0.00 0.00 1.82
2449 4192 9.653287 TTAGATACATTCATTTTCGAGACAAGT 57.347 29.630 0.00 0.00 0.00 3.16
2451 4194 9.653287 AGATACATTCATTTTCGAGACAAGTAA 57.347 29.630 0.00 0.00 0.00 2.24
2455 4198 7.957484 ACATTCATTTTCGAGACAAGTAATTCG 59.043 33.333 0.00 0.00 34.56 3.34
2456 4199 6.403333 TCATTTTCGAGACAAGTAATTCGG 57.597 37.500 0.00 0.00 34.08 4.30
2457 4200 6.160684 TCATTTTCGAGACAAGTAATTCGGA 58.839 36.000 0.00 0.00 34.08 4.55
2458 4201 6.647481 TCATTTTCGAGACAAGTAATTCGGAA 59.353 34.615 0.00 0.00 34.08 4.30
2459 4202 5.834239 TTTCGAGACAAGTAATTCGGAAC 57.166 39.130 0.00 0.00 34.08 3.62
2506 4253 2.361483 TCATGCGTTGCCTGCCAT 60.361 55.556 0.00 0.00 0.00 4.40
2540 4287 4.777140 TGATTTCTCATTGTCGTATGCG 57.223 40.909 0.00 0.00 39.92 4.73
2541 4288 3.555547 TGATTTCTCATTGTCGTATGCGG 59.444 43.478 2.62 0.00 38.89 5.69
2542 4289 1.286501 TTCTCATTGTCGTATGCGGC 58.713 50.000 0.00 0.00 43.99 6.53
2543 4290 0.459899 TCTCATTGTCGTATGCGGCT 59.540 50.000 9.69 0.00 44.07 5.52
2544 4291 0.578683 CTCATTGTCGTATGCGGCTG 59.421 55.000 9.69 0.00 44.07 4.85
2545 4292 1.010797 CATTGTCGTATGCGGCTGC 60.011 57.895 11.65 11.65 44.07 5.25
2559 4306 4.954238 GCGGCTGCATAAATTTTGTATC 57.046 40.909 14.08 0.00 42.15 2.24
2560 4307 4.610945 GCGGCTGCATAAATTTTGTATCT 58.389 39.130 14.08 0.00 42.15 1.98
2561 4308 5.043248 GCGGCTGCATAAATTTTGTATCTT 58.957 37.500 14.08 0.00 42.15 2.40
2562 4309 6.205784 GCGGCTGCATAAATTTTGTATCTTA 58.794 36.000 14.08 0.00 42.15 2.10
2563 4310 6.695278 GCGGCTGCATAAATTTTGTATCTTAA 59.305 34.615 14.08 0.00 42.15 1.85
2564 4311 7.096477 GCGGCTGCATAAATTTTGTATCTTAAG 60.096 37.037 14.08 0.00 42.15 1.85
2565 4312 8.128582 CGGCTGCATAAATTTTGTATCTTAAGA 58.871 33.333 7.82 7.82 0.00 2.10
2566 4313 9.971922 GGCTGCATAAATTTTGTATCTTAAGAT 57.028 29.630 21.28 21.28 38.51 2.40
2576 4323 8.981724 TTTTGTATCTTAAGATATCGGATCGG 57.018 34.615 24.42 0.00 39.03 4.18
2577 4324 7.933215 TTGTATCTTAAGATATCGGATCGGA 57.067 36.000 24.42 5.34 39.03 4.55
2578 4325 8.521170 TTGTATCTTAAGATATCGGATCGGAT 57.479 34.615 24.42 18.52 39.03 4.18
2579 4326 7.931275 TGTATCTTAAGATATCGGATCGGATG 58.069 38.462 24.42 7.00 39.03 3.51
2580 4327 7.556635 TGTATCTTAAGATATCGGATCGGATGT 59.443 37.037 24.42 17.12 39.03 3.06
2581 4328 6.438259 TCTTAAGATATCGGATCGGATGTC 57.562 41.667 23.86 23.86 35.49 3.06
2582 4329 5.357314 TCTTAAGATATCGGATCGGATGTCC 59.643 44.000 26.09 15.31 35.77 4.02
2583 4330 2.379972 AGATATCGGATCGGATGTCCC 58.620 52.381 26.09 11.48 35.77 4.46
2584 4331 1.409427 GATATCGGATCGGATGTCCCC 59.591 57.143 22.28 4.27 30.81 4.81
2585 4332 0.613853 TATCGGATCGGATGTCCCCC 60.614 60.000 22.28 0.00 31.87 5.40
2586 4333 2.673027 ATCGGATCGGATGTCCCCCA 62.673 60.000 14.43 0.00 31.87 4.96
2587 4334 2.439960 CGGATCGGATGTCCCCCAA 61.440 63.158 0.00 0.00 31.87 4.12
2588 4335 1.451936 GGATCGGATGTCCCCCAAG 59.548 63.158 0.00 0.00 0.00 3.61
2589 4336 1.451936 GATCGGATGTCCCCCAAGG 59.548 63.158 0.00 0.00 0.00 3.61
2590 4337 1.004230 ATCGGATGTCCCCCAAGGA 59.996 57.895 0.00 0.00 44.91 3.36
2599 4346 2.785357 TCCCCCAAGGAACATTTTGT 57.215 45.000 0.00 0.00 43.78 2.83
2600 4347 3.905493 TCCCCCAAGGAACATTTTGTA 57.095 42.857 0.00 0.00 43.78 2.41
2601 4348 4.412060 TCCCCCAAGGAACATTTTGTAT 57.588 40.909 0.00 0.00 43.78 2.29
2602 4349 4.349365 TCCCCCAAGGAACATTTTGTATC 58.651 43.478 0.00 0.00 43.78 2.24
2603 4350 4.045334 TCCCCCAAGGAACATTTTGTATCT 59.955 41.667 0.00 0.00 43.78 1.98
2604 4351 4.777366 CCCCCAAGGAACATTTTGTATCTT 59.223 41.667 0.00 0.00 38.24 2.40
2605 4352 5.955355 CCCCCAAGGAACATTTTGTATCTTA 59.045 40.000 0.00 0.00 38.24 2.10
2606 4353 6.439058 CCCCCAAGGAACATTTTGTATCTTAA 59.561 38.462 0.00 0.00 38.24 1.85
2607 4354 7.363793 CCCCCAAGGAACATTTTGTATCTTAAG 60.364 40.741 0.00 0.00 38.24 1.85
2608 4355 7.396055 CCCCAAGGAACATTTTGTATCTTAAGA 59.604 37.037 7.82 7.82 33.47 2.10
2609 4356 8.971073 CCCAAGGAACATTTTGTATCTTAAGAT 58.029 33.333 21.28 21.28 38.51 2.40
2627 4374 9.373603 TCTTAAGATACGAAATTTGATTTCCGA 57.626 29.630 0.00 0.00 44.40 4.55
2628 4375 9.422196 CTTAAGATACGAAATTTGATTTCCGAC 57.578 33.333 0.00 0.00 44.40 4.79
2629 4376 6.978343 AGATACGAAATTTGATTTCCGACA 57.022 33.333 0.00 0.00 44.40 4.35
2630 4377 6.772078 AGATACGAAATTTGATTTCCGACAC 58.228 36.000 0.00 0.00 44.40 3.67
2631 4378 4.822036 ACGAAATTTGATTTCCGACACA 57.178 36.364 0.00 0.00 44.40 3.72
2632 4379 5.371115 ACGAAATTTGATTTCCGACACAT 57.629 34.783 0.00 0.00 44.40 3.21
2633 4380 5.768317 ACGAAATTTGATTTCCGACACATT 58.232 33.333 0.00 0.00 44.40 2.71
2634 4381 6.212955 ACGAAATTTGATTTCCGACACATTT 58.787 32.000 0.00 0.00 44.40 2.32
2635 4382 6.362283 ACGAAATTTGATTTCCGACACATTTC 59.638 34.615 0.00 0.00 44.40 2.17
2636 4383 6.689178 AAATTTGATTTCCGACACATTTCG 57.311 33.333 0.00 0.00 38.80 3.46
2637 4384 4.822036 TTTGATTTCCGACACATTTCGT 57.178 36.364 0.00 0.00 37.29 3.85
2638 4385 5.926214 TTTGATTTCCGACACATTTCGTA 57.074 34.783 0.00 0.00 37.29 3.43
2639 4386 4.914312 TGATTTCCGACACATTTCGTAC 57.086 40.909 0.00 0.00 37.29 3.67
2640 4387 3.680937 TGATTTCCGACACATTTCGTACC 59.319 43.478 0.00 0.00 37.29 3.34
2641 4388 1.700523 TTCCGACACATTTCGTACCG 58.299 50.000 0.00 0.00 37.29 4.02
2642 4389 0.733566 TCCGACACATTTCGTACCGC 60.734 55.000 0.00 0.00 37.29 5.68
2643 4390 0.734942 CCGACACATTTCGTACCGCT 60.735 55.000 0.00 0.00 37.29 5.52
2644 4391 0.365523 CGACACATTTCGTACCGCTG 59.634 55.000 0.00 0.00 34.16 5.18
2645 4392 0.094730 GACACATTTCGTACCGCTGC 59.905 55.000 0.00 0.00 0.00 5.25
2646 4393 1.296056 ACACATTTCGTACCGCTGCC 61.296 55.000 0.00 0.00 0.00 4.85
2649 4396 0.027979 CATTTCGTACCGCTGCCATG 59.972 55.000 0.00 0.00 0.00 3.66
2682 4429 7.972832 ACTTAAGATACGAAATGTGTTGGAA 57.027 32.000 10.09 0.00 0.00 3.53
2687 4434 8.742554 AAGATACGAAATGTGTTGGAAATTTC 57.257 30.769 9.83 9.83 37.09 2.17
2691 4438 7.272037 ACGAAATGTGTTGGAAATTTCTACT 57.728 32.000 17.42 1.41 37.89 2.57
2864 4705 0.462581 CTAGCAAATCCAGCGGCTGA 60.463 55.000 30.52 16.77 37.17 4.26
2881 4722 5.639757 CGGCTGAACAATTTTGATGATGTA 58.360 37.500 0.00 0.00 0.00 2.29
2883 4724 6.197655 CGGCTGAACAATTTTGATGATGTATG 59.802 38.462 0.00 0.00 0.00 2.39
2886 4727 7.546667 GCTGAACAATTTTGATGATGTATGGTT 59.453 33.333 0.00 0.00 0.00 3.67
2899 4740 5.368230 TGATGTATGGTTGGGCTTGTCTATA 59.632 40.000 0.00 0.00 0.00 1.31
2909 4750 7.885399 GGTTGGGCTTGTCTATAGATGATAAAT 59.115 37.037 5.57 0.00 0.00 1.40
2934 4775 2.653890 CTTGTCATCAAACTGTTGCCG 58.346 47.619 0.00 0.00 34.50 5.69
2936 4777 0.593128 GTCATCAAACTGTTGCCGCT 59.407 50.000 0.00 0.00 34.50 5.52
2950 4791 2.031012 CGCTCTGCCTTGGTGACA 59.969 61.111 0.00 0.00 39.83 3.58
2972 4814 0.612732 TGCTGAAATGCAAGGGAGGG 60.613 55.000 0.00 0.00 40.29 4.30
2974 4816 1.340991 GCTGAAATGCAAGGGAGGGTA 60.341 52.381 0.00 0.00 0.00 3.69
2993 4835 9.419297 GGAGGGTAAAATTAAAATCAACAGAAC 57.581 33.333 0.00 0.00 0.00 3.01
3011 4853 3.545481 CGATGTGCGTGACGGCTC 61.545 66.667 7.25 0.90 34.64 4.70
3012 4854 2.432456 GATGTGCGTGACGGCTCA 60.432 61.111 7.25 6.86 40.26 4.26
3013 4855 2.027073 GATGTGCGTGACGGCTCAA 61.027 57.895 7.25 0.00 39.52 3.02
3014 4856 1.565156 GATGTGCGTGACGGCTCAAA 61.565 55.000 7.25 0.00 39.52 2.69
3015 4857 1.163420 ATGTGCGTGACGGCTCAAAA 61.163 50.000 7.25 0.00 39.52 2.44
3016 4858 1.163420 TGTGCGTGACGGCTCAAAAT 61.163 50.000 7.25 0.00 33.90 1.82
3017 4859 0.452784 GTGCGTGACGGCTCAAAATC 60.453 55.000 7.25 0.00 0.00 2.17
3018 4860 0.882484 TGCGTGACGGCTCAAAATCA 60.882 50.000 7.25 0.00 0.00 2.57
3019 4861 0.447801 GCGTGACGGCTCAAAATCAT 59.552 50.000 7.25 0.00 0.00 2.45
3020 4862 1.663643 GCGTGACGGCTCAAAATCATA 59.336 47.619 7.25 0.00 0.00 2.15
3021 4863 2.536928 GCGTGACGGCTCAAAATCATAC 60.537 50.000 7.25 0.00 0.00 2.39
3022 4864 2.930040 CGTGACGGCTCAAAATCATACT 59.070 45.455 0.00 0.00 0.00 2.12
3023 4865 3.000322 CGTGACGGCTCAAAATCATACTC 60.000 47.826 0.00 0.00 0.00 2.59
3024 4866 3.309954 GTGACGGCTCAAAATCATACTCC 59.690 47.826 0.00 0.00 0.00 3.85
3025 4867 2.872858 GACGGCTCAAAATCATACTCCC 59.127 50.000 0.00 0.00 0.00 4.30
3026 4868 2.505819 ACGGCTCAAAATCATACTCCCT 59.494 45.455 0.00 0.00 0.00 4.20
3027 4869 3.134458 CGGCTCAAAATCATACTCCCTC 58.866 50.000 0.00 0.00 0.00 4.30
3028 4870 3.481453 GGCTCAAAATCATACTCCCTCC 58.519 50.000 0.00 0.00 0.00 4.30
3029 4871 3.134458 GCTCAAAATCATACTCCCTCCG 58.866 50.000 0.00 0.00 0.00 4.63
3030 4872 3.432326 GCTCAAAATCATACTCCCTCCGT 60.432 47.826 0.00 0.00 0.00 4.69
3031 4873 4.770795 CTCAAAATCATACTCCCTCCGTT 58.229 43.478 0.00 0.00 0.00 4.44
3032 4874 4.766375 TCAAAATCATACTCCCTCCGTTC 58.234 43.478 0.00 0.00 0.00 3.95
3033 4875 3.454371 AAATCATACTCCCTCCGTTCG 57.546 47.619 0.00 0.00 0.00 3.95
3034 4876 2.359981 ATCATACTCCCTCCGTTCGA 57.640 50.000 0.00 0.00 0.00 3.71
3035 4877 2.133281 TCATACTCCCTCCGTTCGAA 57.867 50.000 0.00 0.00 0.00 3.71
3036 4878 2.449464 TCATACTCCCTCCGTTCGAAA 58.551 47.619 0.00 0.00 0.00 3.46
3037 4879 2.827322 TCATACTCCCTCCGTTCGAAAA 59.173 45.455 0.00 0.00 0.00 2.29
3038 4880 3.449737 TCATACTCCCTCCGTTCGAAAAT 59.550 43.478 0.00 0.00 0.00 1.82
3039 4881 4.646040 TCATACTCCCTCCGTTCGAAAATA 59.354 41.667 0.00 0.00 0.00 1.40
3040 4882 5.303589 TCATACTCCCTCCGTTCGAAAATAT 59.696 40.000 0.00 0.00 0.00 1.28
3041 4883 4.482952 ACTCCCTCCGTTCGAAAATATT 57.517 40.909 0.00 0.00 0.00 1.28
3042 4884 4.840271 ACTCCCTCCGTTCGAAAATATTT 58.160 39.130 0.00 0.00 0.00 1.40
3043 4885 4.634443 ACTCCCTCCGTTCGAAAATATTTG 59.366 41.667 0.00 0.00 0.00 2.32
3044 4886 4.581868 TCCCTCCGTTCGAAAATATTTGT 58.418 39.130 0.00 0.00 0.00 2.83
3045 4887 4.632688 TCCCTCCGTTCGAAAATATTTGTC 59.367 41.667 0.00 1.54 0.00 3.18
3046 4888 4.201881 CCCTCCGTTCGAAAATATTTGTCC 60.202 45.833 0.00 0.00 0.00 4.02
3047 4889 4.201881 CCTCCGTTCGAAAATATTTGTCCC 60.202 45.833 0.00 0.00 0.00 4.46
3048 4890 4.325119 TCCGTTCGAAAATATTTGTCCCA 58.675 39.130 0.00 0.00 0.00 4.37
3049 4891 4.760715 TCCGTTCGAAAATATTTGTCCCAA 59.239 37.500 0.00 0.00 0.00 4.12
3050 4892 5.241064 TCCGTTCGAAAATATTTGTCCCAAA 59.759 36.000 0.00 0.00 0.00 3.28
3051 4893 5.921408 CCGTTCGAAAATATTTGTCCCAAAA 59.079 36.000 0.00 0.00 0.00 2.44
3052 4894 6.588373 CCGTTCGAAAATATTTGTCCCAAAAT 59.412 34.615 0.00 0.00 34.24 1.82
3053 4895 7.117092 CCGTTCGAAAATATTTGTCCCAAAATT 59.883 33.333 0.00 0.00 32.16 1.82
3054 4896 7.949428 CGTTCGAAAATATTTGTCCCAAAATTG 59.051 33.333 0.00 0.00 32.16 2.32
3055 4897 8.983724 GTTCGAAAATATTTGTCCCAAAATTGA 58.016 29.630 0.00 0.00 32.16 2.57
3056 4898 9.547753 TTCGAAAATATTTGTCCCAAAATTGAA 57.452 25.926 0.39 0.00 32.16 2.69
3057 4899 9.717942 TCGAAAATATTTGTCCCAAAATTGAAT 57.282 25.926 0.39 0.00 32.16 2.57
3058 4900 9.757859 CGAAAATATTTGTCCCAAAATTGAATG 57.242 29.630 0.39 0.00 32.16 2.67
3126 4968 8.263940 TCTATTTCTTTGACAAGTATTTCGGG 57.736 34.615 0.00 0.00 0.00 5.14
3127 4969 8.098286 TCTATTTCTTTGACAAGTATTTCGGGA 58.902 33.333 0.00 0.00 0.00 5.14
3128 4970 5.934935 TTCTTTGACAAGTATTTCGGGAC 57.065 39.130 0.00 0.00 0.00 4.46
3129 4971 4.963373 TCTTTGACAAGTATTTCGGGACA 58.037 39.130 0.00 0.00 0.00 4.02
3130 4972 4.994852 TCTTTGACAAGTATTTCGGGACAG 59.005 41.667 0.00 0.00 0.00 3.51
3131 4973 4.610605 TTGACAAGTATTTCGGGACAGA 57.389 40.909 0.00 0.00 0.00 3.41
3132 4974 4.188247 TGACAAGTATTTCGGGACAGAG 57.812 45.455 0.00 0.00 0.00 3.35
3133 4975 3.056107 TGACAAGTATTTCGGGACAGAGG 60.056 47.826 0.00 0.00 0.00 3.69
3134 4976 2.236395 ACAAGTATTTCGGGACAGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3135 4977 2.500098 CAAGTATTTCGGGACAGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3136 4978 2.389715 AGTATTTCGGGACAGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
3137 4979 2.108970 GTATTTCGGGACAGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
3138 4980 2.544844 ATTTCGGGACAGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
3139 4981 1.553706 TTTCGGGACAGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
3140 4982 0.406750 TTCGGGACAGAGGGAGTACA 59.593 55.000 0.00 0.00 0.00 2.90
3141 4983 0.629596 TCGGGACAGAGGGAGTACAT 59.370 55.000 0.00 0.00 0.00 2.29
3142 4984 0.747255 CGGGACAGAGGGAGTACATG 59.253 60.000 0.00 0.00 0.00 3.21
3143 4985 1.685180 CGGGACAGAGGGAGTACATGA 60.685 57.143 0.00 0.00 0.00 3.07
3144 4986 2.467880 GGGACAGAGGGAGTACATGAA 58.532 52.381 0.00 0.00 0.00 2.57
3145 4987 2.432510 GGGACAGAGGGAGTACATGAAG 59.567 54.545 0.00 0.00 0.00 3.02
3146 4988 3.366396 GGACAGAGGGAGTACATGAAGA 58.634 50.000 0.00 0.00 0.00 2.87
3147 4989 3.964031 GGACAGAGGGAGTACATGAAGAT 59.036 47.826 0.00 0.00 0.00 2.40
3148 4990 5.141182 GGACAGAGGGAGTACATGAAGATA 58.859 45.833 0.00 0.00 0.00 1.98
3149 4991 5.598830 GGACAGAGGGAGTACATGAAGATAA 59.401 44.000 0.00 0.00 0.00 1.75
3150 4992 6.268847 GGACAGAGGGAGTACATGAAGATAAT 59.731 42.308 0.00 0.00 0.00 1.28
3151 4993 7.451877 GGACAGAGGGAGTACATGAAGATAATA 59.548 40.741 0.00 0.00 0.00 0.98
3152 4994 8.964533 ACAGAGGGAGTACATGAAGATAATAT 57.035 34.615 0.00 0.00 0.00 1.28
3153 4995 9.386122 ACAGAGGGAGTACATGAAGATAATATT 57.614 33.333 0.00 0.00 0.00 1.28
3169 5011 8.885693 AGATAATATTTTCTTGGGATAAGGCC 57.114 34.615 0.00 0.00 0.00 5.19
3170 5012 8.682514 AGATAATATTTTCTTGGGATAAGGCCT 58.317 33.333 0.00 0.00 0.00 5.19
3171 5013 9.975218 GATAATATTTTCTTGGGATAAGGCCTA 57.025 33.333 5.16 0.00 0.00 3.93
3172 5014 9.981460 ATAATATTTTCTTGGGATAAGGCCTAG 57.019 33.333 5.16 0.00 0.00 3.02
3173 5015 5.734031 ATTTTCTTGGGATAAGGCCTAGT 57.266 39.130 5.16 0.00 0.00 2.57
3174 5016 6.841781 ATTTTCTTGGGATAAGGCCTAGTA 57.158 37.500 5.16 0.00 0.00 1.82
3175 5017 5.888982 TTTCTTGGGATAAGGCCTAGTAG 57.111 43.478 5.16 0.00 0.00 2.57
3176 5018 3.240302 TCTTGGGATAAGGCCTAGTAGC 58.760 50.000 5.16 0.00 0.00 3.58
3177 5019 1.629043 TGGGATAAGGCCTAGTAGCG 58.371 55.000 5.16 0.00 0.00 4.26
3178 5020 0.246910 GGGATAAGGCCTAGTAGCGC 59.753 60.000 5.16 2.86 0.00 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 108 4.635324 CAGGCTTTGGCTTCAAAAGAAAAA 59.365 37.500 0.25 0.00 39.56 1.94
102 109 4.190772 CAGGCTTTGGCTTCAAAAGAAAA 58.809 39.130 0.25 0.00 39.56 2.29
103 110 3.197549 ACAGGCTTTGGCTTCAAAAGAAA 59.802 39.130 0.25 0.00 39.56 2.52
104 111 2.765699 ACAGGCTTTGGCTTCAAAAGAA 59.234 40.909 0.25 0.00 39.56 2.52
105 112 2.101249 CACAGGCTTTGGCTTCAAAAGA 59.899 45.455 0.25 0.00 39.56 2.52
106 113 2.476821 CACAGGCTTTGGCTTCAAAAG 58.523 47.619 0.00 0.00 39.56 2.27
107 114 1.138661 CCACAGGCTTTGGCTTCAAAA 59.861 47.619 6.78 0.00 39.56 2.44
108 115 0.752054 CCACAGGCTTTGGCTTCAAA 59.248 50.000 6.78 0.00 35.88 2.69
109 116 1.114722 CCCACAGGCTTTGGCTTCAA 61.115 55.000 14.36 0.00 35.88 2.69
110 117 1.531365 CCCACAGGCTTTGGCTTCA 60.531 57.895 14.36 0.00 35.88 3.02
111 118 1.527433 GACCCACAGGCTTTGGCTTC 61.527 60.000 14.36 8.72 35.88 3.86
112 119 1.531602 GACCCACAGGCTTTGGCTT 60.532 57.895 14.36 2.96 35.88 4.35
113 120 2.011617 AAGACCCACAGGCTTTGGCT 62.012 55.000 14.36 0.00 39.66 4.75
114 121 0.251165 TAAGACCCACAGGCTTTGGC 60.251 55.000 14.36 1.72 36.11 4.52
115 122 1.534729 GTAAGACCCACAGGCTTTGG 58.465 55.000 12.87 12.87 36.11 3.28
116 123 1.156736 CGTAAGACCCACAGGCTTTG 58.843 55.000 0.00 0.00 43.02 2.77
117 124 0.036306 CCGTAAGACCCACAGGCTTT 59.964 55.000 0.00 0.00 43.02 3.51
118 125 0.834687 TCCGTAAGACCCACAGGCTT 60.835 55.000 0.00 0.00 43.02 4.35
246 287 9.807921 TTTCTAGGGTTGATCTTATTTTCTTGT 57.192 29.630 0.00 0.00 0.00 3.16
343 384 3.932710 CCGAAGTACTGCAGCTTCAATAA 59.067 43.478 24.72 0.00 40.63 1.40
471 2118 6.849588 ACGGACTAAAACGAGTAAACAAAT 57.150 33.333 0.00 0.00 0.00 2.32
478 2125 6.072112 AGTACAAACGGACTAAAACGAGTA 57.928 37.500 0.00 0.00 0.00 2.59
518 2165 9.533253 CTCTGTTCCAAATTACAAGATGTTTTT 57.467 29.630 0.00 0.00 0.00 1.94
618 2271 8.656849 GCTCCGTATGTAGTCCATAATAAAATG 58.343 37.037 0.00 0.00 37.77 2.32
619 2272 8.372459 TGCTCCGTATGTAGTCCATAATAAAAT 58.628 33.333 0.00 0.00 37.77 1.82
620 2273 7.728148 TGCTCCGTATGTAGTCCATAATAAAA 58.272 34.615 0.00 0.00 37.77 1.52
621 2274 7.292713 TGCTCCGTATGTAGTCCATAATAAA 57.707 36.000 0.00 0.00 37.77 1.40
623 2276 6.904463 TTGCTCCGTATGTAGTCCATAATA 57.096 37.500 0.00 0.00 37.77 0.98
625 2278 5.128171 ACTTTGCTCCGTATGTAGTCCATAA 59.872 40.000 0.00 0.00 37.77 1.90
626 2279 4.647853 ACTTTGCTCCGTATGTAGTCCATA 59.352 41.667 0.00 0.00 34.86 2.74
627 2280 3.451178 ACTTTGCTCCGTATGTAGTCCAT 59.549 43.478 0.00 0.00 37.58 3.41
628 2281 2.829720 ACTTTGCTCCGTATGTAGTCCA 59.170 45.455 0.00 0.00 0.00 4.02
630 2283 4.106029 TCACTTTGCTCCGTATGTAGTC 57.894 45.455 0.00 0.00 0.00 2.59
632 2285 3.859961 CACTCACTTTGCTCCGTATGTAG 59.140 47.826 0.00 0.00 0.00 2.74
634 2287 2.299013 TCACTCACTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
635 2288 2.959516 TCACTCACTTTGCTCCGTATG 58.040 47.619 0.00 0.00 0.00 2.39
637 2290 3.258372 AGATTCACTCACTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
639 2292 2.693069 AGATTCACTCACTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
641 2294 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
642 2295 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
662 2315 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
663 2316 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
683 2336 4.094294 CCACTACAAACCACATAACGGATG 59.906 45.833 0.00 0.00 41.79 3.51
684 2337 4.020039 TCCACTACAAACCACATAACGGAT 60.020 41.667 0.00 0.00 0.00 4.18
685 2338 3.324268 TCCACTACAAACCACATAACGGA 59.676 43.478 0.00 0.00 0.00 4.69
686 2339 3.666274 TCCACTACAAACCACATAACGG 58.334 45.455 0.00 0.00 0.00 4.44
687 2340 5.642063 AGATTCCACTACAAACCACATAACG 59.358 40.000 0.00 0.00 0.00 3.18
688 2341 7.448748 AAGATTCCACTACAAACCACATAAC 57.551 36.000 0.00 0.00 0.00 1.89
689 2342 9.005777 GTAAAGATTCCACTACAAACCACATAA 57.994 33.333 0.00 0.00 0.00 1.90
690 2343 8.158132 TGTAAAGATTCCACTACAAACCACATA 58.842 33.333 0.00 0.00 0.00 2.29
691 2344 7.001674 TGTAAAGATTCCACTACAAACCACAT 58.998 34.615 0.00 0.00 0.00 3.21
692 2345 6.261381 GTGTAAAGATTCCACTACAAACCACA 59.739 38.462 0.00 0.00 0.00 4.17
693 2346 6.565247 CGTGTAAAGATTCCACTACAAACCAC 60.565 42.308 0.00 0.00 0.00 4.16
694 2347 5.467399 CGTGTAAAGATTCCACTACAAACCA 59.533 40.000 0.00 0.00 0.00 3.67
695 2348 5.106830 CCGTGTAAAGATTCCACTACAAACC 60.107 44.000 0.00 0.00 0.00 3.27
696 2349 5.697633 TCCGTGTAAAGATTCCACTACAAAC 59.302 40.000 0.00 0.00 0.00 2.93
697 2350 5.697633 GTCCGTGTAAAGATTCCACTACAAA 59.302 40.000 0.00 0.00 0.00 2.83
698 2351 5.011329 AGTCCGTGTAAAGATTCCACTACAA 59.989 40.000 0.00 0.00 0.00 2.41
699 2352 4.525487 AGTCCGTGTAAAGATTCCACTACA 59.475 41.667 0.00 0.00 0.00 2.74
700 2353 5.069501 AGTCCGTGTAAAGATTCCACTAC 57.930 43.478 0.00 0.00 0.00 2.73
701 2354 5.733620 AAGTCCGTGTAAAGATTCCACTA 57.266 39.130 0.00 0.00 0.00 2.74
702 2355 4.618920 AAGTCCGTGTAAAGATTCCACT 57.381 40.909 0.00 0.00 0.00 4.00
703 2356 8.658499 AATATAAGTCCGTGTAAAGATTCCAC 57.342 34.615 0.00 0.00 0.00 4.02
709 2362 9.807649 GTTCCTAAATATAAGTCCGTGTAAAGA 57.192 33.333 0.00 0.00 0.00 2.52
710 2363 8.749499 CGTTCCTAAATATAAGTCCGTGTAAAG 58.251 37.037 0.00 0.00 0.00 1.85
711 2364 7.706179 CCGTTCCTAAATATAAGTCCGTGTAAA 59.294 37.037 0.00 0.00 0.00 2.01
712 2365 7.068103 TCCGTTCCTAAATATAAGTCCGTGTAA 59.932 37.037 0.00 0.00 0.00 2.41
713 2366 6.545666 TCCGTTCCTAAATATAAGTCCGTGTA 59.454 38.462 0.00 0.00 0.00 2.90
714 2367 5.360714 TCCGTTCCTAAATATAAGTCCGTGT 59.639 40.000 0.00 0.00 0.00 4.49
715 2368 5.835257 TCCGTTCCTAAATATAAGTCCGTG 58.165 41.667 0.00 0.00 0.00 4.94
716 2369 5.010415 CCTCCGTTCCTAAATATAAGTCCGT 59.990 44.000 0.00 0.00 0.00 4.69
717 2370 5.467705 CCTCCGTTCCTAAATATAAGTCCG 58.532 45.833 0.00 0.00 0.00 4.79
718 2371 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
719 2372 6.295180 CCTCCCTCCGTTCCTAAATATAAGTC 60.295 46.154 0.00 0.00 0.00 3.01
720 2373 5.543020 CCTCCCTCCGTTCCTAAATATAAGT 59.457 44.000 0.00 0.00 0.00 2.24
721 2374 5.046520 CCCTCCCTCCGTTCCTAAATATAAG 60.047 48.000 0.00 0.00 0.00 1.73
722 2375 4.842380 CCCTCCCTCCGTTCCTAAATATAA 59.158 45.833 0.00 0.00 0.00 0.98
723 2376 4.108451 TCCCTCCCTCCGTTCCTAAATATA 59.892 45.833 0.00 0.00 0.00 0.86
724 2377 3.116473 TCCCTCCCTCCGTTCCTAAATAT 60.116 47.826 0.00 0.00 0.00 1.28
725 2378 2.248160 TCCCTCCCTCCGTTCCTAAATA 59.752 50.000 0.00 0.00 0.00 1.40
726 2379 1.009183 TCCCTCCCTCCGTTCCTAAAT 59.991 52.381 0.00 0.00 0.00 1.40
727 2380 0.414629 TCCCTCCCTCCGTTCCTAAA 59.585 55.000 0.00 0.00 0.00 1.85
728 2381 0.032416 CTCCCTCCCTCCGTTCCTAA 60.032 60.000 0.00 0.00 0.00 2.69
729 2382 1.219824 ACTCCCTCCCTCCGTTCCTA 61.220 60.000 0.00 0.00 0.00 2.94
730 2383 1.219824 TACTCCCTCCCTCCGTTCCT 61.220 60.000 0.00 0.00 0.00 3.36
731 2384 0.756070 CTACTCCCTCCCTCCGTTCC 60.756 65.000 0.00 0.00 0.00 3.62
732 2385 0.033306 ACTACTCCCTCCCTCCGTTC 60.033 60.000 0.00 0.00 0.00 3.95
733 2386 1.302907 TACTACTCCCTCCCTCCGTT 58.697 55.000 0.00 0.00 0.00 4.44
734 2387 1.532038 ATACTACTCCCTCCCTCCGT 58.468 55.000 0.00 0.00 0.00 4.69
735 2388 5.649970 ATATATACTACTCCCTCCCTCCG 57.350 47.826 0.00 0.00 0.00 4.63
738 2391 9.776709 AGGTATAATATATACTACTCCCTCCCT 57.223 37.037 7.30 0.00 0.00 4.20
812 2465 3.054655 GCAACATCCCTACTTGGAACCTA 60.055 47.826 0.00 0.00 38.10 3.08
816 2469 1.707989 TGGCAACATCCCTACTTGGAA 59.292 47.619 0.00 0.00 46.17 3.53
881 2538 1.356124 AGGGATCGATGGGGAAGATG 58.644 55.000 0.54 0.00 0.00 2.90
885 2542 2.984672 TGAATAGGGATCGATGGGGAA 58.015 47.619 0.54 0.00 0.00 3.97
886 2543 2.713828 TGAATAGGGATCGATGGGGA 57.286 50.000 0.54 0.00 0.00 4.81
999 2671 1.233019 CGGCATCTGGGAACATCATC 58.767 55.000 0.00 0.00 41.51 2.92
1000 2672 0.179009 CCGGCATCTGGGAACATCAT 60.179 55.000 0.00 0.00 41.51 2.45
1001 2673 1.224315 CCGGCATCTGGGAACATCA 59.776 57.895 0.00 0.00 41.51 3.07
1037 2709 1.082300 CGCTGCTGCTGACTTTGTG 60.082 57.895 14.03 0.00 36.97 3.33
1043 2715 3.426568 GGAACCGCTGCTGCTGAC 61.427 66.667 13.70 7.09 36.97 3.51
1055 2727 2.109774 TGCCATTGATTCCATGGAACC 58.890 47.619 29.32 21.31 37.66 3.62
1309 2984 2.668212 GTGCTGCAGGGCGTACAA 60.668 61.111 17.12 0.00 34.52 2.41
1382 3057 2.125147 CATGGCCGTCGACCACAT 60.125 61.111 10.58 9.08 40.82 3.21
1411 3086 1.271934 CTCCTGGTCATCATCCGCTAG 59.728 57.143 0.00 0.00 0.00 3.42
1412 3087 1.332195 CTCCTGGTCATCATCCGCTA 58.668 55.000 0.00 0.00 0.00 4.26
1497 3178 2.347490 GCCTCTGCGGACTTTCCA 59.653 61.111 0.00 0.00 35.91 3.53
1747 3428 4.501714 GTCCACCGCCGCATCGTA 62.502 66.667 0.00 0.00 0.00 3.43
1777 3458 0.320697 GGGCACGAGTACTTGTTCCT 59.679 55.000 25.45 0.00 31.92 3.36
1778 3459 1.012486 CGGGCACGAGTACTTGTTCC 61.012 60.000 20.42 20.42 44.60 3.62
1779 3460 1.623973 GCGGGCACGAGTACTTGTTC 61.624 60.000 15.48 8.70 44.60 3.18
1781 3462 2.048503 GCGGGCACGAGTACTTGT 60.049 61.111 15.48 10.17 44.60 3.16
1842 3529 0.109086 CGCAGATCACCGACTTGAGT 60.109 55.000 0.00 0.00 0.00 3.41
1854 3541 2.086054 AGTGGTTCTTGACGCAGATC 57.914 50.000 0.00 0.00 0.00 2.75
1921 3608 2.035442 GGACGGAGAAGTGCTTGCC 61.035 63.158 0.00 0.00 0.00 4.52
2007 3694 0.951558 GCTTGTCTTTGCGGGAGAAA 59.048 50.000 0.00 0.00 0.00 2.52
2106 3799 2.434702 GGAGGAGGACGTGGACAATAAT 59.565 50.000 0.00 0.00 0.00 1.28
2243 3977 2.038033 GGTGTAATCAAGCCCCGCTATA 59.962 50.000 0.00 0.00 38.25 1.31
2244 3978 1.202770 GGTGTAATCAAGCCCCGCTAT 60.203 52.381 0.00 0.00 38.25 2.97
2248 3982 1.024271 CATGGTGTAATCAAGCCCCG 58.976 55.000 0.00 0.00 0.00 5.73
2337 4080 8.888716 ACAAAAGAAGAAGAGAGAGAAAACTTC 58.111 33.333 0.00 0.00 38.96 3.01
2359 4102 1.672898 CGAACGGAGGGGGTACAAA 59.327 57.895 0.00 0.00 0.00 2.83
2360 4103 2.285024 CCGAACGGAGGGGGTACAA 61.285 63.158 7.53 0.00 37.50 2.41
2361 4104 2.681064 CCGAACGGAGGGGGTACA 60.681 66.667 7.53 0.00 37.50 2.90
2362 4105 1.332889 ATTCCGAACGGAGGGGGTAC 61.333 60.000 15.34 0.00 46.06 3.34
2363 4106 0.618393 AATTCCGAACGGAGGGGGTA 60.618 55.000 15.34 1.05 46.06 3.69
2364 4107 0.618393 TAATTCCGAACGGAGGGGGT 60.618 55.000 15.34 4.31 46.06 4.95
2365 4108 0.179065 GTAATTCCGAACGGAGGGGG 60.179 60.000 15.34 0.00 46.06 5.40
2366 4109 0.828677 AGTAATTCCGAACGGAGGGG 59.171 55.000 15.34 0.00 46.06 4.79
2367 4110 2.685850 AAGTAATTCCGAACGGAGGG 57.314 50.000 15.34 0.00 46.06 4.30
2368 4111 3.979495 CGATAAGTAATTCCGAACGGAGG 59.021 47.826 15.34 0.00 46.06 4.30
2369 4112 4.440103 CACGATAAGTAATTCCGAACGGAG 59.560 45.833 15.34 3.62 46.06 4.63
2370 4113 4.096231 TCACGATAAGTAATTCCGAACGGA 59.904 41.667 12.04 12.04 43.52 4.69
2371 4114 4.353737 TCACGATAAGTAATTCCGAACGG 58.646 43.478 6.94 6.94 0.00 4.44
2372 4115 5.268544 TCTCACGATAAGTAATTCCGAACG 58.731 41.667 4.96 0.00 0.00 3.95
2373 4116 7.306632 CCATTCTCACGATAAGTAATTCCGAAC 60.307 40.741 4.96 0.00 0.00 3.95
2374 4117 6.700081 CCATTCTCACGATAAGTAATTCCGAA 59.300 38.462 4.96 0.00 0.00 4.30
2375 4118 6.040054 TCCATTCTCACGATAAGTAATTCCGA 59.960 38.462 4.96 0.00 0.00 4.55
2376 4119 6.213677 TCCATTCTCACGATAAGTAATTCCG 58.786 40.000 0.00 0.00 0.00 4.30
2377 4120 7.657761 ACATCCATTCTCACGATAAGTAATTCC 59.342 37.037 0.00 0.00 0.00 3.01
2378 4121 8.594881 ACATCCATTCTCACGATAAGTAATTC 57.405 34.615 0.00 0.00 0.00 2.17
2380 4123 9.862371 GATACATCCATTCTCACGATAAGTAAT 57.138 33.333 0.00 0.00 0.00 1.89
2381 4124 9.078990 AGATACATCCATTCTCACGATAAGTAA 57.921 33.333 0.00 0.00 0.00 2.24
2382 4125 8.637196 AGATACATCCATTCTCACGATAAGTA 57.363 34.615 0.00 0.00 0.00 2.24
2383 4126 7.531857 AGATACATCCATTCTCACGATAAGT 57.468 36.000 0.00 0.00 0.00 2.24
2384 4127 8.951243 TCTAGATACATCCATTCTCACGATAAG 58.049 37.037 0.00 0.00 0.00 1.73
2385 4128 8.731605 GTCTAGATACATCCATTCTCACGATAA 58.268 37.037 0.00 0.00 0.00 1.75
2386 4129 7.064728 CGTCTAGATACATCCATTCTCACGATA 59.935 40.741 0.00 0.00 32.06 2.92
2387 4130 6.128145 CGTCTAGATACATCCATTCTCACGAT 60.128 42.308 0.00 0.00 32.06 3.73
2388 4131 5.179555 CGTCTAGATACATCCATTCTCACGA 59.820 44.000 0.00 0.00 32.06 4.35
2389 4132 5.049336 ACGTCTAGATACATCCATTCTCACG 60.049 44.000 0.00 0.00 34.51 4.35
2390 4133 6.320494 ACGTCTAGATACATCCATTCTCAC 57.680 41.667 0.00 0.00 0.00 3.51
2391 4134 8.637196 AATACGTCTAGATACATCCATTCTCA 57.363 34.615 0.00 0.00 0.00 3.27
2392 4135 9.915629 AAAATACGTCTAGATACATCCATTCTC 57.084 33.333 0.00 0.00 0.00 2.87
2423 4166 9.653287 ACTTGTCTCGAAAATGAATGTATCTAA 57.347 29.630 0.00 0.00 0.00 2.10
2425 4168 9.653287 TTACTTGTCTCGAAAATGAATGTATCT 57.347 29.630 0.00 0.00 0.00 1.98
2429 4172 7.957484 CGAATTACTTGTCTCGAAAATGAATGT 59.043 33.333 0.00 0.00 33.13 2.71
2430 4173 7.426456 CCGAATTACTTGTCTCGAAAATGAATG 59.574 37.037 0.00 0.00 33.13 2.67
2431 4174 7.333423 TCCGAATTACTTGTCTCGAAAATGAAT 59.667 33.333 0.00 0.00 33.13 2.57
2432 4175 6.647481 TCCGAATTACTTGTCTCGAAAATGAA 59.353 34.615 0.00 0.00 33.13 2.57
2433 4176 6.160684 TCCGAATTACTTGTCTCGAAAATGA 58.839 36.000 0.00 0.00 33.13 2.57
2434 4177 6.403333 TCCGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 33.13 2.32
2435 4178 6.400727 CGTTCCGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 33.13 1.82
2436 4179 5.107760 CGTTCCGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 33.13 2.29
2437 4180 4.383649 CGTTCCGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 33.13 3.46
2438 4181 3.916172 CGTTCCGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.13 3.71
2439 4182 3.495193 CGTTCCGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 33.13 4.04
2440 4183 2.597305 CCGTTCCGAATTACTTGTCTCG 59.403 50.000 0.00 0.00 0.00 4.04
2441 4184 3.841643 TCCGTTCCGAATTACTTGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
2442 4185 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2443 4186 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2444 4187 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2445 4188 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2446 4189 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2447 4190 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2448 4191 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2449 4192 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2450 4193 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2451 4194 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2452 4195 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2453 4196 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2454 4197 1.978454 ATAGTACTCCCTCCGTTCCG 58.022 55.000 0.00 0.00 0.00 4.30
2455 4198 4.660168 TGATATAGTACTCCCTCCGTTCC 58.340 47.826 0.00 0.00 0.00 3.62
2456 4199 5.769162 AGTTGATATAGTACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
2457 4200 5.703310 AGTTGATATAGTACTCCCTCCGTT 58.297 41.667 0.00 0.00 0.00 4.44
2458 4201 5.321934 AGTTGATATAGTACTCCCTCCGT 57.678 43.478 0.00 0.00 0.00 4.69
2459 4202 5.354792 GCTAGTTGATATAGTACTCCCTCCG 59.645 48.000 0.00 0.00 0.00 4.63
2460 4203 5.653330 GGCTAGTTGATATAGTACTCCCTCC 59.347 48.000 0.00 0.00 0.00 4.30
2461 4204 6.246919 TGGCTAGTTGATATAGTACTCCCTC 58.753 44.000 0.00 0.00 0.00 4.30
2462 4205 6.215515 TGGCTAGTTGATATAGTACTCCCT 57.784 41.667 0.00 0.00 0.00 4.20
2463 4206 7.835181 AGTATGGCTAGTTGATATAGTACTCCC 59.165 40.741 0.00 0.00 0.00 4.30
2464 4207 8.810990 AGTATGGCTAGTTGATATAGTACTCC 57.189 38.462 0.00 0.00 0.00 3.85
2465 4208 9.451002 TGAGTATGGCTAGTTGATATAGTACTC 57.549 37.037 0.00 0.00 36.50 2.59
2466 4209 9.983024 ATGAGTATGGCTAGTTGATATAGTACT 57.017 33.333 0.00 0.00 0.00 2.73
2470 4213 6.694844 CGCATGAGTATGGCTAGTTGATATAG 59.305 42.308 0.00 0.00 34.79 1.31
2506 4253 7.398047 ACAATGAGAAATCAAATCTCCCATTCA 59.602 33.333 1.45 0.00 42.14 2.57
2540 4287 9.971922 ATCTTAAGATACAAAATTTATGCAGCC 57.028 29.630 16.50 0.00 32.01 4.85
2550 4297 9.587772 CCGATCCGATATCTTAAGATACAAAAT 57.412 33.333 24.17 16.10 39.57 1.82
2551 4298 8.799367 TCCGATCCGATATCTTAAGATACAAAA 58.201 33.333 24.17 12.73 39.57 2.44
2552 4299 8.344446 TCCGATCCGATATCTTAAGATACAAA 57.656 34.615 24.17 12.43 39.57 2.83
2553 4300 7.933215 TCCGATCCGATATCTTAAGATACAA 57.067 36.000 24.17 7.98 39.57 2.41
2554 4301 7.556635 ACATCCGATCCGATATCTTAAGATACA 59.443 37.037 24.17 8.68 39.57 2.29
2555 4302 7.932335 ACATCCGATCCGATATCTTAAGATAC 58.068 38.462 24.17 17.04 39.57 2.24
2556 4303 7.228906 GGACATCCGATCCGATATCTTAAGATA 59.771 40.741 23.97 23.97 40.85 1.98
2557 4304 6.039941 GGACATCCGATCCGATATCTTAAGAT 59.960 42.308 21.28 21.28 38.51 2.40
2558 4305 5.357314 GGACATCCGATCCGATATCTTAAGA 59.643 44.000 7.82 7.82 0.00 2.10
2559 4306 5.450688 GGGACATCCGATCCGATATCTTAAG 60.451 48.000 0.34 0.00 37.08 1.85
2560 4307 4.401519 GGGACATCCGATCCGATATCTTAA 59.598 45.833 0.34 0.00 37.08 1.85
2561 4308 3.952323 GGGACATCCGATCCGATATCTTA 59.048 47.826 0.34 0.00 37.08 2.10
2562 4309 2.761208 GGGACATCCGATCCGATATCTT 59.239 50.000 0.34 0.00 37.08 2.40
2563 4310 2.379972 GGGACATCCGATCCGATATCT 58.620 52.381 0.34 0.00 37.08 1.98
2564 4311 1.409427 GGGGACATCCGATCCGATATC 59.591 57.143 0.00 0.00 37.08 1.63
2565 4312 1.486211 GGGGACATCCGATCCGATAT 58.514 55.000 0.00 0.00 37.08 1.63
2566 4313 0.613853 GGGGGACATCCGATCCGATA 60.614 60.000 0.00 0.00 37.08 2.92
2567 4314 1.913762 GGGGGACATCCGATCCGAT 60.914 63.158 0.00 0.00 37.08 4.18
2568 4315 2.523412 GGGGGACATCCGATCCGA 60.523 66.667 0.00 0.00 37.08 4.55
2569 4316 2.383245 CTTGGGGGACATCCGATCCG 62.383 65.000 0.00 0.00 37.08 4.18
2570 4317 1.451936 CTTGGGGGACATCCGATCC 59.548 63.158 0.00 0.00 36.71 3.36
2571 4318 1.054406 TCCTTGGGGGACATCCGATC 61.054 60.000 0.00 0.00 39.58 3.69
2572 4319 0.623324 TTCCTTGGGGGACATCCGAT 60.623 55.000 0.00 0.00 45.03 4.18
2573 4320 1.229690 TTCCTTGGGGGACATCCGA 60.230 57.895 0.00 0.00 45.03 4.55
2574 4321 1.077716 GTTCCTTGGGGGACATCCG 60.078 63.158 0.00 0.00 45.03 4.18
2575 4322 2.083715 TGTTCCTTGGGGGACATCC 58.916 57.895 0.00 0.00 45.62 3.51
2579 4326 2.325484 ACAAAATGTTCCTTGGGGGAC 58.675 47.619 0.00 0.00 45.03 4.46
2580 4327 2.785357 ACAAAATGTTCCTTGGGGGA 57.215 45.000 0.00 0.00 43.41 4.81
2581 4328 4.352893 AGATACAAAATGTTCCTTGGGGG 58.647 43.478 0.00 0.00 0.00 5.40
2582 4329 7.396055 TCTTAAGATACAAAATGTTCCTTGGGG 59.604 37.037 0.00 0.00 0.00 4.96
2583 4330 8.348285 TCTTAAGATACAAAATGTTCCTTGGG 57.652 34.615 0.00 0.00 0.00 4.12
2612 4359 6.362283 ACGAAATGTGTCGGAAATCAAATTTC 59.638 34.615 10.50 10.50 45.40 2.17
2613 4360 6.212955 ACGAAATGTGTCGGAAATCAAATTT 58.787 32.000 0.00 0.00 45.40 1.82
2614 4361 5.768317 ACGAAATGTGTCGGAAATCAAATT 58.232 33.333 0.00 0.00 45.40 1.82
2615 4362 5.371115 ACGAAATGTGTCGGAAATCAAAT 57.629 34.783 0.00 0.00 45.40 2.32
2616 4363 4.822036 ACGAAATGTGTCGGAAATCAAA 57.178 36.364 0.00 0.00 45.40 2.69
2617 4364 4.152759 GGTACGAAATGTGTCGGAAATCAA 59.847 41.667 0.00 0.00 45.40 2.57
2618 4365 3.680937 GGTACGAAATGTGTCGGAAATCA 59.319 43.478 0.00 0.00 45.40 2.57
2619 4366 4.254745 GGTACGAAATGTGTCGGAAATC 57.745 45.455 0.00 0.00 45.40 2.17
2634 4381 5.857092 ATGAATTCATGGCAGCGGTACGA 62.857 47.826 20.11 0.00 45.86 3.43
2635 4382 3.634502 ATGAATTCATGGCAGCGGTACG 61.635 50.000 20.11 0.00 45.78 3.67
2636 4383 1.378531 TGAATTCATGGCAGCGGTAC 58.621 50.000 3.38 0.00 0.00 3.34
2637 4384 2.346766 ATGAATTCATGGCAGCGGTA 57.653 45.000 20.11 0.00 34.83 4.02
2638 4385 1.477553 AATGAATTCATGGCAGCGGT 58.522 45.000 21.39 0.40 36.56 5.68
2639 4386 2.620115 AGTAATGAATTCATGGCAGCGG 59.380 45.455 21.39 0.00 36.56 5.52
2640 4387 3.976793 AGTAATGAATTCATGGCAGCG 57.023 42.857 21.39 0.00 36.56 5.18
2641 4388 7.031226 TCTTAAGTAATGAATTCATGGCAGC 57.969 36.000 21.39 9.97 36.56 5.25
2643 4390 8.773645 CGTATCTTAAGTAATGAATTCATGGCA 58.226 33.333 21.39 7.53 36.56 4.92
2644 4391 8.988934 TCGTATCTTAAGTAATGAATTCATGGC 58.011 33.333 21.39 16.04 36.56 4.40
2797 4638 7.473041 TCTAGACATGAGCCTCCCTATATAT 57.527 40.000 0.00 0.00 0.00 0.86
2798 4639 6.910259 TCTAGACATGAGCCTCCCTATATA 57.090 41.667 0.00 0.00 0.00 0.86
2799 4640 5.805208 TCTAGACATGAGCCTCCCTATAT 57.195 43.478 0.00 0.00 0.00 0.86
2800 4641 5.630304 CGATCTAGACATGAGCCTCCCTATA 60.630 48.000 0.00 0.00 0.00 1.31
2864 4705 7.104939 CCCAACCATACATCATCAAAATTGTT 58.895 34.615 0.00 0.00 0.00 2.83
2881 4722 4.660303 TCATCTATAGACAAGCCCAACCAT 59.340 41.667 4.10 0.00 0.00 3.55
2883 4724 4.689612 TCATCTATAGACAAGCCCAACC 57.310 45.455 4.10 0.00 0.00 3.77
2899 4740 8.929260 TTGATGACAAGCCATATTTATCATCT 57.071 30.769 11.40 0.00 40.91 2.90
2909 4750 4.321156 GCAACAGTTTGATGACAAGCCATA 60.321 41.667 0.00 0.00 37.83 2.74
2918 4759 0.874390 GAGCGGCAACAGTTTGATGA 59.126 50.000 1.45 0.00 34.24 2.92
2934 4775 1.968540 GGTGTCACCAAGGCAGAGC 60.969 63.158 17.59 0.00 38.42 4.09
2936 4777 1.451504 CAGGTGTCACCAAGGCAGA 59.548 57.895 24.02 0.00 41.95 4.26
2950 4791 0.112995 TCCCTTGCATTTCAGCAGGT 59.887 50.000 0.00 0.00 46.54 4.00
2974 4816 8.977505 CACATCGGTTCTGTTGATTTTAATTTT 58.022 29.630 0.00 0.00 0.00 1.82
2999 4841 0.882484 TGATTTTGAGCCGTCACGCA 60.882 50.000 0.00 0.00 30.10 5.24
3009 4851 4.408182 ACGGAGGGAGTATGATTTTGAG 57.592 45.455 0.00 0.00 0.00 3.02
3010 4852 4.679639 CGAACGGAGGGAGTATGATTTTGA 60.680 45.833 0.00 0.00 0.00 2.69
3011 4853 3.555956 CGAACGGAGGGAGTATGATTTTG 59.444 47.826 0.00 0.00 0.00 2.44
3012 4854 3.449737 TCGAACGGAGGGAGTATGATTTT 59.550 43.478 0.00 0.00 0.00 1.82
3013 4855 3.028850 TCGAACGGAGGGAGTATGATTT 58.971 45.455 0.00 0.00 0.00 2.17
3014 4856 2.662866 TCGAACGGAGGGAGTATGATT 58.337 47.619 0.00 0.00 0.00 2.57
3015 4857 2.359981 TCGAACGGAGGGAGTATGAT 57.640 50.000 0.00 0.00 0.00 2.45
3016 4858 2.133281 TTCGAACGGAGGGAGTATGA 57.867 50.000 0.00 0.00 0.00 2.15
3017 4859 2.953466 TTTCGAACGGAGGGAGTATG 57.047 50.000 0.00 0.00 0.00 2.39
3018 4860 5.803237 ATATTTTCGAACGGAGGGAGTAT 57.197 39.130 0.00 0.00 0.00 2.12
3019 4861 5.603170 AATATTTTCGAACGGAGGGAGTA 57.397 39.130 0.00 0.00 0.00 2.59
3020 4862 4.482952 AATATTTTCGAACGGAGGGAGT 57.517 40.909 0.00 0.00 0.00 3.85
3021 4863 4.634443 ACAAATATTTTCGAACGGAGGGAG 59.366 41.667 0.00 0.00 0.00 4.30
3022 4864 4.581868 ACAAATATTTTCGAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
3023 4865 4.201881 GGACAAATATTTTCGAACGGAGGG 60.202 45.833 0.00 0.00 0.00 4.30
3024 4866 4.201881 GGGACAAATATTTTCGAACGGAGG 60.202 45.833 0.00 0.00 0.00 4.30
3025 4867 4.393680 TGGGACAAATATTTTCGAACGGAG 59.606 41.667 0.00 0.00 31.92 4.63
3026 4868 4.325119 TGGGACAAATATTTTCGAACGGA 58.675 39.130 0.00 0.00 31.92 4.69
3027 4869 4.688511 TGGGACAAATATTTTCGAACGG 57.311 40.909 0.00 0.00 31.92 4.44
3100 4942 8.893727 CCCGAAATACTTGTCAAAGAAATAGAT 58.106 33.333 0.00 0.00 36.84 1.98
3101 4943 8.098286 TCCCGAAATACTTGTCAAAGAAATAGA 58.902 33.333 0.00 0.00 36.84 1.98
3102 4944 8.175716 GTCCCGAAATACTTGTCAAAGAAATAG 58.824 37.037 0.00 0.00 36.84 1.73
3103 4945 7.662258 TGTCCCGAAATACTTGTCAAAGAAATA 59.338 33.333 0.00 0.00 36.84 1.40
3104 4946 6.488683 TGTCCCGAAATACTTGTCAAAGAAAT 59.511 34.615 0.00 0.00 36.84 2.17
3105 4947 5.823570 TGTCCCGAAATACTTGTCAAAGAAA 59.176 36.000 0.00 0.00 36.84 2.52
3106 4948 5.369833 TGTCCCGAAATACTTGTCAAAGAA 58.630 37.500 0.00 0.00 36.84 2.52
3107 4949 4.963373 TGTCCCGAAATACTTGTCAAAGA 58.037 39.130 0.00 0.00 36.84 2.52
3108 4950 4.994852 TCTGTCCCGAAATACTTGTCAAAG 59.005 41.667 0.00 0.00 39.49 2.77
3109 4951 4.963373 TCTGTCCCGAAATACTTGTCAAA 58.037 39.130 0.00 0.00 0.00 2.69
3110 4952 4.562757 CCTCTGTCCCGAAATACTTGTCAA 60.563 45.833 0.00 0.00 0.00 3.18
3111 4953 3.056107 CCTCTGTCCCGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
3112 4954 3.522553 CCTCTGTCCCGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3113 4955 2.236395 CCCTCTGTCCCGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3114 4956 2.500098 TCCCTCTGTCCCGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3115 4957 2.766828 CTCCCTCTGTCCCGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
3116 4958 2.292323 ACTCCCTCTGTCCCGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3117 4959 2.108970 ACTCCCTCTGTCCCGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3118 4960 2.544844 ACTCCCTCTGTCCCGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
3119 4961 2.108970 GTACTCCCTCTGTCCCGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
3120 4962 1.203087 TGTACTCCCTCTGTCCCGAAA 60.203 52.381 0.00 0.00 0.00 3.46
3121 4963 0.406750 TGTACTCCCTCTGTCCCGAA 59.593 55.000 0.00 0.00 0.00 4.30
3122 4964 0.629596 ATGTACTCCCTCTGTCCCGA 59.370 55.000 0.00 0.00 0.00 5.14
3123 4965 0.747255 CATGTACTCCCTCTGTCCCG 59.253 60.000 0.00 0.00 0.00 5.14
3124 4966 2.160721 TCATGTACTCCCTCTGTCCC 57.839 55.000 0.00 0.00 0.00 4.46
3125 4967 3.366396 TCTTCATGTACTCCCTCTGTCC 58.634 50.000 0.00 0.00 0.00 4.02
3126 4968 6.716934 TTATCTTCATGTACTCCCTCTGTC 57.283 41.667 0.00 0.00 0.00 3.51
3127 4969 8.964533 ATATTATCTTCATGTACTCCCTCTGT 57.035 34.615 0.00 0.00 0.00 3.41
3143 4985 9.314133 GGCCTTATCCCAAGAAAATATTATCTT 57.686 33.333 0.00 0.00 36.35 2.40
3144 4986 8.682514 AGGCCTTATCCCAAGAAAATATTATCT 58.317 33.333 0.00 0.00 0.00 1.98
3145 4987 8.885693 AGGCCTTATCCCAAGAAAATATTATC 57.114 34.615 0.00 0.00 0.00 1.75
3146 4988 9.981460 CTAGGCCTTATCCCAAGAAAATATTAT 57.019 33.333 12.58 0.00 0.00 1.28
3147 4989 8.955794 ACTAGGCCTTATCCCAAGAAAATATTA 58.044 33.333 12.58 0.00 0.00 0.98
3148 4990 7.826747 ACTAGGCCTTATCCCAAGAAAATATT 58.173 34.615 12.58 0.00 0.00 1.28
3149 4991 7.408013 ACTAGGCCTTATCCCAAGAAAATAT 57.592 36.000 12.58 0.00 0.00 1.28
3150 4992 6.841781 ACTAGGCCTTATCCCAAGAAAATA 57.158 37.500 12.58 0.00 0.00 1.40
3151 4993 5.734031 ACTAGGCCTTATCCCAAGAAAAT 57.266 39.130 12.58 0.00 0.00 1.82
3152 4994 5.397559 GCTACTAGGCCTTATCCCAAGAAAA 60.398 44.000 12.58 0.00 0.00 2.29
3153 4995 4.102681 GCTACTAGGCCTTATCCCAAGAAA 59.897 45.833 12.58 0.00 0.00 2.52
3154 4996 3.646637 GCTACTAGGCCTTATCCCAAGAA 59.353 47.826 12.58 0.00 0.00 2.52
3155 4997 3.240302 GCTACTAGGCCTTATCCCAAGA 58.760 50.000 12.58 0.00 0.00 3.02
3156 4998 2.028930 CGCTACTAGGCCTTATCCCAAG 60.029 54.545 12.58 1.84 0.00 3.61
3157 4999 1.968493 CGCTACTAGGCCTTATCCCAA 59.032 52.381 12.58 0.00 0.00 4.12
3158 5000 1.629043 CGCTACTAGGCCTTATCCCA 58.371 55.000 12.58 0.00 0.00 4.37
3159 5001 0.246910 GCGCTACTAGGCCTTATCCC 59.753 60.000 12.58 0.00 0.00 3.85
3160 5002 3.816580 GCGCTACTAGGCCTTATCC 57.183 57.895 12.58 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.