Multiple sequence alignment - TraesCS1B01G078000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G078000 chr1B 100.000 2405 0 0 1 2405 61008740 61006336 0.000000e+00 4442.0
1 TraesCS1B01G078000 chr1B 97.183 71 1 1 1488 1557 61051952 61051882 4.200000e-23 119.0
2 TraesCS1B01G078000 chr1B 100.000 28 0 0 1530 1557 61016975 61016948 4.000000e-03 52.8
3 TraesCS1B01G078000 chr5A 88.110 1455 163 5 1 1453 548990826 548992272 0.000000e+00 1720.0
4 TraesCS1B01G078000 chr5A 88.398 181 20 1 2091 2271 277324958 277325137 1.450000e-52 217.0
5 TraesCS1B01G078000 chr6A 93.186 1086 69 4 337 1418 85263078 85264162 0.000000e+00 1591.0
6 TraesCS1B01G078000 chr2D 87.518 1378 168 2 1 1377 440627818 440629192 0.000000e+00 1589.0
7 TraesCS1B01G078000 chr2D 82.784 1336 215 12 3 1332 370244853 370243527 0.000000e+00 1179.0
8 TraesCS1B01G078000 chr2D 97.872 188 4 0 2091 2278 323523229 323523416 2.310000e-85 326.0
9 TraesCS1B01G078000 chr2D 93.103 145 9 1 1946 2090 323522971 323523114 6.740000e-51 211.0
10 TraesCS1B01G078000 chr2D 95.614 114 5 0 2292 2405 323524813 323524926 1.470000e-42 183.0
11 TraesCS1B01G078000 chr5B 86.592 1432 167 9 4 1434 294079404 294080811 0.000000e+00 1557.0
12 TraesCS1B01G078000 chr5B 87.293 181 22 1 2091 2271 55500638 55500459 3.130000e-49 206.0
13 TraesCS1B01G078000 chr7D 95.987 922 33 3 1 919 577319244 577320164 0.000000e+00 1495.0
14 TraesCS1B01G078000 chr6D 85.959 1403 191 5 7 1406 81587229 81588628 0.000000e+00 1495.0
15 TraesCS1B01G078000 chr7B 84.932 1407 210 2 1 1406 616422723 616421318 0.000000e+00 1423.0
16 TraesCS1B01G078000 chr1D 88.639 933 105 1 505 1436 367851473 367850541 0.000000e+00 1134.0
17 TraesCS1B01G078000 chr1D 85.507 69 4 3 1490 1557 41309747 41309684 1.540000e-07 67.6
18 TraesCS1B01G078000 chr3B 80.183 1090 207 6 397 1484 36461966 36460884 0.000000e+00 808.0
19 TraesCS1B01G078000 chr3A 86.243 189 25 1 2091 2279 746555267 746555454 1.130000e-48 204.0
20 TraesCS1B01G078000 chr3A 85.279 197 15 5 1908 2091 746555013 746555208 8.780000e-45 191.0
21 TraesCS1B01G078000 chr4A 85.714 189 26 1 2091 2279 474920228 474920415 5.240000e-47 198.0
22 TraesCS1B01G078000 chr1A 86.188 181 24 1 2091 2271 376980317 376980138 6.780000e-46 195.0
23 TraesCS1B01G078000 chr2A 84.577 201 15 4 1906 2091 104887942 104888141 4.080000e-43 185.0
24 TraesCS1B01G078000 chr2A 86.000 150 18 3 1949 2098 665831991 665831845 8.900000e-35 158.0
25 TraesCS1B01G078000 chr6B 83.553 152 14 6 1949 2090 11192280 11192130 5.390000e-27 132.0
26 TraesCS1B01G078000 chr4D 91.398 93 7 1 2275 2366 439879057 439878965 2.510000e-25 126.0
27 TraesCS1B01G078000 chr5D 90.769 65 3 2 1419 1483 560389468 560389407 1.530000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G078000 chr1B 61006336 61008740 2404 True 4442 4442 100.000000 1 2405 1 chr1B.!!$R1 2404
1 TraesCS1B01G078000 chr5A 548990826 548992272 1446 False 1720 1720 88.110000 1 1453 1 chr5A.!!$F2 1452
2 TraesCS1B01G078000 chr6A 85263078 85264162 1084 False 1591 1591 93.186000 337 1418 1 chr6A.!!$F1 1081
3 TraesCS1B01G078000 chr2D 440627818 440629192 1374 False 1589 1589 87.518000 1 1377 1 chr2D.!!$F1 1376
4 TraesCS1B01G078000 chr2D 370243527 370244853 1326 True 1179 1179 82.784000 3 1332 1 chr2D.!!$R1 1329
5 TraesCS1B01G078000 chr2D 323522971 323524926 1955 False 240 326 95.529667 1946 2405 3 chr2D.!!$F2 459
6 TraesCS1B01G078000 chr5B 294079404 294080811 1407 False 1557 1557 86.592000 4 1434 1 chr5B.!!$F1 1430
7 TraesCS1B01G078000 chr7D 577319244 577320164 920 False 1495 1495 95.987000 1 919 1 chr7D.!!$F1 918
8 TraesCS1B01G078000 chr6D 81587229 81588628 1399 False 1495 1495 85.959000 7 1406 1 chr6D.!!$F1 1399
9 TraesCS1B01G078000 chr7B 616421318 616422723 1405 True 1423 1423 84.932000 1 1406 1 chr7B.!!$R1 1405
10 TraesCS1B01G078000 chr1D 367850541 367851473 932 True 1134 1134 88.639000 505 1436 1 chr1D.!!$R2 931
11 TraesCS1B01G078000 chr3B 36460884 36461966 1082 True 808 808 80.183000 397 1484 1 chr3B.!!$R1 1087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 340 0.749818 TGCCAACGAAACTTGCTCCA 60.75 50.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 1640 0.033208 GGACAATGGGGCCAGATGAA 60.033 55.0 4.39 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.568072 ACCATTACTAGCCACAACATCA 57.432 40.909 0.00 0.00 0.00 3.07
335 340 0.749818 TGCCAACGAAACTTGCTCCA 60.750 50.000 0.00 0.00 0.00 3.86
447 454 6.849085 TTGCCTTCTAATGAAATTGCCTTA 57.151 33.333 0.00 0.00 36.99 2.69
465 473 6.883744 TGCCTTAAAACTTCTCCAAAAACAT 58.116 32.000 0.00 0.00 0.00 2.71
483 491 4.591321 ACATGACTTACCATGGGTCAAT 57.409 40.909 21.48 12.75 46.06 2.57
735 744 5.652518 TCACATGTCATGCATAATGGTTTG 58.347 37.500 12.91 0.06 36.86 2.93
749 758 1.416030 TGGTTTGCTCACTACTCTGCA 59.584 47.619 0.00 0.00 0.00 4.41
781 790 7.275920 CCTAACCAATGTTGCTTCTATAGAGT 58.724 38.462 2.02 0.00 35.87 3.24
795 804 7.571428 GCTTCTATAGAGTTTGCGTCTGTTTTT 60.571 37.037 2.02 0.00 0.00 1.94
871 880 1.316706 CGGCTCTTCCTTCTCCTCGT 61.317 60.000 0.00 0.00 0.00 4.18
1037 1048 4.466370 TCGTAAGACCATCACCTCTGATTT 59.534 41.667 0.00 0.00 45.01 2.17
1296 1307 3.053842 ACACACCCCTAGATACTCTTCGA 60.054 47.826 0.00 0.00 0.00 3.71
1321 1332 9.952341 GAAACATTATTTTGGATTTTACGCTTC 57.048 29.630 0.00 0.00 0.00 3.86
1325 1336 2.188062 TTGGATTTTACGCTTCGGGT 57.812 45.000 0.00 0.00 0.00 5.28
1363 1375 1.915228 GTCAATAGGGAGGCTGCCA 59.085 57.895 27.71 13.40 0.00 4.92
1450 1463 6.681729 TGAGTAATATATTCAGGTGGGGAC 57.318 41.667 0.00 0.00 0.00 4.46
1477 1490 1.689273 CCCCCGGTGATTGTTCAAAAA 59.311 47.619 0.00 0.00 32.48 1.94
1501 1514 5.540400 AAAACCCATGGATTGCTGATATG 57.460 39.130 15.22 0.00 0.00 1.78
1502 1515 3.165087 ACCCATGGATTGCTGATATGG 57.835 47.619 15.22 0.00 38.37 2.74
1503 1516 2.448194 ACCCATGGATTGCTGATATGGT 59.552 45.455 15.22 0.00 37.24 3.55
1504 1517 2.823747 CCCATGGATTGCTGATATGGTG 59.176 50.000 15.22 0.00 37.24 4.17
1505 1518 2.230508 CCATGGATTGCTGATATGGTGC 59.769 50.000 5.56 0.00 34.88 5.01
1506 1519 1.985473 TGGATTGCTGATATGGTGCC 58.015 50.000 0.00 0.00 0.00 5.01
1507 1520 1.214923 TGGATTGCTGATATGGTGCCA 59.785 47.619 0.00 0.00 0.00 4.92
1508 1521 2.158430 TGGATTGCTGATATGGTGCCAT 60.158 45.455 8.89 8.89 40.19 4.40
1509 1522 2.230508 GGATTGCTGATATGGTGCCATG 59.769 50.000 13.57 0.00 37.82 3.66
1510 1523 2.732844 TTGCTGATATGGTGCCATGA 57.267 45.000 13.57 0.00 37.82 3.07
1511 1524 1.971481 TGCTGATATGGTGCCATGAC 58.029 50.000 13.57 7.93 37.82 3.06
1512 1525 1.242076 GCTGATATGGTGCCATGACC 58.758 55.000 13.57 0.00 37.82 4.02
1518 1531 3.761896 TGGTGCCATGACCATTGAA 57.238 47.368 2.18 0.00 41.30 2.69
1519 1532 1.548081 TGGTGCCATGACCATTGAAG 58.452 50.000 2.18 0.00 41.30 3.02
1520 1533 1.203038 TGGTGCCATGACCATTGAAGT 60.203 47.619 2.18 0.00 41.30 3.01
1521 1534 1.203052 GGTGCCATGACCATTGAAGTG 59.797 52.381 0.00 0.00 35.88 3.16
1522 1535 2.161855 GTGCCATGACCATTGAAGTGA 58.838 47.619 0.00 0.00 0.00 3.41
1523 1536 2.756760 GTGCCATGACCATTGAAGTGAT 59.243 45.455 0.00 0.00 0.00 3.06
1524 1537 2.756207 TGCCATGACCATTGAAGTGATG 59.244 45.455 0.00 0.00 0.00 3.07
1525 1538 3.018856 GCCATGACCATTGAAGTGATGA 58.981 45.455 0.00 0.00 31.34 2.92
1526 1539 3.444742 GCCATGACCATTGAAGTGATGAA 59.555 43.478 0.00 0.00 31.34 2.57
1527 1540 4.676196 GCCATGACCATTGAAGTGATGAAC 60.676 45.833 0.00 0.00 31.34 3.18
1528 1541 4.142315 CCATGACCATTGAAGTGATGAACC 60.142 45.833 0.00 0.00 31.34 3.62
1529 1542 4.097551 TGACCATTGAAGTGATGAACCA 57.902 40.909 0.00 0.00 0.00 3.67
1530 1543 4.468713 TGACCATTGAAGTGATGAACCAA 58.531 39.130 0.00 0.00 0.00 3.67
1531 1544 4.278170 TGACCATTGAAGTGATGAACCAAC 59.722 41.667 0.00 0.00 0.00 3.77
1532 1545 3.573967 ACCATTGAAGTGATGAACCAACC 59.426 43.478 0.00 0.00 0.00 3.77
1533 1546 3.573538 CCATTGAAGTGATGAACCAACCA 59.426 43.478 0.00 0.00 0.00 3.67
1534 1547 4.039004 CCATTGAAGTGATGAACCAACCAA 59.961 41.667 0.00 0.00 0.00 3.67
1535 1548 4.647424 TTGAAGTGATGAACCAACCAAC 57.353 40.909 0.00 0.00 0.00 3.77
1536 1549 2.955660 TGAAGTGATGAACCAACCAACC 59.044 45.455 0.00 0.00 0.00 3.77
1537 1550 2.746279 AGTGATGAACCAACCAACCA 57.254 45.000 0.00 0.00 0.00 3.67
1538 1551 3.025322 AGTGATGAACCAACCAACCAA 57.975 42.857 0.00 0.00 0.00 3.67
1539 1552 2.693074 AGTGATGAACCAACCAACCAAC 59.307 45.455 0.00 0.00 0.00 3.77
1540 1553 2.035632 TGATGAACCAACCAACCAACC 58.964 47.619 0.00 0.00 0.00 3.77
1541 1554 2.035632 GATGAACCAACCAACCAACCA 58.964 47.619 0.00 0.00 0.00 3.67
1542 1555 1.479709 TGAACCAACCAACCAACCAG 58.520 50.000 0.00 0.00 0.00 4.00
1543 1556 0.104120 GAACCAACCAACCAACCAGC 59.896 55.000 0.00 0.00 0.00 4.85
1544 1557 1.671901 AACCAACCAACCAACCAGCG 61.672 55.000 0.00 0.00 0.00 5.18
1545 1558 2.727544 CAACCAACCAACCAGCGG 59.272 61.111 0.00 0.00 0.00 5.52
1546 1559 1.826054 CAACCAACCAACCAGCGGA 60.826 57.895 1.50 0.00 0.00 5.54
1547 1560 1.826487 AACCAACCAACCAGCGGAC 60.826 57.895 1.50 0.00 0.00 4.79
1548 1561 2.983592 CCAACCAACCAGCGGACC 60.984 66.667 1.50 0.00 0.00 4.46
1549 1562 3.353836 CAACCAACCAGCGGACCG 61.354 66.667 10.29 10.29 0.00 4.79
1550 1563 4.636435 AACCAACCAGCGGACCGG 62.636 66.667 17.22 0.00 0.00 5.28
1560 1573 4.379243 CGGACCGGCTGCTGAGTT 62.379 66.667 10.70 0.00 0.00 3.01
1561 1574 2.032681 GGACCGGCTGCTGAGTTT 59.967 61.111 10.70 0.00 0.00 2.66
1562 1575 2.035442 GGACCGGCTGCTGAGTTTC 61.035 63.158 10.70 0.70 0.00 2.78
1563 1576 1.004440 GACCGGCTGCTGAGTTTCT 60.004 57.895 10.70 0.00 0.00 2.52
1564 1577 0.246635 GACCGGCTGCTGAGTTTCTA 59.753 55.000 10.70 0.00 0.00 2.10
1565 1578 0.247736 ACCGGCTGCTGAGTTTCTAG 59.752 55.000 10.70 0.00 0.00 2.43
1566 1579 1.086634 CCGGCTGCTGAGTTTCTAGC 61.087 60.000 10.70 0.00 40.29 3.42
1567 1580 0.390340 CGGCTGCTGAGTTTCTAGCA 60.390 55.000 1.17 0.00 46.79 3.49
1574 1587 5.772825 TGCTGAGTTTCTAGCATGTTTTT 57.227 34.783 0.00 0.00 44.36 1.94
1595 1608 1.047801 TTTTTGCTTCCTGCCTTCCC 58.952 50.000 0.00 0.00 42.00 3.97
1596 1609 0.188342 TTTTGCTTCCTGCCTTCCCT 59.812 50.000 0.00 0.00 42.00 4.20
1597 1610 0.188342 TTTGCTTCCTGCCTTCCCTT 59.812 50.000 0.00 0.00 42.00 3.95
1598 1611 0.251341 TTGCTTCCTGCCTTCCCTTC 60.251 55.000 0.00 0.00 42.00 3.46
1599 1612 1.136329 TGCTTCCTGCCTTCCCTTCT 61.136 55.000 0.00 0.00 42.00 2.85
1600 1613 0.038890 GCTTCCTGCCTTCCCTTCTT 59.961 55.000 0.00 0.00 35.15 2.52
1601 1614 1.548809 GCTTCCTGCCTTCCCTTCTTT 60.549 52.381 0.00 0.00 35.15 2.52
1602 1615 2.290960 GCTTCCTGCCTTCCCTTCTTTA 60.291 50.000 0.00 0.00 35.15 1.85
1603 1616 3.615155 CTTCCTGCCTTCCCTTCTTTAG 58.385 50.000 0.00 0.00 0.00 1.85
1604 1617 2.632537 TCCTGCCTTCCCTTCTTTAGT 58.367 47.619 0.00 0.00 0.00 2.24
1605 1618 2.986728 TCCTGCCTTCCCTTCTTTAGTT 59.013 45.455 0.00 0.00 0.00 2.24
1606 1619 3.009143 TCCTGCCTTCCCTTCTTTAGTTC 59.991 47.826 0.00 0.00 0.00 3.01
1607 1620 3.009584 CCTGCCTTCCCTTCTTTAGTTCT 59.990 47.826 0.00 0.00 0.00 3.01
1608 1621 4.507512 CCTGCCTTCCCTTCTTTAGTTCTT 60.508 45.833 0.00 0.00 0.00 2.52
1609 1622 5.061721 TGCCTTCCCTTCTTTAGTTCTTT 57.938 39.130 0.00 0.00 0.00 2.52
1610 1623 5.454966 TGCCTTCCCTTCTTTAGTTCTTTT 58.545 37.500 0.00 0.00 0.00 2.27
1611 1624 5.301805 TGCCTTCCCTTCTTTAGTTCTTTTG 59.698 40.000 0.00 0.00 0.00 2.44
1612 1625 5.535030 GCCTTCCCTTCTTTAGTTCTTTTGA 59.465 40.000 0.00 0.00 0.00 2.69
1613 1626 6.040504 GCCTTCCCTTCTTTAGTTCTTTTGAA 59.959 38.462 0.00 0.00 35.84 2.69
1614 1627 7.417456 GCCTTCCCTTCTTTAGTTCTTTTGAAA 60.417 37.037 0.00 0.00 40.53 2.69
1615 1628 7.921214 CCTTCCCTTCTTTAGTTCTTTTGAAAC 59.079 37.037 0.00 0.00 40.53 2.78
1616 1629 7.023197 TCCCTTCTTTAGTTCTTTTGAAACG 57.977 36.000 0.00 0.00 40.53 3.60
1617 1630 6.038936 TCCCTTCTTTAGTTCTTTTGAAACGG 59.961 38.462 0.00 0.00 40.53 4.44
1618 1631 6.038936 CCCTTCTTTAGTTCTTTTGAAACGGA 59.961 38.462 0.00 0.00 40.53 4.69
1619 1632 6.910972 CCTTCTTTAGTTCTTTTGAAACGGAC 59.089 38.462 0.00 0.00 40.53 4.79
1620 1633 6.039781 TCTTTAGTTCTTTTGAAACGGACG 57.960 37.500 0.00 0.00 40.53 4.79
1621 1634 4.799419 TTAGTTCTTTTGAAACGGACGG 57.201 40.909 0.00 0.00 40.53 4.79
1622 1635 2.908916 AGTTCTTTTGAAACGGACGGA 58.091 42.857 0.00 0.00 40.53 4.69
1623 1636 3.473625 AGTTCTTTTGAAACGGACGGAT 58.526 40.909 0.00 0.00 40.53 4.18
1624 1637 3.881089 AGTTCTTTTGAAACGGACGGATT 59.119 39.130 0.00 0.00 40.53 3.01
1625 1638 4.337274 AGTTCTTTTGAAACGGACGGATTT 59.663 37.500 0.00 0.00 40.53 2.17
1626 1639 4.477302 TCTTTTGAAACGGACGGATTTC 57.523 40.909 0.00 0.00 35.73 2.17
1627 1640 4.131596 TCTTTTGAAACGGACGGATTTCT 58.868 39.130 8.55 0.00 36.09 2.52
1628 1641 4.577283 TCTTTTGAAACGGACGGATTTCTT 59.423 37.500 8.55 0.00 36.09 2.52
1629 1642 4.477302 TTTGAAACGGACGGATTTCTTC 57.523 40.909 8.55 0.00 36.09 2.87
1630 1643 3.114668 TGAAACGGACGGATTTCTTCA 57.885 42.857 8.55 0.00 36.09 3.02
1631 1644 3.670625 TGAAACGGACGGATTTCTTCAT 58.329 40.909 8.55 0.00 36.09 2.57
1632 1645 3.682858 TGAAACGGACGGATTTCTTCATC 59.317 43.478 8.55 0.00 36.09 2.92
1633 1646 3.611766 AACGGACGGATTTCTTCATCT 57.388 42.857 0.00 0.00 0.00 2.90
1634 1647 2.893637 ACGGACGGATTTCTTCATCTG 58.106 47.619 0.00 0.00 35.85 2.90
1635 1648 2.205074 CGGACGGATTTCTTCATCTGG 58.795 52.381 0.00 0.00 34.24 3.86
1636 1649 1.943340 GGACGGATTTCTTCATCTGGC 59.057 52.381 0.00 0.00 36.88 4.85
1637 1650 1.943340 GACGGATTTCTTCATCTGGCC 59.057 52.381 0.00 0.00 31.88 5.36
1638 1651 1.312815 CGGATTTCTTCATCTGGCCC 58.687 55.000 0.00 0.00 0.00 5.80
1639 1652 1.697284 GGATTTCTTCATCTGGCCCC 58.303 55.000 0.00 0.00 0.00 5.80
1640 1653 1.063717 GGATTTCTTCATCTGGCCCCA 60.064 52.381 0.00 0.00 0.00 4.96
1641 1654 2.425392 GGATTTCTTCATCTGGCCCCAT 60.425 50.000 0.00 0.00 0.00 4.00
1642 1655 2.925966 TTTCTTCATCTGGCCCCATT 57.074 45.000 0.00 0.00 0.00 3.16
1643 1656 2.148446 TTCTTCATCTGGCCCCATTG 57.852 50.000 0.00 0.00 0.00 2.82
1644 1657 1.002069 TCTTCATCTGGCCCCATTGT 58.998 50.000 0.00 0.00 0.00 2.71
1645 1658 1.064463 TCTTCATCTGGCCCCATTGTC 60.064 52.381 0.00 0.00 0.00 3.18
1646 1659 0.033208 TTCATCTGGCCCCATTGTCC 60.033 55.000 0.00 0.00 0.00 4.02
1647 1660 0.920763 TCATCTGGCCCCATTGTCCT 60.921 55.000 0.00 0.00 0.00 3.85
1648 1661 0.466922 CATCTGGCCCCATTGTCCTC 60.467 60.000 0.00 0.00 0.00 3.71
1649 1662 0.625683 ATCTGGCCCCATTGTCCTCT 60.626 55.000 0.00 0.00 0.00 3.69
1650 1663 0.846427 TCTGGCCCCATTGTCCTCTT 60.846 55.000 0.00 0.00 0.00 2.85
1651 1664 0.682209 CTGGCCCCATTGTCCTCTTG 60.682 60.000 0.00 0.00 0.00 3.02
1652 1665 1.384191 GGCCCCATTGTCCTCTTGT 59.616 57.895 0.00 0.00 0.00 3.16
1653 1666 0.967380 GGCCCCATTGTCCTCTTGTG 60.967 60.000 0.00 0.00 0.00 3.33
1654 1667 0.251341 GCCCCATTGTCCTCTTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
1655 1668 1.538047 CCCCATTGTCCTCTTGTGTG 58.462 55.000 0.00 0.00 0.00 3.82
1656 1669 1.073763 CCCCATTGTCCTCTTGTGTGA 59.926 52.381 0.00 0.00 0.00 3.58
1657 1670 2.291153 CCCCATTGTCCTCTTGTGTGAT 60.291 50.000 0.00 0.00 0.00 3.06
1658 1671 3.424703 CCCATTGTCCTCTTGTGTGATT 58.575 45.455 0.00 0.00 0.00 2.57
1659 1672 3.441572 CCCATTGTCCTCTTGTGTGATTC 59.558 47.826 0.00 0.00 0.00 2.52
1660 1673 3.441572 CCATTGTCCTCTTGTGTGATTCC 59.558 47.826 0.00 0.00 0.00 3.01
1661 1674 4.330250 CATTGTCCTCTTGTGTGATTCCT 58.670 43.478 0.00 0.00 0.00 3.36
1662 1675 4.437682 TTGTCCTCTTGTGTGATTCCTT 57.562 40.909 0.00 0.00 0.00 3.36
1663 1676 3.743521 TGTCCTCTTGTGTGATTCCTTG 58.256 45.455 0.00 0.00 0.00 3.61
1664 1677 3.077359 GTCCTCTTGTGTGATTCCTTGG 58.923 50.000 0.00 0.00 0.00 3.61
1665 1678 1.815003 CCTCTTGTGTGATTCCTTGGC 59.185 52.381 0.00 0.00 0.00 4.52
1666 1679 2.507484 CTCTTGTGTGATTCCTTGGCA 58.493 47.619 0.00 0.00 0.00 4.92
1667 1680 2.886523 CTCTTGTGTGATTCCTTGGCAA 59.113 45.455 0.00 0.00 0.00 4.52
1668 1681 2.622942 TCTTGTGTGATTCCTTGGCAAC 59.377 45.455 0.00 0.00 0.00 4.17
1669 1682 2.363306 TGTGTGATTCCTTGGCAACT 57.637 45.000 0.00 0.00 37.61 3.16
1670 1683 2.229792 TGTGTGATTCCTTGGCAACTC 58.770 47.619 0.00 0.00 37.61 3.01
1671 1684 1.197721 GTGTGATTCCTTGGCAACTCG 59.802 52.381 0.00 0.00 37.61 4.18
1672 1685 0.804989 GTGATTCCTTGGCAACTCGG 59.195 55.000 0.00 0.00 37.61 4.63
1673 1686 0.960364 TGATTCCTTGGCAACTCGGC 60.960 55.000 0.00 0.00 41.67 5.54
1682 1695 3.781307 CAACTCGGCCCGGATGGA 61.781 66.667 0.73 0.00 37.49 3.41
1683 1696 3.006728 AACTCGGCCCGGATGGAA 61.007 61.111 0.73 0.00 37.49 3.53
1684 1697 2.375345 AACTCGGCCCGGATGGAAT 61.375 57.895 0.73 0.00 37.49 3.01
1685 1698 1.921869 AACTCGGCCCGGATGGAATT 61.922 55.000 0.73 0.00 37.49 2.17
1686 1699 1.152963 CTCGGCCCGGATGGAATTT 60.153 57.895 0.73 0.00 37.49 1.82
1687 1700 0.751643 CTCGGCCCGGATGGAATTTT 60.752 55.000 0.73 0.00 37.49 1.82
1688 1701 1.034838 TCGGCCCGGATGGAATTTTG 61.035 55.000 0.73 0.00 37.49 2.44
1689 1702 1.822615 GGCCCGGATGGAATTTTGG 59.177 57.895 0.73 0.00 37.49 3.28
1690 1703 1.685355 GGCCCGGATGGAATTTTGGG 61.685 60.000 0.73 0.00 37.49 4.12
1691 1704 1.822615 CCCGGATGGAATTTTGGGC 59.177 57.895 0.73 0.00 37.49 5.36
1692 1705 1.685355 CCCGGATGGAATTTTGGGCC 61.685 60.000 0.73 0.00 37.49 5.80
1693 1706 1.437160 CGGATGGAATTTTGGGCCG 59.563 57.895 0.00 0.00 0.00 6.13
1694 1707 1.034838 CGGATGGAATTTTGGGCCGA 61.035 55.000 0.00 0.00 39.62 5.54
1695 1708 0.459899 GGATGGAATTTTGGGCCGAC 59.540 55.000 0.00 0.00 0.00 4.79
1696 1709 1.474330 GATGGAATTTTGGGCCGACT 58.526 50.000 0.00 0.00 0.00 4.18
1697 1710 1.405463 GATGGAATTTTGGGCCGACTC 59.595 52.381 0.00 0.00 0.00 3.36
1698 1711 0.111446 TGGAATTTTGGGCCGACTCA 59.889 50.000 0.00 0.00 0.00 3.41
1699 1712 1.253100 GGAATTTTGGGCCGACTCAA 58.747 50.000 0.00 0.00 0.00 3.02
1700 1713 1.067846 GGAATTTTGGGCCGACTCAAC 60.068 52.381 0.00 0.00 0.00 3.18
1701 1714 1.886542 GAATTTTGGGCCGACTCAACT 59.113 47.619 0.00 0.00 0.00 3.16
1702 1715 1.534729 ATTTTGGGCCGACTCAACTC 58.465 50.000 0.00 0.00 0.00 3.01
1703 1716 0.536460 TTTTGGGCCGACTCAACTCC 60.536 55.000 0.00 0.00 0.00 3.85
1704 1717 2.406002 TTTGGGCCGACTCAACTCCC 62.406 60.000 0.00 0.00 37.49 4.30
1705 1718 3.319198 GGGCCGACTCAACTCCCA 61.319 66.667 0.00 0.00 36.96 4.37
1706 1719 2.747686 GGCCGACTCAACTCCCAA 59.252 61.111 0.00 0.00 0.00 4.12
1707 1720 1.671379 GGCCGACTCAACTCCCAAC 60.671 63.158 0.00 0.00 0.00 3.77
1708 1721 1.070786 GCCGACTCAACTCCCAACA 59.929 57.895 0.00 0.00 0.00 3.33
1709 1722 0.951040 GCCGACTCAACTCCCAACAG 60.951 60.000 0.00 0.00 0.00 3.16
1710 1723 0.951040 CCGACTCAACTCCCAACAGC 60.951 60.000 0.00 0.00 0.00 4.40
1711 1724 0.034059 CGACTCAACTCCCAACAGCT 59.966 55.000 0.00 0.00 0.00 4.24
1712 1725 1.272490 CGACTCAACTCCCAACAGCTA 59.728 52.381 0.00 0.00 0.00 3.32
1713 1726 2.689646 GACTCAACTCCCAACAGCTAC 58.310 52.381 0.00 0.00 0.00 3.58
1714 1727 2.037251 GACTCAACTCCCAACAGCTACA 59.963 50.000 0.00 0.00 0.00 2.74
1715 1728 2.037772 ACTCAACTCCCAACAGCTACAG 59.962 50.000 0.00 0.00 0.00 2.74
1716 1729 1.160137 CAACTCCCAACAGCTACAGC 58.840 55.000 0.00 0.00 42.49 4.40
1726 1739 2.408022 GCTACAGCTGCTGCATGC 59.592 61.111 28.39 23.69 42.74 4.06
1727 1740 3.108343 CTACAGCTGCTGCATGCC 58.892 61.111 28.39 0.28 42.74 4.40
1728 1741 1.747745 CTACAGCTGCTGCATGCCA 60.748 57.895 28.39 5.80 42.74 4.92
1729 1742 1.989966 CTACAGCTGCTGCATGCCAC 61.990 60.000 28.39 7.73 42.74 5.01
1730 1743 4.129737 CAGCTGCTGCATGCCACC 62.130 66.667 17.73 3.71 42.74 4.61
1731 1744 4.671590 AGCTGCTGCATGCCACCA 62.672 61.111 16.68 8.48 42.74 4.17
1732 1745 3.458163 GCTGCTGCATGCCACCAT 61.458 61.111 16.68 0.00 42.00 3.55
1743 1756 2.593346 TGCCACCATGAACACAAAAC 57.407 45.000 0.00 0.00 0.00 2.43
1744 1757 1.827344 TGCCACCATGAACACAAAACA 59.173 42.857 0.00 0.00 0.00 2.83
1745 1758 2.433604 TGCCACCATGAACACAAAACAT 59.566 40.909 0.00 0.00 0.00 2.71
1746 1759 3.638627 TGCCACCATGAACACAAAACATA 59.361 39.130 0.00 0.00 0.00 2.29
1747 1760 4.282957 TGCCACCATGAACACAAAACATAT 59.717 37.500 0.00 0.00 0.00 1.78
1748 1761 5.221601 TGCCACCATGAACACAAAACATATT 60.222 36.000 0.00 0.00 0.00 1.28
1749 1762 5.348451 GCCACCATGAACACAAAACATATTC 59.652 40.000 0.00 0.00 0.00 1.75
1750 1763 6.690530 CCACCATGAACACAAAACATATTCT 58.309 36.000 0.00 0.00 0.00 2.40
1751 1764 7.153985 CCACCATGAACACAAAACATATTCTT 58.846 34.615 0.00 0.00 0.00 2.52
1752 1765 7.329226 CCACCATGAACACAAAACATATTCTTC 59.671 37.037 0.00 0.00 0.00 2.87
1753 1766 8.084073 CACCATGAACACAAAACATATTCTTCT 58.916 33.333 0.00 0.00 0.00 2.85
1754 1767 8.641541 ACCATGAACACAAAACATATTCTTCTT 58.358 29.630 0.00 0.00 0.00 2.52
1755 1768 9.480053 CCATGAACACAAAACATATTCTTCTTT 57.520 29.630 0.00 0.00 0.00 2.52
1792 1805 5.518848 AAAACAGTGAGAATGCAATCACA 57.481 34.783 23.76 13.73 46.63 3.58
1793 1806 5.717078 AAACAGTGAGAATGCAATCACAT 57.283 34.783 23.76 13.50 46.63 3.21
1794 1807 5.717078 AACAGTGAGAATGCAATCACATT 57.283 34.783 23.76 17.06 46.63 2.71
1795 1808 5.055642 ACAGTGAGAATGCAATCACATTG 57.944 39.130 23.76 21.28 46.63 2.82
1830 1843 7.737972 TTTTCGTTCTTTCATAGTGGATTGA 57.262 32.000 0.00 0.00 0.00 2.57
1831 1844 6.968131 TTCGTTCTTTCATAGTGGATTGAG 57.032 37.500 0.00 0.00 0.00 3.02
1832 1845 6.037786 TCGTTCTTTCATAGTGGATTGAGT 57.962 37.500 0.00 0.00 0.00 3.41
1833 1846 5.869344 TCGTTCTTTCATAGTGGATTGAGTG 59.131 40.000 0.00 0.00 0.00 3.51
1834 1847 5.639506 CGTTCTTTCATAGTGGATTGAGTGT 59.360 40.000 0.00 0.00 0.00 3.55
1835 1848 6.811665 CGTTCTTTCATAGTGGATTGAGTGTA 59.188 38.462 0.00 0.00 0.00 2.90
1836 1849 7.201444 CGTTCTTTCATAGTGGATTGAGTGTAC 60.201 40.741 0.00 0.00 0.00 2.90
1837 1850 7.482169 TCTTTCATAGTGGATTGAGTGTACT 57.518 36.000 0.00 0.00 0.00 2.73
1838 1851 7.323420 TCTTTCATAGTGGATTGAGTGTACTG 58.677 38.462 0.00 0.00 0.00 2.74
1839 1852 5.598416 TCATAGTGGATTGAGTGTACTGG 57.402 43.478 0.00 0.00 0.00 4.00
1840 1853 5.023452 TCATAGTGGATTGAGTGTACTGGT 58.977 41.667 0.00 0.00 0.00 4.00
1841 1854 6.192044 TCATAGTGGATTGAGTGTACTGGTA 58.808 40.000 0.00 0.00 0.00 3.25
1842 1855 6.839134 TCATAGTGGATTGAGTGTACTGGTAT 59.161 38.462 0.00 0.00 0.00 2.73
1843 1856 5.599999 AGTGGATTGAGTGTACTGGTATC 57.400 43.478 0.00 0.00 0.00 2.24
1844 1857 5.023452 AGTGGATTGAGTGTACTGGTATCA 58.977 41.667 0.00 0.00 0.00 2.15
1845 1858 5.483937 AGTGGATTGAGTGTACTGGTATCAA 59.516 40.000 0.00 0.00 34.64 2.57
1846 1859 6.156949 AGTGGATTGAGTGTACTGGTATCAAT 59.843 38.462 7.41 7.41 41.88 2.57
1847 1860 6.823689 GTGGATTGAGTGTACTGGTATCAATT 59.176 38.462 8.51 0.00 39.90 2.32
1848 1861 7.336931 GTGGATTGAGTGTACTGGTATCAATTT 59.663 37.037 8.51 0.00 39.90 1.82
1849 1862 7.552687 TGGATTGAGTGTACTGGTATCAATTTC 59.447 37.037 8.51 6.38 39.90 2.17
1850 1863 7.552687 GGATTGAGTGTACTGGTATCAATTTCA 59.447 37.037 8.51 0.00 39.90 2.69
1851 1864 7.905604 TTGAGTGTACTGGTATCAATTTCAG 57.094 36.000 0.00 0.00 0.00 3.02
1852 1865 6.406370 TGAGTGTACTGGTATCAATTTCAGG 58.594 40.000 0.00 0.00 0.00 3.86
1853 1866 5.186198 AGTGTACTGGTATCAATTTCAGGC 58.814 41.667 0.00 0.00 0.00 4.85
1854 1867 5.045578 AGTGTACTGGTATCAATTTCAGGCT 60.046 40.000 0.00 0.00 0.00 4.58
1855 1868 6.156256 AGTGTACTGGTATCAATTTCAGGCTA 59.844 38.462 0.00 0.00 0.00 3.93
1856 1869 6.821665 GTGTACTGGTATCAATTTCAGGCTAA 59.178 38.462 0.00 0.00 0.00 3.09
1857 1870 7.335924 GTGTACTGGTATCAATTTCAGGCTAAA 59.664 37.037 0.00 0.00 0.00 1.85
1858 1871 7.885922 TGTACTGGTATCAATTTCAGGCTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
1859 1872 7.775053 ACTGGTATCAATTTCAGGCTAAAAA 57.225 32.000 0.00 0.00 0.00 1.94
1880 1893 7.817418 AAAAAGTATGCTCCTACAAACTTCA 57.183 32.000 0.00 0.00 0.00 3.02
1881 1894 7.440523 AAAAGTATGCTCCTACAAACTTCAG 57.559 36.000 0.00 0.00 0.00 3.02
1882 1895 6.360370 AAGTATGCTCCTACAAACTTCAGA 57.640 37.500 0.00 0.00 0.00 3.27
1883 1896 6.360370 AGTATGCTCCTACAAACTTCAGAA 57.640 37.500 0.00 0.00 0.00 3.02
1884 1897 6.769512 AGTATGCTCCTACAAACTTCAGAAA 58.230 36.000 0.00 0.00 0.00 2.52
1885 1898 7.224297 AGTATGCTCCTACAAACTTCAGAAAA 58.776 34.615 0.00 0.00 0.00 2.29
1886 1899 6.566197 ATGCTCCTACAAACTTCAGAAAAG 57.434 37.500 0.00 0.00 0.00 2.27
1887 1900 5.437060 TGCTCCTACAAACTTCAGAAAAGT 58.563 37.500 0.00 0.00 0.00 2.66
1888 1901 5.885912 TGCTCCTACAAACTTCAGAAAAGTT 59.114 36.000 0.00 0.00 41.82 2.66
1889 1902 6.183360 TGCTCCTACAAACTTCAGAAAAGTTG 60.183 38.462 4.09 2.46 40.10 3.16
1890 1903 6.693315 TCCTACAAACTTCAGAAAAGTTGG 57.307 37.500 4.09 4.03 40.10 3.77
1891 1904 5.067283 TCCTACAAACTTCAGAAAAGTTGGC 59.933 40.000 4.09 0.00 40.10 4.52
1892 1905 5.067805 CCTACAAACTTCAGAAAAGTTGGCT 59.932 40.000 4.09 0.00 40.10 4.75
1893 1906 4.747810 ACAAACTTCAGAAAAGTTGGCTG 58.252 39.130 4.09 2.53 40.10 4.85
1894 1907 3.443099 AACTTCAGAAAAGTTGGCTGC 57.557 42.857 2.55 0.00 38.88 5.25
1895 1908 2.378038 ACTTCAGAAAAGTTGGCTGCA 58.622 42.857 0.50 0.00 0.00 4.41
1896 1909 2.099756 ACTTCAGAAAAGTTGGCTGCAC 59.900 45.455 0.50 0.00 0.00 4.57
1897 1910 1.761449 TCAGAAAAGTTGGCTGCACA 58.239 45.000 0.50 0.00 0.00 4.57
1898 1911 2.309613 TCAGAAAAGTTGGCTGCACAT 58.690 42.857 0.50 0.00 0.00 3.21
1899 1912 2.694628 TCAGAAAAGTTGGCTGCACATT 59.305 40.909 0.50 0.00 0.00 2.71
1900 1913 3.054878 CAGAAAAGTTGGCTGCACATTC 58.945 45.455 0.50 1.83 0.00 2.67
1901 1914 2.961062 AGAAAAGTTGGCTGCACATTCT 59.039 40.909 0.50 4.03 0.00 2.40
1902 1915 2.806608 AAAGTTGGCTGCACATTCTG 57.193 45.000 0.50 0.00 0.00 3.02
1903 1916 0.963962 AAGTTGGCTGCACATTCTGG 59.036 50.000 0.50 0.00 0.00 3.86
1904 1917 0.896940 AGTTGGCTGCACATTCTGGG 60.897 55.000 0.50 0.00 0.00 4.45
1905 1918 1.153524 TTGGCTGCACATTCTGGGT 59.846 52.632 0.50 0.00 0.00 4.51
1906 1919 0.469705 TTGGCTGCACATTCTGGGTT 60.470 50.000 0.50 0.00 0.00 4.11
1907 1920 1.180456 TGGCTGCACATTCTGGGTTG 61.180 55.000 0.50 0.00 0.00 3.77
1908 1921 0.895100 GGCTGCACATTCTGGGTTGA 60.895 55.000 0.50 0.00 0.00 3.18
1909 1922 0.524862 GCTGCACATTCTGGGTTGAG 59.475 55.000 0.00 0.00 0.00 3.02
1910 1923 1.901591 CTGCACATTCTGGGTTGAGT 58.098 50.000 0.00 0.00 0.00 3.41
1911 1924 2.233271 CTGCACATTCTGGGTTGAGTT 58.767 47.619 0.00 0.00 0.00 3.01
1912 1925 3.411446 CTGCACATTCTGGGTTGAGTTA 58.589 45.455 0.00 0.00 0.00 2.24
1913 1926 3.820467 CTGCACATTCTGGGTTGAGTTAA 59.180 43.478 0.00 0.00 0.00 2.01
1914 1927 4.406456 TGCACATTCTGGGTTGAGTTAAT 58.594 39.130 0.00 0.00 0.00 1.40
1915 1928 5.565509 TGCACATTCTGGGTTGAGTTAATA 58.434 37.500 0.00 0.00 0.00 0.98
1916 1929 5.414454 TGCACATTCTGGGTTGAGTTAATAC 59.586 40.000 0.00 0.00 0.00 1.89
1917 1930 5.163652 GCACATTCTGGGTTGAGTTAATACC 60.164 44.000 0.00 0.00 0.00 2.73
1918 1931 5.943416 CACATTCTGGGTTGAGTTAATACCA 59.057 40.000 0.00 0.00 33.51 3.25
1919 1932 5.944007 ACATTCTGGGTTGAGTTAATACCAC 59.056 40.000 0.00 0.00 33.51 4.16
1920 1933 4.563140 TCTGGGTTGAGTTAATACCACC 57.437 45.455 0.00 0.00 33.51 4.61
1921 1934 4.172807 TCTGGGTTGAGTTAATACCACCT 58.827 43.478 0.00 0.00 33.51 4.00
1922 1935 4.224370 TCTGGGTTGAGTTAATACCACCTC 59.776 45.833 0.00 0.00 33.51 3.85
1923 1936 4.172807 TGGGTTGAGTTAATACCACCTCT 58.827 43.478 0.00 0.00 33.51 3.69
1924 1937 5.343715 TGGGTTGAGTTAATACCACCTCTA 58.656 41.667 0.00 0.00 33.51 2.43
1925 1938 5.424252 TGGGTTGAGTTAATACCACCTCTAG 59.576 44.000 0.00 0.00 33.51 2.43
1926 1939 5.424573 GGGTTGAGTTAATACCACCTCTAGT 59.575 44.000 0.00 0.00 33.51 2.57
1927 1940 6.608808 GGGTTGAGTTAATACCACCTCTAGTA 59.391 42.308 0.00 0.00 33.51 1.82
1928 1941 7.124750 GGGTTGAGTTAATACCACCTCTAGTAA 59.875 40.741 0.00 0.00 33.51 2.24
1929 1942 8.534496 GGTTGAGTTAATACCACCTCTAGTAAA 58.466 37.037 0.00 0.00 32.12 2.01
1930 1943 9.363763 GTTGAGTTAATACCACCTCTAGTAAAC 57.636 37.037 0.00 0.00 0.00 2.01
1931 1944 8.890410 TGAGTTAATACCACCTCTAGTAAACT 57.110 34.615 0.00 0.00 0.00 2.66
1932 1945 9.317827 TGAGTTAATACCACCTCTAGTAAACTT 57.682 33.333 0.00 0.00 0.00 2.66
1933 1946 9.583765 GAGTTAATACCACCTCTAGTAAACTTG 57.416 37.037 0.00 0.00 0.00 3.16
1934 1947 9.097946 AGTTAATACCACCTCTAGTAAACTTGT 57.902 33.333 0.00 0.00 0.00 3.16
1935 1948 9.363763 GTTAATACCACCTCTAGTAAACTTGTC 57.636 37.037 0.00 0.00 0.00 3.18
1936 1949 4.886496 ACCACCTCTAGTAAACTTGTCC 57.114 45.455 0.00 0.00 0.00 4.02
1937 1950 4.490706 ACCACCTCTAGTAAACTTGTCCT 58.509 43.478 0.00 0.00 0.00 3.85
1938 1951 4.283722 ACCACCTCTAGTAAACTTGTCCTG 59.716 45.833 0.00 0.00 0.00 3.86
1939 1952 4.322801 CCACCTCTAGTAAACTTGTCCTGG 60.323 50.000 0.00 0.00 0.00 4.45
1940 1953 4.283722 CACCTCTAGTAAACTTGTCCTGGT 59.716 45.833 0.00 0.00 0.00 4.00
1941 1954 4.283722 ACCTCTAGTAAACTTGTCCTGGTG 59.716 45.833 0.00 0.00 0.00 4.17
1942 1955 4.322801 CCTCTAGTAAACTTGTCCTGGTGG 60.323 50.000 0.00 0.00 0.00 4.61
1943 1956 2.951229 AGTAAACTTGTCCTGGTGGG 57.049 50.000 0.00 0.00 0.00 4.61
1944 1957 2.414612 AGTAAACTTGTCCTGGTGGGA 58.585 47.619 0.00 0.00 42.77 4.37
1957 1970 4.105697 TCCTGGTGGGAACAAAGAACTAAT 59.894 41.667 0.00 0.00 46.06 1.73
1961 1974 7.279750 TGGTGGGAACAAAGAACTAATAAAC 57.720 36.000 0.00 0.00 46.06 2.01
1978 1991 8.110908 ACTAATAAACCCCATAAAAGTAGTGCA 58.889 33.333 0.00 0.00 0.00 4.57
2013 2026 6.745907 GCTAACGGAACATTTTAGTCCATTTC 59.254 38.462 0.00 0.00 0.00 2.17
2022 2035 8.575649 ACATTTTAGTCCATTTCCGTCTATTT 57.424 30.769 0.00 0.00 0.00 1.40
2026 2039 3.374058 AGTCCATTTCCGTCTATTTTGCG 59.626 43.478 0.00 0.00 0.00 4.85
2052 2065 3.181465 CCACCGTCTCCTGCTGTTATAAT 60.181 47.826 0.00 0.00 0.00 1.28
2144 2271 5.280945 CACCCAGACAAAATACACTTGTTG 58.719 41.667 0.00 0.00 37.14 3.33
2241 2368 3.187700 AGAGTTGTATTCCGCGCTAAAG 58.812 45.455 5.56 0.00 0.00 1.85
2300 3810 2.224042 TGCTTCGGTATATGAGCCACTG 60.224 50.000 0.00 0.00 0.00 3.66
2320 3830 1.272781 GCATCTCTTCAACGACCGAG 58.727 55.000 0.00 0.00 0.00 4.63
2356 3866 3.990092 CCAGCTAACGTGGCTATATTCA 58.010 45.455 14.49 0.00 38.03 2.57
2388 3898 1.545582 CATTGAGCAAACCCCGTCATT 59.454 47.619 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 325 1.172812 GCCCTGGAGCAAGTTTCGTT 61.173 55.000 0.00 0.00 0.00 3.85
447 454 7.979537 GGTAAGTCATGTTTTTGGAGAAGTTTT 59.020 33.333 0.00 0.00 0.00 2.43
465 473 3.075283 ACCAATTGACCCATGGTAAGTCA 59.925 43.478 15.84 15.84 45.37 3.41
735 744 1.734047 CGGTTCTGCAGAGTAGTGAGC 60.734 57.143 17.43 9.62 0.00 4.26
749 758 2.159382 CAACATTGGTTAGGCGGTTCT 58.841 47.619 0.00 0.00 34.87 3.01
795 804 3.072330 TGGTAACATCCTGCAACAGAGAA 59.928 43.478 0.00 0.00 46.17 2.87
871 880 1.745115 GCAATGAGTAGGCGCACCA 60.745 57.895 10.83 0.49 39.06 4.17
1037 1048 2.358125 CGCACCACGGACAATCCA 60.358 61.111 0.00 0.00 35.91 3.41
1186 1197 2.491693 CGGTAGGCCAAATGTTGATGTT 59.508 45.455 5.01 0.00 34.09 2.71
1231 1242 1.752198 CGTTCCTGGAGTCCCACAA 59.248 57.895 6.74 0.00 37.58 3.33
1296 1307 8.643752 CGAAGCGTAAAATCCAAAATAATGTTT 58.356 29.630 0.00 0.00 0.00 2.83
1321 1332 3.532542 GGTCCTTAAATCTGAAGACCCG 58.467 50.000 0.00 0.00 0.00 5.28
1325 1336 3.178865 ACGGGGTCCTTAAATCTGAAGA 58.821 45.455 0.00 0.00 0.00 2.87
1363 1375 1.344763 GAGGTATAGGCGCCAAGACAT 59.655 52.381 31.54 20.08 0.00 3.06
1484 1497 2.230508 GCACCATATCAGCAATCCATGG 59.769 50.000 4.97 4.97 41.60 3.66
1485 1498 2.230508 GGCACCATATCAGCAATCCATG 59.769 50.000 0.00 0.00 0.00 3.66
1486 1499 2.158430 TGGCACCATATCAGCAATCCAT 60.158 45.455 0.00 0.00 0.00 3.41
1487 1500 1.214923 TGGCACCATATCAGCAATCCA 59.785 47.619 0.00 0.00 0.00 3.41
1488 1501 1.985473 TGGCACCATATCAGCAATCC 58.015 50.000 0.00 0.00 0.00 3.01
1489 1502 3.057736 GTCATGGCACCATATCAGCAATC 60.058 47.826 0.89 0.00 34.91 2.67
1490 1503 2.889045 GTCATGGCACCATATCAGCAAT 59.111 45.455 0.89 0.00 34.91 3.56
1491 1504 2.300433 GTCATGGCACCATATCAGCAA 58.700 47.619 0.89 0.00 34.91 3.91
1492 1505 1.477377 GGTCATGGCACCATATCAGCA 60.477 52.381 0.89 0.00 36.32 4.41
1493 1506 1.242076 GGTCATGGCACCATATCAGC 58.758 55.000 0.89 0.00 36.32 4.26
1494 1507 2.643995 TGGTCATGGCACCATATCAG 57.356 50.000 0.89 0.00 41.84 2.90
1501 1514 1.203052 CACTTCAATGGTCATGGCACC 59.797 52.381 0.00 0.00 36.90 5.01
1502 1515 2.161855 TCACTTCAATGGTCATGGCAC 58.838 47.619 0.00 0.00 0.00 5.01
1503 1516 2.583024 TCACTTCAATGGTCATGGCA 57.417 45.000 0.00 0.00 0.00 4.92
1504 1517 3.018856 TCATCACTTCAATGGTCATGGC 58.981 45.455 0.00 0.00 0.00 4.40
1505 1518 4.142315 GGTTCATCACTTCAATGGTCATGG 60.142 45.833 0.00 0.00 0.00 3.66
1506 1519 4.460034 TGGTTCATCACTTCAATGGTCATG 59.540 41.667 0.00 0.00 0.00 3.07
1507 1520 4.665451 TGGTTCATCACTTCAATGGTCAT 58.335 39.130 0.00 0.00 0.00 3.06
1508 1521 4.097551 TGGTTCATCACTTCAATGGTCA 57.902 40.909 0.00 0.00 0.00 4.02
1509 1522 4.321230 GGTTGGTTCATCACTTCAATGGTC 60.321 45.833 0.00 0.00 0.00 4.02
1510 1523 3.573967 GGTTGGTTCATCACTTCAATGGT 59.426 43.478 0.00 0.00 0.00 3.55
1511 1524 3.573538 TGGTTGGTTCATCACTTCAATGG 59.426 43.478 0.00 0.00 0.00 3.16
1512 1525 4.852134 TGGTTGGTTCATCACTTCAATG 57.148 40.909 0.00 0.00 0.00 2.82
1513 1526 4.039124 GGTTGGTTGGTTCATCACTTCAAT 59.961 41.667 0.00 0.00 0.00 2.57
1514 1527 3.383185 GGTTGGTTGGTTCATCACTTCAA 59.617 43.478 0.00 0.00 0.00 2.69
1515 1528 2.955660 GGTTGGTTGGTTCATCACTTCA 59.044 45.455 0.00 0.00 0.00 3.02
1516 1529 2.955660 TGGTTGGTTGGTTCATCACTTC 59.044 45.455 0.00 0.00 0.00 3.01
1517 1530 3.025322 TGGTTGGTTGGTTCATCACTT 57.975 42.857 0.00 0.00 0.00 3.16
1518 1531 2.693074 GTTGGTTGGTTGGTTCATCACT 59.307 45.455 0.00 0.00 0.00 3.41
1519 1532 2.223947 GGTTGGTTGGTTGGTTCATCAC 60.224 50.000 0.00 0.00 0.00 3.06
1520 1533 2.035632 GGTTGGTTGGTTGGTTCATCA 58.964 47.619 0.00 0.00 0.00 3.07
1521 1534 2.035632 TGGTTGGTTGGTTGGTTCATC 58.964 47.619 0.00 0.00 0.00 2.92
1522 1535 2.038659 CTGGTTGGTTGGTTGGTTCAT 58.961 47.619 0.00 0.00 0.00 2.57
1523 1536 1.479709 CTGGTTGGTTGGTTGGTTCA 58.520 50.000 0.00 0.00 0.00 3.18
1524 1537 0.104120 GCTGGTTGGTTGGTTGGTTC 59.896 55.000 0.00 0.00 0.00 3.62
1525 1538 1.671901 CGCTGGTTGGTTGGTTGGTT 61.672 55.000 0.00 0.00 0.00 3.67
1526 1539 2.124693 CGCTGGTTGGTTGGTTGGT 61.125 57.895 0.00 0.00 0.00 3.67
1527 1540 2.727544 CGCTGGTTGGTTGGTTGG 59.272 61.111 0.00 0.00 0.00 3.77
1528 1541 1.826054 TCCGCTGGTTGGTTGGTTG 60.826 57.895 0.00 0.00 0.00 3.77
1529 1542 1.826487 GTCCGCTGGTTGGTTGGTT 60.826 57.895 0.00 0.00 0.00 3.67
1530 1543 2.203294 GTCCGCTGGTTGGTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
1531 1544 2.983592 GGTCCGCTGGTTGGTTGG 60.984 66.667 0.00 0.00 0.00 3.77
1532 1545 3.353836 CGGTCCGCTGGTTGGTTG 61.354 66.667 0.00 0.00 0.00 3.77
1533 1546 4.636435 CCGGTCCGCTGGTTGGTT 62.636 66.667 5.50 0.00 36.39 3.67
1543 1556 3.883744 AAACTCAGCAGCCGGTCCG 62.884 63.158 3.60 3.60 0.00 4.79
1544 1557 2.032681 AAACTCAGCAGCCGGTCC 59.967 61.111 1.90 0.00 0.00 4.46
1545 1558 0.246635 TAGAAACTCAGCAGCCGGTC 59.753 55.000 1.90 0.00 0.00 4.79
1546 1559 0.247736 CTAGAAACTCAGCAGCCGGT 59.752 55.000 1.90 0.00 0.00 5.28
1547 1560 1.086634 GCTAGAAACTCAGCAGCCGG 61.087 60.000 0.00 0.00 37.73 6.13
1548 1561 0.390340 TGCTAGAAACTCAGCAGCCG 60.390 55.000 0.00 0.00 42.68 5.52
1549 1562 3.540211 TGCTAGAAACTCAGCAGCC 57.460 52.632 0.00 0.00 42.68 4.85
1581 1594 0.038890 AAGAAGGGAAGGCAGGAAGC 59.961 55.000 0.00 0.00 44.65 3.86
1582 1595 2.593925 AAAGAAGGGAAGGCAGGAAG 57.406 50.000 0.00 0.00 0.00 3.46
1583 1596 2.986728 ACTAAAGAAGGGAAGGCAGGAA 59.013 45.455 0.00 0.00 0.00 3.36
1584 1597 2.632537 ACTAAAGAAGGGAAGGCAGGA 58.367 47.619 0.00 0.00 0.00 3.86
1585 1598 3.009584 AGAACTAAAGAAGGGAAGGCAGG 59.990 47.826 0.00 0.00 0.00 4.85
1586 1599 4.293662 AGAACTAAAGAAGGGAAGGCAG 57.706 45.455 0.00 0.00 0.00 4.85
1587 1600 4.724279 AAGAACTAAAGAAGGGAAGGCA 57.276 40.909 0.00 0.00 0.00 4.75
1588 1601 5.535030 TCAAAAGAACTAAAGAAGGGAAGGC 59.465 40.000 0.00 0.00 0.00 4.35
1589 1602 7.582667 TTCAAAAGAACTAAAGAAGGGAAGG 57.417 36.000 0.00 0.00 0.00 3.46
1590 1603 7.644157 CGTTTCAAAAGAACTAAAGAAGGGAAG 59.356 37.037 0.00 0.00 0.00 3.46
1591 1604 7.415877 CCGTTTCAAAAGAACTAAAGAAGGGAA 60.416 37.037 0.00 0.00 0.00 3.97
1592 1605 6.038936 CCGTTTCAAAAGAACTAAAGAAGGGA 59.961 38.462 0.00 0.00 0.00 4.20
1593 1606 6.038936 TCCGTTTCAAAAGAACTAAAGAAGGG 59.961 38.462 0.00 0.00 0.00 3.95
1594 1607 6.910972 GTCCGTTTCAAAAGAACTAAAGAAGG 59.089 38.462 0.00 0.00 0.00 3.46
1595 1608 6.627671 CGTCCGTTTCAAAAGAACTAAAGAAG 59.372 38.462 0.00 0.00 0.00 2.85
1596 1609 6.457257 CCGTCCGTTTCAAAAGAACTAAAGAA 60.457 38.462 0.00 0.00 0.00 2.52
1597 1610 5.006941 CCGTCCGTTTCAAAAGAACTAAAGA 59.993 40.000 0.00 0.00 0.00 2.52
1598 1611 5.006941 TCCGTCCGTTTCAAAAGAACTAAAG 59.993 40.000 0.00 0.00 0.00 1.85
1599 1612 4.874966 TCCGTCCGTTTCAAAAGAACTAAA 59.125 37.500 0.00 0.00 0.00 1.85
1600 1613 4.440880 TCCGTCCGTTTCAAAAGAACTAA 58.559 39.130 0.00 0.00 0.00 2.24
1601 1614 4.057406 TCCGTCCGTTTCAAAAGAACTA 57.943 40.909 0.00 0.00 0.00 2.24
1602 1615 2.908916 TCCGTCCGTTTCAAAAGAACT 58.091 42.857 0.00 0.00 0.00 3.01
1603 1616 3.891056 ATCCGTCCGTTTCAAAAGAAC 57.109 42.857 0.00 0.00 0.00 3.01
1604 1617 4.577283 AGAAATCCGTCCGTTTCAAAAGAA 59.423 37.500 5.83 0.00 36.92 2.52
1605 1618 4.131596 AGAAATCCGTCCGTTTCAAAAGA 58.868 39.130 5.83 0.00 36.92 2.52
1606 1619 4.483476 AGAAATCCGTCCGTTTCAAAAG 57.517 40.909 5.83 0.00 36.92 2.27
1607 1620 4.335874 TGAAGAAATCCGTCCGTTTCAAAA 59.664 37.500 5.83 0.00 36.92 2.44
1608 1621 3.878103 TGAAGAAATCCGTCCGTTTCAAA 59.122 39.130 5.83 0.00 36.92 2.69
1609 1622 3.468770 TGAAGAAATCCGTCCGTTTCAA 58.531 40.909 5.83 0.00 36.92 2.69
1610 1623 3.114668 TGAAGAAATCCGTCCGTTTCA 57.885 42.857 5.83 0.00 36.92 2.69
1611 1624 3.933332 AGATGAAGAAATCCGTCCGTTTC 59.067 43.478 0.00 0.00 35.18 2.78
1612 1625 3.684788 CAGATGAAGAAATCCGTCCGTTT 59.315 43.478 0.00 0.00 0.00 3.60
1613 1626 3.262420 CAGATGAAGAAATCCGTCCGTT 58.738 45.455 0.00 0.00 0.00 4.44
1614 1627 2.418746 CCAGATGAAGAAATCCGTCCGT 60.419 50.000 0.00 0.00 0.00 4.69
1615 1628 2.205074 CCAGATGAAGAAATCCGTCCG 58.795 52.381 0.00 0.00 0.00 4.79
1616 1629 1.943340 GCCAGATGAAGAAATCCGTCC 59.057 52.381 0.00 0.00 0.00 4.79
1617 1630 1.943340 GGCCAGATGAAGAAATCCGTC 59.057 52.381 0.00 0.00 0.00 4.79
1618 1631 1.408822 GGGCCAGATGAAGAAATCCGT 60.409 52.381 4.39 0.00 0.00 4.69
1619 1632 1.312815 GGGCCAGATGAAGAAATCCG 58.687 55.000 4.39 0.00 0.00 4.18
1620 1633 1.063717 TGGGGCCAGATGAAGAAATCC 60.064 52.381 4.39 0.00 0.00 3.01
1621 1634 2.442236 TGGGGCCAGATGAAGAAATC 57.558 50.000 4.39 0.00 0.00 2.17
1622 1635 3.036091 CAATGGGGCCAGATGAAGAAAT 58.964 45.455 4.39 0.00 0.00 2.17
1623 1636 2.225343 ACAATGGGGCCAGATGAAGAAA 60.225 45.455 4.39 0.00 0.00 2.52
1624 1637 1.358787 ACAATGGGGCCAGATGAAGAA 59.641 47.619 4.39 0.00 0.00 2.52
1625 1638 1.002069 ACAATGGGGCCAGATGAAGA 58.998 50.000 4.39 0.00 0.00 2.87
1626 1639 1.396653 GACAATGGGGCCAGATGAAG 58.603 55.000 4.39 0.00 0.00 3.02
1627 1640 0.033208 GGACAATGGGGCCAGATGAA 60.033 55.000 4.39 0.00 0.00 2.57
1628 1641 0.920763 AGGACAATGGGGCCAGATGA 60.921 55.000 4.39 0.00 0.00 2.92
1629 1642 0.466922 GAGGACAATGGGGCCAGATG 60.467 60.000 4.39 2.65 0.00 2.90
1630 1643 0.625683 AGAGGACAATGGGGCCAGAT 60.626 55.000 4.39 0.00 0.00 2.90
1631 1644 0.846427 AAGAGGACAATGGGGCCAGA 60.846 55.000 4.39 0.00 0.00 3.86
1632 1645 0.682209 CAAGAGGACAATGGGGCCAG 60.682 60.000 4.39 0.00 0.00 4.85
1633 1646 1.383799 CAAGAGGACAATGGGGCCA 59.616 57.895 4.39 0.00 0.00 5.36
1634 1647 0.967380 CACAAGAGGACAATGGGGCC 60.967 60.000 0.00 0.00 0.00 5.80
1635 1648 0.251341 ACACAAGAGGACAATGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
1636 1649 1.073763 TCACACAAGAGGACAATGGGG 59.926 52.381 0.00 0.00 0.00 4.96
1637 1650 2.566833 TCACACAAGAGGACAATGGG 57.433 50.000 0.00 0.00 0.00 4.00
1638 1651 3.441572 GGAATCACACAAGAGGACAATGG 59.558 47.826 0.00 0.00 0.00 3.16
1639 1652 4.330250 AGGAATCACACAAGAGGACAATG 58.670 43.478 0.00 0.00 0.00 2.82
1640 1653 4.647564 AGGAATCACACAAGAGGACAAT 57.352 40.909 0.00 0.00 0.00 2.71
1641 1654 4.136796 CAAGGAATCACACAAGAGGACAA 58.863 43.478 0.00 0.00 0.00 3.18
1642 1655 3.496692 CCAAGGAATCACACAAGAGGACA 60.497 47.826 0.00 0.00 0.00 4.02
1643 1656 3.077359 CCAAGGAATCACACAAGAGGAC 58.923 50.000 0.00 0.00 0.00 3.85
1644 1657 2.553028 GCCAAGGAATCACACAAGAGGA 60.553 50.000 0.00 0.00 0.00 3.71
1645 1658 1.815003 GCCAAGGAATCACACAAGAGG 59.185 52.381 0.00 0.00 0.00 3.69
1646 1659 2.507484 TGCCAAGGAATCACACAAGAG 58.493 47.619 0.00 0.00 0.00 2.85
1647 1660 2.622942 GTTGCCAAGGAATCACACAAGA 59.377 45.455 0.00 0.00 0.00 3.02
1648 1661 2.624838 AGTTGCCAAGGAATCACACAAG 59.375 45.455 0.00 0.00 0.00 3.16
1649 1662 2.622942 GAGTTGCCAAGGAATCACACAA 59.377 45.455 0.00 0.00 0.00 3.33
1650 1663 2.229792 GAGTTGCCAAGGAATCACACA 58.770 47.619 0.00 0.00 0.00 3.72
1651 1664 1.197721 CGAGTTGCCAAGGAATCACAC 59.802 52.381 0.00 0.00 0.00 3.82
1652 1665 1.522668 CGAGTTGCCAAGGAATCACA 58.477 50.000 0.00 0.00 0.00 3.58
1653 1666 0.804989 CCGAGTTGCCAAGGAATCAC 59.195 55.000 0.00 0.00 0.00 3.06
1654 1667 0.960364 GCCGAGTTGCCAAGGAATCA 60.960 55.000 0.00 0.00 0.00 2.57
1655 1668 1.803289 GCCGAGTTGCCAAGGAATC 59.197 57.895 0.00 0.00 0.00 2.52
1656 1669 4.002797 GCCGAGTTGCCAAGGAAT 57.997 55.556 0.00 0.00 0.00 3.01
1665 1678 2.608970 ATTCCATCCGGGCCGAGTTG 62.609 60.000 30.79 20.33 36.21 3.16
1666 1679 1.921869 AATTCCATCCGGGCCGAGTT 61.922 55.000 30.79 7.04 36.21 3.01
1667 1680 1.921869 AAATTCCATCCGGGCCGAGT 61.922 55.000 30.79 12.89 36.21 4.18
1668 1681 0.751643 AAAATTCCATCCGGGCCGAG 60.752 55.000 30.79 17.99 36.21 4.63
1669 1682 1.034838 CAAAATTCCATCCGGGCCGA 61.035 55.000 30.79 14.42 36.21 5.54
1670 1683 1.437160 CAAAATTCCATCCGGGCCG 59.563 57.895 21.46 21.46 36.21 6.13
1671 1684 1.685355 CCCAAAATTCCATCCGGGCC 61.685 60.000 0.00 0.00 36.21 5.80
1672 1685 1.822615 CCCAAAATTCCATCCGGGC 59.177 57.895 0.00 0.00 36.21 6.13
1673 1686 1.685355 GGCCCAAAATTCCATCCGGG 61.685 60.000 0.00 0.00 36.71 5.73
1674 1687 1.822615 GGCCCAAAATTCCATCCGG 59.177 57.895 0.00 0.00 0.00 5.14
1675 1688 1.034838 TCGGCCCAAAATTCCATCCG 61.035 55.000 0.00 0.00 37.00 4.18
1676 1689 0.459899 GTCGGCCCAAAATTCCATCC 59.540 55.000 0.00 0.00 0.00 3.51
1677 1690 1.405463 GAGTCGGCCCAAAATTCCATC 59.595 52.381 0.00 0.00 0.00 3.51
1678 1691 1.272425 TGAGTCGGCCCAAAATTCCAT 60.272 47.619 0.00 0.00 0.00 3.41
1679 1692 0.111446 TGAGTCGGCCCAAAATTCCA 59.889 50.000 0.00 0.00 0.00 3.53
1680 1693 1.067846 GTTGAGTCGGCCCAAAATTCC 60.068 52.381 0.00 0.00 0.00 3.01
1681 1694 1.886542 AGTTGAGTCGGCCCAAAATTC 59.113 47.619 0.00 0.00 0.00 2.17
1682 1695 1.886542 GAGTTGAGTCGGCCCAAAATT 59.113 47.619 0.00 0.00 0.00 1.82
1683 1696 1.534729 GAGTTGAGTCGGCCCAAAAT 58.465 50.000 0.00 0.00 0.00 1.82
1684 1697 0.536460 GGAGTTGAGTCGGCCCAAAA 60.536 55.000 0.00 0.00 0.00 2.44
1685 1698 1.072505 GGAGTTGAGTCGGCCCAAA 59.927 57.895 0.00 0.00 0.00 3.28
1686 1699 2.747686 GGAGTTGAGTCGGCCCAA 59.252 61.111 0.00 0.00 0.00 4.12
1687 1700 3.319198 GGGAGTTGAGTCGGCCCA 61.319 66.667 0.00 0.00 38.68 5.36
1688 1701 2.890766 TTGGGAGTTGAGTCGGCCC 61.891 63.158 0.00 0.00 39.29 5.80
1689 1702 1.671379 GTTGGGAGTTGAGTCGGCC 60.671 63.158 0.00 0.00 0.00 6.13
1690 1703 0.951040 CTGTTGGGAGTTGAGTCGGC 60.951 60.000 0.00 0.00 0.00 5.54
1691 1704 0.951040 GCTGTTGGGAGTTGAGTCGG 60.951 60.000 0.00 0.00 0.00 4.79
1692 1705 0.034059 AGCTGTTGGGAGTTGAGTCG 59.966 55.000 0.00 0.00 0.00 4.18
1693 1706 2.037251 TGTAGCTGTTGGGAGTTGAGTC 59.963 50.000 0.00 0.00 0.00 3.36
1694 1707 2.037772 CTGTAGCTGTTGGGAGTTGAGT 59.962 50.000 0.00 0.00 0.00 3.41
1695 1708 2.693069 CTGTAGCTGTTGGGAGTTGAG 58.307 52.381 0.00 0.00 0.00 3.02
1696 1709 1.270839 GCTGTAGCTGTTGGGAGTTGA 60.271 52.381 0.00 0.00 38.21 3.18
1697 1710 1.160137 GCTGTAGCTGTTGGGAGTTG 58.840 55.000 0.00 0.00 38.21 3.16
1698 1711 3.633361 GCTGTAGCTGTTGGGAGTT 57.367 52.632 0.00 0.00 38.21 3.01
1709 1722 2.408022 GCATGCAGCAGCTGTAGC 59.592 61.111 23.60 19.53 44.79 3.58
1718 1731 1.153706 GTTCATGGTGGCATGCAGC 60.154 57.895 21.36 15.21 44.65 5.25
1719 1732 0.108992 GTGTTCATGGTGGCATGCAG 60.109 55.000 21.36 1.65 32.87 4.41
1720 1733 0.826672 TGTGTTCATGGTGGCATGCA 60.827 50.000 21.36 2.54 32.87 3.96
1721 1734 0.317799 TTGTGTTCATGGTGGCATGC 59.682 50.000 9.90 9.90 32.87 4.06
1722 1735 2.801679 GTTTTGTGTTCATGGTGGCATG 59.198 45.455 0.00 0.00 0.00 4.06
1723 1736 2.433604 TGTTTTGTGTTCATGGTGGCAT 59.566 40.909 0.00 0.00 0.00 4.40
1724 1737 1.827344 TGTTTTGTGTTCATGGTGGCA 59.173 42.857 0.00 0.00 0.00 4.92
1725 1738 2.593346 TGTTTTGTGTTCATGGTGGC 57.407 45.000 0.00 0.00 0.00 5.01
1726 1739 6.690530 AGAATATGTTTTGTGTTCATGGTGG 58.309 36.000 0.00 0.00 0.00 4.61
1727 1740 8.084073 AGAAGAATATGTTTTGTGTTCATGGTG 58.916 33.333 0.00 0.00 0.00 4.17
1728 1741 8.181904 AGAAGAATATGTTTTGTGTTCATGGT 57.818 30.769 0.00 0.00 0.00 3.55
1729 1742 9.480053 AAAGAAGAATATGTTTTGTGTTCATGG 57.520 29.630 0.00 0.00 0.00 3.66
1769 1782 5.904941 TGTGATTGCATTCTCACTGTTTTT 58.095 33.333 19.28 0.00 41.83 1.94
1770 1783 5.518848 TGTGATTGCATTCTCACTGTTTT 57.481 34.783 19.28 0.00 41.83 2.43
1771 1784 5.717078 ATGTGATTGCATTCTCACTGTTT 57.283 34.783 19.28 3.25 41.83 2.83
1772 1785 5.466819 CAATGTGATTGCATTCTCACTGTT 58.533 37.500 19.28 13.55 41.83 3.16
1773 1786 5.055642 CAATGTGATTGCATTCTCACTGT 57.944 39.130 19.28 9.88 41.83 3.55
1805 1818 8.160521 TCAATCCACTATGAAAGAACGAAAAA 57.839 30.769 0.00 0.00 0.00 1.94
1806 1819 7.444183 ACTCAATCCACTATGAAAGAACGAAAA 59.556 33.333 0.00 0.00 0.00 2.29
1807 1820 6.934645 ACTCAATCCACTATGAAAGAACGAAA 59.065 34.615 0.00 0.00 0.00 3.46
1808 1821 6.368791 CACTCAATCCACTATGAAAGAACGAA 59.631 38.462 0.00 0.00 0.00 3.85
1809 1822 5.869344 CACTCAATCCACTATGAAAGAACGA 59.131 40.000 0.00 0.00 0.00 3.85
1810 1823 5.639506 ACACTCAATCCACTATGAAAGAACG 59.360 40.000 0.00 0.00 0.00 3.95
1811 1824 7.819900 AGTACACTCAATCCACTATGAAAGAAC 59.180 37.037 0.00 0.00 0.00 3.01
1812 1825 7.819415 CAGTACACTCAATCCACTATGAAAGAA 59.181 37.037 0.00 0.00 0.00 2.52
1813 1826 7.323420 CAGTACACTCAATCCACTATGAAAGA 58.677 38.462 0.00 0.00 0.00 2.52
1814 1827 6.536582 CCAGTACACTCAATCCACTATGAAAG 59.463 42.308 0.00 0.00 0.00 2.62
1815 1828 6.013725 ACCAGTACACTCAATCCACTATGAAA 60.014 38.462 0.00 0.00 0.00 2.69
1816 1829 5.483937 ACCAGTACACTCAATCCACTATGAA 59.516 40.000 0.00 0.00 0.00 2.57
1817 1830 5.023452 ACCAGTACACTCAATCCACTATGA 58.977 41.667 0.00 0.00 0.00 2.15
1818 1831 5.344743 ACCAGTACACTCAATCCACTATG 57.655 43.478 0.00 0.00 0.00 2.23
1819 1832 6.839134 TGATACCAGTACACTCAATCCACTAT 59.161 38.462 0.00 0.00 0.00 2.12
1820 1833 6.192044 TGATACCAGTACACTCAATCCACTA 58.808 40.000 0.00 0.00 0.00 2.74
1821 1834 5.023452 TGATACCAGTACACTCAATCCACT 58.977 41.667 0.00 0.00 0.00 4.00
1822 1835 5.339008 TGATACCAGTACACTCAATCCAC 57.661 43.478 0.00 0.00 0.00 4.02
1823 1836 6.560003 ATTGATACCAGTACACTCAATCCA 57.440 37.500 0.00 0.00 32.57 3.41
1824 1837 7.552687 TGAAATTGATACCAGTACACTCAATCC 59.447 37.037 0.00 3.60 35.96 3.01
1825 1838 8.492673 TGAAATTGATACCAGTACACTCAATC 57.507 34.615 0.00 0.00 35.96 2.67
1826 1839 7.554118 CCTGAAATTGATACCAGTACACTCAAT 59.446 37.037 0.00 0.00 37.98 2.57
1827 1840 6.878923 CCTGAAATTGATACCAGTACACTCAA 59.121 38.462 0.00 0.00 0.00 3.02
1828 1841 6.406370 CCTGAAATTGATACCAGTACACTCA 58.594 40.000 0.00 0.00 0.00 3.41
1829 1842 5.294552 GCCTGAAATTGATACCAGTACACTC 59.705 44.000 0.00 0.00 0.00 3.51
1830 1843 5.045578 AGCCTGAAATTGATACCAGTACACT 60.046 40.000 0.00 0.00 0.00 3.55
1831 1844 5.186198 AGCCTGAAATTGATACCAGTACAC 58.814 41.667 0.00 0.00 0.00 2.90
1832 1845 5.435686 AGCCTGAAATTGATACCAGTACA 57.564 39.130 0.00 0.00 0.00 2.90
1833 1846 7.859325 TTTAGCCTGAAATTGATACCAGTAC 57.141 36.000 0.00 0.00 0.00 2.73
1834 1847 8.871629 TTTTTAGCCTGAAATTGATACCAGTA 57.128 30.769 0.00 0.00 0.00 2.74
1835 1848 7.775053 TTTTTAGCCTGAAATTGATACCAGT 57.225 32.000 0.00 0.00 0.00 4.00
1856 1869 7.719633 TCTGAAGTTTGTAGGAGCATACTTTTT 59.280 33.333 0.00 0.00 39.50 1.94
1857 1870 7.224297 TCTGAAGTTTGTAGGAGCATACTTTT 58.776 34.615 0.00 0.00 39.50 2.27
1858 1871 6.769512 TCTGAAGTTTGTAGGAGCATACTTT 58.230 36.000 0.00 0.00 39.50 2.66
1859 1872 6.360370 TCTGAAGTTTGTAGGAGCATACTT 57.640 37.500 0.00 0.00 41.14 2.24
1860 1873 6.360370 TTCTGAAGTTTGTAGGAGCATACT 57.640 37.500 0.00 0.00 33.28 2.12
1861 1874 7.173390 ACTTTTCTGAAGTTTGTAGGAGCATAC 59.827 37.037 0.00 0.00 0.00 2.39
1862 1875 7.224297 ACTTTTCTGAAGTTTGTAGGAGCATA 58.776 34.615 0.00 0.00 0.00 3.14
1863 1876 6.064717 ACTTTTCTGAAGTTTGTAGGAGCAT 58.935 36.000 0.00 0.00 0.00 3.79
1864 1877 5.437060 ACTTTTCTGAAGTTTGTAGGAGCA 58.563 37.500 0.00 0.00 0.00 4.26
1865 1878 6.202226 CAACTTTTCTGAAGTTTGTAGGAGC 58.798 40.000 1.66 0.00 38.32 4.70
1866 1879 6.729187 CCAACTTTTCTGAAGTTTGTAGGAG 58.271 40.000 1.66 0.00 38.32 3.69
1867 1880 5.067283 GCCAACTTTTCTGAAGTTTGTAGGA 59.933 40.000 1.66 0.00 38.32 2.94
1868 1881 5.067805 AGCCAACTTTTCTGAAGTTTGTAGG 59.932 40.000 1.66 2.40 38.32 3.18
1869 1882 5.973565 CAGCCAACTTTTCTGAAGTTTGTAG 59.026 40.000 1.66 0.00 38.32 2.74
1870 1883 5.678616 GCAGCCAACTTTTCTGAAGTTTGTA 60.679 40.000 1.66 0.00 38.32 2.41
1871 1884 4.747810 CAGCCAACTTTTCTGAAGTTTGT 58.252 39.130 1.66 0.00 38.32 2.83
1872 1885 3.553105 GCAGCCAACTTTTCTGAAGTTTG 59.447 43.478 1.66 0.77 38.32 2.93
1873 1886 3.195396 TGCAGCCAACTTTTCTGAAGTTT 59.805 39.130 1.66 0.00 38.32 2.66
1874 1887 2.760092 TGCAGCCAACTTTTCTGAAGTT 59.240 40.909 0.00 0.00 40.80 2.66
1875 1888 2.099756 GTGCAGCCAACTTTTCTGAAGT 59.900 45.455 0.00 0.00 0.00 3.01
1876 1889 2.099592 TGTGCAGCCAACTTTTCTGAAG 59.900 45.455 0.00 0.00 0.00 3.02
1877 1890 2.098614 TGTGCAGCCAACTTTTCTGAA 58.901 42.857 0.00 0.00 0.00 3.02
1878 1891 1.761449 TGTGCAGCCAACTTTTCTGA 58.239 45.000 0.00 0.00 0.00 3.27
1879 1892 2.806608 ATGTGCAGCCAACTTTTCTG 57.193 45.000 0.00 0.00 0.00 3.02
1880 1893 2.961062 AGAATGTGCAGCCAACTTTTCT 59.039 40.909 0.00 0.00 0.00 2.52
1881 1894 3.054878 CAGAATGTGCAGCCAACTTTTC 58.945 45.455 0.00 0.00 0.00 2.29
1882 1895 2.224113 CCAGAATGTGCAGCCAACTTTT 60.224 45.455 0.00 0.00 0.00 2.27
1883 1896 1.342174 CCAGAATGTGCAGCCAACTTT 59.658 47.619 0.00 0.00 0.00 2.66
1884 1897 0.963962 CCAGAATGTGCAGCCAACTT 59.036 50.000 0.00 0.00 0.00 2.66
1885 1898 0.896940 CCCAGAATGTGCAGCCAACT 60.897 55.000 0.00 0.00 0.00 3.16
1886 1899 1.181098 ACCCAGAATGTGCAGCCAAC 61.181 55.000 0.00 0.00 0.00 3.77
1887 1900 0.469705 AACCCAGAATGTGCAGCCAA 60.470 50.000 0.00 0.00 0.00 4.52
1888 1901 1.153524 AACCCAGAATGTGCAGCCA 59.846 52.632 0.00 0.00 0.00 4.75
1889 1902 0.895100 TCAACCCAGAATGTGCAGCC 60.895 55.000 0.00 0.00 0.00 4.85
1890 1903 0.524862 CTCAACCCAGAATGTGCAGC 59.475 55.000 0.00 0.00 0.00 5.25
1891 1904 1.901591 ACTCAACCCAGAATGTGCAG 58.098 50.000 0.00 0.00 0.00 4.41
1892 1905 2.363306 AACTCAACCCAGAATGTGCA 57.637 45.000 0.00 0.00 0.00 4.57
1893 1906 5.163652 GGTATTAACTCAACCCAGAATGTGC 60.164 44.000 0.00 0.00 0.00 4.57
1894 1907 5.943416 TGGTATTAACTCAACCCAGAATGTG 59.057 40.000 0.00 0.00 31.97 3.21
1895 1908 5.944007 GTGGTATTAACTCAACCCAGAATGT 59.056 40.000 0.00 0.00 31.97 2.71
1896 1909 5.357032 GGTGGTATTAACTCAACCCAGAATG 59.643 44.000 0.00 0.00 31.97 2.67
1897 1910 5.253096 AGGTGGTATTAACTCAACCCAGAAT 59.747 40.000 2.68 0.00 31.97 2.40
1898 1911 4.600111 AGGTGGTATTAACTCAACCCAGAA 59.400 41.667 2.68 0.00 31.97 3.02
1899 1912 4.172807 AGGTGGTATTAACTCAACCCAGA 58.827 43.478 2.68 0.00 31.97 3.86
1900 1913 4.225267 AGAGGTGGTATTAACTCAACCCAG 59.775 45.833 0.00 0.00 31.97 4.45
1901 1914 4.172807 AGAGGTGGTATTAACTCAACCCA 58.827 43.478 0.00 0.00 31.97 4.51
1902 1915 4.838904 AGAGGTGGTATTAACTCAACCC 57.161 45.455 0.00 0.00 31.97 4.11
1903 1916 6.541934 ACTAGAGGTGGTATTAACTCAACC 57.458 41.667 0.00 0.00 32.52 3.77
1904 1917 9.363763 GTTTACTAGAGGTGGTATTAACTCAAC 57.636 37.037 0.00 0.00 32.52 3.18
1905 1918 9.317827 AGTTTACTAGAGGTGGTATTAACTCAA 57.682 33.333 0.00 0.00 32.52 3.02
1906 1919 8.890410 AGTTTACTAGAGGTGGTATTAACTCA 57.110 34.615 0.00 0.00 32.52 3.41
1907 1920 9.583765 CAAGTTTACTAGAGGTGGTATTAACTC 57.416 37.037 0.00 0.00 26.80 3.01
1908 1921 9.097946 ACAAGTTTACTAGAGGTGGTATTAACT 57.902 33.333 0.00 0.00 27.52 2.24
1909 1922 9.363763 GACAAGTTTACTAGAGGTGGTATTAAC 57.636 37.037 0.00 0.00 0.00 2.01
1910 1923 8.534496 GGACAAGTTTACTAGAGGTGGTATTAA 58.466 37.037 0.00 0.00 0.00 1.40
1911 1924 7.897565 AGGACAAGTTTACTAGAGGTGGTATTA 59.102 37.037 0.00 0.00 0.00 0.98
1912 1925 6.729569 AGGACAAGTTTACTAGAGGTGGTATT 59.270 38.462 0.00 0.00 0.00 1.89
1913 1926 6.154706 CAGGACAAGTTTACTAGAGGTGGTAT 59.845 42.308 0.00 0.00 0.00 2.73
1914 1927 5.479375 CAGGACAAGTTTACTAGAGGTGGTA 59.521 44.000 0.00 0.00 0.00 3.25
1915 1928 4.283722 CAGGACAAGTTTACTAGAGGTGGT 59.716 45.833 0.00 0.00 0.00 4.16
1916 1929 4.322801 CCAGGACAAGTTTACTAGAGGTGG 60.323 50.000 0.00 0.00 0.00 4.61
1917 1930 4.283722 ACCAGGACAAGTTTACTAGAGGTG 59.716 45.833 0.00 0.00 0.00 4.00
1918 1931 4.283722 CACCAGGACAAGTTTACTAGAGGT 59.716 45.833 0.00 0.00 0.00 3.85
1919 1932 4.322801 CCACCAGGACAAGTTTACTAGAGG 60.323 50.000 0.00 0.00 36.89 3.69
1920 1933 4.322801 CCCACCAGGACAAGTTTACTAGAG 60.323 50.000 0.00 0.00 38.24 2.43
1921 1934 3.581332 CCCACCAGGACAAGTTTACTAGA 59.419 47.826 0.00 0.00 38.24 2.43
1922 1935 3.581332 TCCCACCAGGACAAGTTTACTAG 59.419 47.826 0.00 0.00 40.93 2.57
1923 1936 3.589641 TCCCACCAGGACAAGTTTACTA 58.410 45.455 0.00 0.00 40.93 1.82
1924 1937 2.414612 TCCCACCAGGACAAGTTTACT 58.585 47.619 0.00 0.00 40.93 2.24
1925 1938 2.943036 TCCCACCAGGACAAGTTTAC 57.057 50.000 0.00 0.00 40.93 2.01
1934 1947 1.850345 AGTTCTTTGTTCCCACCAGGA 59.150 47.619 0.00 0.00 45.68 3.86
1935 1948 2.364972 AGTTCTTTGTTCCCACCAGG 57.635 50.000 0.00 0.00 0.00 4.45
1936 1949 7.368059 GTTTATTAGTTCTTTGTTCCCACCAG 58.632 38.462 0.00 0.00 0.00 4.00
1937 1950 6.265876 GGTTTATTAGTTCTTTGTTCCCACCA 59.734 38.462 0.00 0.00 0.00 4.17
1938 1951 6.294899 GGGTTTATTAGTTCTTTGTTCCCACC 60.295 42.308 0.00 0.00 0.00 4.61
1939 1952 6.294899 GGGGTTTATTAGTTCTTTGTTCCCAC 60.295 42.308 0.00 0.00 32.52 4.61
1940 1953 5.776208 GGGGTTTATTAGTTCTTTGTTCCCA 59.224 40.000 0.00 0.00 32.52 4.37
1941 1954 5.776208 TGGGGTTTATTAGTTCTTTGTTCCC 59.224 40.000 0.00 0.00 0.00 3.97
1942 1955 6.904463 TGGGGTTTATTAGTTCTTTGTTCC 57.096 37.500 0.00 0.00 0.00 3.62
1957 1970 5.632118 TGTGCACTACTTTTATGGGGTTTA 58.368 37.500 19.41 0.00 0.00 2.01
1961 1974 4.522789 AGTTTGTGCACTACTTTTATGGGG 59.477 41.667 19.41 0.00 0.00 4.96
1976 1989 3.073144 TCCGTTAGCAAAAGTTTGTGC 57.927 42.857 12.18 12.18 40.24 4.57
1978 1991 4.705337 TGTTCCGTTAGCAAAAGTTTGT 57.295 36.364 5.71 0.00 40.24 2.83
2013 2026 0.391927 TGGACCCGCAAAATAGACGG 60.392 55.000 0.00 0.00 46.50 4.79
2026 2039 4.083862 GCAGGAGACGGTGGACCC 62.084 72.222 0.00 0.00 0.00 4.46
2052 2065 1.593209 GGTTCCACGTCAGCGAACA 60.593 57.895 13.32 0.00 42.00 3.18
2078 2091 2.032290 TCACGTAGACGACACTGACAAG 60.032 50.000 9.41 0.00 43.02 3.16
2144 2271 6.436843 AATGGTTGCAGCTACAATTAGTAC 57.563 37.500 7.74 0.00 0.00 2.73
2153 2280 7.072030 CGAAAGAATATAATGGTTGCAGCTAC 58.928 38.462 0.00 0.00 0.00 3.58
2219 2346 2.953466 TAGCGCGGAATACAACTCTT 57.047 45.000 8.83 0.00 0.00 2.85
2241 2368 5.812642 ACTCAAATGGATCACTGAACGTATC 59.187 40.000 0.00 0.00 0.00 2.24
2300 3810 0.108804 TCGGTCGTTGAAGAGATGCC 60.109 55.000 0.00 0.00 0.00 4.40
2320 3830 0.817654 GCTGGCCCAGTTATTTGGTC 59.182 55.000 13.35 0.00 36.45 4.02
2356 3866 0.245539 GCTCAATGTTGCCAGCACAT 59.754 50.000 0.00 0.00 30.80 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.