Multiple sequence alignment - TraesCS1B01G076200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G076200 chr1B 100.000 3608 0 0 1 3608 59040159 59043766 0.000000e+00 6663.0
1 TraesCS1B01G076200 chr1B 97.070 819 22 2 2414 3230 626237639 626236821 0.000000e+00 1378.0
2 TraesCS1B01G076200 chr3B 98.432 2424 37 1 1 2424 784063672 784061250 0.000000e+00 4265.0
3 TraesCS1B01G076200 chr3B 96.581 819 27 1 2414 3231 784061162 784060344 0.000000e+00 1356.0
4 TraesCS1B01G076200 chr3B 93.115 305 21 0 3282 3586 773877199 773876895 7.110000e-122 448.0
5 TraesCS1B01G076200 chr3B 93.137 306 18 3 3284 3587 260865130 260864826 2.560000e-121 446.0
6 TraesCS1B01G076200 chr7A 98.268 2425 39 3 1 2424 7421833 7424255 0.000000e+00 4242.0
7 TraesCS1B01G076200 chr7A 97.912 2251 45 2 1 2251 46729832 46727584 0.000000e+00 3895.0
8 TraesCS1B01G076200 chr7A 97.845 1346 29 0 1 1346 194167193 194168538 0.000000e+00 2326.0
9 TraesCS1B01G076200 chr7A 97.689 822 18 1 2411 3231 7424340 7425161 0.000000e+00 1411.0
10 TraesCS1B01G076200 chr7A 84.061 527 63 12 2411 2930 194171227 194171739 4.190000e-134 488.0
11 TraesCS1B01G076200 chr7A 87.629 97 10 1 2328 2422 680918614 680918518 1.060000e-20 111.0
12 TraesCS1B01G076200 chr4A 98.268 2425 39 3 1 2424 626535098 626532676 0.000000e+00 4242.0
13 TraesCS1B01G076200 chr4A 96.944 818 24 1 2414 3230 626532588 626531771 0.000000e+00 1371.0
14 TraesCS1B01G076200 chr4A 94.276 297 17 0 3290 3586 691286247 691286543 4.250000e-124 455.0
15 TraesCS1B01G076200 chr4A 90.842 273 22 3 1 272 413610663 413610933 2.650000e-96 363.0
16 TraesCS1B01G076200 chr4A 96.923 65 2 0 3228 3292 10160130 10160066 3.810000e-20 110.0
17 TraesCS1B01G076200 chr5B 98.020 2424 46 2 1 2424 457391273 457388852 0.000000e+00 4209.0
18 TraesCS1B01G076200 chr5B 97.612 2094 48 2 1 2093 493911231 493913323 0.000000e+00 3589.0
19 TraesCS1B01G076200 chr5B 98.171 820 13 2 2414 3231 457388764 457387945 0.000000e+00 1430.0
20 TraesCS1B01G076200 chr5B 97.436 819 20 1 2411 3228 48320707 48321525 0.000000e+00 1395.0
21 TraesCS1B01G076200 chr5B 97.006 501 13 2 1925 2424 48320123 48320622 0.000000e+00 841.0
22 TraesCS1B01G076200 chr5B 93.399 303 20 0 3284 3586 271100964 271100662 1.980000e-122 449.0
23 TraesCS1B01G076200 chr5B 94.218 294 17 0 3292 3585 334888617 334888910 1.980000e-122 449.0
24 TraesCS1B01G076200 chr5B 95.588 68 3 0 3228 3295 24503250 24503317 3.810000e-20 110.0
25 TraesCS1B01G076200 chr5A 97.956 2251 44 1 1 2251 41484866 41482618 0.000000e+00 3901.0
26 TraesCS1B01G076200 chr7D 90.893 2273 170 28 1 2251 321476085 321478342 0.000000e+00 3016.0
27 TraesCS1B01G076200 chr7D 85.009 527 57 11 2411 2930 321478619 321479130 1.920000e-142 516.0
28 TraesCS1B01G076200 chr4B 97.662 941 21 1 1484 2424 141440384 141439445 0.000000e+00 1615.0
29 TraesCS1B01G076200 chr4B 96.833 821 24 2 2414 3232 141439357 141438537 0.000000e+00 1371.0
30 TraesCS1B01G076200 chr4B 97.333 375 10 0 2857 3231 17271443 17271069 3.930000e-179 638.0
31 TraesCS1B01G076200 chr4B 92.787 305 20 2 3284 3586 590368895 590368591 1.190000e-119 440.0
32 TraesCS1B01G076200 chr4B 95.455 66 3 0 3228 3293 448308763 448308828 4.930000e-19 106.0
33 TraesCS1B01G076200 chr1A 91.467 1043 81 8 434 1473 570926182 570927219 0.000000e+00 1426.0
34 TraesCS1B01G076200 chr1A 88.848 269 25 5 2001 2266 53414063 53413797 3.470000e-85 326.0
35 TraesCS1B01G076200 chr5D 95.697 674 25 4 2411 3082 500934328 500934999 0.000000e+00 1081.0
36 TraesCS1B01G076200 chr5D 95.973 298 9 2 2127 2424 500933949 500934243 7.010000e-132 481.0
37 TraesCS1B01G076200 chr5D 97.590 166 4 0 3065 3230 500935152 500935317 5.900000e-73 285.0
38 TraesCS1B01G076200 chr2B 91.365 359 31 0 3228 3586 72130678 72131036 3.240000e-135 492.0
39 TraesCS1B01G076200 chr2B 96.923 65 2 0 3228 3292 168632899 168632963 3.810000e-20 110.0
40 TraesCS1B01G076200 chr2B 89.610 77 8 0 3228 3304 118839594 118839670 8.240000e-17 99.0
41 TraesCS1B01G076200 chr2B 87.209 86 7 3 3228 3312 440793949 440794031 1.070000e-15 95.3
42 TraesCS1B01G076200 chr2D 89.444 360 37 1 3228 3586 630032602 630032243 1.530000e-123 453.0
43 TraesCS1B01G076200 chr7B 94.237 295 17 0 3292 3586 645519562 645519268 5.490000e-123 451.0
44 TraesCS1B01G076200 chr7B 87.629 97 10 1 2328 2422 664083192 664083096 1.060000e-20 111.0
45 TraesCS1B01G076200 chr1D 88.433 268 28 3 2000 2266 53403758 53403493 1.620000e-83 320.0
46 TraesCS1B01G076200 chr3A 88.235 187 18 3 2520 2705 53336827 53336644 1.690000e-53 220.0
47 TraesCS1B01G076200 chr3D 87.135 171 12 7 2431 2595 42366064 42366230 6.150000e-43 185.0
48 TraesCS1B01G076200 chr6B 89.610 77 8 0 3228 3304 145185462 145185386 8.240000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G076200 chr1B 59040159 59043766 3607 False 6663.000000 6663 100.0000 1 3608 1 chr1B.!!$F1 3607
1 TraesCS1B01G076200 chr1B 626236821 626237639 818 True 1378.000000 1378 97.0700 2414 3230 1 chr1B.!!$R1 816
2 TraesCS1B01G076200 chr3B 784060344 784063672 3328 True 2810.500000 4265 97.5065 1 3231 2 chr3B.!!$R3 3230
3 TraesCS1B01G076200 chr7A 46727584 46729832 2248 True 3895.000000 3895 97.9120 1 2251 1 chr7A.!!$R1 2250
4 TraesCS1B01G076200 chr7A 7421833 7425161 3328 False 2826.500000 4242 97.9785 1 3231 2 chr7A.!!$F1 3230
5 TraesCS1B01G076200 chr7A 194167193 194171739 4546 False 1407.000000 2326 90.9530 1 2930 2 chr7A.!!$F2 2929
6 TraesCS1B01G076200 chr4A 626531771 626535098 3327 True 2806.500000 4242 97.6060 1 3230 2 chr4A.!!$R2 3229
7 TraesCS1B01G076200 chr5B 493911231 493913323 2092 False 3589.000000 3589 97.6120 1 2093 1 chr5B.!!$F3 2092
8 TraesCS1B01G076200 chr5B 457387945 457391273 3328 True 2819.500000 4209 98.0955 1 3231 2 chr5B.!!$R2 3230
9 TraesCS1B01G076200 chr5B 48320123 48321525 1402 False 1118.000000 1395 97.2210 1925 3228 2 chr5B.!!$F4 1303
10 TraesCS1B01G076200 chr5A 41482618 41484866 2248 True 3901.000000 3901 97.9560 1 2251 1 chr5A.!!$R1 2250
11 TraesCS1B01G076200 chr7D 321476085 321479130 3045 False 1766.000000 3016 87.9510 1 2930 2 chr7D.!!$F1 2929
12 TraesCS1B01G076200 chr4B 141438537 141440384 1847 True 1493.000000 1615 97.2475 1484 3232 2 chr4B.!!$R3 1748
13 TraesCS1B01G076200 chr1A 570926182 570927219 1037 False 1426.000000 1426 91.4670 434 1473 1 chr1A.!!$F1 1039
14 TraesCS1B01G076200 chr5D 500933949 500935317 1368 False 615.666667 1081 96.4200 2127 3230 3 chr5D.!!$F1 1103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 2.364632 CCAAAATGTGATGGTCGCCTA 58.635 47.619 0.00 0.0 31.84 3.93 F
1176 1213 3.161866 GGCAAGGTTTACCAAGGATCAA 58.838 45.455 1.13 0.0 38.89 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 3633 2.890945 GAGGAGGCTGAGGACTAATCTC 59.109 54.545 0.0 0.0 0.0 2.75 R
3138 5086 0.908910 ACCGAATACATGCCACAGGA 59.091 50.000 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.364632 CCAAAATGTGATGGTCGCCTA 58.635 47.619 0.00 0.00 31.84 3.93
579 580 5.759059 TCCTACATCCTCAAGCAATCAAAT 58.241 37.500 0.00 0.00 0.00 2.32
1176 1213 3.161866 GGCAAGGTTTACCAAGGATCAA 58.838 45.455 1.13 0.00 38.89 2.57
1597 3167 4.589216 TTGCAAGCACTAGCAAGAAAAT 57.411 36.364 0.00 0.00 44.98 1.82
1992 3564 4.219070 CCTCTGATGTTTTCAAGGATGCAA 59.781 41.667 0.00 0.00 35.95 4.08
2061 3633 2.260481 GGCTAAAGAAGGAAGTCGACG 58.740 52.381 10.46 0.00 0.00 5.12
2173 3745 3.052455 TGAGCGAGTATTCCTTTGCAA 57.948 42.857 0.00 0.00 0.00 4.08
2210 3782 3.253432 GGCGGTATTCCTTCAATCAATCC 59.747 47.826 0.00 0.00 0.00 3.01
2252 3824 7.121315 GGTATTGTCTGTGCTCCTTTTATTTCT 59.879 37.037 0.00 0.00 0.00 2.52
2705 4478 4.309099 AGCGCACAATGATTGAACAATTT 58.691 34.783 12.80 0.00 0.00 1.82
2750 4525 1.081641 GCGGACGAGACGAGACAAA 60.082 57.895 0.00 0.00 0.00 2.83
2758 4533 3.119101 ACGAGACGAGACAAATATGCCTT 60.119 43.478 0.00 0.00 0.00 4.35
2806 4581 6.935167 TGACTTTGAGCACTATGAGTTATCA 58.065 36.000 0.00 0.00 40.50 2.15
2971 4749 4.091509 CGTGTGTATTAGAAAGTCTGTGCC 59.908 45.833 0.00 0.00 0.00 5.01
2993 4771 5.392595 GCCGTTGAAAAGCTATACATTTGGA 60.393 40.000 0.00 0.00 0.00 3.53
3129 5077 0.753262 GGAGGCTAGAAGCGGAATGA 59.247 55.000 0.00 0.00 43.62 2.57
3138 5086 6.238759 GGCTAGAAGCGGAATGAAAATACAAT 60.239 38.462 0.00 0.00 43.62 2.71
3232 5180 4.424711 CCAAGCGGGGCCTAAGCA 62.425 66.667 18.10 0.00 42.56 3.91
3233 5181 2.361104 CAAGCGGGGCCTAAGCAA 60.361 61.111 18.10 0.00 42.56 3.91
3234 5182 1.976474 CAAGCGGGGCCTAAGCAAA 60.976 57.895 18.10 0.00 42.56 3.68
3235 5183 1.000359 AAGCGGGGCCTAAGCAAAT 60.000 52.632 18.10 4.76 42.56 2.32
3236 5184 0.614697 AAGCGGGGCCTAAGCAAATT 60.615 50.000 18.10 4.72 42.56 1.82
3237 5185 0.614697 AGCGGGGCCTAAGCAAATTT 60.615 50.000 18.10 0.00 42.56 1.82
3238 5186 0.460109 GCGGGGCCTAAGCAAATTTG 60.460 55.000 14.03 14.03 42.56 2.32
3264 5212 5.686159 AGTTGGACTCGATATTACTACCG 57.314 43.478 0.00 0.00 0.00 4.02
3265 5213 5.371526 AGTTGGACTCGATATTACTACCGA 58.628 41.667 0.00 0.00 0.00 4.69
3266 5214 5.824624 AGTTGGACTCGATATTACTACCGAA 59.175 40.000 0.00 0.00 0.00 4.30
3267 5215 5.936686 TGGACTCGATATTACTACCGAAG 57.063 43.478 0.00 0.00 0.00 3.79
3268 5216 5.371526 TGGACTCGATATTACTACCGAAGT 58.628 41.667 0.00 0.00 42.62 3.01
3269 5217 5.824624 TGGACTCGATATTACTACCGAAGTT 59.175 40.000 0.00 0.00 39.80 2.66
3270 5218 6.992123 TGGACTCGATATTACTACCGAAGTTA 59.008 38.462 0.00 0.00 39.80 2.24
3271 5219 7.041780 TGGACTCGATATTACTACCGAAGTTAC 60.042 40.741 0.00 0.00 39.80 2.50
3272 5220 7.172361 GGACTCGATATTACTACCGAAGTTACT 59.828 40.741 0.00 0.00 39.80 2.24
3273 5221 9.197694 GACTCGATATTACTACCGAAGTTACTA 57.802 37.037 0.00 0.00 39.80 1.82
3274 5222 8.983724 ACTCGATATTACTACCGAAGTTACTAC 58.016 37.037 0.00 0.00 39.80 2.73
3275 5223 8.311650 TCGATATTACTACCGAAGTTACTACC 57.688 38.462 0.00 0.00 39.80 3.18
3276 5224 7.931407 TCGATATTACTACCGAAGTTACTACCA 59.069 37.037 0.00 0.00 39.80 3.25
3277 5225 8.012241 CGATATTACTACCGAAGTTACTACCAC 58.988 40.741 0.00 0.00 39.80 4.16
3278 5226 5.897377 TTACTACCGAAGTTACTACCACC 57.103 43.478 0.00 0.00 39.80 4.61
3279 5227 2.749621 ACTACCGAAGTTACTACCACCG 59.250 50.000 0.00 0.00 33.35 4.94
3280 5228 1.620822 ACCGAAGTTACTACCACCGT 58.379 50.000 0.00 0.00 0.00 4.83
3281 5229 1.270550 ACCGAAGTTACTACCACCGTG 59.729 52.381 0.00 0.00 0.00 4.94
3282 5230 1.403249 CCGAAGTTACTACCACCGTGG 60.403 57.143 16.47 16.47 45.02 4.94
3283 5231 1.718396 GAAGTTACTACCACCGTGGC 58.282 55.000 17.99 0.00 42.67 5.01
3284 5232 1.274447 GAAGTTACTACCACCGTGGCT 59.726 52.381 17.99 7.59 42.67 4.75
3285 5233 2.220653 AGTTACTACCACCGTGGCTA 57.779 50.000 17.99 8.32 42.67 3.93
3286 5234 2.097825 AGTTACTACCACCGTGGCTAG 58.902 52.381 17.99 18.18 42.67 3.42
3287 5235 1.821136 GTTACTACCACCGTGGCTAGT 59.179 52.381 24.18 24.18 42.67 2.57
3288 5236 1.755179 TACTACCACCGTGGCTAGTC 58.245 55.000 24.33 0.00 42.67 2.59
3289 5237 0.039326 ACTACCACCGTGGCTAGTCT 59.961 55.000 17.99 0.00 42.67 3.24
3290 5238 1.183549 CTACCACCGTGGCTAGTCTT 58.816 55.000 17.99 0.00 42.67 3.01
3291 5239 2.291153 ACTACCACCGTGGCTAGTCTTA 60.291 50.000 17.99 0.00 42.67 2.10
3292 5240 1.183549 ACCACCGTGGCTAGTCTTAG 58.816 55.000 17.99 0.00 42.67 2.18
3293 5241 1.272313 ACCACCGTGGCTAGTCTTAGA 60.272 52.381 17.99 0.00 42.67 2.10
3294 5242 1.405821 CCACCGTGGCTAGTCTTAGAG 59.594 57.143 4.16 0.00 0.00 2.43
3295 5243 1.405821 CACCGTGGCTAGTCTTAGAGG 59.594 57.143 0.00 0.00 0.00 3.69
3296 5244 1.033574 CCGTGGCTAGTCTTAGAGGG 58.966 60.000 0.00 0.00 0.00 4.30
3297 5245 1.685491 CCGTGGCTAGTCTTAGAGGGT 60.685 57.143 0.00 0.00 0.00 4.34
3298 5246 1.405821 CGTGGCTAGTCTTAGAGGGTG 59.594 57.143 0.00 0.00 0.00 4.61
3299 5247 1.137282 GTGGCTAGTCTTAGAGGGTGC 59.863 57.143 0.00 0.00 0.00 5.01
3300 5248 1.007238 TGGCTAGTCTTAGAGGGTGCT 59.993 52.381 0.00 0.00 0.00 4.40
3301 5249 2.112190 GGCTAGTCTTAGAGGGTGCTT 58.888 52.381 0.00 0.00 0.00 3.91
3302 5250 2.159028 GGCTAGTCTTAGAGGGTGCTTG 60.159 54.545 0.00 0.00 0.00 4.01
3303 5251 2.159028 GCTAGTCTTAGAGGGTGCTTGG 60.159 54.545 0.00 0.00 0.00 3.61
3304 5252 2.327325 AGTCTTAGAGGGTGCTTGGA 57.673 50.000 0.00 0.00 0.00 3.53
3305 5253 2.839228 AGTCTTAGAGGGTGCTTGGAT 58.161 47.619 0.00 0.00 0.00 3.41
3306 5254 3.995636 AGTCTTAGAGGGTGCTTGGATA 58.004 45.455 0.00 0.00 0.00 2.59
3307 5255 3.707102 AGTCTTAGAGGGTGCTTGGATAC 59.293 47.826 0.00 0.00 0.00 2.24
3308 5256 2.693591 TCTTAGAGGGTGCTTGGATACG 59.306 50.000 0.00 0.00 42.51 3.06
3309 5257 2.154567 TAGAGGGTGCTTGGATACGT 57.845 50.000 0.00 0.00 42.51 3.57
3310 5258 2.154567 AGAGGGTGCTTGGATACGTA 57.845 50.000 0.00 0.00 42.51 3.57
3311 5259 1.755380 AGAGGGTGCTTGGATACGTAC 59.245 52.381 0.00 0.00 42.51 3.67
3312 5260 1.755380 GAGGGTGCTTGGATACGTACT 59.245 52.381 0.00 0.00 42.51 2.73
3313 5261 2.954318 GAGGGTGCTTGGATACGTACTA 59.046 50.000 0.00 0.00 42.51 1.82
3314 5262 2.957006 AGGGTGCTTGGATACGTACTAG 59.043 50.000 0.00 0.00 42.51 2.57
3315 5263 2.692041 GGGTGCTTGGATACGTACTAGT 59.308 50.000 0.00 0.00 42.51 2.57
3316 5264 3.243334 GGGTGCTTGGATACGTACTAGTC 60.243 52.174 0.00 0.00 42.51 2.59
3317 5265 3.243334 GGTGCTTGGATACGTACTAGTCC 60.243 52.174 0.00 1.13 42.51 3.85
3318 5266 2.954318 TGCTTGGATACGTACTAGTCCC 59.046 50.000 0.00 0.00 42.51 4.46
3319 5267 2.954318 GCTTGGATACGTACTAGTCCCA 59.046 50.000 0.00 3.35 42.51 4.37
3320 5268 3.573110 GCTTGGATACGTACTAGTCCCAT 59.427 47.826 0.00 0.00 42.51 4.00
3321 5269 4.558898 GCTTGGATACGTACTAGTCCCATG 60.559 50.000 0.00 8.23 42.51 3.66
3322 5270 4.442401 TGGATACGTACTAGTCCCATGA 57.558 45.455 0.00 0.00 42.51 3.07
3323 5271 4.139786 TGGATACGTACTAGTCCCATGAC 58.860 47.826 0.00 0.00 40.25 3.06
3325 5273 5.072193 TGGATACGTACTAGTCCCATGACTA 59.928 44.000 0.00 2.74 45.97 2.59
3326 5274 6.409579 TGGATACGTACTAGTCCCATGACTAA 60.410 42.308 0.00 0.00 46.47 2.24
3327 5275 7.855368 TGGATACGTACTAGTCCCATGACTAAA 60.855 40.741 0.00 0.00 46.47 1.85
3336 5284 4.514401 GTCCCATGACTAAAAGTAGTGGG 58.486 47.826 17.22 17.22 46.41 4.61
3342 5290 8.801882 CCATGACTAAAAGTAGTGGGAATAAA 57.198 34.615 0.00 0.00 40.82 1.40
3343 5291 9.238368 CCATGACTAAAAGTAGTGGGAATAAAA 57.762 33.333 0.00 0.00 40.82 1.52
3346 5294 9.856162 TGACTAAAAGTAGTGGGAATAAAACTT 57.144 29.630 0.00 0.00 40.82 2.66
3348 5296 8.573885 ACTAAAAGTAGTGGGAATAAAACTTGC 58.426 33.333 0.00 0.00 39.20 4.01
3349 5297 7.597288 AAAAGTAGTGGGAATAAAACTTGCT 57.403 32.000 0.00 0.00 0.00 3.91
3350 5298 8.700439 AAAAGTAGTGGGAATAAAACTTGCTA 57.300 30.769 0.00 0.00 0.00 3.49
3351 5299 7.923414 AAGTAGTGGGAATAAAACTTGCTAG 57.077 36.000 0.00 0.00 0.00 3.42
3352 5300 5.880887 AGTAGTGGGAATAAAACTTGCTAGC 59.119 40.000 8.10 8.10 0.00 3.42
3353 5301 4.017126 AGTGGGAATAAAACTTGCTAGCC 58.983 43.478 13.29 0.00 0.00 3.93
3354 5302 4.017126 GTGGGAATAAAACTTGCTAGCCT 58.983 43.478 13.29 0.00 0.00 4.58
3355 5303 4.096532 GTGGGAATAAAACTTGCTAGCCTC 59.903 45.833 13.29 0.00 0.00 4.70
3356 5304 4.263727 TGGGAATAAAACTTGCTAGCCTCA 60.264 41.667 13.29 0.00 0.00 3.86
3357 5305 4.096532 GGGAATAAAACTTGCTAGCCTCAC 59.903 45.833 13.29 0.00 0.00 3.51
3358 5306 4.096532 GGAATAAAACTTGCTAGCCTCACC 59.903 45.833 13.29 0.00 0.00 4.02
3359 5307 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
3360 5308 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
3361 5309 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
3362 5310 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
3363 5311 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
3364 5312 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
3365 5313 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
3366 5314 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
3367 5315 0.465097 CTAGCCTCACCCATGCTTGG 60.465 60.000 11.68 11.68 43.23 3.61
3368 5316 0.913934 TAGCCTCACCCATGCTTGGA 60.914 55.000 19.85 0.00 46.92 3.53
3369 5317 1.076485 GCCTCACCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
3370 5318 0.183492 GCCTCACCCATGCTTGGATA 59.817 55.000 19.85 4.10 46.92 2.59
3371 5319 1.972872 CCTCACCCATGCTTGGATAC 58.027 55.000 19.85 0.00 46.92 2.24
3372 5320 1.212688 CCTCACCCATGCTTGGATACA 59.787 52.381 19.85 0.49 46.92 2.29
3406 5354 9.817809 AATAGACTAAAATCGAGTTAATGAGCA 57.182 29.630 0.00 0.00 0.00 4.26
3407 5355 9.988815 ATAGACTAAAATCGAGTTAATGAGCAT 57.011 29.630 0.00 0.00 0.00 3.79
3408 5356 8.723942 AGACTAAAATCGAGTTAATGAGCATT 57.276 30.769 0.00 0.97 34.93 3.56
3409 5357 9.167311 AGACTAAAATCGAGTTAATGAGCATTT 57.833 29.630 0.00 0.00 32.50 2.32
3417 5365 9.950496 ATCGAGTTAATGAGCATTTATTATCCT 57.050 29.630 0.52 0.00 32.50 3.24
3418 5366 9.424319 TCGAGTTAATGAGCATTTATTATCCTC 57.576 33.333 0.52 0.00 32.50 3.71
3419 5367 8.660373 CGAGTTAATGAGCATTTATTATCCTCC 58.340 37.037 0.52 0.00 32.50 4.30
3420 5368 9.507329 GAGTTAATGAGCATTTATTATCCTCCA 57.493 33.333 0.52 0.00 32.50 3.86
3421 5369 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
3424 5372 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
3425 5373 6.672593 TGAGCATTTATTATCCTCCAAACCT 58.327 36.000 0.00 0.00 0.00 3.50
3426 5374 7.125391 TGAGCATTTATTATCCTCCAAACCTT 58.875 34.615 0.00 0.00 0.00 3.50
3427 5375 7.285401 TGAGCATTTATTATCCTCCAAACCTTC 59.715 37.037 0.00 0.00 0.00 3.46
3428 5376 6.551227 AGCATTTATTATCCTCCAAACCTTCC 59.449 38.462 0.00 0.00 0.00 3.46
3429 5377 6.323739 GCATTTATTATCCTCCAAACCTTCCA 59.676 38.462 0.00 0.00 0.00 3.53
3430 5378 7.147742 GCATTTATTATCCTCCAAACCTTCCAA 60.148 37.037 0.00 0.00 0.00 3.53
3431 5379 8.927411 CATTTATTATCCTCCAAACCTTCCAAT 58.073 33.333 0.00 0.00 0.00 3.16
3432 5380 8.909423 TTTATTATCCTCCAAACCTTCCAATT 57.091 30.769 0.00 0.00 0.00 2.32
3433 5381 8.533569 TTATTATCCTCCAAACCTTCCAATTC 57.466 34.615 0.00 0.00 0.00 2.17
3434 5382 3.893753 TCCTCCAAACCTTCCAATTCA 57.106 42.857 0.00 0.00 0.00 2.57
3435 5383 3.766545 TCCTCCAAACCTTCCAATTCAG 58.233 45.455 0.00 0.00 0.00 3.02
3436 5384 3.397618 TCCTCCAAACCTTCCAATTCAGA 59.602 43.478 0.00 0.00 0.00 3.27
3437 5385 4.141041 TCCTCCAAACCTTCCAATTCAGAA 60.141 41.667 0.00 0.00 0.00 3.02
3438 5386 4.021981 CCTCCAAACCTTCCAATTCAGAAC 60.022 45.833 0.00 0.00 0.00 3.01
3439 5387 4.803452 TCCAAACCTTCCAATTCAGAACT 58.197 39.130 0.00 0.00 0.00 3.01
3440 5388 4.827284 TCCAAACCTTCCAATTCAGAACTC 59.173 41.667 0.00 0.00 0.00 3.01
3441 5389 4.320494 CCAAACCTTCCAATTCAGAACTCG 60.320 45.833 0.00 0.00 0.00 4.18
3442 5390 2.427506 ACCTTCCAATTCAGAACTCGC 58.572 47.619 0.00 0.00 0.00 5.03
3443 5391 2.224523 ACCTTCCAATTCAGAACTCGCA 60.225 45.455 0.00 0.00 0.00 5.10
3444 5392 3.012518 CCTTCCAATTCAGAACTCGCAT 58.987 45.455 0.00 0.00 0.00 4.73
3445 5393 3.181503 CCTTCCAATTCAGAACTCGCATG 60.182 47.826 0.00 0.00 0.00 4.06
3446 5394 3.057969 TCCAATTCAGAACTCGCATGT 57.942 42.857 0.00 0.00 0.00 3.21
3447 5395 2.743664 TCCAATTCAGAACTCGCATGTG 59.256 45.455 0.00 0.00 0.00 3.21
3448 5396 2.485426 CCAATTCAGAACTCGCATGTGT 59.515 45.455 6.09 0.00 0.00 3.72
3449 5397 3.058016 CCAATTCAGAACTCGCATGTGTT 60.058 43.478 6.09 3.50 34.68 3.32
3450 5398 4.154015 CCAATTCAGAACTCGCATGTGTTA 59.846 41.667 6.09 0.00 32.29 2.41
3451 5399 5.334802 CCAATTCAGAACTCGCATGTGTTAA 60.335 40.000 6.09 0.00 32.29 2.01
3452 5400 5.940192 ATTCAGAACTCGCATGTGTTAAA 57.060 34.783 6.09 1.01 32.29 1.52
3453 5401 4.990543 TCAGAACTCGCATGTGTTAAAG 57.009 40.909 6.09 0.00 32.29 1.85
3454 5402 3.745975 TCAGAACTCGCATGTGTTAAAGG 59.254 43.478 6.09 0.00 32.29 3.11
3455 5403 3.745975 CAGAACTCGCATGTGTTAAAGGA 59.254 43.478 6.09 0.00 32.29 3.36
3456 5404 3.997021 AGAACTCGCATGTGTTAAAGGAG 59.003 43.478 6.09 0.00 32.29 3.69
3457 5405 3.678056 ACTCGCATGTGTTAAAGGAGA 57.322 42.857 6.09 0.00 0.00 3.71
3458 5406 3.589988 ACTCGCATGTGTTAAAGGAGAG 58.410 45.455 6.09 0.00 0.00 3.20
3459 5407 2.932614 CTCGCATGTGTTAAAGGAGAGG 59.067 50.000 6.09 0.00 0.00 3.69
3460 5408 2.565391 TCGCATGTGTTAAAGGAGAGGA 59.435 45.455 6.09 0.00 0.00 3.71
3461 5409 2.932614 CGCATGTGTTAAAGGAGAGGAG 59.067 50.000 0.00 0.00 0.00 3.69
3462 5410 3.617531 CGCATGTGTTAAAGGAGAGGAGT 60.618 47.826 0.00 0.00 0.00 3.85
3463 5411 4.327680 GCATGTGTTAAAGGAGAGGAGTT 58.672 43.478 0.00 0.00 0.00 3.01
3464 5412 5.488341 GCATGTGTTAAAGGAGAGGAGTTA 58.512 41.667 0.00 0.00 0.00 2.24
3465 5413 5.938125 GCATGTGTTAAAGGAGAGGAGTTAA 59.062 40.000 0.00 0.00 0.00 2.01
3466 5414 6.430000 GCATGTGTTAAAGGAGAGGAGTTAAA 59.570 38.462 0.00 0.00 0.00 1.52
3467 5415 7.121315 GCATGTGTTAAAGGAGAGGAGTTAAAT 59.879 37.037 0.00 0.00 0.00 1.40
3468 5416 9.667107 CATGTGTTAAAGGAGAGGAGTTAAATA 57.333 33.333 0.00 0.00 0.00 1.40
3470 5418 9.720769 TGTGTTAAAGGAGAGGAGTTAAATAAG 57.279 33.333 0.00 0.00 0.00 1.73
3471 5419 9.163899 GTGTTAAAGGAGAGGAGTTAAATAAGG 57.836 37.037 0.00 0.00 0.00 2.69
3472 5420 9.108111 TGTTAAAGGAGAGGAGTTAAATAAGGA 57.892 33.333 0.00 0.00 0.00 3.36
3473 5421 9.955102 GTTAAAGGAGAGGAGTTAAATAAGGAA 57.045 33.333 0.00 0.00 0.00 3.36
3476 5424 8.450780 AAGGAGAGGAGTTAAATAAGGAAAGA 57.549 34.615 0.00 0.00 0.00 2.52
3477 5425 8.084985 AGGAGAGGAGTTAAATAAGGAAAGAG 57.915 38.462 0.00 0.00 0.00 2.85
3478 5426 7.901861 AGGAGAGGAGTTAAATAAGGAAAGAGA 59.098 37.037 0.00 0.00 0.00 3.10
3479 5427 8.201464 GGAGAGGAGTTAAATAAGGAAAGAGAG 58.799 40.741 0.00 0.00 0.00 3.20
3480 5428 8.084985 AGAGGAGTTAAATAAGGAAAGAGAGG 57.915 38.462 0.00 0.00 0.00 3.69
3481 5429 7.901861 AGAGGAGTTAAATAAGGAAAGAGAGGA 59.098 37.037 0.00 0.00 0.00 3.71
3482 5430 7.853299 AGGAGTTAAATAAGGAAAGAGAGGAC 58.147 38.462 0.00 0.00 0.00 3.85
3483 5431 7.680739 AGGAGTTAAATAAGGAAAGAGAGGACT 59.319 37.037 0.00 0.00 0.00 3.85
3484 5432 8.979534 GGAGTTAAATAAGGAAAGAGAGGACTA 58.020 37.037 0.00 0.00 0.00 2.59
3490 5438 9.674068 AAATAAGGAAAGAGAGGACTAATTCAC 57.326 33.333 0.00 0.00 0.00 3.18
3491 5439 6.688073 AAGGAAAGAGAGGACTAATTCACA 57.312 37.500 0.00 0.00 0.00 3.58
3492 5440 6.882768 AGGAAAGAGAGGACTAATTCACAT 57.117 37.500 0.00 0.00 0.00 3.21
3493 5441 7.264294 AGGAAAGAGAGGACTAATTCACATT 57.736 36.000 0.00 0.00 0.00 2.71
3494 5442 7.694093 AGGAAAGAGAGGACTAATTCACATTT 58.306 34.615 0.00 0.00 0.00 2.32
3495 5443 8.166726 AGGAAAGAGAGGACTAATTCACATTTT 58.833 33.333 0.00 0.00 0.00 1.82
3496 5444 9.449719 GGAAAGAGAGGACTAATTCACATTTTA 57.550 33.333 0.00 0.00 0.00 1.52
3501 5449 9.535878 GAGAGGACTAATTCACATTTTAGTAGG 57.464 37.037 0.00 0.00 38.45 3.18
3502 5450 9.268282 AGAGGACTAATTCACATTTTAGTAGGA 57.732 33.333 0.00 0.00 38.45 2.94
3510 5458 7.921786 TTCACATTTTAGTAGGATTCCACTG 57.078 36.000 5.29 0.00 0.00 3.66
3511 5459 7.252612 TCACATTTTAGTAGGATTCCACTGA 57.747 36.000 5.29 1.11 0.00 3.41
3512 5460 7.103641 TCACATTTTAGTAGGATTCCACTGAC 58.896 38.462 5.29 0.00 0.00 3.51
3513 5461 7.038302 TCACATTTTAGTAGGATTCCACTGACT 60.038 37.037 5.29 5.31 0.00 3.41
3514 5462 8.258007 CACATTTTAGTAGGATTCCACTGACTA 58.742 37.037 5.29 4.40 0.00 2.59
3515 5463 8.822805 ACATTTTAGTAGGATTCCACTGACTAA 58.177 33.333 5.29 9.72 0.00 2.24
3516 5464 9.667107 CATTTTAGTAGGATTCCACTGACTAAA 57.333 33.333 18.56 18.56 37.51 1.85
3549 5497 7.354025 GTCTCAAGACTAGTTTTAGCCTTTC 57.646 40.000 0.00 0.00 41.65 2.62
3550 5498 7.156000 GTCTCAAGACTAGTTTTAGCCTTTCT 58.844 38.462 0.00 0.00 41.65 2.52
3551 5499 7.658167 GTCTCAAGACTAGTTTTAGCCTTTCTT 59.342 37.037 0.00 0.00 41.65 2.52
3552 5500 8.211629 TCTCAAGACTAGTTTTAGCCTTTCTTT 58.788 33.333 0.00 0.00 28.41 2.52
3553 5501 9.490379 CTCAAGACTAGTTTTAGCCTTTCTTTA 57.510 33.333 0.00 0.00 28.41 1.85
3554 5502 9.490379 TCAAGACTAGTTTTAGCCTTTCTTTAG 57.510 33.333 0.00 0.00 28.41 1.85
3555 5503 9.274206 CAAGACTAGTTTTAGCCTTTCTTTAGT 57.726 33.333 0.00 0.00 28.41 2.24
3556 5504 9.491675 AAGACTAGTTTTAGCCTTTCTTTAGTC 57.508 33.333 0.00 0.00 36.42 2.59
3557 5505 8.648693 AGACTAGTTTTAGCCTTTCTTTAGTCA 58.351 33.333 0.00 0.00 37.83 3.41
3558 5506 9.269453 GACTAGTTTTAGCCTTTCTTTAGTCAA 57.731 33.333 0.00 0.00 36.28 3.18
3559 5507 9.623000 ACTAGTTTTAGCCTTTCTTTAGTCAAA 57.377 29.630 0.00 0.00 0.00 2.69
3561 5509 8.747538 AGTTTTAGCCTTTCTTTAGTCAAAGA 57.252 30.769 0.00 0.00 46.64 2.52
3578 5526 7.597386 AGTCAAAGATGATTGAAACTTTAGCC 58.403 34.615 0.00 0.00 40.76 3.93
3579 5527 7.449704 AGTCAAAGATGATTGAAACTTTAGCCT 59.550 33.333 0.00 0.00 40.76 4.58
3580 5528 7.752686 GTCAAAGATGATTGAAACTTTAGCCTC 59.247 37.037 0.00 0.00 40.76 4.70
3581 5529 7.667219 TCAAAGATGATTGAAACTTTAGCCTCT 59.333 33.333 0.00 0.00 36.42 3.69
3582 5530 8.950210 CAAAGATGATTGAAACTTTAGCCTCTA 58.050 33.333 0.00 0.00 32.46 2.43
3583 5531 9.520515 AAAGATGATTGAAACTTTAGCCTCTAA 57.479 29.630 0.00 0.00 32.04 2.10
3584 5532 9.520515 AAGATGATTGAAACTTTAGCCTCTAAA 57.479 29.630 0.00 0.00 0.00 1.85
3585 5533 9.520515 AGATGATTGAAACTTTAGCCTCTAAAA 57.479 29.630 1.38 0.00 0.00 1.52
3592 5540 9.227777 TGAAACTTTAGCCTCTAAAAATAGTCC 57.772 33.333 1.38 0.00 0.00 3.85
3593 5541 8.577048 AAACTTTAGCCTCTAAAAATAGTCCC 57.423 34.615 1.38 0.00 0.00 4.46
3594 5542 7.512117 ACTTTAGCCTCTAAAAATAGTCCCT 57.488 36.000 1.38 0.00 0.00 4.20
3595 5543 7.929959 ACTTTAGCCTCTAAAAATAGTCCCTT 58.070 34.615 1.38 0.00 0.00 3.95
3596 5544 7.829706 ACTTTAGCCTCTAAAAATAGTCCCTTG 59.170 37.037 1.38 0.00 0.00 3.61
3597 5545 7.504926 TTAGCCTCTAAAAATAGTCCCTTGA 57.495 36.000 0.00 0.00 0.00 3.02
3598 5546 6.388619 AGCCTCTAAAAATAGTCCCTTGAA 57.611 37.500 0.00 0.00 0.00 2.69
3599 5547 6.974795 AGCCTCTAAAAATAGTCCCTTGAAT 58.025 36.000 0.00 0.00 0.00 2.57
3600 5548 8.102484 AGCCTCTAAAAATAGTCCCTTGAATA 57.898 34.615 0.00 0.00 0.00 1.75
3601 5549 7.993758 AGCCTCTAAAAATAGTCCCTTGAATAC 59.006 37.037 0.00 0.00 0.00 1.89
3602 5550 7.773690 GCCTCTAAAAATAGTCCCTTGAATACA 59.226 37.037 0.00 0.00 0.00 2.29
3603 5551 9.681062 CCTCTAAAAATAGTCCCTTGAATACAA 57.319 33.333 0.00 0.00 34.65 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.978687 ACAAAGTTGAGATCGAAGTCGT 58.021 40.909 0.00 0.00 40.80 4.34
579 580 6.202331 TCTCTCATAGAATTACCAAGGTCCA 58.798 40.000 0.00 0.00 0.00 4.02
1176 1213 5.753721 ACTGAGCTTCCTTATCTTGAACT 57.246 39.130 0.00 0.00 0.00 3.01
1281 1318 5.576563 TCTCTTCCCATTTTTCAGGTGTA 57.423 39.130 0.00 0.00 0.00 2.90
1284 1321 5.261040 TGATCTCTTCCCATTTTTCAGGT 57.739 39.130 0.00 0.00 0.00 4.00
1597 3167 6.358974 TGTCATCTCTTCCATGTCTTGTAA 57.641 37.500 0.00 0.00 0.00 2.41
1992 3564 3.758554 CCCAGGAAAATCTCACGATTTGT 59.241 43.478 1.50 0.00 46.36 2.83
2061 3633 2.890945 GAGGAGGCTGAGGACTAATCTC 59.109 54.545 0.00 0.00 0.00 2.75
2173 3745 1.066143 ACCGCCAGATGAAAATCGAGT 60.066 47.619 0.00 0.00 0.00 4.18
2210 3782 2.672961 TACCTTTGATCAGAGCACCG 57.327 50.000 7.74 0.00 0.00 4.94
2705 4478 8.815565 TGCTACATAACCAAATTTATTGAGGA 57.184 30.769 0.00 0.00 0.00 3.71
2806 4581 7.123098 TGCAATCATCCATTTGAACATAGTTCT 59.877 33.333 10.79 0.00 0.00 3.01
2943 4721 7.541091 CACAGACTTTCTAATACACACGTACAT 59.459 37.037 0.00 0.00 0.00 2.29
2971 4749 6.197096 GCATCCAAATGTATAGCTTTTCAACG 59.803 38.462 0.00 0.00 35.18 4.10
3008 4786 7.415541 CCAAGTTGCAGCACTACATATATGTTT 60.416 37.037 22.90 8.56 41.97 2.83
3129 5077 7.422465 AATACATGCCACAGGATTGTATTTT 57.578 32.000 13.64 1.39 38.19 1.82
3138 5086 0.908910 ACCGAATACATGCCACAGGA 59.091 50.000 0.00 0.00 0.00 3.86
3232 5180 3.476552 TCGAGTCCAACTCAGCAAATTT 58.523 40.909 7.78 0.00 45.30 1.82
3233 5181 3.126001 TCGAGTCCAACTCAGCAAATT 57.874 42.857 7.78 0.00 45.30 1.82
3234 5182 2.839486 TCGAGTCCAACTCAGCAAAT 57.161 45.000 7.78 0.00 45.30 2.32
3235 5183 2.839486 ATCGAGTCCAACTCAGCAAA 57.161 45.000 7.78 0.00 45.30 3.68
3236 5184 4.471904 AATATCGAGTCCAACTCAGCAA 57.528 40.909 7.78 0.00 45.30 3.91
3237 5185 4.645136 AGTAATATCGAGTCCAACTCAGCA 59.355 41.667 7.78 0.00 45.30 4.41
3238 5186 5.189659 AGTAATATCGAGTCCAACTCAGC 57.810 43.478 7.78 0.00 45.30 4.26
3239 5187 6.566187 CGGTAGTAATATCGAGTCCAACTCAG 60.566 46.154 0.00 1.37 45.30 3.35
3240 5188 5.237996 CGGTAGTAATATCGAGTCCAACTCA 59.762 44.000 0.00 0.00 45.30 3.41
3241 5189 5.468072 TCGGTAGTAATATCGAGTCCAACTC 59.532 44.000 0.63 0.00 41.71 3.01
3242 5190 5.371526 TCGGTAGTAATATCGAGTCCAACT 58.628 41.667 0.63 0.00 0.00 3.16
3243 5191 5.679734 TCGGTAGTAATATCGAGTCCAAC 57.320 43.478 0.63 0.00 0.00 3.77
3244 5192 5.824624 ACTTCGGTAGTAATATCGAGTCCAA 59.175 40.000 5.64 0.00 34.56 3.53
3245 5193 5.371526 ACTTCGGTAGTAATATCGAGTCCA 58.628 41.667 5.64 0.00 34.56 4.02
3246 5194 5.938438 ACTTCGGTAGTAATATCGAGTCC 57.062 43.478 5.64 0.00 34.56 3.85
3247 5195 8.082334 AGTAACTTCGGTAGTAATATCGAGTC 57.918 38.462 5.64 0.00 35.54 3.36
3248 5196 8.983724 GTAGTAACTTCGGTAGTAATATCGAGT 58.016 37.037 5.64 4.28 35.54 4.18
3249 5197 8.439286 GGTAGTAACTTCGGTAGTAATATCGAG 58.561 40.741 5.64 3.70 35.54 4.04
3250 5198 7.931407 TGGTAGTAACTTCGGTAGTAATATCGA 59.069 37.037 0.63 0.63 35.54 3.59
3251 5199 8.012241 GTGGTAGTAACTTCGGTAGTAATATCG 58.988 40.741 0.00 0.00 35.54 2.92
3252 5200 8.293157 GGTGGTAGTAACTTCGGTAGTAATATC 58.707 40.741 0.00 0.00 35.54 1.63
3253 5201 7.041098 CGGTGGTAGTAACTTCGGTAGTAATAT 60.041 40.741 0.00 0.00 35.54 1.28
3254 5202 6.260050 CGGTGGTAGTAACTTCGGTAGTAATA 59.740 42.308 0.00 0.00 35.54 0.98
3255 5203 5.066505 CGGTGGTAGTAACTTCGGTAGTAAT 59.933 44.000 0.00 0.00 35.54 1.89
3256 5204 4.394920 CGGTGGTAGTAACTTCGGTAGTAA 59.605 45.833 0.00 0.00 35.54 2.24
3257 5205 3.938963 CGGTGGTAGTAACTTCGGTAGTA 59.061 47.826 0.00 0.00 35.54 1.82
3258 5206 2.749621 CGGTGGTAGTAACTTCGGTAGT 59.250 50.000 0.00 0.00 39.32 2.73
3259 5207 2.749621 ACGGTGGTAGTAACTTCGGTAG 59.250 50.000 5.92 0.00 0.00 3.18
3260 5208 2.487762 CACGGTGGTAGTAACTTCGGTA 59.512 50.000 0.00 0.00 0.00 4.02
3261 5209 1.270550 CACGGTGGTAGTAACTTCGGT 59.729 52.381 0.00 0.00 0.00 4.69
3262 5210 1.403249 CCACGGTGGTAGTAACTTCGG 60.403 57.143 19.15 0.00 31.35 4.30
3263 5211 1.986698 CCACGGTGGTAGTAACTTCG 58.013 55.000 19.15 0.48 31.35 3.79
3264 5212 1.274447 AGCCACGGTGGTAGTAACTTC 59.726 52.381 26.86 8.14 40.46 3.01
3265 5213 1.345063 AGCCACGGTGGTAGTAACTT 58.655 50.000 26.86 2.14 40.46 2.66
3266 5214 2.097825 CTAGCCACGGTGGTAGTAACT 58.902 52.381 26.86 16.60 40.46 2.24
3267 5215 1.821136 ACTAGCCACGGTGGTAGTAAC 59.179 52.381 26.68 13.69 40.46 2.50
3268 5216 2.094675 GACTAGCCACGGTGGTAGTAA 58.905 52.381 27.32 12.63 40.46 2.24
3269 5217 1.283029 AGACTAGCCACGGTGGTAGTA 59.717 52.381 27.32 17.85 40.46 1.82
3270 5218 0.039326 AGACTAGCCACGGTGGTAGT 59.961 55.000 27.48 27.48 40.46 2.73
3271 5219 1.183549 AAGACTAGCCACGGTGGTAG 58.816 55.000 26.86 24.82 40.46 3.18
3272 5220 2.025981 TCTAAGACTAGCCACGGTGGTA 60.026 50.000 26.86 16.55 40.46 3.25
3273 5221 1.183549 CTAAGACTAGCCACGGTGGT 58.816 55.000 26.86 16.32 40.46 4.16
3274 5222 1.405821 CTCTAAGACTAGCCACGGTGG 59.594 57.143 22.87 22.87 41.55 4.61
3275 5223 1.405821 CCTCTAAGACTAGCCACGGTG 59.594 57.143 0.00 0.00 0.00 4.94
3276 5224 1.685491 CCCTCTAAGACTAGCCACGGT 60.685 57.143 0.00 0.00 0.00 4.83
3277 5225 1.033574 CCCTCTAAGACTAGCCACGG 58.966 60.000 0.00 0.00 0.00 4.94
3278 5226 1.405821 CACCCTCTAAGACTAGCCACG 59.594 57.143 0.00 0.00 0.00 4.94
3279 5227 1.137282 GCACCCTCTAAGACTAGCCAC 59.863 57.143 0.00 0.00 0.00 5.01
3280 5228 1.007238 AGCACCCTCTAAGACTAGCCA 59.993 52.381 0.00 0.00 0.00 4.75
3281 5229 1.783071 AGCACCCTCTAAGACTAGCC 58.217 55.000 0.00 0.00 0.00 3.93
3282 5230 2.159028 CCAAGCACCCTCTAAGACTAGC 60.159 54.545 0.00 0.00 0.00 3.42
3283 5231 3.366396 TCCAAGCACCCTCTAAGACTAG 58.634 50.000 0.00 0.00 0.00 2.57
3284 5232 3.468071 TCCAAGCACCCTCTAAGACTA 57.532 47.619 0.00 0.00 0.00 2.59
3285 5233 2.327325 TCCAAGCACCCTCTAAGACT 57.673 50.000 0.00 0.00 0.00 3.24
3286 5234 3.491104 CGTATCCAAGCACCCTCTAAGAC 60.491 52.174 0.00 0.00 0.00 3.01
3287 5235 2.693591 CGTATCCAAGCACCCTCTAAGA 59.306 50.000 0.00 0.00 0.00 2.10
3288 5236 2.431057 ACGTATCCAAGCACCCTCTAAG 59.569 50.000 0.00 0.00 0.00 2.18
3289 5237 2.463752 ACGTATCCAAGCACCCTCTAA 58.536 47.619 0.00 0.00 0.00 2.10
3290 5238 2.154567 ACGTATCCAAGCACCCTCTA 57.845 50.000 0.00 0.00 0.00 2.43
3291 5239 1.755380 GTACGTATCCAAGCACCCTCT 59.245 52.381 0.00 0.00 0.00 3.69
3292 5240 1.755380 AGTACGTATCCAAGCACCCTC 59.245 52.381 0.00 0.00 0.00 4.30
3293 5241 1.861982 AGTACGTATCCAAGCACCCT 58.138 50.000 0.00 0.00 0.00 4.34
3294 5242 2.692041 ACTAGTACGTATCCAAGCACCC 59.308 50.000 0.00 0.00 0.00 4.61
3295 5243 3.243334 GGACTAGTACGTATCCAAGCACC 60.243 52.174 7.87 3.90 0.00 5.01
3296 5244 3.243334 GGGACTAGTACGTATCCAAGCAC 60.243 52.174 13.53 0.00 32.45 4.40
3297 5245 2.954318 GGGACTAGTACGTATCCAAGCA 59.046 50.000 13.53 0.00 32.45 3.91
3298 5246 2.954318 TGGGACTAGTACGTATCCAAGC 59.046 50.000 13.53 0.00 32.45 4.01
3299 5247 4.825634 TCATGGGACTAGTACGTATCCAAG 59.174 45.833 13.53 5.41 32.45 3.61
3300 5248 4.581824 GTCATGGGACTAGTACGTATCCAA 59.418 45.833 13.53 4.18 40.99 3.53
3301 5249 4.139786 GTCATGGGACTAGTACGTATCCA 58.860 47.826 13.53 8.56 40.99 3.41
3302 5250 4.762956 GTCATGGGACTAGTACGTATCC 57.237 50.000 0.00 0.94 40.99 2.59
3316 5264 4.837093 TCCCACTACTTTTAGTCATGGG 57.163 45.455 16.70 16.70 46.94 4.00
3317 5265 8.801882 TTTATTCCCACTACTTTTAGTCATGG 57.198 34.615 0.00 0.00 36.31 3.66
3320 5268 9.856162 AAGTTTTATTCCCACTACTTTTAGTCA 57.144 29.630 0.00 0.00 36.31 3.41
3322 5270 8.573885 GCAAGTTTTATTCCCACTACTTTTAGT 58.426 33.333 0.00 0.00 39.30 2.24
3323 5271 8.793592 AGCAAGTTTTATTCCCACTACTTTTAG 58.206 33.333 0.00 0.00 0.00 1.85
3324 5272 8.700439 AGCAAGTTTTATTCCCACTACTTTTA 57.300 30.769 0.00 0.00 0.00 1.52
3325 5273 7.597288 AGCAAGTTTTATTCCCACTACTTTT 57.403 32.000 0.00 0.00 0.00 2.27
3326 5274 7.094334 GCTAGCAAGTTTTATTCCCACTACTTT 60.094 37.037 10.63 0.00 0.00 2.66
3327 5275 6.374613 GCTAGCAAGTTTTATTCCCACTACTT 59.625 38.462 10.63 0.00 0.00 2.24
3328 5276 5.880887 GCTAGCAAGTTTTATTCCCACTACT 59.119 40.000 10.63 0.00 0.00 2.57
3329 5277 5.066117 GGCTAGCAAGTTTTATTCCCACTAC 59.934 44.000 18.24 0.00 0.00 2.73
3330 5278 5.045140 AGGCTAGCAAGTTTTATTCCCACTA 60.045 40.000 18.24 0.00 0.00 2.74
3331 5279 4.017126 GGCTAGCAAGTTTTATTCCCACT 58.983 43.478 18.24 0.00 0.00 4.00
3332 5280 4.017126 AGGCTAGCAAGTTTTATTCCCAC 58.983 43.478 18.24 0.00 0.00 4.61
3333 5281 4.263727 TGAGGCTAGCAAGTTTTATTCCCA 60.264 41.667 18.24 0.00 0.00 4.37
3334 5282 4.096532 GTGAGGCTAGCAAGTTTTATTCCC 59.903 45.833 18.24 0.00 0.00 3.97
3335 5283 4.096532 GGTGAGGCTAGCAAGTTTTATTCC 59.903 45.833 18.24 1.15 0.00 3.01
3336 5284 4.096532 GGGTGAGGCTAGCAAGTTTTATTC 59.903 45.833 18.24 0.00 0.00 1.75
3337 5285 4.017126 GGGTGAGGCTAGCAAGTTTTATT 58.983 43.478 18.24 0.00 0.00 1.40
3338 5286 3.010138 TGGGTGAGGCTAGCAAGTTTTAT 59.990 43.478 18.24 0.00 0.00 1.40
3339 5287 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
3340 5288 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
3341 5289 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
3342 5290 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
3343 5291 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
3344 5292 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
3345 5293 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
3346 5294 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
3347 5295 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
3348 5296 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
3349 5297 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
3350 5298 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
3380 5328 9.817809 TGCTCATTAACTCGATTTTAGTCTATT 57.182 29.630 0.00 0.00 0.00 1.73
3381 5329 9.988815 ATGCTCATTAACTCGATTTTAGTCTAT 57.011 29.630 0.00 0.00 0.00 1.98
3382 5330 9.817809 AATGCTCATTAACTCGATTTTAGTCTA 57.182 29.630 0.00 0.00 0.00 2.59
3383 5331 8.723942 AATGCTCATTAACTCGATTTTAGTCT 57.276 30.769 0.00 0.00 0.00 3.24
3391 5339 9.950496 AGGATAATAAATGCTCATTAACTCGAT 57.050 29.630 0.00 0.00 0.00 3.59
3392 5340 9.424319 GAGGATAATAAATGCTCATTAACTCGA 57.576 33.333 2.11 0.00 36.64 4.04
3393 5341 8.660373 GGAGGATAATAAATGCTCATTAACTCG 58.340 37.037 8.48 0.00 38.10 4.18
3394 5342 9.507329 TGGAGGATAATAAATGCTCATTAACTC 57.493 33.333 8.48 0.00 38.10 3.01
3395 5343 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
3398 5346 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
3399 5347 7.786464 AGGTTTGGAGGATAATAAATGCTCATT 59.214 33.333 8.48 0.00 38.10 2.57
3400 5348 7.300658 AGGTTTGGAGGATAATAAATGCTCAT 58.699 34.615 8.48 0.00 38.10 2.90
3401 5349 6.672593 AGGTTTGGAGGATAATAAATGCTCA 58.327 36.000 8.48 0.00 38.10 4.26
3402 5350 7.255625 GGAAGGTTTGGAGGATAATAAATGCTC 60.256 40.741 0.00 0.00 36.02 4.26
3403 5351 6.551227 GGAAGGTTTGGAGGATAATAAATGCT 59.449 38.462 0.00 0.00 0.00 3.79
3404 5352 6.323739 TGGAAGGTTTGGAGGATAATAAATGC 59.676 38.462 0.00 0.00 0.00 3.56
3405 5353 7.896383 TGGAAGGTTTGGAGGATAATAAATG 57.104 36.000 0.00 0.00 0.00 2.32
3406 5354 9.506042 AATTGGAAGGTTTGGAGGATAATAAAT 57.494 29.630 0.00 0.00 0.00 1.40
3407 5355 8.909423 AATTGGAAGGTTTGGAGGATAATAAA 57.091 30.769 0.00 0.00 0.00 1.40
3408 5356 8.119246 TGAATTGGAAGGTTTGGAGGATAATAA 58.881 33.333 0.00 0.00 0.00 1.40
3409 5357 7.647827 TGAATTGGAAGGTTTGGAGGATAATA 58.352 34.615 0.00 0.00 0.00 0.98
3410 5358 6.502138 TGAATTGGAAGGTTTGGAGGATAAT 58.498 36.000 0.00 0.00 0.00 1.28
3411 5359 5.898120 TGAATTGGAAGGTTTGGAGGATAA 58.102 37.500 0.00 0.00 0.00 1.75
3412 5360 5.252863 TCTGAATTGGAAGGTTTGGAGGATA 59.747 40.000 0.00 0.00 0.00 2.59
3413 5361 4.044571 TCTGAATTGGAAGGTTTGGAGGAT 59.955 41.667 0.00 0.00 0.00 3.24
3414 5362 3.397618 TCTGAATTGGAAGGTTTGGAGGA 59.602 43.478 0.00 0.00 0.00 3.71
3415 5363 3.766545 TCTGAATTGGAAGGTTTGGAGG 58.233 45.455 0.00 0.00 0.00 4.30
3416 5364 4.829492 AGTTCTGAATTGGAAGGTTTGGAG 59.171 41.667 0.00 0.00 0.00 3.86
3417 5365 4.803452 AGTTCTGAATTGGAAGGTTTGGA 58.197 39.130 0.00 0.00 0.00 3.53
3418 5366 4.320494 CGAGTTCTGAATTGGAAGGTTTGG 60.320 45.833 0.00 0.00 0.00 3.28
3419 5367 4.787598 CGAGTTCTGAATTGGAAGGTTTG 58.212 43.478 0.00 0.00 0.00 2.93
3420 5368 3.253432 GCGAGTTCTGAATTGGAAGGTTT 59.747 43.478 0.00 0.00 0.00 3.27
3421 5369 2.814336 GCGAGTTCTGAATTGGAAGGTT 59.186 45.455 0.00 0.00 0.00 3.50
3422 5370 2.224523 TGCGAGTTCTGAATTGGAAGGT 60.225 45.455 0.00 0.00 0.00 3.50
3423 5371 2.426522 TGCGAGTTCTGAATTGGAAGG 58.573 47.619 0.00 0.00 0.00 3.46
3424 5372 3.438087 ACATGCGAGTTCTGAATTGGAAG 59.562 43.478 0.00 0.00 0.00 3.46
3425 5373 3.189080 CACATGCGAGTTCTGAATTGGAA 59.811 43.478 0.00 0.00 0.00 3.53
3426 5374 2.743664 CACATGCGAGTTCTGAATTGGA 59.256 45.455 0.00 0.00 0.00 3.53
3427 5375 2.485426 ACACATGCGAGTTCTGAATTGG 59.515 45.455 0.00 0.00 0.00 3.16
3428 5376 3.818961 ACACATGCGAGTTCTGAATTG 57.181 42.857 0.00 0.00 0.00 2.32
3429 5377 5.940192 TTAACACATGCGAGTTCTGAATT 57.060 34.783 0.00 0.00 0.00 2.17
3430 5378 5.106555 CCTTTAACACATGCGAGTTCTGAAT 60.107 40.000 0.00 0.00 0.00 2.57
3431 5379 4.213270 CCTTTAACACATGCGAGTTCTGAA 59.787 41.667 0.00 0.00 0.00 3.02
3432 5380 3.745975 CCTTTAACACATGCGAGTTCTGA 59.254 43.478 0.00 0.00 0.00 3.27
3433 5381 3.745975 TCCTTTAACACATGCGAGTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
3434 5382 3.997021 CTCCTTTAACACATGCGAGTTCT 59.003 43.478 0.00 0.00 0.00 3.01
3435 5383 3.994392 TCTCCTTTAACACATGCGAGTTC 59.006 43.478 0.00 0.00 0.00 3.01
3436 5384 3.997021 CTCTCCTTTAACACATGCGAGTT 59.003 43.478 0.00 0.00 0.00 3.01
3437 5385 3.589988 CTCTCCTTTAACACATGCGAGT 58.410 45.455 0.00 0.00 0.00 4.18
3438 5386 2.932614 CCTCTCCTTTAACACATGCGAG 59.067 50.000 0.00 0.00 0.00 5.03
3439 5387 2.565391 TCCTCTCCTTTAACACATGCGA 59.435 45.455 0.00 0.00 0.00 5.10
3440 5388 2.932614 CTCCTCTCCTTTAACACATGCG 59.067 50.000 0.00 0.00 0.00 4.73
3441 5389 3.944087 ACTCCTCTCCTTTAACACATGC 58.056 45.455 0.00 0.00 0.00 4.06
3442 5390 7.979444 TTTAACTCCTCTCCTTTAACACATG 57.021 36.000 0.00 0.00 0.00 3.21
3444 5392 9.720769 CTTATTTAACTCCTCTCCTTTAACACA 57.279 33.333 0.00 0.00 0.00 3.72
3445 5393 9.163899 CCTTATTTAACTCCTCTCCTTTAACAC 57.836 37.037 0.00 0.00 0.00 3.32
3446 5394 9.108111 TCCTTATTTAACTCCTCTCCTTTAACA 57.892 33.333 0.00 0.00 0.00 2.41
3447 5395 9.955102 TTCCTTATTTAACTCCTCTCCTTTAAC 57.045 33.333 0.00 0.00 0.00 2.01
3450 5398 8.891501 TCTTTCCTTATTTAACTCCTCTCCTTT 58.108 33.333 0.00 0.00 0.00 3.11
3451 5399 8.450780 TCTTTCCTTATTTAACTCCTCTCCTT 57.549 34.615 0.00 0.00 0.00 3.36
3452 5400 7.901861 TCTCTTTCCTTATTTAACTCCTCTCCT 59.098 37.037 0.00 0.00 0.00 3.69
3453 5401 8.080363 TCTCTTTCCTTATTTAACTCCTCTCC 57.920 38.462 0.00 0.00 0.00 3.71
3454 5402 8.201464 CCTCTCTTTCCTTATTTAACTCCTCTC 58.799 40.741 0.00 0.00 0.00 3.20
3455 5403 7.901861 TCCTCTCTTTCCTTATTTAACTCCTCT 59.098 37.037 0.00 0.00 0.00 3.69
3456 5404 7.982919 GTCCTCTCTTTCCTTATTTAACTCCTC 59.017 40.741 0.00 0.00 0.00 3.71
3457 5405 7.680739 AGTCCTCTCTTTCCTTATTTAACTCCT 59.319 37.037 0.00 0.00 0.00 3.69
3458 5406 7.853299 AGTCCTCTCTTTCCTTATTTAACTCC 58.147 38.462 0.00 0.00 0.00 3.85
3464 5412 9.674068 GTGAATTAGTCCTCTCTTTCCTTATTT 57.326 33.333 0.00 0.00 0.00 1.40
3465 5413 8.826765 TGTGAATTAGTCCTCTCTTTCCTTATT 58.173 33.333 0.00 0.00 0.00 1.40
3466 5414 8.380742 TGTGAATTAGTCCTCTCTTTCCTTAT 57.619 34.615 0.00 0.00 0.00 1.73
3467 5415 7.792364 TGTGAATTAGTCCTCTCTTTCCTTA 57.208 36.000 0.00 0.00 0.00 2.69
3468 5416 6.688073 TGTGAATTAGTCCTCTCTTTCCTT 57.312 37.500 0.00 0.00 0.00 3.36
3469 5417 6.882768 ATGTGAATTAGTCCTCTCTTTCCT 57.117 37.500 0.00 0.00 0.00 3.36
3470 5418 7.929941 AAATGTGAATTAGTCCTCTCTTTCC 57.070 36.000 0.00 0.00 0.00 3.13
3475 5423 9.535878 CCTACTAAAATGTGAATTAGTCCTCTC 57.464 37.037 1.78 0.00 40.53 3.20
3476 5424 9.268282 TCCTACTAAAATGTGAATTAGTCCTCT 57.732 33.333 1.78 0.00 40.53 3.69
3484 5432 8.960591 CAGTGGAATCCTACTAAAATGTGAATT 58.039 33.333 0.00 0.00 0.00 2.17
3485 5433 8.328758 TCAGTGGAATCCTACTAAAATGTGAAT 58.671 33.333 0.00 0.00 0.00 2.57
3486 5434 7.606456 GTCAGTGGAATCCTACTAAAATGTGAA 59.394 37.037 0.00 0.00 0.00 3.18
3487 5435 7.038302 AGTCAGTGGAATCCTACTAAAATGTGA 60.038 37.037 0.00 0.00 0.00 3.58
3488 5436 7.106239 AGTCAGTGGAATCCTACTAAAATGTG 58.894 38.462 0.00 0.00 0.00 3.21
3489 5437 7.259088 AGTCAGTGGAATCCTACTAAAATGT 57.741 36.000 0.00 0.00 0.00 2.71
3490 5438 9.667107 TTTAGTCAGTGGAATCCTACTAAAATG 57.333 33.333 18.32 3.00 36.81 2.32
3525 5473 7.156000 AGAAAGGCTAAAACTAGTCTTGAGAC 58.844 38.462 0.00 2.93 40.75 3.36
3526 5474 7.304497 AGAAAGGCTAAAACTAGTCTTGAGA 57.696 36.000 0.00 0.00 40.75 3.27
3527 5475 7.971183 AAGAAAGGCTAAAACTAGTCTTGAG 57.029 36.000 0.00 0.00 40.75 3.02
3528 5476 9.490379 CTAAAGAAAGGCTAAAACTAGTCTTGA 57.510 33.333 0.00 0.00 40.75 3.02
3529 5477 9.274206 ACTAAAGAAAGGCTAAAACTAGTCTTG 57.726 33.333 0.00 0.00 40.75 3.02
3530 5478 9.491675 GACTAAAGAAAGGCTAAAACTAGTCTT 57.508 33.333 14.15 0.00 43.18 3.01
3531 5479 8.648693 TGACTAAAGAAAGGCTAAAACTAGTCT 58.351 33.333 18.73 0.00 32.61 3.24
3532 5480 8.828688 TGACTAAAGAAAGGCTAAAACTAGTC 57.171 34.615 14.38 14.38 0.00 2.59
3533 5481 9.623000 TTTGACTAAAGAAAGGCTAAAACTAGT 57.377 29.630 0.00 0.00 0.00 2.57
3535 5483 9.841295 TCTTTGACTAAAGAAAGGCTAAAACTA 57.159 29.630 0.32 0.00 46.87 2.24
3536 5484 8.747538 TCTTTGACTAAAGAAAGGCTAAAACT 57.252 30.769 0.32 0.00 46.87 2.66
3552 5500 8.730680 GGCTAAAGTTTCAATCATCTTTGACTA 58.269 33.333 0.00 0.00 35.42 2.59
3553 5501 7.449704 AGGCTAAAGTTTCAATCATCTTTGACT 59.550 33.333 0.00 0.00 35.42 3.41
3554 5502 7.597386 AGGCTAAAGTTTCAATCATCTTTGAC 58.403 34.615 0.00 0.00 35.42 3.18
3555 5503 7.667219 AGAGGCTAAAGTTTCAATCATCTTTGA 59.333 33.333 0.00 0.00 36.00 2.69
3556 5504 7.824672 AGAGGCTAAAGTTTCAATCATCTTTG 58.175 34.615 0.00 0.00 33.22 2.77
3557 5505 9.520515 TTAGAGGCTAAAGTTTCAATCATCTTT 57.479 29.630 0.00 0.00 34.98 2.52
3558 5506 9.520515 TTTAGAGGCTAAAGTTTCAATCATCTT 57.479 29.630 0.00 0.00 0.00 2.40
3559 5507 9.520515 TTTTAGAGGCTAAAGTTTCAATCATCT 57.479 29.630 0.00 0.00 0.00 2.90
3566 5514 9.227777 GGACTATTTTTAGAGGCTAAAGTTTCA 57.772 33.333 0.00 0.00 0.00 2.69
3567 5515 8.675504 GGGACTATTTTTAGAGGCTAAAGTTTC 58.324 37.037 0.00 0.00 0.00 2.78
3568 5516 8.391699 AGGGACTATTTTTAGAGGCTAAAGTTT 58.608 33.333 0.00 0.00 36.02 2.66
3569 5517 7.929959 AGGGACTATTTTTAGAGGCTAAAGTT 58.070 34.615 0.00 0.00 36.02 2.66
3570 5518 7.512117 AGGGACTATTTTTAGAGGCTAAAGT 57.488 36.000 0.00 0.00 36.02 2.66
3571 5519 8.047310 TCAAGGGACTATTTTTAGAGGCTAAAG 58.953 37.037 0.00 0.00 38.49 1.85
3572 5520 7.924541 TCAAGGGACTATTTTTAGAGGCTAAA 58.075 34.615 0.00 0.00 38.49 1.85
3573 5521 7.504926 TCAAGGGACTATTTTTAGAGGCTAA 57.495 36.000 0.00 0.00 38.49 3.09
3574 5522 7.504926 TTCAAGGGACTATTTTTAGAGGCTA 57.495 36.000 0.00 0.00 38.49 3.93
3575 5523 6.388619 TTCAAGGGACTATTTTTAGAGGCT 57.611 37.500 0.00 0.00 38.49 4.58
3576 5524 7.773690 TGTATTCAAGGGACTATTTTTAGAGGC 59.226 37.037 0.00 0.00 38.49 4.70
3577 5525 9.681062 TTGTATTCAAGGGACTATTTTTAGAGG 57.319 33.333 0.00 0.00 38.49 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.