Multiple sequence alignment - TraesCS1B01G076000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G076000 chr1B 100.000 3158 0 0 1 3158 58751977 58755134 0.000000e+00 5832.0
1 TraesCS1B01G076000 chr1B 82.727 1210 184 15 966 2160 58540134 58541333 0.000000e+00 1053.0
2 TraesCS1B01G076000 chr1B 80.470 1234 207 19 967 2177 58031489 58032711 0.000000e+00 913.0
3 TraesCS1B01G076000 chr1B 79.676 1235 224 13 965 2177 57782667 57783896 0.000000e+00 865.0
4 TraesCS1B01G076000 chr1B 88.187 364 34 4 1133 1495 58081873 58082228 2.910000e-115 425.0
5 TraesCS1B01G076000 chr1B 82.773 476 56 17 1999 2454 58032829 58033298 4.910000e-108 401.0
6 TraesCS1B01G076000 chr1B 82.143 476 59 17 1999 2454 58108595 58109064 4.940000e-103 385.0
7 TraesCS1B01G076000 chr1B 95.385 130 5 1 3029 3158 550923040 550923168 4.130000e-49 206.0
8 TraesCS1B01G076000 chr1B 88.889 90 10 0 1999 2088 58082506 58082595 9.260000e-21 111.0
9 TraesCS1B01G076000 chr1D 94.306 1844 78 11 1038 2864 39651486 39653319 0.000000e+00 2798.0
10 TraesCS1B01G076000 chr1D 90.602 830 52 14 243 1049 39648557 39649383 0.000000e+00 1077.0
11 TraesCS1B01G076000 chr1D 82.155 1216 188 17 966 2160 38655228 38656435 0.000000e+00 1016.0
12 TraesCS1B01G076000 chr1D 80.081 1235 220 12 965 2177 38294093 38295323 0.000000e+00 894.0
13 TraesCS1B01G076000 chr1D 81.545 764 126 5 965 1716 38250333 38251093 1.610000e-172 616.0
14 TraesCS1B01G076000 chr1D 91.503 153 13 0 1 153 39849992 39849840 8.870000e-51 211.0
15 TraesCS1B01G076000 chr1D 89.516 124 10 1 2905 3028 39653831 39653951 1.520000e-33 154.0
16 TraesCS1B01G076000 chr1D 97.368 38 1 0 2486 2523 38295630 38295667 7.310000e-07 65.8
17 TraesCS1B01G076000 chr1A 80.906 1236 208 13 966 2177 37466632 37467863 0.000000e+00 950.0
18 TraesCS1B01G076000 chr1A 84.319 778 104 13 966 1732 38359231 38360001 0.000000e+00 745.0
19 TraesCS1B01G076000 chr2D 96.923 130 4 0 3029 3158 430224878 430225007 5.300000e-53 219.0
20 TraesCS1B01G076000 chr7D 94.488 127 7 0 3032 3158 126503702 126503828 2.480000e-46 196.0
21 TraesCS1B01G076000 chr4A 93.750 128 8 0 3031 3158 697990144 697990017 3.210000e-45 193.0
22 TraesCS1B01G076000 chr3B 94.444 126 6 1 3033 3158 667679927 667679803 3.210000e-45 193.0
23 TraesCS1B01G076000 chr6B 93.750 128 5 3 3032 3158 508161470 508161595 4.160000e-44 189.0
24 TraesCS1B01G076000 chr7A 92.913 127 9 0 3032 3158 735449068 735449194 5.380000e-43 185.0
25 TraesCS1B01G076000 chr7A 92.063 126 9 1 3033 3158 44858802 44858678 3.240000e-40 176.0
26 TraesCS1B01G076000 chr4D 91.538 130 11 0 3029 3158 35348637 35348766 2.500000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G076000 chr1B 58751977 58755134 3157 False 5832.0 5832 100.000000 1 3158 1 chr1B.!!$F4 3157
1 TraesCS1B01G076000 chr1B 58540134 58541333 1199 False 1053.0 1053 82.727000 966 2160 1 chr1B.!!$F3 1194
2 TraesCS1B01G076000 chr1B 57782667 57783896 1229 False 865.0 865 79.676000 965 2177 1 chr1B.!!$F1 1212
3 TraesCS1B01G076000 chr1B 58031489 58033298 1809 False 657.0 913 81.621500 967 2454 2 chr1B.!!$F6 1487
4 TraesCS1B01G076000 chr1B 58081873 58082595 722 False 268.0 425 88.538000 1133 2088 2 chr1B.!!$F7 955
5 TraesCS1B01G076000 chr1D 39648557 39653951 5394 False 1343.0 2798 91.474667 243 3028 3 chr1D.!!$F4 2785
6 TraesCS1B01G076000 chr1D 38655228 38656435 1207 False 1016.0 1016 82.155000 966 2160 1 chr1D.!!$F2 1194
7 TraesCS1B01G076000 chr1D 38250333 38251093 760 False 616.0 616 81.545000 965 1716 1 chr1D.!!$F1 751
8 TraesCS1B01G076000 chr1D 38294093 38295667 1574 False 479.9 894 88.724500 965 2523 2 chr1D.!!$F3 1558
9 TraesCS1B01G076000 chr1A 37466632 37467863 1231 False 950.0 950 80.906000 966 2177 1 chr1A.!!$F1 1211
10 TraesCS1B01G076000 chr1A 38359231 38360001 770 False 745.0 745 84.319000 966 1732 1 chr1A.!!$F2 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.036388 CTAAAGCGGCTTCCAGGTGA 60.036 55.0 16.7 0.0 0.00 4.02 F
212 213 0.321298 TAAAGCGGCTTCCAGGTGAC 60.321 55.0 16.7 0.0 0.00 3.67 F
216 217 0.321298 GCGGCTTCCAGGTGACTTAA 60.321 55.0 0.0 0.0 40.21 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 3791 0.930310 CCGCATACAACACTCCATCG 59.070 55.000 0.0 0.0 0.00 3.84 R
1946 4129 2.025793 TCACAGTTCCAAAACCAGTGGA 60.026 45.455 18.4 0.0 43.57 4.02 R
2164 4347 4.002906 TGGCATACAGAAAAGAAGACGT 57.997 40.909 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.685435 GGGTGGTGCAATGGTGAG 58.315 61.111 0.00 0.00 0.00 3.51
18 19 1.978617 GGGTGGTGCAATGGTGAGG 60.979 63.158 0.00 0.00 0.00 3.86
19 20 2.639327 GGTGGTGCAATGGTGAGGC 61.639 63.158 0.00 0.00 0.00 4.70
20 21 2.672651 TGGTGCAATGGTGAGGCG 60.673 61.111 0.00 0.00 0.00 5.52
21 22 3.443045 GGTGCAATGGTGAGGCGG 61.443 66.667 0.00 0.00 0.00 6.13
22 23 4.120331 GTGCAATGGTGAGGCGGC 62.120 66.667 0.00 0.00 0.00 6.53
23 24 4.657408 TGCAATGGTGAGGCGGCA 62.657 61.111 13.08 0.00 0.00 5.69
24 25 4.120331 GCAATGGTGAGGCGGCAC 62.120 66.667 13.08 5.35 38.05 5.01
30 31 2.743928 GTGAGGCGGCACCAAGAG 60.744 66.667 13.08 0.00 43.14 2.85
31 32 4.020617 TGAGGCGGCACCAAGAGG 62.021 66.667 13.08 0.00 43.14 3.69
32 33 3.706373 GAGGCGGCACCAAGAGGA 61.706 66.667 13.08 0.00 43.14 3.71
33 34 3.672295 GAGGCGGCACCAAGAGGAG 62.672 68.421 13.08 0.00 43.14 3.69
34 35 3.706373 GGCGGCACCAAGAGGAGA 61.706 66.667 3.07 0.00 38.86 3.71
35 36 2.586792 GCGGCACCAAGAGGAGAT 59.413 61.111 0.00 0.00 38.69 2.75
36 37 1.522580 GCGGCACCAAGAGGAGATC 60.523 63.158 0.00 0.00 38.69 2.75
37 38 1.965754 GCGGCACCAAGAGGAGATCT 61.966 60.000 0.00 0.00 41.27 2.75
38 39 0.103937 CGGCACCAAGAGGAGATCTC 59.896 60.000 14.75 14.75 37.23 2.75
39 40 0.103937 GGCACCAAGAGGAGATCTCG 59.896 60.000 16.46 4.19 46.82 4.04
40 41 0.820871 GCACCAAGAGGAGATCTCGT 59.179 55.000 17.54 17.54 46.82 4.18
41 42 1.470632 GCACCAAGAGGAGATCTCGTG 60.471 57.143 22.06 19.16 46.75 4.35
42 43 0.820871 ACCAAGAGGAGATCTCGTGC 59.179 55.000 22.06 13.14 46.15 5.34
43 44 0.103937 CCAAGAGGAGATCTCGTGCC 59.896 60.000 22.06 9.08 46.15 5.01
44 45 0.820226 CAAGAGGAGATCTCGTGCCA 59.180 55.000 22.06 0.00 46.82 4.92
45 46 1.110442 AAGAGGAGATCTCGTGCCAG 58.890 55.000 22.06 0.00 46.82 4.85
46 47 0.257328 AGAGGAGATCTCGTGCCAGA 59.743 55.000 22.06 0.00 46.82 3.86
47 48 0.383949 GAGGAGATCTCGTGCCAGAC 59.616 60.000 22.06 3.44 32.18 3.51
48 49 0.323816 AGGAGATCTCGTGCCAGACA 60.324 55.000 16.87 0.00 0.00 3.41
49 50 0.532573 GGAGATCTCGTGCCAGACAA 59.467 55.000 16.46 0.00 0.00 3.18
50 51 1.137872 GGAGATCTCGTGCCAGACAAT 59.862 52.381 16.46 0.00 0.00 2.71
51 52 2.200067 GAGATCTCGTGCCAGACAATG 58.800 52.381 7.04 0.00 0.00 2.82
52 53 0.654683 GATCTCGTGCCAGACAATGC 59.345 55.000 0.00 0.00 0.00 3.56
53 54 1.086067 ATCTCGTGCCAGACAATGCG 61.086 55.000 0.00 0.00 0.00 4.73
54 55 1.737735 CTCGTGCCAGACAATGCGA 60.738 57.895 0.00 0.00 0.00 5.10
55 56 1.690283 CTCGTGCCAGACAATGCGAG 61.690 60.000 0.00 0.00 39.50 5.03
56 57 1.737735 CGTGCCAGACAATGCGAGA 60.738 57.895 0.00 0.00 0.00 4.04
57 58 1.690283 CGTGCCAGACAATGCGAGAG 61.690 60.000 0.00 0.00 0.00 3.20
58 59 1.078918 TGCCAGACAATGCGAGAGG 60.079 57.895 0.00 0.00 0.00 3.69
59 60 1.078848 GCCAGACAATGCGAGAGGT 60.079 57.895 0.00 0.00 0.00 3.85
60 61 1.364626 GCCAGACAATGCGAGAGGTG 61.365 60.000 0.00 0.00 0.00 4.00
61 62 0.247460 CCAGACAATGCGAGAGGTGA 59.753 55.000 0.00 0.00 0.00 4.02
62 63 1.354040 CAGACAATGCGAGAGGTGAC 58.646 55.000 0.00 0.00 0.00 3.67
63 64 0.969149 AGACAATGCGAGAGGTGACA 59.031 50.000 0.00 0.00 0.00 3.58
64 65 1.071605 GACAATGCGAGAGGTGACAC 58.928 55.000 0.00 0.00 0.00 3.67
65 66 0.392706 ACAATGCGAGAGGTGACACA 59.607 50.000 8.08 0.00 0.00 3.72
66 67 1.002430 ACAATGCGAGAGGTGACACAT 59.998 47.619 8.08 0.00 0.00 3.21
67 68 1.662629 CAATGCGAGAGGTGACACATC 59.337 52.381 12.25 12.25 0.00 3.06
68 69 0.176680 ATGCGAGAGGTGACACATCC 59.823 55.000 16.22 7.50 27.29 3.51
69 70 1.184970 TGCGAGAGGTGACACATCCA 61.185 55.000 16.22 5.22 27.29 3.41
70 71 0.459237 GCGAGAGGTGACACATCCAG 60.459 60.000 16.22 11.56 27.29 3.86
71 72 1.177401 CGAGAGGTGACACATCCAGA 58.823 55.000 16.22 0.00 27.29 3.86
72 73 1.133982 CGAGAGGTGACACATCCAGAG 59.866 57.143 16.22 2.57 27.29 3.35
73 74 2.451490 GAGAGGTGACACATCCAGAGA 58.549 52.381 16.22 0.00 27.29 3.10
74 75 2.426738 GAGAGGTGACACATCCAGAGAG 59.573 54.545 16.22 0.00 27.29 3.20
75 76 1.480137 GAGGTGACACATCCAGAGAGG 59.520 57.143 9.08 0.00 39.47 3.69
84 85 1.000771 TCCAGAGAGGAGGTGGTCG 60.001 63.158 0.00 0.00 43.07 4.79
85 86 1.000771 CCAGAGAGGAGGTGGTCGA 60.001 63.158 0.00 0.00 41.22 4.20
86 87 0.396417 CCAGAGAGGAGGTGGTCGAT 60.396 60.000 0.00 0.00 41.22 3.59
87 88 0.743688 CAGAGAGGAGGTGGTCGATG 59.256 60.000 0.00 0.00 0.00 3.84
88 89 0.396417 AGAGAGGAGGTGGTCGATGG 60.396 60.000 0.00 0.00 0.00 3.51
89 90 0.684805 GAGAGGAGGTGGTCGATGGT 60.685 60.000 0.00 0.00 0.00 3.55
90 91 0.684805 AGAGGAGGTGGTCGATGGTC 60.685 60.000 0.00 0.00 0.00 4.02
91 92 0.684805 GAGGAGGTGGTCGATGGTCT 60.685 60.000 0.00 0.00 0.00 3.85
92 93 0.684805 AGGAGGTGGTCGATGGTCTC 60.685 60.000 0.00 0.00 0.00 3.36
102 103 1.914634 CGATGGTCTCGTTCTCTTGG 58.085 55.000 0.00 0.00 42.56 3.61
103 104 1.202582 CGATGGTCTCGTTCTCTTGGT 59.797 52.381 0.00 0.00 42.56 3.67
104 105 2.732597 CGATGGTCTCGTTCTCTTGGTC 60.733 54.545 0.00 0.00 42.56 4.02
105 106 1.699730 TGGTCTCGTTCTCTTGGTCA 58.300 50.000 0.00 0.00 0.00 4.02
106 107 2.036387 TGGTCTCGTTCTCTTGGTCAA 58.964 47.619 0.00 0.00 0.00 3.18
107 108 2.432874 TGGTCTCGTTCTCTTGGTCAAA 59.567 45.455 0.00 0.00 0.00 2.69
108 109 3.118555 TGGTCTCGTTCTCTTGGTCAAAA 60.119 43.478 0.00 0.00 0.00 2.44
109 110 3.875134 GGTCTCGTTCTCTTGGTCAAAAA 59.125 43.478 0.00 0.00 0.00 1.94
110 111 4.024809 GGTCTCGTTCTCTTGGTCAAAAAG 60.025 45.833 0.00 0.00 0.00 2.27
111 112 4.024809 GTCTCGTTCTCTTGGTCAAAAAGG 60.025 45.833 0.00 0.00 0.00 3.11
112 113 3.211045 TCGTTCTCTTGGTCAAAAAGGG 58.789 45.455 0.00 0.00 0.00 3.95
113 114 3.118186 TCGTTCTCTTGGTCAAAAAGGGA 60.118 43.478 0.00 0.00 32.22 4.20
114 115 3.251004 CGTTCTCTTGGTCAAAAAGGGAG 59.749 47.826 0.00 0.00 35.60 4.30
115 116 4.461198 GTTCTCTTGGTCAAAAAGGGAGA 58.539 43.478 0.00 0.00 35.60 3.71
116 117 4.357918 TCTCTTGGTCAAAAAGGGAGAG 57.642 45.455 0.00 0.00 30.57 3.20
117 118 3.716872 TCTCTTGGTCAAAAAGGGAGAGT 59.283 43.478 0.00 0.00 30.57 3.24
118 119 3.817647 CTCTTGGTCAAAAAGGGAGAGTG 59.182 47.826 0.00 0.00 0.00 3.51
119 120 2.656947 TGGTCAAAAAGGGAGAGTGG 57.343 50.000 0.00 0.00 0.00 4.00
120 121 2.131854 TGGTCAAAAAGGGAGAGTGGA 58.868 47.619 0.00 0.00 0.00 4.02
121 122 2.106511 TGGTCAAAAAGGGAGAGTGGAG 59.893 50.000 0.00 0.00 0.00 3.86
122 123 2.372172 GGTCAAAAAGGGAGAGTGGAGA 59.628 50.000 0.00 0.00 0.00 3.71
123 124 3.181443 GGTCAAAAAGGGAGAGTGGAGAA 60.181 47.826 0.00 0.00 0.00 2.87
124 125 4.068599 GTCAAAAAGGGAGAGTGGAGAAG 58.931 47.826 0.00 0.00 0.00 2.85
125 126 3.716872 TCAAAAAGGGAGAGTGGAGAAGT 59.283 43.478 0.00 0.00 0.00 3.01
126 127 3.778954 AAAAGGGAGAGTGGAGAAGTG 57.221 47.619 0.00 0.00 0.00 3.16
127 128 1.650528 AAGGGAGAGTGGAGAAGTGG 58.349 55.000 0.00 0.00 0.00 4.00
128 129 0.787084 AGGGAGAGTGGAGAAGTGGA 59.213 55.000 0.00 0.00 0.00 4.02
129 130 1.190643 GGGAGAGTGGAGAAGTGGAG 58.809 60.000 0.00 0.00 0.00 3.86
130 131 1.190643 GGAGAGTGGAGAAGTGGAGG 58.809 60.000 0.00 0.00 0.00 4.30
131 132 1.190643 GAGAGTGGAGAAGTGGAGGG 58.809 60.000 0.00 0.00 0.00 4.30
132 133 0.252467 AGAGTGGAGAAGTGGAGGGG 60.252 60.000 0.00 0.00 0.00 4.79
133 134 0.252284 GAGTGGAGAAGTGGAGGGGA 60.252 60.000 0.00 0.00 0.00 4.81
134 135 0.252467 AGTGGAGAAGTGGAGGGGAG 60.252 60.000 0.00 0.00 0.00 4.30
135 136 1.613630 TGGAGAAGTGGAGGGGAGC 60.614 63.158 0.00 0.00 0.00 4.70
136 137 2.371259 GGAGAAGTGGAGGGGAGCC 61.371 68.421 0.00 0.00 0.00 4.70
137 138 2.685380 AGAAGTGGAGGGGAGCCG 60.685 66.667 0.00 0.00 0.00 5.52
138 139 3.787001 GAAGTGGAGGGGAGCCGG 61.787 72.222 0.00 0.00 0.00 6.13
145 146 4.760220 AGGGGAGCCGGGGAACAT 62.760 66.667 2.18 0.00 0.00 2.71
146 147 4.506255 GGGGAGCCGGGGAACATG 62.506 72.222 2.18 0.00 0.00 3.21
147 148 4.506255 GGGAGCCGGGGAACATGG 62.506 72.222 2.18 0.00 0.00 3.66
153 154 4.096003 CGGGGAACATGGCGGACT 62.096 66.667 0.00 0.00 0.00 3.85
154 155 2.124695 GGGGAACATGGCGGACTC 60.125 66.667 0.00 0.00 0.00 3.36
155 156 2.670148 GGGGAACATGGCGGACTCT 61.670 63.158 0.00 0.00 0.00 3.24
156 157 1.153349 GGGAACATGGCGGACTCTC 60.153 63.158 0.00 0.00 0.00 3.20
157 158 1.617947 GGGAACATGGCGGACTCTCT 61.618 60.000 0.00 0.00 0.00 3.10
158 159 0.179097 GGAACATGGCGGACTCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
159 160 0.526524 GAACATGGCGGACTCTCTCG 60.527 60.000 0.00 0.00 0.00 4.04
166 167 3.171705 CGGACTCTCTCGCTTATGC 57.828 57.895 0.00 0.00 0.00 3.14
167 168 0.382158 CGGACTCTCTCGCTTATGCA 59.618 55.000 1.16 0.00 39.64 3.96
168 169 1.846541 GGACTCTCTCGCTTATGCAC 58.153 55.000 0.00 0.00 39.64 4.57
169 170 1.471964 GACTCTCTCGCTTATGCACG 58.528 55.000 0.00 0.00 39.64 5.34
170 171 0.526524 ACTCTCTCGCTTATGCACGC 60.527 55.000 0.00 0.00 39.64 5.34
171 172 1.211818 CTCTCTCGCTTATGCACGCC 61.212 60.000 0.00 0.00 39.64 5.68
172 173 2.202878 TCTCGCTTATGCACGCCC 60.203 61.111 0.00 0.00 39.64 6.13
173 174 2.511373 CTCGCTTATGCACGCCCA 60.511 61.111 0.00 0.00 39.64 5.36
174 175 2.046796 TCGCTTATGCACGCCCAA 60.047 55.556 0.00 0.00 39.64 4.12
175 176 2.100216 CGCTTATGCACGCCCAAC 59.900 61.111 0.00 0.00 39.64 3.77
176 177 2.685829 CGCTTATGCACGCCCAACA 61.686 57.895 0.00 0.00 39.64 3.33
177 178 1.809207 GCTTATGCACGCCCAACAT 59.191 52.632 0.00 0.00 39.41 2.71
178 179 0.248621 GCTTATGCACGCCCAACATC 60.249 55.000 0.00 0.00 39.41 3.06
179 180 1.093972 CTTATGCACGCCCAACATCA 58.906 50.000 0.00 0.00 0.00 3.07
180 181 1.472082 CTTATGCACGCCCAACATCAA 59.528 47.619 0.00 0.00 0.00 2.57
181 182 1.761449 TATGCACGCCCAACATCAAT 58.239 45.000 0.00 0.00 0.00 2.57
182 183 1.761449 ATGCACGCCCAACATCAATA 58.239 45.000 0.00 0.00 0.00 1.90
183 184 0.808125 TGCACGCCCAACATCAATAC 59.192 50.000 0.00 0.00 0.00 1.89
184 185 0.100503 GCACGCCCAACATCAATACC 59.899 55.000 0.00 0.00 0.00 2.73
185 186 1.750193 CACGCCCAACATCAATACCT 58.250 50.000 0.00 0.00 0.00 3.08
186 187 1.401552 CACGCCCAACATCAATACCTG 59.598 52.381 0.00 0.00 0.00 4.00
187 188 1.280710 ACGCCCAACATCAATACCTGA 59.719 47.619 0.00 0.00 38.81 3.86
188 189 2.290641 ACGCCCAACATCAATACCTGAA 60.291 45.455 0.00 0.00 37.67 3.02
189 190 2.355756 CGCCCAACATCAATACCTGAAG 59.644 50.000 0.00 0.00 37.67 3.02
190 191 2.099756 GCCCAACATCAATACCTGAAGC 59.900 50.000 0.00 0.00 37.67 3.86
191 192 3.355378 CCCAACATCAATACCTGAAGCA 58.645 45.455 0.00 0.00 37.67 3.91
192 193 3.129287 CCCAACATCAATACCTGAAGCAC 59.871 47.826 0.00 0.00 37.67 4.40
193 194 4.012374 CCAACATCAATACCTGAAGCACT 58.988 43.478 0.00 0.00 37.67 4.40
194 195 5.185454 CCAACATCAATACCTGAAGCACTA 58.815 41.667 0.00 0.00 37.67 2.74
195 196 5.647658 CCAACATCAATACCTGAAGCACTAA 59.352 40.000 0.00 0.00 37.67 2.24
196 197 6.150976 CCAACATCAATACCTGAAGCACTAAA 59.849 38.462 0.00 0.00 37.67 1.85
197 198 6.992063 ACATCAATACCTGAAGCACTAAAG 57.008 37.500 0.00 0.00 37.67 1.85
198 199 5.355350 ACATCAATACCTGAAGCACTAAAGC 59.645 40.000 0.00 0.00 37.67 3.51
199 200 3.932710 TCAATACCTGAAGCACTAAAGCG 59.067 43.478 0.00 0.00 40.15 4.68
200 201 2.380084 TACCTGAAGCACTAAAGCGG 57.620 50.000 0.00 0.00 40.15 5.52
201 202 0.955919 ACCTGAAGCACTAAAGCGGC 60.956 55.000 0.00 0.00 40.15 6.53
202 203 0.674895 CCTGAAGCACTAAAGCGGCT 60.675 55.000 0.00 0.00 40.14 5.52
205 206 2.556286 AAGCACTAAAGCGGCTTCC 58.444 52.632 16.70 2.81 43.97 3.46
206 207 0.250727 AAGCACTAAAGCGGCTTCCA 60.251 50.000 16.70 6.27 43.97 3.53
207 208 0.674895 AGCACTAAAGCGGCTTCCAG 60.675 55.000 16.70 17.40 40.15 3.86
208 209 1.648467 GCACTAAAGCGGCTTCCAGG 61.648 60.000 16.70 7.76 0.00 4.45
209 210 0.321653 CACTAAAGCGGCTTCCAGGT 60.322 55.000 16.70 9.44 0.00 4.00
210 211 0.321653 ACTAAAGCGGCTTCCAGGTG 60.322 55.000 16.70 5.54 0.00 4.00
211 212 0.036388 CTAAAGCGGCTTCCAGGTGA 60.036 55.000 16.70 0.00 0.00 4.02
212 213 0.321298 TAAAGCGGCTTCCAGGTGAC 60.321 55.000 16.70 0.00 0.00 3.67
213 214 2.056906 AAAGCGGCTTCCAGGTGACT 62.057 55.000 16.70 0.00 46.44 3.41
214 215 2.032681 GCGGCTTCCAGGTGACTT 59.967 61.111 0.00 0.00 40.21 3.01
215 216 1.192146 AGCGGCTTCCAGGTGACTTA 61.192 55.000 0.00 0.00 40.21 2.24
216 217 0.321298 GCGGCTTCCAGGTGACTTAA 60.321 55.000 0.00 0.00 40.21 1.85
217 218 1.880646 GCGGCTTCCAGGTGACTTAAA 60.881 52.381 0.00 0.00 40.21 1.52
218 219 1.804748 CGGCTTCCAGGTGACTTAAAC 59.195 52.381 0.00 0.00 40.21 2.01
219 220 2.160205 GGCTTCCAGGTGACTTAAACC 58.840 52.381 0.00 0.00 40.21 3.27
220 221 2.160205 GCTTCCAGGTGACTTAAACCC 58.840 52.381 0.00 0.00 40.21 4.11
221 222 2.224793 GCTTCCAGGTGACTTAAACCCT 60.225 50.000 0.00 0.00 40.21 4.34
222 223 3.412386 CTTCCAGGTGACTTAAACCCTG 58.588 50.000 0.00 0.00 43.34 4.45
223 224 2.414612 TCCAGGTGACTTAAACCCTGT 58.585 47.619 0.00 0.00 42.39 4.00
224 225 2.105821 TCCAGGTGACTTAAACCCTGTG 59.894 50.000 0.00 0.00 42.39 3.66
225 226 2.158667 CCAGGTGACTTAAACCCTGTGT 60.159 50.000 0.00 0.00 42.39 3.72
226 227 3.551846 CAGGTGACTTAAACCCTGTGTT 58.448 45.455 0.00 0.00 40.21 3.32
227 228 3.951680 CAGGTGACTTAAACCCTGTGTTT 59.048 43.478 0.00 0.00 44.63 2.83
228 229 4.401202 CAGGTGACTTAAACCCTGTGTTTT 59.599 41.667 0.00 0.00 41.29 2.43
229 230 5.591067 CAGGTGACTTAAACCCTGTGTTTTA 59.409 40.000 0.00 0.00 41.29 1.52
230 231 6.264518 CAGGTGACTTAAACCCTGTGTTTTAT 59.735 38.462 0.00 0.00 41.29 1.40
231 232 6.264518 AGGTGACTTAAACCCTGTGTTTTATG 59.735 38.462 0.00 0.00 46.14 1.90
232 233 6.040054 GGTGACTTAAACCCTGTGTTTTATGT 59.960 38.462 0.00 0.00 44.80 2.29
233 234 7.417003 GGTGACTTAAACCCTGTGTTTTATGTT 60.417 37.037 0.00 0.00 44.80 2.71
234 235 7.977293 GTGACTTAAACCCTGTGTTTTATGTTT 59.023 33.333 0.00 0.00 44.80 2.83
235 236 9.186837 TGACTTAAACCCTGTGTTTTATGTTTA 57.813 29.630 0.00 0.00 44.80 2.01
236 237 9.454585 GACTTAAACCCTGTGTTTTATGTTTAC 57.545 33.333 0.00 0.00 44.80 2.01
237 238 9.192642 ACTTAAACCCTGTGTTTTATGTTTACT 57.807 29.630 0.00 0.00 44.80 2.24
240 241 7.891498 AACCCTGTGTTTTATGTTTACTTCT 57.109 32.000 0.00 0.00 31.47 2.85
241 242 8.983702 AACCCTGTGTTTTATGTTTACTTCTA 57.016 30.769 0.00 0.00 31.47 2.10
242 243 9.582648 AACCCTGTGTTTTATGTTTACTTCTAT 57.417 29.630 0.00 0.00 31.47 1.98
378 379 6.183360 CGGAAAAATATTCCTTTGAGCCAGAT 60.183 38.462 5.75 0.00 36.45 2.90
379 380 7.205992 GGAAAAATATTCCTTTGAGCCAGATC 58.794 38.462 0.00 0.00 35.73 2.75
380 381 7.069208 GGAAAAATATTCCTTTGAGCCAGATCT 59.931 37.037 0.00 0.00 35.73 2.75
381 382 6.956202 AAATATTCCTTTGAGCCAGATCTG 57.044 37.500 16.24 16.24 0.00 2.90
399 400 2.506472 GCCAGTAGCCCAGTAGCC 59.494 66.667 0.00 0.00 34.35 3.93
400 401 3.108288 GCCAGTAGCCCAGTAGCCC 62.108 68.421 0.00 0.00 34.35 5.19
401 402 1.689233 CCAGTAGCCCAGTAGCCCA 60.689 63.158 0.00 0.00 0.00 5.36
402 403 1.690219 CCAGTAGCCCAGTAGCCCAG 61.690 65.000 0.00 0.00 0.00 4.45
403 404 0.978146 CAGTAGCCCAGTAGCCCAGT 60.978 60.000 0.00 0.00 0.00 4.00
415 416 1.689582 GCCCAGTAGGTAGCCCAGT 60.690 63.158 0.00 0.00 38.26 4.00
455 456 1.013005 CCTTCTCGCACACAGCTCTG 61.013 60.000 0.00 0.00 42.61 3.35
461 462 1.670590 GCACACAGCTCTGACCTCT 59.329 57.895 3.60 0.00 41.15 3.69
467 502 1.077005 ACAGCTCTGACCTCTTCCTCT 59.923 52.381 3.60 0.00 0.00 3.69
529 567 2.279784 CGGCGAGCCATCTCCTTC 60.280 66.667 15.03 0.00 35.94 3.46
530 568 2.903357 GGCGAGCCATCTCCTTCA 59.097 61.111 9.58 0.00 35.94 3.02
537 575 2.721167 CCATCTCCTTCACCGCCGA 61.721 63.158 0.00 0.00 0.00 5.54
553 591 2.556287 GACGGGAAACAAGCTGCG 59.444 61.111 0.00 0.00 0.00 5.18
555 593 3.357079 CGGGAAACAAGCTGCGCT 61.357 61.111 9.73 0.00 42.56 5.92
569 607 2.179517 CGCTGTGAGTCCTCCGTC 59.820 66.667 0.00 0.00 0.00 4.79
574 612 3.062466 TGAGTCCTCCGTCCTGCG 61.062 66.667 0.00 0.00 40.95 5.18
583 621 2.829003 CGTCCTGCGCCTCCTCTA 60.829 66.667 4.18 0.00 0.00 2.43
614 652 3.812053 TCGTTATTCTCCTACGCTCCTAC 59.188 47.826 0.00 0.00 35.40 3.18
625 663 1.135199 ACGCTCCTACGTATGGTTGTG 60.135 52.381 0.00 7.13 46.19 3.33
678 716 3.041946 TCTGAGCTTATTTCCTCCTCCC 58.958 50.000 0.00 0.00 0.00 4.30
705 743 1.522092 CTCTCCCGCCATGTAGCAA 59.478 57.895 0.00 0.00 0.00 3.91
740 778 0.457851 GCAGATCACTAGACCGCAGT 59.542 55.000 0.00 0.00 0.00 4.40
1050 3204 6.301486 TGCTAGGTTAACCGATGATCTAGTA 58.699 40.000 18.91 9.75 42.08 1.82
1065 3219 9.905713 GATGATCTAGTAGTTGATATCCTCTCT 57.094 37.037 0.00 2.18 0.00 3.10
1128 3282 3.394836 GCCTGGTCCGCCTTCTCT 61.395 66.667 0.00 0.00 35.27 3.10
1272 3426 2.031258 TTCTTTCTGACGTGCCACAA 57.969 45.000 0.00 0.00 0.00 3.33
1314 3468 1.610522 GACTGCTGCAATGGTCTTGTT 59.389 47.619 3.02 0.00 0.00 2.83
1422 3577 2.154462 CCTGACACTCATGTTGGAACC 58.846 52.381 0.00 0.00 39.95 3.62
1617 3791 8.447053 GTTTGTTGGAGATCTCACTTATTTCTC 58.553 37.037 23.85 3.44 33.63 2.87
1675 3849 2.151502 TTTGGTGTTTGGAGCCTTGA 57.848 45.000 0.00 0.00 0.00 3.02
1679 3853 2.031870 GGTGTTTGGAGCCTTGAAGTT 58.968 47.619 0.00 0.00 0.00 2.66
1684 3858 4.237724 GTTTGGAGCCTTGAAGTTAATGC 58.762 43.478 0.00 0.00 0.00 3.56
1946 4129 2.927856 TGGCGATGGTGGTGACCT 60.928 61.111 2.11 0.00 43.58 3.85
2059 4242 4.713553 TCTTTCTTACAACATCAGCACCA 58.286 39.130 0.00 0.00 0.00 4.17
2131 4314 7.564793 TGTCTATGTACCATGCTACTCAAAAT 58.435 34.615 0.11 0.00 0.00 1.82
2164 4347 7.670364 TCAAGAATCTTCTGTGTAGTGAATGA 58.330 34.615 0.00 0.00 37.65 2.57
2187 4370 3.181516 CGTCTTCTTTTCTGTATGCCAGC 60.182 47.826 0.00 0.00 41.25 4.85
2188 4371 3.753272 GTCTTCTTTTCTGTATGCCAGCA 59.247 43.478 0.00 0.00 41.25 4.41
2194 4377 0.909133 TCTGTATGCCAGCAGGACCA 60.909 55.000 0.00 0.00 41.25 4.02
2195 4378 0.035152 CTGTATGCCAGCAGGACCAA 60.035 55.000 0.00 0.00 36.89 3.67
2232 4415 5.381757 TGCTGAACCACCTTGTAAATTACT 58.618 37.500 4.67 0.00 0.00 2.24
2233 4416 6.535540 TGCTGAACCACCTTGTAAATTACTA 58.464 36.000 4.67 0.00 0.00 1.82
2236 4719 7.120726 GCTGAACCACCTTGTAAATTACTATGT 59.879 37.037 4.67 0.00 0.00 2.29
2271 4765 0.257328 TGTGTGTCCAGGCCAAGAAA 59.743 50.000 5.01 0.00 0.00 2.52
2275 4769 2.173782 TGTGTCCAGGCCAAGAAACTTA 59.826 45.455 5.01 0.00 0.00 2.24
2276 4770 3.219281 GTGTCCAGGCCAAGAAACTTAA 58.781 45.455 5.01 0.00 0.00 1.85
2277 4771 3.634910 GTGTCCAGGCCAAGAAACTTAAA 59.365 43.478 5.01 0.00 0.00 1.52
2311 4805 3.756082 TGGGATGCCAGGTTTTTCTAT 57.244 42.857 0.00 0.00 0.00 1.98
2517 5034 5.296035 GCATTACAACCCTACATTACACCTC 59.704 44.000 0.00 0.00 0.00 3.85
2538 5055 0.831711 ACCTTTTCTTTGCGGGGCAT 60.832 50.000 0.00 0.00 38.76 4.40
2569 5086 5.679734 CGTGTACCTTATACGTAGGTGAT 57.320 43.478 17.09 0.00 45.45 3.06
2589 5106 5.460419 GTGATCTTCAGTATAGCAAAGACCG 59.540 44.000 0.00 0.00 31.05 4.79
2595 5112 4.337274 TCAGTATAGCAAAGACCGATTCGA 59.663 41.667 7.83 0.00 0.00 3.71
2648 5171 0.615331 GAAGATGTGGTCTCTGGCCA 59.385 55.000 4.71 4.71 35.67 5.36
2652 5175 0.773644 ATGTGGTCTCTGGCCAGTTT 59.226 50.000 31.58 6.66 36.57 2.66
2677 5200 2.201732 GATTTCTGCCAAGCATGCATG 58.798 47.619 22.70 22.70 38.13 4.06
2715 5238 3.436015 CAGTCATCAAGCTTCTTCCTGTG 59.564 47.826 0.00 0.00 0.00 3.66
2719 5242 2.653726 TCAAGCTTCTTCCTGTGCAAA 58.346 42.857 0.00 0.00 0.00 3.68
2721 5244 0.947244 AGCTTCTTCCTGTGCAAACG 59.053 50.000 0.00 0.00 0.00 3.60
2781 5304 5.073144 ACCCATTTTCTGAACTTGAGACCTA 59.927 40.000 0.00 0.00 0.00 3.08
2792 5315 3.502211 ACTTGAGACCTATGGCGTTTTTG 59.498 43.478 0.00 0.00 0.00 2.44
2793 5316 1.810151 TGAGACCTATGGCGTTTTTGC 59.190 47.619 0.00 0.00 0.00 3.68
2868 5392 7.761651 AAAAAGAAGAAGAAATTCAGTGCAC 57.238 32.000 9.40 9.40 0.00 4.57
2869 5393 6.455360 AAAGAAGAAGAAATTCAGTGCACA 57.545 33.333 21.04 0.00 0.00 4.57
2870 5394 5.429957 AGAAGAAGAAATTCAGTGCACAC 57.570 39.130 21.04 0.00 0.00 3.82
2871 5395 4.883585 AGAAGAAGAAATTCAGTGCACACA 59.116 37.500 21.04 0.84 0.00 3.72
2933 5944 2.226262 CGTATGGACGCAACAACAAG 57.774 50.000 0.00 0.00 43.21 3.16
2934 5945 1.136085 CGTATGGACGCAACAACAAGG 60.136 52.381 0.00 0.00 43.21 3.61
2939 5950 1.305201 GACGCAACAACAAGGGAGAA 58.695 50.000 0.00 0.00 0.00 2.87
2949 5960 4.354087 ACAACAAGGGAGAAGATTTAGGGT 59.646 41.667 0.00 0.00 0.00 4.34
2956 5967 3.383825 GGAGAAGATTTAGGGTACGCAGA 59.616 47.826 12.95 0.00 0.00 4.26
2990 6001 3.698040 GTGGATCTTGTGCCATTGATCTT 59.302 43.478 0.00 0.00 36.41 2.40
2993 6004 1.739466 TCTTGTGCCATTGATCTTCGC 59.261 47.619 0.00 0.00 0.00 4.70
3023 6034 6.812879 TCACGTATTCGGTGATGTATAGAT 57.187 37.500 0.00 0.00 41.85 1.98
3028 6039 7.127042 CGTATTCGGTGATGTATAGATAGAGC 58.873 42.308 0.00 0.00 0.00 4.09
3029 6040 5.547181 TTCGGTGATGTATAGATAGAGCG 57.453 43.478 6.62 6.62 0.00 5.03
3030 6041 4.828829 TCGGTGATGTATAGATAGAGCGA 58.171 43.478 10.04 10.04 0.00 4.93
3031 6042 4.870991 TCGGTGATGTATAGATAGAGCGAG 59.129 45.833 10.04 0.00 0.00 5.03
3032 6043 4.870991 CGGTGATGTATAGATAGAGCGAGA 59.129 45.833 6.99 0.00 0.00 4.04
3033 6044 5.006261 CGGTGATGTATAGATAGAGCGAGAG 59.994 48.000 6.99 0.00 0.00 3.20
3034 6045 5.295787 GGTGATGTATAGATAGAGCGAGAGG 59.704 48.000 0.00 0.00 0.00 3.69
3035 6046 5.295787 GTGATGTATAGATAGAGCGAGAGGG 59.704 48.000 0.00 0.00 0.00 4.30
3036 6047 3.611970 TGTATAGATAGAGCGAGAGGGC 58.388 50.000 0.00 0.00 0.00 5.19
3037 6048 2.137810 ATAGATAGAGCGAGAGGGCC 57.862 55.000 0.00 0.00 0.00 5.80
3038 6049 0.321741 TAGATAGAGCGAGAGGGCCG 60.322 60.000 0.00 0.00 0.00 6.13
3039 6050 1.899534 GATAGAGCGAGAGGGCCGT 60.900 63.158 0.00 0.00 0.00 5.68
3040 6051 1.455959 ATAGAGCGAGAGGGCCGTT 60.456 57.895 0.00 0.00 0.00 4.44
3041 6052 1.043673 ATAGAGCGAGAGGGCCGTTT 61.044 55.000 0.00 0.00 0.00 3.60
3042 6053 1.255667 TAGAGCGAGAGGGCCGTTTT 61.256 55.000 0.00 0.00 0.00 2.43
3043 6054 2.358737 AGCGAGAGGGCCGTTTTG 60.359 61.111 0.00 0.00 0.00 2.44
3044 6055 3.431725 GCGAGAGGGCCGTTTTGG 61.432 66.667 0.00 0.00 42.50 3.28
3053 6064 4.492604 CCGTTTTGGCTCTTGGGA 57.507 55.556 0.00 0.00 0.00 4.37
3054 6065 2.257353 CCGTTTTGGCTCTTGGGAG 58.743 57.895 0.00 0.00 42.18 4.30
3076 6087 4.392940 GCATATGCTCCCTAATGAACAGT 58.607 43.478 20.64 0.00 38.21 3.55
3077 6088 5.551233 GCATATGCTCCCTAATGAACAGTA 58.449 41.667 20.64 0.00 38.21 2.74
3078 6089 5.997746 GCATATGCTCCCTAATGAACAGTAA 59.002 40.000 20.64 0.00 38.21 2.24
3079 6090 6.486657 GCATATGCTCCCTAATGAACAGTAAA 59.513 38.462 20.64 0.00 38.21 2.01
3080 6091 7.175641 GCATATGCTCCCTAATGAACAGTAAAT 59.824 37.037 20.64 0.00 38.21 1.40
3081 6092 9.071276 CATATGCTCCCTAATGAACAGTAAATT 57.929 33.333 0.00 0.00 0.00 1.82
3082 6093 6.757897 TGCTCCCTAATGAACAGTAAATTG 57.242 37.500 0.00 0.00 0.00 2.32
3083 6094 6.480763 TGCTCCCTAATGAACAGTAAATTGA 58.519 36.000 0.00 0.00 0.00 2.57
3084 6095 6.945435 TGCTCCCTAATGAACAGTAAATTGAA 59.055 34.615 0.00 0.00 0.00 2.69
3085 6096 7.450014 TGCTCCCTAATGAACAGTAAATTGAAA 59.550 33.333 0.00 0.00 0.00 2.69
3086 6097 8.303876 GCTCCCTAATGAACAGTAAATTGAAAA 58.696 33.333 0.00 0.00 0.00 2.29
3143 6154 6.592798 TTTTCGTAGGTGTTCTTGTTAGTG 57.407 37.500 0.00 0.00 0.00 2.74
3144 6155 4.924305 TCGTAGGTGTTCTTGTTAGTGT 57.076 40.909 0.00 0.00 0.00 3.55
3145 6156 6.389830 TTCGTAGGTGTTCTTGTTAGTGTA 57.610 37.500 0.00 0.00 0.00 2.90
3146 6157 6.389830 TCGTAGGTGTTCTTGTTAGTGTAA 57.610 37.500 0.00 0.00 0.00 2.41
3147 6158 6.208644 TCGTAGGTGTTCTTGTTAGTGTAAC 58.791 40.000 0.00 0.00 39.11 2.50
3148 6159 5.978919 CGTAGGTGTTCTTGTTAGTGTAACA 59.021 40.000 0.00 0.00 46.13 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.978617 CCTCACCATTGCACCACCC 60.979 63.158 0.00 0.00 0.00 4.61
1 2 2.639327 GCCTCACCATTGCACCACC 61.639 63.158 0.00 0.00 0.00 4.61
2 3 2.964978 GCCTCACCATTGCACCAC 59.035 61.111 0.00 0.00 0.00 4.16
4 5 3.443045 CCGCCTCACCATTGCACC 61.443 66.667 0.00 0.00 0.00 5.01
6 7 4.657408 TGCCGCCTCACCATTGCA 62.657 61.111 0.00 0.00 0.00 4.08
7 8 4.120331 GTGCCGCCTCACCATTGC 62.120 66.667 0.00 0.00 0.00 3.56
13 14 2.743928 CTCTTGGTGCCGCCTCAC 60.744 66.667 0.00 0.00 38.35 3.51
14 15 4.020617 CCTCTTGGTGCCGCCTCA 62.021 66.667 0.00 0.00 38.35 3.86
15 16 3.672295 CTCCTCTTGGTGCCGCCTC 62.672 68.421 0.00 0.00 38.35 4.70
16 17 3.710722 CTCCTCTTGGTGCCGCCT 61.711 66.667 0.00 0.00 38.35 5.52
17 18 2.932130 GATCTCCTCTTGGTGCCGCC 62.932 65.000 0.00 0.00 37.90 6.13
18 19 1.522580 GATCTCCTCTTGGTGCCGC 60.523 63.158 0.00 0.00 34.23 6.53
19 20 0.103937 GAGATCTCCTCTTGGTGCCG 59.896 60.000 12.00 0.00 38.86 5.69
20 21 0.103937 CGAGATCTCCTCTTGGTGCC 59.896 60.000 17.13 0.00 39.78 5.01
21 22 0.820871 ACGAGATCTCCTCTTGGTGC 59.179 55.000 17.13 0.00 39.43 5.01
22 23 1.470632 GCACGAGATCTCCTCTTGGTG 60.471 57.143 17.13 17.11 40.39 4.17
23 24 0.820871 GCACGAGATCTCCTCTTGGT 59.179 55.000 17.13 5.07 40.39 3.67
24 25 0.103937 GGCACGAGATCTCCTCTTGG 59.896 60.000 17.13 4.42 40.39 3.61
25 26 0.820226 TGGCACGAGATCTCCTCTTG 59.180 55.000 17.13 9.95 42.25 3.02
26 27 1.110442 CTGGCACGAGATCTCCTCTT 58.890 55.000 17.13 0.00 39.78 2.85
27 28 0.257328 TCTGGCACGAGATCTCCTCT 59.743 55.000 17.13 0.00 39.78 3.69
28 29 0.383949 GTCTGGCACGAGATCTCCTC 59.616 60.000 17.13 6.11 38.55 3.71
29 30 0.323816 TGTCTGGCACGAGATCTCCT 60.324 55.000 17.13 2.54 0.00 3.69
30 31 0.532573 TTGTCTGGCACGAGATCTCC 59.467 55.000 17.13 4.15 0.00 3.71
31 32 2.200067 CATTGTCTGGCACGAGATCTC 58.800 52.381 13.05 13.05 0.00 2.75
32 33 1.741732 GCATTGTCTGGCACGAGATCT 60.742 52.381 0.00 0.00 0.00 2.75
33 34 0.654683 GCATTGTCTGGCACGAGATC 59.345 55.000 0.00 0.00 0.00 2.75
34 35 1.086067 CGCATTGTCTGGCACGAGAT 61.086 55.000 0.00 0.00 0.00 2.75
35 36 1.737735 CGCATTGTCTGGCACGAGA 60.738 57.895 0.00 0.00 0.00 4.04
36 37 1.690283 CTCGCATTGTCTGGCACGAG 61.690 60.000 6.41 6.41 40.70 4.18
37 38 1.737735 CTCGCATTGTCTGGCACGA 60.738 57.895 0.00 0.00 0.00 4.35
38 39 1.690283 CTCTCGCATTGTCTGGCACG 61.690 60.000 0.00 0.00 0.00 5.34
39 40 1.364626 CCTCTCGCATTGTCTGGCAC 61.365 60.000 0.00 0.00 0.00 5.01
40 41 1.078918 CCTCTCGCATTGTCTGGCA 60.079 57.895 0.00 0.00 0.00 4.92
41 42 1.078848 ACCTCTCGCATTGTCTGGC 60.079 57.895 0.00 0.00 0.00 4.85
42 43 0.247460 TCACCTCTCGCATTGTCTGG 59.753 55.000 0.00 0.00 0.00 3.86
43 44 1.337167 TGTCACCTCTCGCATTGTCTG 60.337 52.381 0.00 0.00 0.00 3.51
44 45 0.969149 TGTCACCTCTCGCATTGTCT 59.031 50.000 0.00 0.00 0.00 3.41
45 46 1.071605 GTGTCACCTCTCGCATTGTC 58.928 55.000 0.00 0.00 0.00 3.18
46 47 0.392706 TGTGTCACCTCTCGCATTGT 59.607 50.000 0.00 0.00 0.00 2.71
47 48 1.662629 GATGTGTCACCTCTCGCATTG 59.337 52.381 0.00 0.00 35.38 2.82
48 49 1.406069 GGATGTGTCACCTCTCGCATT 60.406 52.381 8.00 0.00 35.38 3.56
49 50 0.176680 GGATGTGTCACCTCTCGCAT 59.823 55.000 8.00 0.00 37.47 4.73
50 51 1.184970 TGGATGTGTCACCTCTCGCA 61.185 55.000 8.00 0.00 0.00 5.10
51 52 0.459237 CTGGATGTGTCACCTCTCGC 60.459 60.000 8.00 0.00 0.00 5.03
52 53 1.133982 CTCTGGATGTGTCACCTCTCG 59.866 57.143 8.00 1.08 0.00 4.04
53 54 2.426738 CTCTCTGGATGTGTCACCTCTC 59.573 54.545 8.00 0.00 0.00 3.20
54 55 2.455557 CTCTCTGGATGTGTCACCTCT 58.544 52.381 8.00 0.00 0.00 3.69
55 56 1.480137 CCTCTCTGGATGTGTCACCTC 59.520 57.143 0.00 0.00 38.35 3.85
56 57 1.077828 TCCTCTCTGGATGTGTCACCT 59.922 52.381 0.00 0.00 40.56 4.00
57 58 1.480137 CTCCTCTCTGGATGTGTCACC 59.520 57.143 0.00 0.00 45.16 4.02
58 59 1.480137 CCTCCTCTCTGGATGTGTCAC 59.520 57.143 0.00 0.00 45.16 3.67
59 60 1.077828 ACCTCCTCTCTGGATGTGTCA 59.922 52.381 0.00 0.00 45.16 3.58
60 61 1.859302 ACCTCCTCTCTGGATGTGTC 58.141 55.000 0.00 0.00 45.16 3.67
63 64 0.415429 ACCACCTCCTCTCTGGATGT 59.585 55.000 0.00 0.00 45.16 3.06
64 65 1.118838 GACCACCTCCTCTCTGGATG 58.881 60.000 0.00 0.00 45.16 3.51
65 66 0.396417 CGACCACCTCCTCTCTGGAT 60.396 60.000 0.00 0.00 45.16 3.41
66 67 1.000771 CGACCACCTCCTCTCTGGA 60.001 63.158 0.00 0.00 43.86 3.86
67 68 0.396417 ATCGACCACCTCCTCTCTGG 60.396 60.000 0.00 0.00 37.10 3.86
68 69 0.743688 CATCGACCACCTCCTCTCTG 59.256 60.000 0.00 0.00 0.00 3.35
69 70 0.396417 CCATCGACCACCTCCTCTCT 60.396 60.000 0.00 0.00 0.00 3.10
70 71 0.684805 ACCATCGACCACCTCCTCTC 60.685 60.000 0.00 0.00 0.00 3.20
71 72 0.684805 GACCATCGACCACCTCCTCT 60.685 60.000 0.00 0.00 0.00 3.69
72 73 0.684805 AGACCATCGACCACCTCCTC 60.685 60.000 0.00 0.00 0.00 3.71
73 74 0.684805 GAGACCATCGACCACCTCCT 60.685 60.000 0.00 0.00 0.00 3.69
74 75 1.817209 GAGACCATCGACCACCTCC 59.183 63.158 0.00 0.00 0.00 4.30
84 85 2.231478 TGACCAAGAGAACGAGACCATC 59.769 50.000 0.00 0.00 0.00 3.51
85 86 2.248248 TGACCAAGAGAACGAGACCAT 58.752 47.619 0.00 0.00 0.00 3.55
86 87 1.699730 TGACCAAGAGAACGAGACCA 58.300 50.000 0.00 0.00 0.00 4.02
87 88 2.814280 TTGACCAAGAGAACGAGACC 57.186 50.000 0.00 0.00 0.00 3.85
88 89 4.024809 CCTTTTTGACCAAGAGAACGAGAC 60.025 45.833 0.00 0.00 0.00 3.36
89 90 4.127171 CCTTTTTGACCAAGAGAACGAGA 58.873 43.478 0.00 0.00 0.00 4.04
90 91 3.251004 CCCTTTTTGACCAAGAGAACGAG 59.749 47.826 0.00 0.00 0.00 4.18
91 92 3.118186 TCCCTTTTTGACCAAGAGAACGA 60.118 43.478 0.00 0.00 0.00 3.85
92 93 3.211045 TCCCTTTTTGACCAAGAGAACG 58.789 45.455 0.00 0.00 0.00 3.95
93 94 4.461198 TCTCCCTTTTTGACCAAGAGAAC 58.539 43.478 0.00 0.00 0.00 3.01
94 95 4.166144 ACTCTCCCTTTTTGACCAAGAGAA 59.834 41.667 3.68 0.00 34.34 2.87
95 96 3.716872 ACTCTCCCTTTTTGACCAAGAGA 59.283 43.478 3.68 0.00 34.34 3.10
96 97 3.817647 CACTCTCCCTTTTTGACCAAGAG 59.182 47.826 0.00 0.00 35.90 2.85
97 98 3.435026 CCACTCTCCCTTTTTGACCAAGA 60.435 47.826 0.00 0.00 0.00 3.02
98 99 2.887152 CCACTCTCCCTTTTTGACCAAG 59.113 50.000 0.00 0.00 0.00 3.61
99 100 2.512056 TCCACTCTCCCTTTTTGACCAA 59.488 45.455 0.00 0.00 0.00 3.67
100 101 2.106511 CTCCACTCTCCCTTTTTGACCA 59.893 50.000 0.00 0.00 0.00 4.02
101 102 2.372172 TCTCCACTCTCCCTTTTTGACC 59.628 50.000 0.00 0.00 0.00 4.02
102 103 3.771577 TCTCCACTCTCCCTTTTTGAC 57.228 47.619 0.00 0.00 0.00 3.18
103 104 3.716872 ACTTCTCCACTCTCCCTTTTTGA 59.283 43.478 0.00 0.00 0.00 2.69
104 105 3.817647 CACTTCTCCACTCTCCCTTTTTG 59.182 47.826 0.00 0.00 0.00 2.44
105 106 3.181439 CCACTTCTCCACTCTCCCTTTTT 60.181 47.826 0.00 0.00 0.00 1.94
106 107 2.373502 CCACTTCTCCACTCTCCCTTTT 59.626 50.000 0.00 0.00 0.00 2.27
107 108 1.981495 CCACTTCTCCACTCTCCCTTT 59.019 52.381 0.00 0.00 0.00 3.11
108 109 1.150135 TCCACTTCTCCACTCTCCCTT 59.850 52.381 0.00 0.00 0.00 3.95
109 110 0.787084 TCCACTTCTCCACTCTCCCT 59.213 55.000 0.00 0.00 0.00 4.20
110 111 1.190643 CTCCACTTCTCCACTCTCCC 58.809 60.000 0.00 0.00 0.00 4.30
111 112 1.190643 CCTCCACTTCTCCACTCTCC 58.809 60.000 0.00 0.00 0.00 3.71
112 113 1.190643 CCCTCCACTTCTCCACTCTC 58.809 60.000 0.00 0.00 0.00 3.20
113 114 0.252467 CCCCTCCACTTCTCCACTCT 60.252 60.000 0.00 0.00 0.00 3.24
114 115 0.252284 TCCCCTCCACTTCTCCACTC 60.252 60.000 0.00 0.00 0.00 3.51
115 116 0.252467 CTCCCCTCCACTTCTCCACT 60.252 60.000 0.00 0.00 0.00 4.00
116 117 1.904990 GCTCCCCTCCACTTCTCCAC 61.905 65.000 0.00 0.00 0.00 4.02
117 118 1.613630 GCTCCCCTCCACTTCTCCA 60.614 63.158 0.00 0.00 0.00 3.86
118 119 2.371259 GGCTCCCCTCCACTTCTCC 61.371 68.421 0.00 0.00 0.00 3.71
119 120 2.726351 CGGCTCCCCTCCACTTCTC 61.726 68.421 0.00 0.00 0.00 2.87
120 121 2.685380 CGGCTCCCCTCCACTTCT 60.685 66.667 0.00 0.00 0.00 2.85
121 122 3.787001 CCGGCTCCCCTCCACTTC 61.787 72.222 0.00 0.00 0.00 3.01
128 129 4.760220 ATGTTCCCCGGCTCCCCT 62.760 66.667 0.00 0.00 0.00 4.79
129 130 4.506255 CATGTTCCCCGGCTCCCC 62.506 72.222 0.00 0.00 0.00 4.81
130 131 4.506255 CCATGTTCCCCGGCTCCC 62.506 72.222 0.00 0.00 0.00 4.30
136 137 4.096003 AGTCCGCCATGTTCCCCG 62.096 66.667 0.00 0.00 0.00 5.73
137 138 2.124695 GAGTCCGCCATGTTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
138 139 1.153349 GAGAGTCCGCCATGTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
139 140 0.179097 GAGAGAGTCCGCCATGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
140 141 0.526524 CGAGAGAGTCCGCCATGTTC 60.527 60.000 0.00 0.00 0.00 3.18
141 142 1.513158 CGAGAGAGTCCGCCATGTT 59.487 57.895 0.00 0.00 0.00 2.71
142 143 3.069980 GCGAGAGAGTCCGCCATGT 62.070 63.158 1.29 0.00 45.06 3.21
143 144 2.279120 GCGAGAGAGTCCGCCATG 60.279 66.667 1.29 0.00 45.06 3.66
148 149 0.382158 TGCATAAGCGAGAGAGTCCG 59.618 55.000 0.00 0.00 46.23 4.79
149 150 1.846541 GTGCATAAGCGAGAGAGTCC 58.153 55.000 0.00 0.00 46.23 3.85
150 151 1.471964 CGTGCATAAGCGAGAGAGTC 58.528 55.000 0.00 0.00 46.23 3.36
151 152 0.526524 GCGTGCATAAGCGAGAGAGT 60.527 55.000 0.00 0.00 46.23 3.24
152 153 1.211818 GGCGTGCATAAGCGAGAGAG 61.212 60.000 0.00 0.00 46.23 3.20
153 154 1.226974 GGCGTGCATAAGCGAGAGA 60.227 57.895 0.00 0.00 46.23 3.10
154 155 2.240500 GGGCGTGCATAAGCGAGAG 61.241 63.158 0.00 0.00 46.23 3.20
155 156 2.202878 GGGCGTGCATAAGCGAGA 60.203 61.111 0.00 0.00 46.23 4.04
156 157 2.106074 TTGGGCGTGCATAAGCGAG 61.106 57.895 0.00 0.00 46.23 5.03
157 158 2.046796 TTGGGCGTGCATAAGCGA 60.047 55.556 0.00 0.00 46.23 4.93
158 159 1.992233 ATGTTGGGCGTGCATAAGCG 61.992 55.000 0.00 0.00 46.23 4.68
159 160 0.248621 GATGTTGGGCGTGCATAAGC 60.249 55.000 0.00 0.00 42.57 3.09
160 161 1.093972 TGATGTTGGGCGTGCATAAG 58.906 50.000 0.00 0.00 0.00 1.73
161 162 1.539157 TTGATGTTGGGCGTGCATAA 58.461 45.000 0.00 0.00 0.00 1.90
162 163 1.761449 ATTGATGTTGGGCGTGCATA 58.239 45.000 0.00 0.00 0.00 3.14
163 164 1.405105 GTATTGATGTTGGGCGTGCAT 59.595 47.619 0.00 0.00 0.00 3.96
164 165 0.808125 GTATTGATGTTGGGCGTGCA 59.192 50.000 0.00 0.00 0.00 4.57
165 166 0.100503 GGTATTGATGTTGGGCGTGC 59.899 55.000 0.00 0.00 0.00 5.34
166 167 1.401552 CAGGTATTGATGTTGGGCGTG 59.598 52.381 0.00 0.00 0.00 5.34
167 168 1.280710 TCAGGTATTGATGTTGGGCGT 59.719 47.619 0.00 0.00 0.00 5.68
168 169 2.036958 TCAGGTATTGATGTTGGGCG 57.963 50.000 0.00 0.00 0.00 6.13
169 170 2.099756 GCTTCAGGTATTGATGTTGGGC 59.900 50.000 0.00 0.00 35.27 5.36
170 171 3.129287 GTGCTTCAGGTATTGATGTTGGG 59.871 47.826 0.00 0.00 35.27 4.12
171 172 4.012374 AGTGCTTCAGGTATTGATGTTGG 58.988 43.478 0.00 0.00 35.27 3.77
172 173 6.741992 TTAGTGCTTCAGGTATTGATGTTG 57.258 37.500 0.00 0.00 35.27 3.33
173 174 6.127897 GCTTTAGTGCTTCAGGTATTGATGTT 60.128 38.462 0.00 0.00 35.27 2.71
174 175 5.355350 GCTTTAGTGCTTCAGGTATTGATGT 59.645 40.000 0.00 0.00 35.27 3.06
175 176 5.503031 CGCTTTAGTGCTTCAGGTATTGATG 60.503 44.000 0.00 0.00 35.27 3.07
176 177 4.572389 CGCTTTAGTGCTTCAGGTATTGAT 59.428 41.667 0.00 0.00 35.27 2.57
177 178 3.932710 CGCTTTAGTGCTTCAGGTATTGA 59.067 43.478 0.00 0.00 0.00 2.57
178 179 3.063997 CCGCTTTAGTGCTTCAGGTATTG 59.936 47.826 0.00 0.00 0.00 1.90
179 180 3.270877 CCGCTTTAGTGCTTCAGGTATT 58.729 45.455 0.00 0.00 0.00 1.89
180 181 2.906354 CCGCTTTAGTGCTTCAGGTAT 58.094 47.619 0.00 0.00 0.00 2.73
181 182 1.674817 GCCGCTTTAGTGCTTCAGGTA 60.675 52.381 0.00 0.00 0.00 3.08
182 183 0.955919 GCCGCTTTAGTGCTTCAGGT 60.956 55.000 0.00 0.00 0.00 4.00
183 184 0.674895 AGCCGCTTTAGTGCTTCAGG 60.675 55.000 0.00 0.00 29.17 3.86
184 185 1.160137 AAGCCGCTTTAGTGCTTCAG 58.840 50.000 0.00 0.00 41.23 3.02
185 186 3.322514 AAGCCGCTTTAGTGCTTCA 57.677 47.368 0.00 0.00 41.23 3.02
188 189 0.674895 CTGGAAGCCGCTTTAGTGCT 60.675 55.000 7.16 0.00 36.79 4.40
189 190 1.648467 CCTGGAAGCCGCTTTAGTGC 61.648 60.000 7.16 0.00 0.00 4.40
190 191 0.321653 ACCTGGAAGCCGCTTTAGTG 60.322 55.000 7.16 6.27 0.00 2.74
191 192 0.321653 CACCTGGAAGCCGCTTTAGT 60.322 55.000 7.16 0.09 0.00 2.24
192 193 0.036388 TCACCTGGAAGCCGCTTTAG 60.036 55.000 7.16 8.93 0.00 1.85
193 194 0.321298 GTCACCTGGAAGCCGCTTTA 60.321 55.000 7.16 0.00 0.00 1.85
194 195 1.600916 GTCACCTGGAAGCCGCTTT 60.601 57.895 7.16 0.00 0.00 3.51
195 196 2.032681 GTCACCTGGAAGCCGCTT 59.967 61.111 4.98 4.98 0.00 4.68
196 197 1.192146 TAAGTCACCTGGAAGCCGCT 61.192 55.000 0.00 0.00 0.00 5.52
197 198 0.321298 TTAAGTCACCTGGAAGCCGC 60.321 55.000 0.00 0.00 0.00 6.53
198 199 1.804748 GTTTAAGTCACCTGGAAGCCG 59.195 52.381 0.00 0.00 0.00 5.52
199 200 2.160205 GGTTTAAGTCACCTGGAAGCC 58.840 52.381 0.00 0.00 0.00 4.35
200 201 2.160205 GGGTTTAAGTCACCTGGAAGC 58.840 52.381 0.00 0.00 34.36 3.86
201 202 3.412386 CAGGGTTTAAGTCACCTGGAAG 58.588 50.000 0.00 0.00 45.21 3.46
202 203 3.502123 CAGGGTTTAAGTCACCTGGAA 57.498 47.619 0.00 0.00 45.21 3.53
206 207 3.945640 AACACAGGGTTTAAGTCACCT 57.054 42.857 0.00 0.00 35.82 4.00
216 217 7.891498 AGAAGTAAACATAAAACACAGGGTT 57.109 32.000 0.00 0.00 42.98 4.11
316 317 9.447157 TCAACTTTTCCAAACTTTCAAATTCAT 57.553 25.926 0.00 0.00 0.00 2.57
331 332 6.039616 CCGAAATTCAACTTCAACTTTTCCA 58.960 36.000 0.00 0.00 0.00 3.53
382 383 2.506472 GGCTACTGGGCTACTGGC 59.494 66.667 0.00 0.00 40.90 4.85
384 385 0.978146 ACTGGGCTACTGGGCTACTG 60.978 60.000 0.00 0.00 40.65 2.74
385 386 0.635009 TACTGGGCTACTGGGCTACT 59.365 55.000 0.00 0.00 40.65 2.57
387 388 0.105658 CCTACTGGGCTACTGGGCTA 60.106 60.000 0.00 0.00 40.65 3.93
388 389 1.383248 CCTACTGGGCTACTGGGCT 60.383 63.158 0.00 0.00 40.65 5.19
389 390 0.398098 TACCTACTGGGCTACTGGGC 60.398 60.000 0.00 0.00 39.10 5.36
390 391 1.705873 CTACCTACTGGGCTACTGGG 58.294 60.000 0.00 0.00 39.10 4.45
391 392 1.041437 GCTACCTACTGGGCTACTGG 58.959 60.000 0.00 0.00 39.10 4.00
392 393 1.041437 GGCTACCTACTGGGCTACTG 58.959 60.000 0.00 0.00 39.10 2.74
393 394 0.105607 GGGCTACCTACTGGGCTACT 60.106 60.000 0.00 0.00 39.10 2.57
394 395 0.398098 TGGGCTACCTACTGGGCTAC 60.398 60.000 0.00 0.00 39.10 3.58
395 396 0.105658 CTGGGCTACCTACTGGGCTA 60.106 60.000 0.00 0.00 39.10 3.93
396 397 1.383248 CTGGGCTACCTACTGGGCT 60.383 63.158 0.00 0.00 39.10 5.19
397 398 0.398098 TACTGGGCTACCTACTGGGC 60.398 60.000 0.00 0.00 39.10 5.36
398 399 1.705873 CTACTGGGCTACCTACTGGG 58.294 60.000 0.00 0.00 41.89 4.45
399 400 1.041437 GCTACTGGGCTACCTACTGG 58.959 60.000 0.00 0.00 37.76 4.00
400 401 1.041437 GGCTACTGGGCTACCTACTG 58.959 60.000 0.00 0.00 37.76 2.74
401 402 0.105607 GGGCTACTGGGCTACCTACT 60.106 60.000 0.00 0.00 40.65 2.57
402 403 0.398098 TGGGCTACTGGGCTACCTAC 60.398 60.000 0.00 0.00 40.65 3.18
403 404 0.398098 GTGGGCTACTGGGCTACCTA 60.398 60.000 0.00 0.00 44.12 3.08
415 416 2.489329 GTGTACGAGTAGTTGTGGGCTA 59.511 50.000 0.22 0.00 0.00 3.93
455 456 1.834896 GAAGGGGAAGAGGAAGAGGTC 59.165 57.143 0.00 0.00 0.00 3.85
461 462 1.152271 ACCAGAGAAGGGGAAGAGGAA 59.848 52.381 0.00 0.00 0.00 3.36
467 502 1.132527 TGAAGGACCAGAGAAGGGGAA 60.133 52.381 0.00 0.00 0.00 3.97
515 553 1.227089 CGGTGAAGGAGATGGCTCG 60.227 63.158 0.00 0.00 42.25 5.03
518 556 2.514824 GGCGGTGAAGGAGATGGC 60.515 66.667 0.00 0.00 0.00 4.40
553 591 1.979693 AGGACGGAGGACTCACAGC 60.980 63.158 1.32 0.00 0.00 4.40
555 593 2.276116 GCAGGACGGAGGACTCACA 61.276 63.158 1.32 0.00 0.00 3.58
569 607 3.541713 GGGTAGAGGAGGCGCAGG 61.542 72.222 10.83 0.00 0.00 4.85
583 621 1.683418 GAGAATAACGAGGGCCGGGT 61.683 60.000 2.18 0.00 43.93 5.28
614 652 0.447801 GCCTTGAGCACAACCATACG 59.552 55.000 0.00 0.00 42.97 3.06
678 716 3.597728 GCGGGAGAGGTCTAGCGG 61.598 72.222 0.00 0.00 0.00 5.52
705 743 0.901124 CTGCACTAGGAGAAGGCAGT 59.099 55.000 0.00 0.00 45.11 4.40
846 884 6.388619 AACCTAAACTCATAGGGAACACAT 57.611 37.500 5.44 0.00 45.69 3.21
1050 3204 2.890311 CAGCCGAGAGAGGATATCAACT 59.110 50.000 4.83 2.89 0.00 3.16
1065 3219 0.956633 AAGACTTGTACGTCAGCCGA 59.043 50.000 0.00 0.00 40.70 5.54
1128 3282 1.560505 TGCAGTAGTCTGGATCAGCA 58.439 50.000 0.00 0.00 41.57 4.41
1617 3791 0.930310 CCGCATACAACACTCCATCG 59.070 55.000 0.00 0.00 0.00 3.84
1675 3849 3.255642 AGTTTGCCATCACGCATTAACTT 59.744 39.130 0.00 0.00 36.77 2.66
1679 3853 2.163412 GGAAGTTTGCCATCACGCATTA 59.837 45.455 0.00 0.00 38.87 1.90
1684 3858 2.107950 TAGGGAAGTTTGCCATCACG 57.892 50.000 5.19 0.00 41.75 4.35
1698 3872 6.295745 GCTTCTCAATGATCTGATGATAGGGA 60.296 42.308 0.00 0.00 32.19 4.20
1946 4129 2.025793 TCACAGTTCCAAAACCAGTGGA 60.026 45.455 18.40 0.00 43.57 4.02
2059 4242 4.339814 GTCTCGTATCTCATTGAGTTCCCT 59.660 45.833 13.23 0.00 0.00 4.20
2131 4314 4.758674 CACAGAAGATTCTTGAGCTGGAAA 59.241 41.667 3.03 0.00 34.74 3.13
2164 4347 4.002906 TGGCATACAGAAAAGAAGACGT 57.997 40.909 0.00 0.00 0.00 4.34
2188 4371 5.103515 AGCATATAAAACAGGGATTGGTCCT 60.104 40.000 0.00 0.00 44.44 3.85
2194 4377 6.096846 GTGGTTCAGCATATAAAACAGGGATT 59.903 38.462 0.00 0.00 0.00 3.01
2195 4378 5.594317 GTGGTTCAGCATATAAAACAGGGAT 59.406 40.000 0.00 0.00 0.00 3.85
2202 4385 8.410673 TTTACAAGGTGGTTCAGCATATAAAA 57.589 30.769 0.00 0.00 33.95 1.52
2232 4415 8.252417 ACACACATTATAACACCGACTAACATA 58.748 33.333 0.00 0.00 0.00 2.29
2233 4416 7.101054 ACACACATTATAACACCGACTAACAT 58.899 34.615 0.00 0.00 0.00 2.71
2236 4719 6.101332 GGACACACATTATAACACCGACTAA 58.899 40.000 0.00 0.00 0.00 2.24
2238 4721 4.020928 TGGACACACATTATAACACCGACT 60.021 41.667 0.00 0.00 0.00 4.18
2271 4765 9.471084 CATCCCAACGAAATAAAAAGTTTAAGT 57.529 29.630 0.00 0.00 0.00 2.24
2275 4769 5.699001 GGCATCCCAACGAAATAAAAAGTTT 59.301 36.000 0.00 0.00 0.00 2.66
2276 4770 5.221541 TGGCATCCCAACGAAATAAAAAGTT 60.222 36.000 0.00 0.00 38.46 2.66
2277 4771 4.282195 TGGCATCCCAACGAAATAAAAAGT 59.718 37.500 0.00 0.00 38.46 2.66
2288 4782 0.678950 AAAAACCTGGCATCCCAACG 59.321 50.000 0.00 0.00 41.58 4.10
2326 4830 6.183810 ACTTAAACAAGGTAGTAAGCTGGT 57.816 37.500 0.00 0.00 39.11 4.00
2371 4875 6.348458 CGACAAATGGAGCATAAGAAAAGACA 60.348 38.462 0.00 0.00 0.00 3.41
2375 4887 5.957842 ACGACAAATGGAGCATAAGAAAA 57.042 34.783 0.00 0.00 0.00 2.29
2517 5034 1.579429 CCCCGCAAAGAAAAGGTCG 59.421 57.895 0.00 0.00 0.00 4.79
2562 5079 7.201920 GGTCTTTGCTATACTGAAGATCACCTA 60.202 40.741 0.00 0.00 31.26 3.08
2567 5084 5.833082 TCGGTCTTTGCTATACTGAAGATC 58.167 41.667 0.00 0.00 31.52 2.75
2569 5086 5.854010 ATCGGTCTTTGCTATACTGAAGA 57.146 39.130 0.00 0.00 32.54 2.87
2595 5112 3.347216 ACCAGCTGCTATTCGAAATGTT 58.653 40.909 8.66 0.00 0.00 2.71
2648 5171 3.494924 GCTTGGCAGAAATCCCAAAAACT 60.495 43.478 0.00 0.00 40.35 2.66
2652 5175 1.714541 TGCTTGGCAGAAATCCCAAA 58.285 45.000 0.00 0.00 40.35 3.28
2691 5214 3.933955 CAGGAAGAAGCTTGATGACTGAG 59.066 47.826 2.10 0.00 0.00 3.35
2721 5244 1.654743 GCTCGAGTACACGCCGATC 60.655 63.158 15.13 0.00 0.00 3.69
2735 5258 1.066908 GAACTCTCTCCTCATGGCTCG 59.933 57.143 0.00 0.00 0.00 5.03
2742 5265 2.398754 TGGGTTGAACTCTCTCCTCA 57.601 50.000 0.00 0.00 0.00 3.86
2781 5304 1.169661 TCGTGGAGCAAAAACGCCAT 61.170 50.000 0.00 0.00 41.78 4.40
2811 5335 1.378882 TTCATCCAGGCGAGCAATGC 61.379 55.000 0.00 0.00 0.00 3.56
2844 5368 7.276438 GTGTGCACTGAATTTCTTCTTCTTTTT 59.724 33.333 19.41 0.00 32.29 1.94
2845 5369 6.753744 GTGTGCACTGAATTTCTTCTTCTTTT 59.246 34.615 19.41 0.00 32.29 2.27
2849 5373 4.972440 GTGTGTGCACTGAATTTCTTCTTC 59.028 41.667 19.41 0.00 42.13 2.87
2895 5419 0.646895 GTTGCTTGTTGCTTGTGTGC 59.353 50.000 0.00 0.00 43.37 4.57
2901 5425 2.031157 GTCCATACGTTGCTTGTTGCTT 60.031 45.455 0.00 0.00 43.37 3.91
2920 5931 1.264288 CTTCTCCCTTGTTGTTGCGTC 59.736 52.381 0.00 0.00 0.00 5.19
2930 5941 4.694339 CGTACCCTAAATCTTCTCCCTTG 58.306 47.826 0.00 0.00 0.00 3.61
2931 5942 3.134262 GCGTACCCTAAATCTTCTCCCTT 59.866 47.826 0.00 0.00 0.00 3.95
2932 5943 2.699321 GCGTACCCTAAATCTTCTCCCT 59.301 50.000 0.00 0.00 0.00 4.20
2933 5944 2.433239 TGCGTACCCTAAATCTTCTCCC 59.567 50.000 0.00 0.00 0.00 4.30
2934 5945 3.383825 TCTGCGTACCCTAAATCTTCTCC 59.616 47.826 0.00 0.00 0.00 3.71
2939 5950 2.296471 CGGATCTGCGTACCCTAAATCT 59.704 50.000 0.00 0.00 0.00 2.40
2990 6001 2.190161 CGAATACGTGAATCTTGGCGA 58.810 47.619 0.00 0.00 34.56 5.54
2993 6004 3.517602 TCACCGAATACGTGAATCTTGG 58.482 45.455 0.00 0.00 37.88 3.61
3023 6034 1.255667 AAAACGGCCCTCTCGCTCTA 61.256 55.000 0.00 0.00 0.00 2.43
3036 6047 2.257353 CTCCCAAGAGCCAAAACGG 58.743 57.895 0.00 0.00 32.13 4.44
3054 6065 4.392940 ACTGTTCATTAGGGAGCATATGC 58.607 43.478 20.36 20.36 42.49 3.14
3055 6066 8.627208 ATTTACTGTTCATTAGGGAGCATATG 57.373 34.615 0.00 0.00 0.00 1.78
3056 6067 9.071276 CAATTTACTGTTCATTAGGGAGCATAT 57.929 33.333 0.00 0.00 0.00 1.78
3057 6068 8.271458 TCAATTTACTGTTCATTAGGGAGCATA 58.729 33.333 0.00 0.00 0.00 3.14
3058 6069 7.118723 TCAATTTACTGTTCATTAGGGAGCAT 58.881 34.615 0.00 0.00 0.00 3.79
3059 6070 6.480763 TCAATTTACTGTTCATTAGGGAGCA 58.519 36.000 0.00 0.00 0.00 4.26
3060 6071 7.391148 TTCAATTTACTGTTCATTAGGGAGC 57.609 36.000 0.00 0.00 0.00 4.70
3119 6130 6.594937 ACACTAACAAGAACACCTACGAAAAA 59.405 34.615 0.00 0.00 0.00 1.94
3120 6131 6.108015 ACACTAACAAGAACACCTACGAAAA 58.892 36.000 0.00 0.00 0.00 2.29
3121 6132 5.663456 ACACTAACAAGAACACCTACGAAA 58.337 37.500 0.00 0.00 0.00 3.46
3122 6133 5.266733 ACACTAACAAGAACACCTACGAA 57.733 39.130 0.00 0.00 0.00 3.85
3123 6134 4.924305 ACACTAACAAGAACACCTACGA 57.076 40.909 0.00 0.00 0.00 3.43
3124 6135 5.978919 TGTTACACTAACAAGAACACCTACG 59.021 40.000 0.00 0.00 44.95 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.