Multiple sequence alignment - TraesCS1B01G074600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G074600 chr1B 100.000 4343 0 0 1 4343 57792688 57788346 0.000000e+00 8021
1 TraesCS1B01G074600 chr1B 86.821 2671 316 18 861 3511 58328868 58326214 0.000000e+00 2950
2 TraesCS1B01G074600 chr1B 83.495 2787 407 30 985 3740 56501868 56499104 0.000000e+00 2549
3 TraesCS1B01G074600 chr1B 85.095 2516 345 14 983 3482 57015830 57018331 0.000000e+00 2542
4 TraesCS1B01G074600 chr1D 95.740 3263 106 20 636 3889 38260080 38256842 0.000000e+00 5225
5 TraesCS1B01G074600 chr1D 84.618 3465 441 48 878 4287 38584193 38580766 0.000000e+00 3362
6 TraesCS1B01G074600 chr1D 86.306 2921 344 28 652 3551 37965174 37962289 0.000000e+00 3127
7 TraesCS1B01G074600 chr1D 85.930 2644 314 36 887 3511 38368168 38365564 0.000000e+00 2769
8 TraesCS1B01G074600 chr1D 83.809 2699 402 19 1063 3740 36624586 36621902 0.000000e+00 2531
9 TraesCS1B01G074600 chr1D 84.152 2625 385 20 939 3544 37423721 37426333 0.000000e+00 2514
10 TraesCS1B01G074600 chr1D 97.149 456 13 0 3888 4343 38256718 38256263 0.000000e+00 771
11 TraesCS1B01G074600 chr1D 93.727 271 16 1 1 271 38285642 38285373 5.230000e-109 405
12 TraesCS1B01G074600 chr1D 92.430 251 18 1 273 522 38260724 38260474 1.490000e-94 357
13 TraesCS1B01G074600 chr1D 95.455 110 4 1 521 630 38260274 38260166 1.610000e-39 174
14 TraesCS1B01G074600 chr1D 96.970 66 2 0 589 654 37966482 37966417 1.280000e-20 111
15 TraesCS1B01G074600 chr1A 84.692 2600 364 20 992 3573 36613124 36615707 0.000000e+00 2566


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G074600 chr1B 57788346 57792688 4342 True 8021.00 8021 100.0000 1 4343 1 chr1B.!!$R2 4342
1 TraesCS1B01G074600 chr1B 58326214 58328868 2654 True 2950.00 2950 86.8210 861 3511 1 chr1B.!!$R3 2650
2 TraesCS1B01G074600 chr1B 56499104 56501868 2764 True 2549.00 2549 83.4950 985 3740 1 chr1B.!!$R1 2755
3 TraesCS1B01G074600 chr1B 57015830 57018331 2501 False 2542.00 2542 85.0950 983 3482 1 chr1B.!!$F1 2499
4 TraesCS1B01G074600 chr1D 38580766 38584193 3427 True 3362.00 3362 84.6180 878 4287 1 chr1D.!!$R4 3409
5 TraesCS1B01G074600 chr1D 38365564 38368168 2604 True 2769.00 2769 85.9300 887 3511 1 chr1D.!!$R3 2624
6 TraesCS1B01G074600 chr1D 36621902 36624586 2684 True 2531.00 2531 83.8090 1063 3740 1 chr1D.!!$R1 2677
7 TraesCS1B01G074600 chr1D 37423721 37426333 2612 False 2514.00 2514 84.1520 939 3544 1 chr1D.!!$F1 2605
8 TraesCS1B01G074600 chr1D 38256263 38260724 4461 True 1631.75 5225 95.1935 273 4343 4 chr1D.!!$R6 4070
9 TraesCS1B01G074600 chr1D 37962289 37966482 4193 True 1619.00 3127 91.6380 589 3551 2 chr1D.!!$R5 2962
10 TraesCS1B01G074600 chr1A 36613124 36615707 2583 False 2566.00 2566 84.6920 992 3573 1 chr1A.!!$F1 2581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.035439 GGACAAGGCCTCCGATGAAA 60.035 55.0 5.23 0.00 0.00 2.69 F
204 205 0.184451 CATGGGCTCTACATGGGCTT 59.816 55.0 0.00 0.00 41.46 4.35 F
205 206 0.184451 ATGGGCTCTACATGGGCTTG 59.816 55.0 0.00 0.00 0.00 4.01 F
209 210 0.253044 GCTCTACATGGGCTTGGACA 59.747 55.0 0.00 0.00 0.00 4.02 F
334 335 0.320374 TTCCTCCTCACGCACGAAAT 59.680 50.0 0.00 0.00 0.00 2.17 F
335 336 0.320374 TCCTCCTCACGCACGAAATT 59.680 50.0 0.00 0.00 0.00 1.82 F
2067 3701 0.453449 GAAGAAGCAAAGAAGCGGCG 60.453 55.0 0.51 0.51 40.15 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 3468 0.322816 GCCTTGTCCATTGCTCTGGA 60.323 55.000 3.97 3.97 43.09 3.86 R
2067 3701 7.725251 TGGCAGTCATGGAATAAAATATTTCC 58.275 34.615 0.10 0.00 41.51 3.13 R
2256 3890 3.833442 CATTGCATCATCCATCATTCCG 58.167 45.455 0.00 0.00 0.00 4.30 R
2287 3922 0.735978 CCTTTTTCCCGCATTTCCGC 60.736 55.000 0.00 0.00 0.00 5.54 R
2332 3967 0.462047 AGTGCGGCTATTACAGTGGC 60.462 55.000 0.00 0.00 0.00 5.01 R
2477 4112 5.995897 TCAGAAACTAACTCCTTGGCTTTAC 59.004 40.000 0.00 0.00 0.00 2.01 R
3753 5413 2.338500 AGTACTTACTGCGCTTCTTGC 58.662 47.619 9.73 0.00 34.72 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.317891 TCACCAATTATATAATGCCTACAACG 57.682 34.615 8.74 0.00 0.00 4.10
30 31 8.151596 TCACCAATTATATAATGCCTACAACGA 58.848 33.333 8.74 0.00 0.00 3.85
31 32 8.779303 CACCAATTATATAATGCCTACAACGAA 58.221 33.333 8.74 0.00 0.00 3.85
32 33 8.999431 ACCAATTATATAATGCCTACAACGAAG 58.001 33.333 8.74 0.00 0.00 3.79
33 34 9.214957 CCAATTATATAATGCCTACAACGAAGA 57.785 33.333 8.74 0.00 0.00 2.87
37 38 9.772973 TTATATAATGCCTACAACGAAGAATGT 57.227 29.630 0.00 0.00 35.60 2.71
38 39 4.946784 AATGCCTACAACGAAGAATGTC 57.053 40.909 0.00 0.00 33.78 3.06
39 40 2.695359 TGCCTACAACGAAGAATGTCC 58.305 47.619 0.00 0.00 33.78 4.02
40 41 2.007608 GCCTACAACGAAGAATGTCCC 58.992 52.381 0.00 0.00 33.78 4.46
41 42 2.354805 GCCTACAACGAAGAATGTCCCT 60.355 50.000 0.00 0.00 33.78 4.20
42 43 3.262420 CCTACAACGAAGAATGTCCCTG 58.738 50.000 0.00 0.00 33.78 4.45
43 44 2.185004 ACAACGAAGAATGTCCCTGG 57.815 50.000 0.00 0.00 0.00 4.45
44 45 0.804989 CAACGAAGAATGTCCCTGGC 59.195 55.000 0.00 0.00 0.00 4.85
45 46 0.673644 AACGAAGAATGTCCCTGGCG 60.674 55.000 0.00 0.00 0.00 5.69
46 47 1.079127 CGAAGAATGTCCCTGGCGT 60.079 57.895 0.00 0.00 0.00 5.68
47 48 0.673644 CGAAGAATGTCCCTGGCGTT 60.674 55.000 0.00 0.00 0.00 4.84
48 49 1.087501 GAAGAATGTCCCTGGCGTTC 58.912 55.000 0.00 0.00 33.39 3.95
49 50 0.400213 AAGAATGTCCCTGGCGTTCA 59.600 50.000 3.75 0.00 35.08 3.18
50 51 0.400213 AGAATGTCCCTGGCGTTCAA 59.600 50.000 3.75 0.00 35.08 2.69
51 52 1.202879 AGAATGTCCCTGGCGTTCAAA 60.203 47.619 3.75 0.00 35.08 2.69
52 53 0.958822 AATGTCCCTGGCGTTCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
66 67 3.821841 GTTCAAACGATCCACCATCAAC 58.178 45.455 0.00 0.00 0.00 3.18
67 68 3.133141 TCAAACGATCCACCATCAACA 57.867 42.857 0.00 0.00 0.00 3.33
68 69 3.073678 TCAAACGATCCACCATCAACAG 58.926 45.455 0.00 0.00 0.00 3.16
69 70 2.813754 CAAACGATCCACCATCAACAGT 59.186 45.455 0.00 0.00 0.00 3.55
70 71 2.386661 ACGATCCACCATCAACAGTC 57.613 50.000 0.00 0.00 0.00 3.51
71 72 1.623311 ACGATCCACCATCAACAGTCA 59.377 47.619 0.00 0.00 0.00 3.41
72 73 2.038426 ACGATCCACCATCAACAGTCAA 59.962 45.455 0.00 0.00 0.00 3.18
73 74 2.674852 CGATCCACCATCAACAGTCAAG 59.325 50.000 0.00 0.00 0.00 3.02
74 75 3.679389 GATCCACCATCAACAGTCAAGT 58.321 45.455 0.00 0.00 0.00 3.16
75 76 2.849942 TCCACCATCAACAGTCAAGTG 58.150 47.619 0.00 0.00 0.00 3.16
76 77 2.437651 TCCACCATCAACAGTCAAGTGA 59.562 45.455 0.00 0.00 0.00 3.41
77 78 3.118075 TCCACCATCAACAGTCAAGTGAA 60.118 43.478 0.00 0.00 0.00 3.18
78 79 3.251729 CCACCATCAACAGTCAAGTGAAG 59.748 47.826 0.00 0.00 0.00 3.02
79 80 4.129380 CACCATCAACAGTCAAGTGAAGA 58.871 43.478 0.00 0.00 0.00 2.87
80 81 4.758674 CACCATCAACAGTCAAGTGAAGAT 59.241 41.667 0.00 0.00 0.00 2.40
81 82 4.758674 ACCATCAACAGTCAAGTGAAGATG 59.241 41.667 12.84 12.84 34.73 2.90
82 83 4.379186 CCATCAACAGTCAAGTGAAGATGC 60.379 45.833 13.68 0.00 34.17 3.91
83 84 4.077300 TCAACAGTCAAGTGAAGATGCT 57.923 40.909 0.00 0.00 0.00 3.79
84 85 4.454678 TCAACAGTCAAGTGAAGATGCTT 58.545 39.130 0.00 0.00 0.00 3.91
85 86 4.274214 TCAACAGTCAAGTGAAGATGCTTG 59.726 41.667 0.00 0.00 42.32 4.01
86 87 4.077300 ACAGTCAAGTGAAGATGCTTGA 57.923 40.909 3.24 3.24 45.88 3.02
91 92 5.813080 TCAAGTGAAGATGCTTGATCATG 57.187 39.130 0.00 0.00 44.01 3.07
92 93 4.095932 TCAAGTGAAGATGCTTGATCATGC 59.904 41.667 23.04 23.04 44.01 4.06
93 94 3.617284 AGTGAAGATGCTTGATCATGCA 58.383 40.909 31.21 31.21 43.98 3.96
94 95 3.377485 AGTGAAGATGCTTGATCATGCAC 59.623 43.478 31.59 24.58 42.92 4.57
95 96 3.377485 GTGAAGATGCTTGATCATGCACT 59.623 43.478 31.59 25.94 42.92 4.40
96 97 4.014406 TGAAGATGCTTGATCATGCACTT 58.986 39.130 31.59 30.38 42.92 3.16
97 98 5.065602 GTGAAGATGCTTGATCATGCACTTA 59.934 40.000 31.59 20.69 42.92 2.24
98 99 5.296035 TGAAGATGCTTGATCATGCACTTAG 59.704 40.000 31.59 10.73 42.92 2.18
99 100 4.778579 AGATGCTTGATCATGCACTTAGT 58.221 39.130 31.59 19.19 42.92 2.24
100 101 4.815308 AGATGCTTGATCATGCACTTAGTC 59.185 41.667 31.59 24.70 42.92 2.59
101 102 4.212143 TGCTTGATCATGCACTTAGTCT 57.788 40.909 27.21 0.00 36.70 3.24
102 103 4.582869 TGCTTGATCATGCACTTAGTCTT 58.417 39.130 27.21 0.00 36.70 3.01
103 104 4.633126 TGCTTGATCATGCACTTAGTCTTC 59.367 41.667 27.21 0.90 36.70 2.87
104 105 4.034975 GCTTGATCATGCACTTAGTCTTCC 59.965 45.833 24.41 0.00 0.00 3.46
105 106 4.824479 TGATCATGCACTTAGTCTTCCA 57.176 40.909 0.00 0.00 0.00 3.53
106 107 4.763073 TGATCATGCACTTAGTCTTCCAG 58.237 43.478 0.00 0.00 0.00 3.86
107 108 4.467438 TGATCATGCACTTAGTCTTCCAGA 59.533 41.667 0.00 0.00 0.00 3.86
108 109 4.193826 TCATGCACTTAGTCTTCCAGAC 57.806 45.455 0.00 0.00 45.38 3.51
115 116 4.436368 GTCTTCCAGACGGAGGGA 57.564 61.111 0.00 0.00 44.10 4.20
116 117 2.667348 GTCTTCCAGACGGAGGGAA 58.333 57.895 4.27 4.27 44.10 3.97
119 120 3.468552 TTCCAGACGGAGGGAAGAA 57.531 52.632 0.47 0.00 44.10 2.52
120 121 1.724545 TTCCAGACGGAGGGAAGAAA 58.275 50.000 0.47 0.00 44.10 2.52
121 122 1.952621 TCCAGACGGAGGGAAGAAAT 58.047 50.000 0.00 0.00 35.91 2.17
122 123 1.831736 TCCAGACGGAGGGAAGAAATC 59.168 52.381 0.00 0.00 35.91 2.17
123 124 1.471676 CCAGACGGAGGGAAGAAATCG 60.472 57.143 0.00 0.00 0.00 3.34
124 125 0.824759 AGACGGAGGGAAGAAATCGG 59.175 55.000 0.00 0.00 0.00 4.18
125 126 0.179081 GACGGAGGGAAGAAATCGGG 60.179 60.000 0.00 0.00 0.00 5.14
126 127 1.146263 CGGAGGGAAGAAATCGGGG 59.854 63.158 0.00 0.00 0.00 5.73
127 128 1.335132 CGGAGGGAAGAAATCGGGGA 61.335 60.000 0.00 0.00 0.00 4.81
128 129 1.141185 GGAGGGAAGAAATCGGGGAT 58.859 55.000 0.00 0.00 0.00 3.85
129 130 1.202818 GGAGGGAAGAAATCGGGGATG 60.203 57.143 0.00 0.00 0.00 3.51
130 131 0.846693 AGGGAAGAAATCGGGGATGG 59.153 55.000 0.00 0.00 0.00 3.51
131 132 0.843984 GGGAAGAAATCGGGGATGGA 59.156 55.000 0.00 0.00 0.00 3.41
132 133 1.477014 GGGAAGAAATCGGGGATGGAC 60.477 57.143 0.00 0.00 0.00 4.02
133 134 1.211949 GGAAGAAATCGGGGATGGACA 59.788 52.381 0.00 0.00 0.00 4.02
134 135 2.356741 GGAAGAAATCGGGGATGGACAA 60.357 50.000 0.00 0.00 0.00 3.18
135 136 2.717639 AGAAATCGGGGATGGACAAG 57.282 50.000 0.00 0.00 0.00 3.16
136 137 1.212935 AGAAATCGGGGATGGACAAGG 59.787 52.381 0.00 0.00 0.00 3.61
137 138 0.395724 AAATCGGGGATGGACAAGGC 60.396 55.000 0.00 0.00 0.00 4.35
138 139 2.284515 AATCGGGGATGGACAAGGCC 62.285 60.000 0.00 0.00 0.00 5.19
139 140 3.411517 CGGGGATGGACAAGGCCT 61.412 66.667 0.00 0.00 0.00 5.19
140 141 2.597903 GGGGATGGACAAGGCCTC 59.402 66.667 5.23 0.00 0.00 4.70
141 142 2.597903 GGGATGGACAAGGCCTCC 59.402 66.667 5.23 3.56 0.00 4.30
142 143 2.190578 GGATGGACAAGGCCTCCG 59.809 66.667 5.23 2.40 0.00 4.63
143 144 2.367202 GGATGGACAAGGCCTCCGA 61.367 63.158 5.23 0.00 0.00 4.55
144 145 1.700042 GGATGGACAAGGCCTCCGAT 61.700 60.000 5.23 0.82 0.00 4.18
145 146 0.533755 GATGGACAAGGCCTCCGATG 60.534 60.000 5.23 2.32 0.00 3.84
146 147 0.982852 ATGGACAAGGCCTCCGATGA 60.983 55.000 5.23 0.00 0.00 2.92
147 148 1.198094 TGGACAAGGCCTCCGATGAA 61.198 55.000 5.23 0.00 0.00 2.57
148 149 0.035439 GGACAAGGCCTCCGATGAAA 60.035 55.000 5.23 0.00 0.00 2.69
149 150 1.613255 GGACAAGGCCTCCGATGAAAA 60.613 52.381 5.23 0.00 0.00 2.29
150 151 2.369394 GACAAGGCCTCCGATGAAAAT 58.631 47.619 5.23 0.00 0.00 1.82
151 152 2.755103 GACAAGGCCTCCGATGAAAATT 59.245 45.455 5.23 0.00 0.00 1.82
152 153 3.165071 ACAAGGCCTCCGATGAAAATTT 58.835 40.909 5.23 0.00 0.00 1.82
153 154 3.578282 ACAAGGCCTCCGATGAAAATTTT 59.422 39.130 5.23 2.28 0.00 1.82
154 155 3.874392 AGGCCTCCGATGAAAATTTTG 57.126 42.857 8.47 0.00 0.00 2.44
155 156 3.165071 AGGCCTCCGATGAAAATTTTGT 58.835 40.909 8.47 0.00 0.00 2.83
156 157 4.340617 AGGCCTCCGATGAAAATTTTGTA 58.659 39.130 8.47 0.00 0.00 2.41
157 158 4.399303 AGGCCTCCGATGAAAATTTTGTAG 59.601 41.667 8.47 0.00 0.00 2.74
158 159 4.157840 GGCCTCCGATGAAAATTTTGTAGT 59.842 41.667 8.47 0.00 0.00 2.73
159 160 5.355910 GGCCTCCGATGAAAATTTTGTAGTA 59.644 40.000 8.47 0.00 0.00 1.82
160 161 6.039382 GGCCTCCGATGAAAATTTTGTAGTAT 59.961 38.462 8.47 0.00 0.00 2.12
161 162 7.132863 GCCTCCGATGAAAATTTTGTAGTATC 58.867 38.462 8.47 3.96 0.00 2.24
162 163 7.012421 GCCTCCGATGAAAATTTTGTAGTATCT 59.988 37.037 8.47 0.00 0.00 1.98
163 164 8.338259 CCTCCGATGAAAATTTTGTAGTATCTG 58.662 37.037 8.47 2.12 0.00 2.90
164 165 7.693952 TCCGATGAAAATTTTGTAGTATCTGC 58.306 34.615 8.47 0.00 0.00 4.26
165 166 7.552687 TCCGATGAAAATTTTGTAGTATCTGCT 59.447 33.333 8.47 0.00 0.00 4.24
166 167 7.641411 CCGATGAAAATTTTGTAGTATCTGCTG 59.359 37.037 8.47 0.00 0.00 4.41
167 168 7.641411 CGATGAAAATTTTGTAGTATCTGCTGG 59.359 37.037 8.47 0.00 0.00 4.85
168 169 7.994425 TGAAAATTTTGTAGTATCTGCTGGA 57.006 32.000 8.47 0.00 0.00 3.86
169 170 7.816640 TGAAAATTTTGTAGTATCTGCTGGAC 58.183 34.615 8.47 0.00 0.00 4.02
170 171 7.665559 TGAAAATTTTGTAGTATCTGCTGGACT 59.334 33.333 8.47 4.87 0.00 3.85
171 172 8.409358 AAAATTTTGTAGTATCTGCTGGACTT 57.591 30.769 1.75 0.00 0.00 3.01
172 173 9.515226 AAAATTTTGTAGTATCTGCTGGACTTA 57.485 29.630 1.75 0.00 0.00 2.24
173 174 9.515226 AAATTTTGTAGTATCTGCTGGACTTAA 57.485 29.630 4.81 0.65 0.00 1.85
174 175 9.515226 AATTTTGTAGTATCTGCTGGACTTAAA 57.485 29.630 4.81 5.21 0.00 1.52
175 176 8.911918 TTTTGTAGTATCTGCTGGACTTAAAA 57.088 30.769 4.81 9.24 0.00 1.52
176 177 8.911918 TTTGTAGTATCTGCTGGACTTAAAAA 57.088 30.769 4.81 2.66 0.00 1.94
177 178 7.900782 TGTAGTATCTGCTGGACTTAAAAAC 57.099 36.000 4.81 0.00 0.00 2.43
178 179 6.588756 TGTAGTATCTGCTGGACTTAAAAACG 59.411 38.462 4.81 0.00 0.00 3.60
179 180 5.790593 AGTATCTGCTGGACTTAAAAACGA 58.209 37.500 0.00 0.00 0.00 3.85
180 181 5.638234 AGTATCTGCTGGACTTAAAAACGAC 59.362 40.000 0.00 0.00 0.00 4.34
181 182 3.799366 TCTGCTGGACTTAAAAACGACA 58.201 40.909 0.00 0.00 0.00 4.35
182 183 3.558418 TCTGCTGGACTTAAAAACGACAC 59.442 43.478 0.00 0.00 0.00 3.67
183 184 3.271729 TGCTGGACTTAAAAACGACACA 58.728 40.909 0.00 0.00 0.00 3.72
184 185 3.880490 TGCTGGACTTAAAAACGACACAT 59.120 39.130 0.00 0.00 0.00 3.21
185 186 4.024387 TGCTGGACTTAAAAACGACACATC 60.024 41.667 0.00 0.00 0.00 3.06
186 187 4.024387 GCTGGACTTAAAAACGACACATCA 60.024 41.667 0.00 0.00 0.00 3.07
187 188 5.334879 GCTGGACTTAAAAACGACACATCAT 60.335 40.000 0.00 0.00 0.00 2.45
188 189 5.996219 TGGACTTAAAAACGACACATCATG 58.004 37.500 0.00 0.00 0.00 3.07
189 190 5.049060 TGGACTTAAAAACGACACATCATGG 60.049 40.000 0.00 0.00 0.00 3.66
190 191 5.371115 ACTTAAAAACGACACATCATGGG 57.629 39.130 0.00 0.00 0.00 4.00
191 192 2.723124 AAAAACGACACATCATGGGC 57.277 45.000 0.00 0.00 0.00 5.36
192 193 1.909700 AAAACGACACATCATGGGCT 58.090 45.000 0.00 0.00 0.00 5.19
193 194 1.453155 AAACGACACATCATGGGCTC 58.547 50.000 0.00 0.00 0.00 4.70
194 195 0.615331 AACGACACATCATGGGCTCT 59.385 50.000 0.00 0.00 0.00 4.09
195 196 1.485124 ACGACACATCATGGGCTCTA 58.515 50.000 0.00 0.00 0.00 2.43
196 197 1.137086 ACGACACATCATGGGCTCTAC 59.863 52.381 0.00 0.00 0.00 2.59
197 198 1.136891 CGACACATCATGGGCTCTACA 59.863 52.381 0.00 0.00 0.00 2.74
198 199 2.224137 CGACACATCATGGGCTCTACAT 60.224 50.000 0.00 0.00 0.00 2.29
199 200 3.136763 GACACATCATGGGCTCTACATG 58.863 50.000 0.00 0.00 45.39 3.21
200 201 2.158711 ACACATCATGGGCTCTACATGG 60.159 50.000 0.00 0.00 44.42 3.66
201 202 1.422781 ACATCATGGGCTCTACATGGG 59.577 52.381 0.00 2.13 44.42 4.00
202 203 0.403271 ATCATGGGCTCTACATGGGC 59.597 55.000 0.00 0.00 44.42 5.36
203 204 0.695462 TCATGGGCTCTACATGGGCT 60.695 55.000 0.00 0.00 44.42 5.19
204 205 0.184451 CATGGGCTCTACATGGGCTT 59.816 55.000 0.00 0.00 41.46 4.35
205 206 0.184451 ATGGGCTCTACATGGGCTTG 59.816 55.000 0.00 0.00 0.00 4.01
206 207 1.152881 GGGCTCTACATGGGCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
207 208 1.635817 GGGCTCTACATGGGCTTGGA 61.636 60.000 0.00 0.00 0.00 3.53
208 209 0.464554 GGCTCTACATGGGCTTGGAC 60.465 60.000 0.00 0.00 0.00 4.02
209 210 0.253044 GCTCTACATGGGCTTGGACA 59.747 55.000 0.00 0.00 0.00 4.02
210 211 1.340017 GCTCTACATGGGCTTGGACAA 60.340 52.381 0.00 0.00 0.00 3.18
211 212 2.879756 GCTCTACATGGGCTTGGACAAA 60.880 50.000 0.00 0.00 0.00 2.83
212 213 3.624777 CTCTACATGGGCTTGGACAAAT 58.375 45.455 0.00 0.00 0.00 2.32
213 214 4.019174 CTCTACATGGGCTTGGACAAATT 58.981 43.478 0.00 0.00 0.00 1.82
214 215 3.763360 TCTACATGGGCTTGGACAAATTG 59.237 43.478 0.00 0.00 0.00 2.32
215 216 1.624813 ACATGGGCTTGGACAAATTGG 59.375 47.619 0.00 0.00 0.00 3.16
216 217 1.624813 CATGGGCTTGGACAAATTGGT 59.375 47.619 0.00 0.00 0.00 3.67
217 218 1.337118 TGGGCTTGGACAAATTGGTC 58.663 50.000 4.19 4.19 37.06 4.02
218 219 1.337118 GGGCTTGGACAAATTGGTCA 58.663 50.000 14.94 0.00 39.59 4.02
219 220 1.273327 GGGCTTGGACAAATTGGTCAG 59.727 52.381 14.94 5.71 39.59 3.51
220 221 1.337167 GGCTTGGACAAATTGGTCAGC 60.337 52.381 14.94 14.56 39.59 4.26
221 222 1.340889 GCTTGGACAAATTGGTCAGCA 59.659 47.619 16.66 4.55 39.59 4.41
222 223 2.224018 GCTTGGACAAATTGGTCAGCAA 60.224 45.455 16.66 10.92 39.59 3.91
223 224 3.645884 CTTGGACAAATTGGTCAGCAAG 58.354 45.455 14.94 14.43 39.59 4.01
224 225 1.340889 TGGACAAATTGGTCAGCAAGC 59.659 47.619 14.94 0.00 39.59 4.01
225 226 1.340889 GGACAAATTGGTCAGCAAGCA 59.659 47.619 14.94 0.00 39.59 3.91
239 240 3.465122 GCAAGCAATTGCAATTCTTGG 57.535 42.857 34.60 25.87 46.60 3.61
240 241 2.413634 GCAAGCAATTGCAATTCTTGGC 60.414 45.455 34.60 28.60 46.60 4.52
241 242 3.071479 CAAGCAATTGCAATTCTTGGCT 58.929 40.909 31.28 27.58 45.16 4.75
242 243 2.695359 AGCAATTGCAATTCTTGGCTG 58.305 42.857 30.89 14.79 45.16 4.85
243 244 1.129811 GCAATTGCAATTCTTGGCTGC 59.870 47.619 25.36 16.69 41.59 5.25
244 245 2.695359 CAATTGCAATTCTTGGCTGCT 58.305 42.857 21.70 0.00 37.00 4.24
245 246 3.071479 CAATTGCAATTCTTGGCTGCTT 58.929 40.909 21.70 0.00 37.00 3.91
246 247 2.443887 TTGCAATTCTTGGCTGCTTC 57.556 45.000 0.00 0.00 37.00 3.86
247 248 1.330234 TGCAATTCTTGGCTGCTTCA 58.670 45.000 0.00 0.00 37.00 3.02
248 249 1.687660 TGCAATTCTTGGCTGCTTCAA 59.312 42.857 0.00 0.00 37.00 2.69
249 250 2.064014 GCAATTCTTGGCTGCTTCAAC 58.936 47.619 0.00 0.00 33.20 3.18
250 251 2.546373 GCAATTCTTGGCTGCTTCAACA 60.546 45.455 0.00 0.00 33.20 3.33
251 252 3.314553 CAATTCTTGGCTGCTTCAACAG 58.685 45.455 0.00 0.00 40.80 3.16
252 253 2.346766 TTCTTGGCTGCTTCAACAGA 57.653 45.000 0.00 0.00 40.25 3.41
253 254 2.574006 TCTTGGCTGCTTCAACAGAT 57.426 45.000 0.00 0.00 40.25 2.90
254 255 3.701205 TCTTGGCTGCTTCAACAGATA 57.299 42.857 0.00 0.00 40.25 1.98
255 256 4.019792 TCTTGGCTGCTTCAACAGATAA 57.980 40.909 0.00 0.00 40.25 1.75
256 257 4.397420 TCTTGGCTGCTTCAACAGATAAA 58.603 39.130 0.00 0.00 40.25 1.40
257 258 4.456911 TCTTGGCTGCTTCAACAGATAAAG 59.543 41.667 0.00 0.00 40.25 1.85
258 259 3.084039 TGGCTGCTTCAACAGATAAAGG 58.916 45.455 0.00 0.00 40.25 3.11
259 260 3.084786 GGCTGCTTCAACAGATAAAGGT 58.915 45.455 0.00 0.00 40.25 3.50
260 261 4.261801 GGCTGCTTCAACAGATAAAGGTA 58.738 43.478 0.00 0.00 40.25 3.08
261 262 4.700213 GGCTGCTTCAACAGATAAAGGTAA 59.300 41.667 0.00 0.00 40.25 2.85
262 263 5.183140 GGCTGCTTCAACAGATAAAGGTAAA 59.817 40.000 0.00 0.00 40.25 2.01
263 264 6.294508 GGCTGCTTCAACAGATAAAGGTAAAA 60.295 38.462 0.00 0.00 40.25 1.52
264 265 7.315890 GCTGCTTCAACAGATAAAGGTAAAAT 58.684 34.615 0.00 0.00 40.25 1.82
265 266 8.458843 GCTGCTTCAACAGATAAAGGTAAAATA 58.541 33.333 0.00 0.00 40.25 1.40
266 267 9.994432 CTGCTTCAACAGATAAAGGTAAAATAG 57.006 33.333 0.00 0.00 40.25 1.73
267 268 9.733556 TGCTTCAACAGATAAAGGTAAAATAGA 57.266 29.630 0.00 0.00 0.00 1.98
271 272 9.162764 TCAACAGATAAAGGTAAAATAGAGTGC 57.837 33.333 0.00 0.00 0.00 4.40
272 273 8.398665 CAACAGATAAAGGTAAAATAGAGTGCC 58.601 37.037 0.00 0.00 0.00 5.01
273 274 6.761714 ACAGATAAAGGTAAAATAGAGTGCCG 59.238 38.462 0.00 0.00 0.00 5.69
274 275 6.761714 CAGATAAAGGTAAAATAGAGTGCCGT 59.238 38.462 0.00 0.00 0.00 5.68
275 276 6.761714 AGATAAAGGTAAAATAGAGTGCCGTG 59.238 38.462 0.00 0.00 0.00 4.94
276 277 3.975168 AGGTAAAATAGAGTGCCGTGT 57.025 42.857 0.00 0.00 0.00 4.49
317 318 7.529880 CAAGGTAATCTTGCATGGAAATTTC 57.470 36.000 9.83 9.83 45.24 2.17
334 335 0.320374 TTCCTCCTCACGCACGAAAT 59.680 50.000 0.00 0.00 0.00 2.17
335 336 0.320374 TCCTCCTCACGCACGAAATT 59.680 50.000 0.00 0.00 0.00 1.82
343 344 3.358775 TCACGCACGAAATTGAAAAGTG 58.641 40.909 0.00 0.00 36.05 3.16
349 350 3.418619 CACGAAATTGAAAAGTGACGCAG 59.581 43.478 0.00 0.00 35.03 5.18
362 363 4.820897 AGTGACGCAGATTGATCTTGTAA 58.179 39.130 0.00 0.00 34.22 2.41
389 391 4.949856 ACTTGACCAGAACACACATCTTTT 59.050 37.500 0.00 0.00 0.00 2.27
397 399 8.474025 ACCAGAACACACATCTTTTCAAAATAA 58.526 29.630 0.00 0.00 0.00 1.40
418 420 3.550431 CATCTCACCGGCCCCGAT 61.550 66.667 8.54 0.00 42.83 4.18
421 423 1.755393 ATCTCACCGGCCCCGATAAC 61.755 60.000 8.54 0.00 42.83 1.89
422 424 2.684294 TCACCGGCCCCGATAACA 60.684 61.111 8.54 0.00 42.83 2.41
435 437 6.592994 GGCCCCGATAACATAAGAAGTAATAC 59.407 42.308 0.00 0.00 0.00 1.89
504 506 1.753649 CACAATGTGGTTGGGTGTGAA 59.246 47.619 5.29 0.00 41.67 3.18
510 512 1.150536 GGTTGGGTGTGAAGGAGCA 59.849 57.895 0.00 0.00 0.00 4.26
552 755 1.412343 CACAAGAACCAAACCCAAGGG 59.588 52.381 2.91 2.91 42.03 3.95
600 803 3.569701 GGAGACTTGCACCAAAATCAAGA 59.430 43.478 8.03 0.00 39.48 3.02
693 2221 2.724977 TGATCTTGACACCGACTGAC 57.275 50.000 0.00 0.00 0.00 3.51
722 2250 5.184864 TGACCAACCATTAGCAAAACCATAG 59.815 40.000 0.00 0.00 0.00 2.23
739 2267 4.142227 ACCATAGAAGTATCGCACTCGTTT 60.142 41.667 0.00 0.00 36.04 3.60
747 2279 7.972277 AGAAGTATCGCACTCGTTTTATAAAGA 59.028 33.333 0.00 0.00 36.04 2.52
748 2280 8.470040 AAGTATCGCACTCGTTTTATAAAGAA 57.530 30.769 0.00 0.00 36.04 2.52
749 2281 8.470040 AGTATCGCACTCGTTTTATAAAGAAA 57.530 30.769 0.00 0.00 36.96 2.52
750 2282 8.928733 AGTATCGCACTCGTTTTATAAAGAAAA 58.071 29.630 0.00 0.00 36.96 2.29
751 2283 9.532697 GTATCGCACTCGTTTTATAAAGAAAAA 57.467 29.630 0.00 0.00 36.96 1.94
805 2354 3.371087 TGCAGAGCACAAACGTACA 57.629 47.368 0.00 0.00 31.71 2.90
806 2355 1.877637 TGCAGAGCACAAACGTACAT 58.122 45.000 0.00 0.00 31.71 2.29
807 2356 3.033368 TGCAGAGCACAAACGTACATA 57.967 42.857 0.00 0.00 31.71 2.29
808 2357 3.394719 TGCAGAGCACAAACGTACATAA 58.605 40.909 0.00 0.00 31.71 1.90
809 2358 3.810386 TGCAGAGCACAAACGTACATAAA 59.190 39.130 0.00 0.00 31.71 1.40
810 2359 4.454161 TGCAGAGCACAAACGTACATAAAT 59.546 37.500 0.00 0.00 31.71 1.40
811 2360 5.639931 TGCAGAGCACAAACGTACATAAATA 59.360 36.000 0.00 0.00 31.71 1.40
812 2361 6.147985 TGCAGAGCACAAACGTACATAAATAA 59.852 34.615 0.00 0.00 31.71 1.40
813 2362 7.018826 GCAGAGCACAAACGTACATAAATAAA 58.981 34.615 0.00 0.00 0.00 1.40
814 2363 7.535940 GCAGAGCACAAACGTACATAAATAAAA 59.464 33.333 0.00 0.00 0.00 1.52
815 2364 9.388346 CAGAGCACAAACGTACATAAATAAAAA 57.612 29.630 0.00 0.00 0.00 1.94
914 2493 1.500474 CTCCACCTAGGCAATCTCCA 58.500 55.000 9.30 0.00 37.29 3.86
1048 2660 2.358125 CCACGCCGATGTTCCACA 60.358 61.111 0.00 0.00 0.00 4.17
1290 2923 3.013327 TGCAGCAGAGATGGCCCT 61.013 61.111 0.00 0.00 0.00 5.19
1291 2924 2.516460 GCAGCAGAGATGGCCCTG 60.516 66.667 0.00 0.35 0.00 4.45
1343 2976 2.738521 GTGCGCAGAAGAAGCCGA 60.739 61.111 12.22 0.00 0.00 5.54
2067 3701 0.453449 GAAGAAGCAAAGAAGCGGCG 60.453 55.000 0.51 0.51 40.15 6.46
2256 3890 7.801547 ATTAATTGATGCATATGCTAAACGC 57.198 32.000 27.13 11.08 42.66 4.84
2287 3922 5.293560 TGGATGATGCAATGCACATATTTG 58.706 37.500 11.23 0.00 43.04 2.32
2332 3967 4.405680 TGAGTCCCAATGTAGTCACCTATG 59.594 45.833 0.00 0.00 0.00 2.23
2477 4112 4.468765 TTTGTATGCATGGTGATTTGGG 57.531 40.909 10.16 0.00 0.00 4.12
2581 4217 5.385198 ACTATTTGTGCAAAGAAGGAAGGA 58.615 37.500 3.70 0.00 33.32 3.36
2668 4304 5.408604 ACATTTAACTCACTGATTGACGGAC 59.591 40.000 0.00 0.00 0.00 4.79
2719 4355 3.719268 TTGGAGTACTTGATGCCATGT 57.281 42.857 0.00 0.00 35.27 3.21
2853 4489 4.327680 AGAGAATAAAACCTGACAGTGCC 58.672 43.478 0.93 0.00 0.00 5.01
3363 5000 1.523758 ACTTGACGGGAAGAACATGC 58.476 50.000 0.00 0.00 0.00 4.06
3643 5297 8.820933 TGTCGAGAATGTGAAATATGAATCTTC 58.179 33.333 0.00 0.00 0.00 2.87
3675 5329 0.391263 GGTGCGGAAAGGTAGACCAG 60.391 60.000 0.66 0.00 38.89 4.00
3753 5413 7.980099 GGGAAGGTATACACATATAATCTTCCG 59.020 40.741 17.88 0.00 44.80 4.30
4043 5838 3.624205 GCTGGGGTCGGCTATACTCTATA 60.624 52.174 0.00 0.00 41.88 1.31
4287 6087 6.153510 AGAGTGTCTTGCTCTTGTACATATGA 59.846 38.462 10.38 0.00 40.08 2.15
4295 6095 4.752101 GCTCTTGTACATATGATGTGGGTC 59.248 45.833 10.38 0.00 44.60 4.46
4327 6127 3.306472 TTAGGGCACTTCAAACTTGGT 57.694 42.857 0.00 0.00 0.00 3.67
4336 6136 6.183360 GGCACTTCAAACTTGGTGATAGATAC 60.183 42.308 0.00 0.00 32.12 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.151596 TCGTTGTAGGCATTATATAATTGGTGA 58.848 33.333 5.18 0.00 0.00 4.02
6 7 8.911918 TTCGTTGTAGGCATTATATAATTGGT 57.088 30.769 5.18 0.00 0.00 3.67
7 8 9.214957 TCTTCGTTGTAGGCATTATATAATTGG 57.785 33.333 5.18 0.00 0.00 3.16
11 12 9.772973 ACATTCTTCGTTGTAGGCATTATATAA 57.227 29.630 0.00 0.00 0.00 0.98
12 13 9.419297 GACATTCTTCGTTGTAGGCATTATATA 57.581 33.333 0.00 0.00 0.00 0.86
13 14 7.387948 GGACATTCTTCGTTGTAGGCATTATAT 59.612 37.037 0.00 0.00 0.00 0.86
14 15 6.704493 GGACATTCTTCGTTGTAGGCATTATA 59.296 38.462 0.00 0.00 0.00 0.98
15 16 5.527582 GGACATTCTTCGTTGTAGGCATTAT 59.472 40.000 0.00 0.00 0.00 1.28
16 17 4.873827 GGACATTCTTCGTTGTAGGCATTA 59.126 41.667 0.00 0.00 0.00 1.90
17 18 3.689649 GGACATTCTTCGTTGTAGGCATT 59.310 43.478 0.00 0.00 0.00 3.56
18 19 3.270877 GGACATTCTTCGTTGTAGGCAT 58.729 45.455 0.00 0.00 0.00 4.40
19 20 2.614481 GGGACATTCTTCGTTGTAGGCA 60.614 50.000 0.00 0.00 0.00 4.75
20 21 2.007608 GGGACATTCTTCGTTGTAGGC 58.992 52.381 0.00 0.00 0.00 3.93
21 22 3.262420 CAGGGACATTCTTCGTTGTAGG 58.738 50.000 0.00 0.00 0.00 3.18
22 23 3.262420 CCAGGGACATTCTTCGTTGTAG 58.738 50.000 0.00 0.00 0.00 2.74
23 24 2.614481 GCCAGGGACATTCTTCGTTGTA 60.614 50.000 0.00 0.00 0.00 2.41
24 25 1.882352 GCCAGGGACATTCTTCGTTGT 60.882 52.381 0.00 0.00 0.00 3.32
25 26 0.804989 GCCAGGGACATTCTTCGTTG 59.195 55.000 0.00 0.00 0.00 4.10
26 27 0.673644 CGCCAGGGACATTCTTCGTT 60.674 55.000 0.00 0.00 0.00 3.85
27 28 1.079127 CGCCAGGGACATTCTTCGT 60.079 57.895 0.00 0.00 0.00 3.85
28 29 0.673644 AACGCCAGGGACATTCTTCG 60.674 55.000 0.00 0.00 0.00 3.79
29 30 1.087501 GAACGCCAGGGACATTCTTC 58.912 55.000 0.00 0.00 0.00 2.87
30 31 0.400213 TGAACGCCAGGGACATTCTT 59.600 50.000 0.00 0.00 0.00 2.52
31 32 0.400213 TTGAACGCCAGGGACATTCT 59.600 50.000 0.00 0.00 0.00 2.40
32 33 1.068541 GTTTGAACGCCAGGGACATTC 60.069 52.381 0.00 0.00 0.00 2.67
33 34 0.958822 GTTTGAACGCCAGGGACATT 59.041 50.000 0.00 0.00 0.00 2.71
34 35 1.234615 CGTTTGAACGCCAGGGACAT 61.235 55.000 3.12 0.00 46.06 3.06
35 36 1.890041 CGTTTGAACGCCAGGGACA 60.890 57.895 3.12 0.00 46.06 4.02
36 37 2.943653 CGTTTGAACGCCAGGGAC 59.056 61.111 3.12 0.00 46.06 4.46
45 46 3.252215 TGTTGATGGTGGATCGTTTGAAC 59.748 43.478 0.00 0.00 33.17 3.18
46 47 3.481453 TGTTGATGGTGGATCGTTTGAA 58.519 40.909 0.00 0.00 33.17 2.69
47 48 3.073678 CTGTTGATGGTGGATCGTTTGA 58.926 45.455 0.00 0.00 33.17 2.69
48 49 2.813754 ACTGTTGATGGTGGATCGTTTG 59.186 45.455 0.00 0.00 33.17 2.93
49 50 3.074412 GACTGTTGATGGTGGATCGTTT 58.926 45.455 0.00 0.00 33.17 3.60
50 51 2.038426 TGACTGTTGATGGTGGATCGTT 59.962 45.455 0.00 0.00 33.17 3.85
51 52 1.623311 TGACTGTTGATGGTGGATCGT 59.377 47.619 0.00 0.00 33.17 3.73
52 53 2.385013 TGACTGTTGATGGTGGATCG 57.615 50.000 0.00 0.00 33.17 3.69
53 54 3.438087 CACTTGACTGTTGATGGTGGATC 59.562 47.826 0.00 0.00 0.00 3.36
54 55 3.072915 TCACTTGACTGTTGATGGTGGAT 59.927 43.478 0.00 0.00 0.00 3.41
55 56 2.437651 TCACTTGACTGTTGATGGTGGA 59.562 45.455 0.00 0.00 0.00 4.02
56 57 2.849942 TCACTTGACTGTTGATGGTGG 58.150 47.619 0.00 0.00 0.00 4.61
57 58 4.129380 TCTTCACTTGACTGTTGATGGTG 58.871 43.478 0.00 0.00 0.00 4.17
58 59 4.422073 TCTTCACTTGACTGTTGATGGT 57.578 40.909 0.00 0.00 0.00 3.55
59 60 4.379186 GCATCTTCACTTGACTGTTGATGG 60.379 45.833 0.00 0.00 33.03 3.51
60 61 4.454847 AGCATCTTCACTTGACTGTTGATG 59.545 41.667 0.00 0.00 34.82 3.07
61 62 4.649692 AGCATCTTCACTTGACTGTTGAT 58.350 39.130 0.00 0.00 0.00 2.57
62 63 4.077300 AGCATCTTCACTTGACTGTTGA 57.923 40.909 0.00 0.00 0.00 3.18
63 64 4.274214 TCAAGCATCTTCACTTGACTGTTG 59.726 41.667 1.49 0.00 45.48 3.33
64 65 4.454678 TCAAGCATCTTCACTTGACTGTT 58.545 39.130 1.49 0.00 45.48 3.16
65 66 4.077300 TCAAGCATCTTCACTTGACTGT 57.923 40.909 1.49 0.00 45.48 3.55
70 71 4.142469 TGCATGATCAAGCATCTTCACTTG 60.142 41.667 20.99 0.70 43.73 3.16
71 72 4.014406 TGCATGATCAAGCATCTTCACTT 58.986 39.130 20.99 0.00 35.51 3.16
72 73 3.377485 GTGCATGATCAAGCATCTTCACT 59.623 43.478 26.56 0.00 43.44 3.41
73 74 3.377485 AGTGCATGATCAAGCATCTTCAC 59.623 43.478 26.56 13.67 43.44 3.18
74 75 3.617284 AGTGCATGATCAAGCATCTTCA 58.383 40.909 26.56 1.58 43.44 3.02
75 76 4.634184 AAGTGCATGATCAAGCATCTTC 57.366 40.909 26.56 14.68 43.44 2.87
76 77 5.191426 ACTAAGTGCATGATCAAGCATCTT 58.809 37.500 26.56 27.13 43.44 2.40
77 78 4.778579 ACTAAGTGCATGATCAAGCATCT 58.221 39.130 26.56 20.94 43.44 2.90
78 79 4.815308 AGACTAAGTGCATGATCAAGCATC 59.185 41.667 26.56 19.18 43.44 3.91
79 80 4.778579 AGACTAAGTGCATGATCAAGCAT 58.221 39.130 26.56 15.31 43.44 3.79
80 81 4.212143 AGACTAAGTGCATGATCAAGCA 57.788 40.909 20.99 20.99 38.65 3.91
81 82 4.034975 GGAAGACTAAGTGCATGATCAAGC 59.965 45.833 15.84 15.84 0.00 4.01
82 83 5.181009 TGGAAGACTAAGTGCATGATCAAG 58.819 41.667 0.00 0.00 0.00 3.02
83 84 5.046376 TCTGGAAGACTAAGTGCATGATCAA 60.046 40.000 0.00 0.00 38.67 2.57
84 85 4.467438 TCTGGAAGACTAAGTGCATGATCA 59.533 41.667 0.00 0.00 38.67 2.92
85 86 5.016051 TCTGGAAGACTAAGTGCATGATC 57.984 43.478 0.00 0.00 38.67 2.92
101 102 1.724545 TTTCTTCCCTCCGTCTGGAA 58.275 50.000 0.00 0.00 45.87 3.53
102 103 1.831736 GATTTCTTCCCTCCGTCTGGA 59.168 52.381 0.00 0.00 43.88 3.86
103 104 1.471676 CGATTTCTTCCCTCCGTCTGG 60.472 57.143 0.00 0.00 0.00 3.86
104 105 1.471676 CCGATTTCTTCCCTCCGTCTG 60.472 57.143 0.00 0.00 0.00 3.51
105 106 0.824759 CCGATTTCTTCCCTCCGTCT 59.175 55.000 0.00 0.00 0.00 4.18
106 107 0.179081 CCCGATTTCTTCCCTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
107 108 1.623542 CCCCGATTTCTTCCCTCCGT 61.624 60.000 0.00 0.00 0.00 4.69
108 109 1.146263 CCCCGATTTCTTCCCTCCG 59.854 63.158 0.00 0.00 0.00 4.63
109 110 1.141185 ATCCCCGATTTCTTCCCTCC 58.859 55.000 0.00 0.00 0.00 4.30
110 111 1.202818 CCATCCCCGATTTCTTCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
111 112 0.846693 CCATCCCCGATTTCTTCCCT 59.153 55.000 0.00 0.00 0.00 4.20
112 113 0.843984 TCCATCCCCGATTTCTTCCC 59.156 55.000 0.00 0.00 0.00 3.97
113 114 1.211949 TGTCCATCCCCGATTTCTTCC 59.788 52.381 0.00 0.00 0.00 3.46
114 115 2.710096 TGTCCATCCCCGATTTCTTC 57.290 50.000 0.00 0.00 0.00 2.87
115 116 2.357154 CCTTGTCCATCCCCGATTTCTT 60.357 50.000 0.00 0.00 0.00 2.52
116 117 1.212935 CCTTGTCCATCCCCGATTTCT 59.787 52.381 0.00 0.00 0.00 2.52
117 118 1.680338 CCTTGTCCATCCCCGATTTC 58.320 55.000 0.00 0.00 0.00 2.17
118 119 0.395724 GCCTTGTCCATCCCCGATTT 60.396 55.000 0.00 0.00 0.00 2.17
119 120 1.227383 GCCTTGTCCATCCCCGATT 59.773 57.895 0.00 0.00 0.00 3.34
120 121 2.757124 GGCCTTGTCCATCCCCGAT 61.757 63.158 0.00 0.00 0.00 4.18
121 122 3.407967 GGCCTTGTCCATCCCCGA 61.408 66.667 0.00 0.00 0.00 5.14
122 123 3.406595 GAGGCCTTGTCCATCCCCG 62.407 68.421 6.77 0.00 0.00 5.73
123 124 2.597903 GAGGCCTTGTCCATCCCC 59.402 66.667 6.77 0.00 0.00 4.81
124 125 2.597903 GGAGGCCTTGTCCATCCC 59.402 66.667 6.77 0.00 33.84 3.85
125 126 1.700042 ATCGGAGGCCTTGTCCATCC 61.700 60.000 6.77 0.00 33.14 3.51
126 127 0.533755 CATCGGAGGCCTTGTCCATC 60.534 60.000 6.77 0.00 33.14 3.51
127 128 0.982852 TCATCGGAGGCCTTGTCCAT 60.983 55.000 6.77 0.00 33.14 3.41
128 129 1.198094 TTCATCGGAGGCCTTGTCCA 61.198 55.000 6.77 0.00 33.14 4.02
129 130 0.035439 TTTCATCGGAGGCCTTGTCC 60.035 55.000 6.77 2.26 0.00 4.02
130 131 1.821216 TTTTCATCGGAGGCCTTGTC 58.179 50.000 6.77 0.00 0.00 3.18
131 132 2.514458 ATTTTCATCGGAGGCCTTGT 57.486 45.000 6.77 0.00 0.00 3.16
132 133 3.874392 AAATTTTCATCGGAGGCCTTG 57.126 42.857 6.77 0.00 0.00 3.61
133 134 3.578282 ACAAAATTTTCATCGGAGGCCTT 59.422 39.130 6.77 0.00 0.00 4.35
134 135 3.165071 ACAAAATTTTCATCGGAGGCCT 58.835 40.909 3.86 3.86 0.00 5.19
135 136 3.592898 ACAAAATTTTCATCGGAGGCC 57.407 42.857 0.00 0.00 0.00 5.19
136 137 5.310720 ACTACAAAATTTTCATCGGAGGC 57.689 39.130 0.00 0.00 0.00 4.70
137 138 8.338259 CAGATACTACAAAATTTTCATCGGAGG 58.662 37.037 0.00 0.00 0.00 4.30
138 139 7.852945 GCAGATACTACAAAATTTTCATCGGAG 59.147 37.037 0.00 0.00 0.00 4.63
139 140 7.552687 AGCAGATACTACAAAATTTTCATCGGA 59.447 33.333 0.00 0.00 0.00 4.55
140 141 7.641411 CAGCAGATACTACAAAATTTTCATCGG 59.359 37.037 0.00 2.20 0.00 4.18
141 142 7.641411 CCAGCAGATACTACAAAATTTTCATCG 59.359 37.037 0.00 0.00 0.00 3.84
142 143 8.677300 TCCAGCAGATACTACAAAATTTTCATC 58.323 33.333 0.00 0.21 0.00 2.92
143 144 8.462016 GTCCAGCAGATACTACAAAATTTTCAT 58.538 33.333 0.00 0.00 0.00 2.57
144 145 7.665559 AGTCCAGCAGATACTACAAAATTTTCA 59.334 33.333 0.00 0.00 0.00 2.69
145 146 8.045176 AGTCCAGCAGATACTACAAAATTTTC 57.955 34.615 0.00 0.00 0.00 2.29
146 147 8.409358 AAGTCCAGCAGATACTACAAAATTTT 57.591 30.769 0.00 0.00 0.00 1.82
147 148 9.515226 TTAAGTCCAGCAGATACTACAAAATTT 57.485 29.630 0.00 0.00 0.00 1.82
148 149 9.515226 TTTAAGTCCAGCAGATACTACAAAATT 57.485 29.630 0.00 0.00 0.00 1.82
149 150 9.515226 TTTTAAGTCCAGCAGATACTACAAAAT 57.485 29.630 0.00 0.00 0.00 1.82
150 151 8.911918 TTTTAAGTCCAGCAGATACTACAAAA 57.088 30.769 0.00 0.00 0.00 2.44
151 152 8.780249 GTTTTTAAGTCCAGCAGATACTACAAA 58.220 33.333 0.00 0.00 0.00 2.83
152 153 7.117236 CGTTTTTAAGTCCAGCAGATACTACAA 59.883 37.037 0.00 0.00 0.00 2.41
153 154 6.588756 CGTTTTTAAGTCCAGCAGATACTACA 59.411 38.462 0.00 0.00 0.00 2.74
154 155 6.810182 TCGTTTTTAAGTCCAGCAGATACTAC 59.190 38.462 0.00 0.00 0.00 2.73
155 156 6.810182 GTCGTTTTTAAGTCCAGCAGATACTA 59.190 38.462 0.00 0.00 0.00 1.82
156 157 5.638234 GTCGTTTTTAAGTCCAGCAGATACT 59.362 40.000 0.00 0.00 0.00 2.12
157 158 5.407387 TGTCGTTTTTAAGTCCAGCAGATAC 59.593 40.000 0.00 0.00 0.00 2.24
158 159 5.407387 GTGTCGTTTTTAAGTCCAGCAGATA 59.593 40.000 0.00 0.00 0.00 1.98
159 160 4.213482 GTGTCGTTTTTAAGTCCAGCAGAT 59.787 41.667 0.00 0.00 0.00 2.90
160 161 3.558418 GTGTCGTTTTTAAGTCCAGCAGA 59.442 43.478 0.00 0.00 0.00 4.26
161 162 3.311322 TGTGTCGTTTTTAAGTCCAGCAG 59.689 43.478 0.00 0.00 0.00 4.24
162 163 3.271729 TGTGTCGTTTTTAAGTCCAGCA 58.728 40.909 0.00 0.00 0.00 4.41
163 164 3.955771 TGTGTCGTTTTTAAGTCCAGC 57.044 42.857 0.00 0.00 0.00 4.85
164 165 5.666969 TGATGTGTCGTTTTTAAGTCCAG 57.333 39.130 0.00 0.00 0.00 3.86
165 166 5.049060 CCATGATGTGTCGTTTTTAAGTCCA 60.049 40.000 0.00 0.00 0.00 4.02
166 167 5.390613 CCATGATGTGTCGTTTTTAAGTCC 58.609 41.667 0.00 0.00 0.00 3.85
167 168 5.390613 CCCATGATGTGTCGTTTTTAAGTC 58.609 41.667 0.00 0.00 0.00 3.01
168 169 4.320935 GCCCATGATGTGTCGTTTTTAAGT 60.321 41.667 0.00 0.00 0.00 2.24
169 170 4.082787 AGCCCATGATGTGTCGTTTTTAAG 60.083 41.667 0.00 0.00 0.00 1.85
170 171 3.823873 AGCCCATGATGTGTCGTTTTTAA 59.176 39.130 0.00 0.00 0.00 1.52
171 172 3.417101 AGCCCATGATGTGTCGTTTTTA 58.583 40.909 0.00 0.00 0.00 1.52
172 173 2.228822 GAGCCCATGATGTGTCGTTTTT 59.771 45.455 0.00 0.00 0.00 1.94
173 174 1.812571 GAGCCCATGATGTGTCGTTTT 59.187 47.619 0.00 0.00 0.00 2.43
174 175 1.003580 AGAGCCCATGATGTGTCGTTT 59.996 47.619 0.00 0.00 0.00 3.60
175 176 0.615331 AGAGCCCATGATGTGTCGTT 59.385 50.000 0.00 0.00 0.00 3.85
176 177 1.137086 GTAGAGCCCATGATGTGTCGT 59.863 52.381 0.00 0.00 0.00 4.34
177 178 1.136891 TGTAGAGCCCATGATGTGTCG 59.863 52.381 0.00 0.00 0.00 4.35
178 179 2.988010 TGTAGAGCCCATGATGTGTC 57.012 50.000 0.00 0.00 0.00 3.67
179 180 2.158711 CCATGTAGAGCCCATGATGTGT 60.159 50.000 0.00 0.00 41.78 3.72
180 181 2.501261 CCATGTAGAGCCCATGATGTG 58.499 52.381 0.00 0.00 41.78 3.21
181 182 1.422781 CCCATGTAGAGCCCATGATGT 59.577 52.381 0.00 0.00 41.78 3.06
182 183 1.885359 GCCCATGTAGAGCCCATGATG 60.885 57.143 0.00 0.00 41.78 3.07
183 184 0.403271 GCCCATGTAGAGCCCATGAT 59.597 55.000 0.00 0.00 41.78 2.45
184 185 0.695462 AGCCCATGTAGAGCCCATGA 60.695 55.000 0.00 0.00 41.78 3.07
185 186 0.184451 AAGCCCATGTAGAGCCCATG 59.816 55.000 0.00 0.00 39.50 3.66
186 187 0.184451 CAAGCCCATGTAGAGCCCAT 59.816 55.000 0.00 0.00 0.00 4.00
187 188 1.609239 CAAGCCCATGTAGAGCCCA 59.391 57.895 0.00 0.00 0.00 5.36
188 189 1.152881 CCAAGCCCATGTAGAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
189 190 0.464554 GTCCAAGCCCATGTAGAGCC 60.465 60.000 0.00 0.00 0.00 4.70
190 191 0.253044 TGTCCAAGCCCATGTAGAGC 59.747 55.000 0.00 0.00 0.00 4.09
191 192 2.787473 TTGTCCAAGCCCATGTAGAG 57.213 50.000 0.00 0.00 0.00 2.43
192 193 3.737559 ATTTGTCCAAGCCCATGTAGA 57.262 42.857 0.00 0.00 0.00 2.59
193 194 3.119029 CCAATTTGTCCAAGCCCATGTAG 60.119 47.826 0.00 0.00 0.00 2.74
194 195 2.830923 CCAATTTGTCCAAGCCCATGTA 59.169 45.455 0.00 0.00 0.00 2.29
195 196 1.624813 CCAATTTGTCCAAGCCCATGT 59.375 47.619 0.00 0.00 0.00 3.21
196 197 1.624813 ACCAATTTGTCCAAGCCCATG 59.375 47.619 0.00 0.00 0.00 3.66
197 198 1.901833 GACCAATTTGTCCAAGCCCAT 59.098 47.619 0.00 0.00 0.00 4.00
198 199 1.337118 GACCAATTTGTCCAAGCCCA 58.663 50.000 0.00 0.00 0.00 5.36
199 200 1.273327 CTGACCAATTTGTCCAAGCCC 59.727 52.381 7.17 0.00 34.25 5.19
200 201 1.337167 GCTGACCAATTTGTCCAAGCC 60.337 52.381 7.17 0.00 31.52 4.35
201 202 1.340889 TGCTGACCAATTTGTCCAAGC 59.659 47.619 12.52 12.52 35.78 4.01
202 203 3.645884 CTTGCTGACCAATTTGTCCAAG 58.354 45.455 7.17 9.77 34.25 3.61
203 204 2.224018 GCTTGCTGACCAATTTGTCCAA 60.224 45.455 7.17 4.67 34.25 3.53
204 205 1.340889 GCTTGCTGACCAATTTGTCCA 59.659 47.619 7.17 0.00 34.25 4.02
205 206 1.340889 TGCTTGCTGACCAATTTGTCC 59.659 47.619 7.17 0.00 34.25 4.02
206 207 2.798976 TGCTTGCTGACCAATTTGTC 57.201 45.000 2.74 2.74 35.77 3.18
207 208 3.756933 ATTGCTTGCTGACCAATTTGT 57.243 38.095 0.00 0.00 31.91 2.83
208 209 4.398549 CAATTGCTTGCTGACCAATTTG 57.601 40.909 0.00 0.00 37.14 2.32
229 230 6.577957 TCTGTTGAAGCAGCCAAGAATTGC 62.578 45.833 0.00 0.00 38.84 3.56
230 231 3.005050 TCTGTTGAAGCAGCCAAGAATTG 59.995 43.478 0.00 0.00 39.41 2.32
231 232 3.225104 TCTGTTGAAGCAGCCAAGAATT 58.775 40.909 0.00 0.00 36.49 2.17
232 233 2.867624 TCTGTTGAAGCAGCCAAGAAT 58.132 42.857 0.00 0.00 36.49 2.40
233 234 2.346766 TCTGTTGAAGCAGCCAAGAA 57.653 45.000 0.00 0.00 36.49 2.52
234 235 2.574006 ATCTGTTGAAGCAGCCAAGA 57.426 45.000 0.00 0.00 36.49 3.02
235 236 4.380233 CCTTTATCTGTTGAAGCAGCCAAG 60.380 45.833 0.00 0.00 36.49 3.61
236 237 3.507233 CCTTTATCTGTTGAAGCAGCCAA 59.493 43.478 0.00 0.00 36.49 4.52
237 238 3.084039 CCTTTATCTGTTGAAGCAGCCA 58.916 45.455 0.00 0.00 36.49 4.75
238 239 3.084786 ACCTTTATCTGTTGAAGCAGCC 58.915 45.455 0.00 0.00 36.49 4.85
239 240 5.880054 TTACCTTTATCTGTTGAAGCAGC 57.120 39.130 0.00 0.00 36.49 5.25
240 241 9.994432 CTATTTTACCTTTATCTGTTGAAGCAG 57.006 33.333 0.00 0.00 37.81 4.24
241 242 9.733556 TCTATTTTACCTTTATCTGTTGAAGCA 57.266 29.630 0.00 0.00 0.00 3.91
245 246 9.162764 GCACTCTATTTTACCTTTATCTGTTGA 57.837 33.333 0.00 0.00 0.00 3.18
246 247 8.398665 GGCACTCTATTTTACCTTTATCTGTTG 58.601 37.037 0.00 0.00 0.00 3.33
247 248 7.280205 CGGCACTCTATTTTACCTTTATCTGTT 59.720 37.037 0.00 0.00 0.00 3.16
248 249 6.761714 CGGCACTCTATTTTACCTTTATCTGT 59.238 38.462 0.00 0.00 0.00 3.41
249 250 6.761714 ACGGCACTCTATTTTACCTTTATCTG 59.238 38.462 0.00 0.00 0.00 2.90
250 251 6.761714 CACGGCACTCTATTTTACCTTTATCT 59.238 38.462 0.00 0.00 0.00 1.98
251 252 6.537660 ACACGGCACTCTATTTTACCTTTATC 59.462 38.462 0.00 0.00 0.00 1.75
252 253 6.315393 CACACGGCACTCTATTTTACCTTTAT 59.685 38.462 0.00 0.00 0.00 1.40
253 254 5.640357 CACACGGCACTCTATTTTACCTTTA 59.360 40.000 0.00 0.00 0.00 1.85
254 255 4.454504 CACACGGCACTCTATTTTACCTTT 59.545 41.667 0.00 0.00 0.00 3.11
255 256 4.000988 CACACGGCACTCTATTTTACCTT 58.999 43.478 0.00 0.00 0.00 3.50
256 257 3.596214 CACACGGCACTCTATTTTACCT 58.404 45.455 0.00 0.00 0.00 3.08
257 258 2.095372 GCACACGGCACTCTATTTTACC 59.905 50.000 0.00 0.00 43.97 2.85
258 259 3.385079 GCACACGGCACTCTATTTTAC 57.615 47.619 0.00 0.00 43.97 2.01
270 271 2.897350 GATAGCCCTGCACACGGC 60.897 66.667 6.60 6.60 46.09 5.68
271 272 0.882042 GATGATAGCCCTGCACACGG 60.882 60.000 0.00 0.00 0.00 4.94
272 273 0.179076 TGATGATAGCCCTGCACACG 60.179 55.000 0.00 0.00 0.00 4.49
273 274 1.672881 GTTGATGATAGCCCTGCACAC 59.327 52.381 0.00 0.00 0.00 3.82
274 275 1.281577 TGTTGATGATAGCCCTGCACA 59.718 47.619 0.00 0.00 0.00 4.57
275 276 2.042686 TGTTGATGATAGCCCTGCAC 57.957 50.000 0.00 0.00 0.00 4.57
276 277 2.646930 CTTGTTGATGATAGCCCTGCA 58.353 47.619 0.00 0.00 0.00 4.41
317 318 0.443869 CAATTTCGTGCGTGAGGAGG 59.556 55.000 0.00 0.00 38.75 4.30
326 327 2.151172 GCGTCACTTTTCAATTTCGTGC 59.849 45.455 0.00 0.00 0.00 5.34
334 335 4.756642 AGATCAATCTGCGTCACTTTTCAA 59.243 37.500 0.00 0.00 35.42 2.69
335 336 4.318332 AGATCAATCTGCGTCACTTTTCA 58.682 39.130 0.00 0.00 35.42 2.69
343 344 4.811024 TCCATTACAAGATCAATCTGCGTC 59.189 41.667 0.00 0.00 37.19 5.19
349 350 6.599244 TGGTCAAGTCCATTACAAGATCAATC 59.401 38.462 0.00 0.00 31.96 2.67
362 363 2.172505 TGTGTGTTCTGGTCAAGTCCAT 59.827 45.455 0.00 0.00 36.84 3.41
389 391 3.694072 CCGGTGAGATGGCTTTATTTTGA 59.306 43.478 0.00 0.00 0.00 2.69
435 437 8.593492 TTATCTCTGATGAACATTTATCGTGG 57.407 34.615 0.00 0.00 0.00 4.94
448 450 4.811024 GGCGTGACATTTTATCTCTGATGA 59.189 41.667 0.00 0.00 0.00 2.92
504 506 2.814805 ACTATTTGCATGGTGCTCCT 57.185 45.000 6.34 0.00 45.31 3.69
510 512 7.517320 TGTGGAATAGATACTATTTGCATGGT 58.483 34.615 5.66 0.00 0.00 3.55
552 755 9.046296 CACAAGTTCATCTATAAACAGGATACC 57.954 37.037 0.00 0.00 37.17 2.73
600 803 4.844349 AGCATGACAACCCTACAATAGT 57.156 40.909 0.00 0.00 0.00 2.12
722 2250 8.112099 TCTTTATAAAACGAGTGCGATACTTC 57.888 34.615 0.00 0.00 40.53 3.01
752 2284 4.082895 GCAGATGAGATGAGTGTGCTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
753 2285 3.439476 GCAGATGAGATGAGTGTGCTTTT 59.561 43.478 0.00 0.00 0.00 2.27
757 2289 2.019948 TGCAGATGAGATGAGTGTGC 57.980 50.000 0.00 0.00 33.27 4.57
813 2362 6.818644 GTGCTCCTTCCTTTCTTTTTCTTTTT 59.181 34.615 0.00 0.00 0.00 1.94
814 2363 6.155221 AGTGCTCCTTCCTTTCTTTTTCTTTT 59.845 34.615 0.00 0.00 0.00 2.27
815 2364 5.658634 AGTGCTCCTTCCTTTCTTTTTCTTT 59.341 36.000 0.00 0.00 0.00 2.52
816 2365 5.068329 CAGTGCTCCTTCCTTTCTTTTTCTT 59.932 40.000 0.00 0.00 0.00 2.52
817 2366 4.582240 CAGTGCTCCTTCCTTTCTTTTTCT 59.418 41.667 0.00 0.00 0.00 2.52
818 2367 4.794329 GCAGTGCTCCTTCCTTTCTTTTTC 60.794 45.833 8.18 0.00 0.00 2.29
819 2368 3.068732 GCAGTGCTCCTTCCTTTCTTTTT 59.931 43.478 8.18 0.00 0.00 1.94
820 2369 2.625314 GCAGTGCTCCTTCCTTTCTTTT 59.375 45.455 8.18 0.00 0.00 2.27
821 2370 2.234143 GCAGTGCTCCTTCCTTTCTTT 58.766 47.619 8.18 0.00 0.00 2.52
822 2371 1.879796 CGCAGTGCTCCTTCCTTTCTT 60.880 52.381 14.33 0.00 0.00 2.52
823 2372 0.321122 CGCAGTGCTCCTTCCTTTCT 60.321 55.000 14.33 0.00 0.00 2.52
824 2373 0.603975 ACGCAGTGCTCCTTCCTTTC 60.604 55.000 14.33 0.00 42.51 2.62
825 2374 0.685097 TACGCAGTGCTCCTTCCTTT 59.315 50.000 14.33 0.00 45.73 3.11
826 2375 0.037232 GTACGCAGTGCTCCTTCCTT 60.037 55.000 14.33 0.00 45.73 3.36
827 2376 1.592223 GTACGCAGTGCTCCTTCCT 59.408 57.895 14.33 0.00 45.73 3.36
828 2377 1.805945 CGTACGCAGTGCTCCTTCC 60.806 63.158 14.33 0.00 45.73 3.46
829 2378 0.388134 TTCGTACGCAGTGCTCCTTC 60.388 55.000 14.33 0.00 45.73 3.46
835 2384 0.511221 AATGTGTTCGTACGCAGTGC 59.489 50.000 11.24 4.58 46.98 4.40
1144 2775 2.925170 AGGGCTGAGCGTTCCAGT 60.925 61.111 0.00 0.00 34.29 4.00
1269 2902 2.516460 CCATCTCTGCTGCAGGCC 60.516 66.667 27.79 0.00 40.92 5.19
1330 2963 2.815647 CGGGTCGGCTTCTTCTGC 60.816 66.667 0.00 0.00 0.00 4.26
1422 3055 1.752694 TGCGAATAAGGCAAGCCCC 60.753 57.895 7.62 0.00 37.49 5.80
1834 3468 0.322816 GCCTTGTCCATTGCTCTGGA 60.323 55.000 3.97 3.97 43.09 3.86
2067 3701 7.725251 TGGCAGTCATGGAATAAAATATTTCC 58.275 34.615 0.10 0.00 41.51 3.13
2256 3890 3.833442 CATTGCATCATCCATCATTCCG 58.167 45.455 0.00 0.00 0.00 4.30
2287 3922 0.735978 CCTTTTTCCCGCATTTCCGC 60.736 55.000 0.00 0.00 0.00 5.54
2332 3967 0.462047 AGTGCGGCTATTACAGTGGC 60.462 55.000 0.00 0.00 0.00 5.01
2477 4112 5.995897 TCAGAAACTAACTCCTTGGCTTTAC 59.004 40.000 0.00 0.00 0.00 2.01
2581 4217 8.929260 TCAAAGATATCTTGTGCATCCATAAT 57.071 30.769 18.61 0.00 36.12 1.28
2618 4254 3.321039 ACATCAGGCTTCCCATCTATGA 58.679 45.455 0.00 0.00 0.00 2.15
2719 4355 2.260247 GCTCAATGCCAGCTGACAA 58.740 52.632 17.39 0.00 33.75 3.18
2853 4489 5.434408 CCATCCAGTATGATCCCATATGTG 58.566 45.833 1.24 0.00 39.69 3.21
2862 4498 4.273480 CGAAACAACCCATCCAGTATGATC 59.727 45.833 0.00 0.00 39.69 2.92
2925 4561 5.462068 CACTGTTATTCCGCTTTCGATCATA 59.538 40.000 0.00 0.00 38.10 2.15
3643 5297 2.432444 TCCGCACCCAACAAAGATTAG 58.568 47.619 0.00 0.00 0.00 1.73
3675 5329 5.391312 AAATTTCAACCAGCATGACTACC 57.609 39.130 0.00 0.00 39.69 3.18
3753 5413 2.338500 AGTACTTACTGCGCTTCTTGC 58.662 47.619 9.73 0.00 34.72 4.01
3938 5723 5.945310 AGACACATTTGCCCTGACATATAT 58.055 37.500 0.00 0.00 0.00 0.86
4030 5825 4.008330 TGACAGCGGTATAGAGTATAGCC 58.992 47.826 0.00 0.00 36.14 3.93
4221 6021 4.967442 GGTAACTTCTTCCCTACCACCTAT 59.033 45.833 0.00 0.00 34.99 2.57
4287 6087 5.480772 CCTAAACTATATCTCCGACCCACAT 59.519 44.000 0.00 0.00 0.00 3.21
4295 6095 5.010719 TGAAGTGCCCTAAACTATATCTCCG 59.989 44.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.