Multiple sequence alignment - TraesCS1B01G074200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G074200 chr1B 100.000 2432 0 0 1 2432 57704874 57707305 0.000000e+00 4492.0
1 TraesCS1B01G074200 chr1B 88.719 523 38 11 913 1433 57643554 57644057 9.550000e-174 619.0
2 TraesCS1B01G074200 chr1B 88.337 523 38 4 913 1433 57682560 57683061 7.440000e-170 606.0
3 TraesCS1B01G074200 chr1B 86.180 521 32 7 913 1433 57686347 57686827 5.960000e-146 527.0
4 TraesCS1B01G074200 chr1B 85.171 526 42 18 913 1433 57629757 57630251 7.760000e-140 507.0
5 TraesCS1B01G074200 chr1B 100.000 173 0 0 133 305 638724538 638724710 1.080000e-83 320.0
6 TraesCS1B01G074200 chr1B 100.000 132 0 0 1 132 672547577 672547446 6.720000e-61 244.0
7 TraesCS1B01G074200 chr1D 92.685 998 58 13 913 1903 37887737 37888726 0.000000e+00 1424.0
8 TraesCS1B01G074200 chr1D 93.046 302 18 3 1960 2258 37888945 37889246 2.870000e-119 438.0
9 TraesCS1B01G074200 chr1D 100.000 132 0 0 1 132 212441557 212441688 6.720000e-61 244.0
10 TraesCS1B01G074200 chr1D 92.784 97 7 0 2335 2431 37889243 37889339 9.070000e-30 141.0
11 TraesCS1B01G074200 chr1D 96.875 32 0 1 873 904 431713186 431713156 4.000000e-03 52.8
12 TraesCS1B01G074200 chr1A 90.561 731 54 11 914 1643 36823825 36824541 0.000000e+00 953.0
13 TraesCS1B01G074200 chr1A 90.299 536 33 8 913 1433 36794150 36794681 0.000000e+00 684.0
14 TraesCS1B01G074200 chr1A 88.235 408 28 7 1635 2024 36825649 36826054 1.020000e-128 470.0
15 TraesCS1B01G074200 chr1A 89.695 262 18 6 2174 2428 36826057 36826316 2.330000e-85 326.0
16 TraesCS1B01G074200 chr6A 89.465 617 43 9 305 905 609311091 609311701 0.000000e+00 760.0
17 TraesCS1B01G074200 chrUn 100.000 173 0 0 133 305 221551753 221551925 1.080000e-83 320.0
18 TraesCS1B01G074200 chrUn 100.000 173 0 0 133 305 229485359 229485531 1.080000e-83 320.0
19 TraesCS1B01G074200 chr2B 100.000 173 0 0 133 305 1458514 1458342 1.080000e-83 320.0
20 TraesCS1B01G074200 chr2B 99.422 173 1 0 133 305 357199664 357199492 5.050000e-82 315.0
21 TraesCS1B01G074200 chr2B 100.000 132 0 0 1 132 391151105 391150974 6.720000e-61 244.0
22 TraesCS1B01G074200 chr2B 100.000 132 0 0 1 132 391218941 391219072 6.720000e-61 244.0
23 TraesCS1B01G074200 chr7A 99.422 173 1 0 133 305 4922216 4922044 5.050000e-82 315.0
24 TraesCS1B01G074200 chr5B 99.422 173 1 0 133 305 127803241 127803413 5.050000e-82 315.0
25 TraesCS1B01G074200 chr3B 99.422 173 1 0 133 305 173885438 173885266 5.050000e-82 315.0
26 TraesCS1B01G074200 chr2D 99.422 173 1 0 133 305 429475085 429475257 5.050000e-82 315.0
27 TraesCS1B01G074200 chr2D 99.242 132 1 0 1 132 291695224 291695355 3.130000e-59 239.0
28 TraesCS1B01G074200 chr6B 100.000 132 0 0 1 132 596595555 596595686 6.720000e-61 244.0
29 TraesCS1B01G074200 chr6B 99.242 132 1 0 1 132 294184874 294185005 3.130000e-59 239.0
30 TraesCS1B01G074200 chr4B 100.000 132 0 0 1 132 495574251 495574120 6.720000e-61 244.0
31 TraesCS1B01G074200 chr4B 99.242 132 1 0 1 132 495551258 495551127 3.130000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G074200 chr1B 57704874 57707305 2431 False 4492.000000 4492 100.000000 1 2432 1 chr1B.!!$F3 2431
1 TraesCS1B01G074200 chr1B 57643554 57644057 503 False 619.000000 619 88.719000 913 1433 1 chr1B.!!$F2 520
2 TraesCS1B01G074200 chr1B 57682560 57686827 4267 False 566.500000 606 87.258500 913 1433 2 chr1B.!!$F5 520
3 TraesCS1B01G074200 chr1D 37887737 37889339 1602 False 667.666667 1424 92.838333 913 2431 3 chr1D.!!$F2 1518
4 TraesCS1B01G074200 chr1A 36794150 36794681 531 False 684.000000 684 90.299000 913 1433 1 chr1A.!!$F1 520
5 TraesCS1B01G074200 chr1A 36823825 36826316 2491 False 583.000000 953 89.497000 914 2428 3 chr1A.!!$F2 1514
6 TraesCS1B01G074200 chr6A 609311091 609311701 610 False 760.000000 760 89.465000 305 905 1 chr6A.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.104725 AGGCCCATAAGAGGAGGGAG 60.105 60.0 0.0 0.0 45.8 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 3566 0.035317 AGGAGCACGAGACATGCAAA 59.965 50.0 0.0 0.0 45.92 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.438761 TTCACTTTGAAAGGAAAGCTAGC 57.561 39.130 6.62 6.62 36.55 3.42
25 26 4.718961 TCACTTTGAAAGGAAAGCTAGCT 58.281 39.130 12.68 12.68 36.55 3.32
26 27 5.865085 TCACTTTGAAAGGAAAGCTAGCTA 58.135 37.500 19.70 0.00 36.55 3.32
27 28 6.476378 TCACTTTGAAAGGAAAGCTAGCTAT 58.524 36.000 19.70 5.60 36.55 2.97
28 29 7.620880 TCACTTTGAAAGGAAAGCTAGCTATA 58.379 34.615 19.70 0.00 36.55 1.31
29 30 8.267894 TCACTTTGAAAGGAAAGCTAGCTATAT 58.732 33.333 19.70 7.54 36.55 0.86
30 31 8.341173 CACTTTGAAAGGAAAGCTAGCTATATG 58.659 37.037 19.70 1.80 36.55 1.78
31 32 8.267894 ACTTTGAAAGGAAAGCTAGCTATATGA 58.732 33.333 19.70 0.00 36.55 2.15
32 33 8.668510 TTTGAAAGGAAAGCTAGCTATATGAG 57.331 34.615 19.70 0.00 0.00 2.90
33 34 7.603180 TGAAAGGAAAGCTAGCTATATGAGA 57.397 36.000 19.70 0.00 0.00 3.27
34 35 8.200024 TGAAAGGAAAGCTAGCTATATGAGAT 57.800 34.615 19.70 0.00 0.00 2.75
35 36 8.310382 TGAAAGGAAAGCTAGCTATATGAGATC 58.690 37.037 19.70 10.46 0.00 2.75
36 37 6.449635 AGGAAAGCTAGCTATATGAGATCG 57.550 41.667 19.70 0.00 0.00 3.69
37 38 6.184068 AGGAAAGCTAGCTATATGAGATCGA 58.816 40.000 19.70 0.00 0.00 3.59
38 39 6.661377 AGGAAAGCTAGCTATATGAGATCGAA 59.339 38.462 19.70 0.00 0.00 3.71
39 40 7.177568 AGGAAAGCTAGCTATATGAGATCGAAA 59.822 37.037 19.70 0.00 0.00 3.46
40 41 7.978975 GGAAAGCTAGCTATATGAGATCGAAAT 59.021 37.037 19.70 0.00 0.00 2.17
41 42 8.925161 AAAGCTAGCTATATGAGATCGAAATC 57.075 34.615 19.70 0.00 0.00 2.17
42 43 7.637631 AGCTAGCTATATGAGATCGAAATCA 57.362 36.000 17.69 5.51 34.07 2.57
43 44 7.479980 AGCTAGCTATATGAGATCGAAATCAC 58.520 38.462 17.69 0.00 34.07 3.06
44 45 7.339212 AGCTAGCTATATGAGATCGAAATCACT 59.661 37.037 17.69 1.58 34.07 3.41
45 46 7.643764 GCTAGCTATATGAGATCGAAATCACTC 59.356 40.741 7.70 3.31 34.07 3.51
46 47 7.701539 AGCTATATGAGATCGAAATCACTCT 57.298 36.000 5.18 0.00 34.07 3.24
47 48 8.800370 AGCTATATGAGATCGAAATCACTCTA 57.200 34.615 5.18 0.00 34.07 2.43
48 49 9.407380 AGCTATATGAGATCGAAATCACTCTAT 57.593 33.333 5.18 3.53 34.07 1.98
49 50 9.663904 GCTATATGAGATCGAAATCACTCTATC 57.336 37.037 5.18 0.00 34.07 2.08
53 54 7.123160 TGAGATCGAAATCACTCTATCTACG 57.877 40.000 0.00 0.00 30.28 3.51
54 55 6.929606 TGAGATCGAAATCACTCTATCTACGA 59.070 38.462 0.00 0.00 30.28 3.43
55 56 7.604545 TGAGATCGAAATCACTCTATCTACGAT 59.395 37.037 0.00 0.00 39.88 3.73
56 57 9.089601 GAGATCGAAATCACTCTATCTACGATA 57.910 37.037 0.00 0.00 37.91 2.92
57 58 9.607988 AGATCGAAATCACTCTATCTACGATAT 57.392 33.333 0.00 0.00 37.91 1.63
60 61 9.216117 TCGAAATCACTCTATCTACGATATTCA 57.784 33.333 0.00 0.00 0.00 2.57
61 62 9.995957 CGAAATCACTCTATCTACGATATTCAT 57.004 33.333 0.00 0.00 0.00 2.57
64 65 9.579768 AATCACTCTATCTACGATATTCATTGC 57.420 33.333 0.00 0.00 0.00 3.56
65 66 8.110860 TCACTCTATCTACGATATTCATTGCA 57.889 34.615 0.00 0.00 0.00 4.08
66 67 8.023706 TCACTCTATCTACGATATTCATTGCAC 58.976 37.037 0.00 0.00 0.00 4.57
67 68 7.274468 CACTCTATCTACGATATTCATTGCACC 59.726 40.741 0.00 0.00 0.00 5.01
68 69 7.039714 ACTCTATCTACGATATTCATTGCACCA 60.040 37.037 0.00 0.00 0.00 4.17
69 70 7.840931 TCTATCTACGATATTCATTGCACCAT 58.159 34.615 0.00 0.00 0.00 3.55
70 71 6.732531 ATCTACGATATTCATTGCACCATG 57.267 37.500 0.00 0.00 0.00 3.66
71 72 5.852827 TCTACGATATTCATTGCACCATGA 58.147 37.500 0.00 0.00 0.00 3.07
72 73 6.466812 TCTACGATATTCATTGCACCATGAT 58.533 36.000 1.98 0.00 0.00 2.45
73 74 6.936335 TCTACGATATTCATTGCACCATGATT 59.064 34.615 1.98 2.20 0.00 2.57
74 75 5.765176 ACGATATTCATTGCACCATGATTG 58.235 37.500 1.98 0.00 0.00 2.67
75 76 5.532032 ACGATATTCATTGCACCATGATTGA 59.468 36.000 1.98 0.00 0.00 2.57
76 77 6.039605 ACGATATTCATTGCACCATGATTGAA 59.960 34.615 1.98 0.00 0.00 2.69
77 78 6.581166 CGATATTCATTGCACCATGATTGAAG 59.419 38.462 1.98 0.00 0.00 3.02
78 79 4.459390 TTCATTGCACCATGATTGAAGG 57.541 40.909 1.98 0.00 0.00 3.46
79 80 3.699413 TCATTGCACCATGATTGAAGGA 58.301 40.909 0.00 0.00 0.00 3.36
80 81 3.444742 TCATTGCACCATGATTGAAGGAC 59.555 43.478 0.00 0.00 0.00 3.85
81 82 2.583024 TGCACCATGATTGAAGGACA 57.417 45.000 0.00 0.00 0.00 4.02
82 83 2.874014 TGCACCATGATTGAAGGACAA 58.126 42.857 0.00 0.00 42.95 3.18
89 90 5.472564 CCATGATTGAAGGACAATGAGGGG 61.473 50.000 0.00 0.00 45.33 4.79
90 91 2.149973 ATTGAAGGACAATGAGGGGC 57.850 50.000 0.00 0.00 45.99 5.80
91 92 0.776810 TTGAAGGACAATGAGGGGCA 59.223 50.000 0.00 0.00 33.18 5.36
92 93 0.329261 TGAAGGACAATGAGGGGCAG 59.671 55.000 0.00 0.00 0.00 4.85
93 94 0.394899 GAAGGACAATGAGGGGCAGG 60.395 60.000 0.00 0.00 0.00 4.85
94 95 1.142688 AAGGACAATGAGGGGCAGGT 61.143 55.000 0.00 0.00 0.00 4.00
95 96 1.142688 AGGACAATGAGGGGCAGGTT 61.143 55.000 0.00 0.00 0.00 3.50
96 97 0.623723 GGACAATGAGGGGCAGGTTA 59.376 55.000 0.00 0.00 0.00 2.85
97 98 1.215423 GGACAATGAGGGGCAGGTTAT 59.785 52.381 0.00 0.00 0.00 1.89
98 99 2.441750 GGACAATGAGGGGCAGGTTATA 59.558 50.000 0.00 0.00 0.00 0.98
99 100 3.074538 GGACAATGAGGGGCAGGTTATAT 59.925 47.826 0.00 0.00 0.00 0.86
100 101 4.447762 GGACAATGAGGGGCAGGTTATATT 60.448 45.833 0.00 0.00 0.00 1.28
101 102 4.729868 ACAATGAGGGGCAGGTTATATTC 58.270 43.478 0.00 0.00 0.00 1.75
102 103 4.082125 CAATGAGGGGCAGGTTATATTCC 58.918 47.826 0.00 0.00 0.00 3.01
103 104 2.062636 TGAGGGGCAGGTTATATTCCC 58.937 52.381 0.00 0.00 36.25 3.97
104 105 2.349445 GAGGGGCAGGTTATATTCCCT 58.651 52.381 0.00 0.00 46.49 4.20
105 106 2.716969 GAGGGGCAGGTTATATTCCCTT 59.283 50.000 0.00 0.00 44.11 3.95
106 107 3.139330 AGGGGCAGGTTATATTCCCTTT 58.861 45.455 0.00 0.00 41.62 3.11
107 108 3.140332 AGGGGCAGGTTATATTCCCTTTC 59.860 47.826 0.00 0.00 41.62 2.62
108 109 3.140332 GGGGCAGGTTATATTCCCTTTCT 59.860 47.826 0.00 0.00 37.16 2.52
109 110 4.387550 GGGGCAGGTTATATTCCCTTTCTT 60.388 45.833 0.00 0.00 37.16 2.52
110 111 4.827835 GGGCAGGTTATATTCCCTTTCTTC 59.172 45.833 0.00 0.00 34.19 2.87
111 112 5.399152 GGGCAGGTTATATTCCCTTTCTTCT 60.399 44.000 0.00 0.00 34.19 2.85
112 113 5.532779 GGCAGGTTATATTCCCTTTCTTCTG 59.467 44.000 0.00 0.00 0.00 3.02
113 114 6.357367 GCAGGTTATATTCCCTTTCTTCTGA 58.643 40.000 0.00 0.00 0.00 3.27
114 115 7.001073 GCAGGTTATATTCCCTTTCTTCTGAT 58.999 38.462 0.00 0.00 0.00 2.90
115 116 7.174080 GCAGGTTATATTCCCTTTCTTCTGATC 59.826 40.741 0.00 0.00 0.00 2.92
116 117 7.386299 CAGGTTATATTCCCTTTCTTCTGATCG 59.614 40.741 0.00 0.00 0.00 3.69
117 118 7.290248 AGGTTATATTCCCTTTCTTCTGATCGA 59.710 37.037 0.00 0.00 0.00 3.59
118 119 8.097662 GGTTATATTCCCTTTCTTCTGATCGAT 58.902 37.037 0.00 0.00 0.00 3.59
119 120 9.495572 GTTATATTCCCTTTCTTCTGATCGATT 57.504 33.333 0.00 0.00 0.00 3.34
120 121 7.976135 ATATTCCCTTTCTTCTGATCGATTG 57.024 36.000 0.00 0.00 0.00 2.67
121 122 5.420725 TTCCCTTTCTTCTGATCGATTGA 57.579 39.130 0.00 0.00 0.00 2.57
122 123 5.016051 TCCCTTTCTTCTGATCGATTGAG 57.984 43.478 0.00 0.00 0.00 3.02
123 124 3.559242 CCCTTTCTTCTGATCGATTGAGC 59.441 47.826 0.00 0.00 0.00 4.26
124 125 4.440880 CCTTTCTTCTGATCGATTGAGCT 58.559 43.478 0.00 0.00 0.00 4.09
125 126 4.507388 CCTTTCTTCTGATCGATTGAGCTC 59.493 45.833 6.82 6.82 0.00 4.09
126 127 4.725790 TTCTTCTGATCGATTGAGCTCA 57.274 40.909 13.74 13.74 0.00 4.26
127 128 4.725790 TCTTCTGATCGATTGAGCTCAA 57.274 40.909 30.23 30.23 40.51 3.02
128 129 5.077134 TCTTCTGATCGATTGAGCTCAAA 57.923 39.130 31.55 16.99 39.55 2.69
129 130 5.107824 TCTTCTGATCGATTGAGCTCAAAG 58.892 41.667 31.55 26.11 39.55 2.77
130 131 3.790091 TCTGATCGATTGAGCTCAAAGG 58.210 45.455 31.55 24.39 39.55 3.11
131 132 2.283298 TGATCGATTGAGCTCAAAGGC 58.717 47.619 31.55 21.51 39.55 4.35
132 133 1.601430 GATCGATTGAGCTCAAAGGCC 59.399 52.381 31.55 18.98 39.55 5.19
133 134 0.392998 TCGATTGAGCTCAAAGGCCC 60.393 55.000 31.55 16.80 39.55 5.80
134 135 0.677731 CGATTGAGCTCAAAGGCCCA 60.678 55.000 31.55 8.95 39.55 5.36
135 136 1.772836 GATTGAGCTCAAAGGCCCAT 58.227 50.000 31.55 14.45 39.55 4.00
136 137 2.746142 CGATTGAGCTCAAAGGCCCATA 60.746 50.000 31.55 7.35 39.55 2.74
137 138 2.897271 TTGAGCTCAAAGGCCCATAA 57.103 45.000 26.61 0.00 32.11 1.90
138 139 2.425143 TGAGCTCAAAGGCCCATAAG 57.575 50.000 15.67 0.00 0.00 1.73
139 140 1.915489 TGAGCTCAAAGGCCCATAAGA 59.085 47.619 15.67 0.00 0.00 2.10
140 141 2.092753 TGAGCTCAAAGGCCCATAAGAG 60.093 50.000 15.67 1.12 0.00 2.85
141 142 1.213926 AGCTCAAAGGCCCATAAGAGG 59.786 52.381 0.00 0.00 0.00 3.69
142 143 1.212935 GCTCAAAGGCCCATAAGAGGA 59.787 52.381 0.00 0.00 0.00 3.71
143 144 2.747799 GCTCAAAGGCCCATAAGAGGAG 60.748 54.545 0.00 0.00 0.00 3.69
144 145 1.846439 TCAAAGGCCCATAAGAGGAGG 59.154 52.381 0.00 0.00 0.00 4.30
145 146 1.133668 CAAAGGCCCATAAGAGGAGGG 60.134 57.143 0.00 0.00 45.68 4.30
146 147 0.346932 AAGGCCCATAAGAGGAGGGA 59.653 55.000 0.00 0.00 45.80 4.20
147 148 0.104725 AGGCCCATAAGAGGAGGGAG 60.105 60.000 0.00 0.00 45.80 4.30
148 149 0.104934 GGCCCATAAGAGGAGGGAGA 60.105 60.000 0.00 0.00 45.80 3.71
149 150 1.695989 GGCCCATAAGAGGAGGGAGAA 60.696 57.143 0.00 0.00 45.80 2.87
150 151 2.343625 GCCCATAAGAGGAGGGAGAAT 58.656 52.381 0.00 0.00 45.80 2.40
151 152 2.304470 GCCCATAAGAGGAGGGAGAATC 59.696 54.545 0.00 0.00 45.80 2.52
152 153 3.868062 CCCATAAGAGGAGGGAGAATCT 58.132 50.000 0.00 0.00 45.80 2.40
153 154 3.582208 CCCATAAGAGGAGGGAGAATCTG 59.418 52.174 0.00 0.00 45.80 2.90
154 155 3.582208 CCATAAGAGGAGGGAGAATCTGG 59.418 52.174 0.00 0.00 33.73 3.86
155 156 2.959421 AAGAGGAGGGAGAATCTGGT 57.041 50.000 0.00 0.00 33.73 4.00
156 157 2.959421 AGAGGAGGGAGAATCTGGTT 57.041 50.000 0.00 0.00 33.73 3.67
157 158 2.476199 AGAGGAGGGAGAATCTGGTTG 58.524 52.381 0.00 0.00 33.73 3.77
158 159 2.045047 AGAGGAGGGAGAATCTGGTTGA 59.955 50.000 0.00 0.00 33.73 3.18
159 160 3.044894 GAGGAGGGAGAATCTGGTTGAT 58.955 50.000 0.00 0.00 36.89 2.57
161 162 3.854994 AGGAGGGAGAATCTGGTTGATTT 59.145 43.478 0.00 0.00 44.70 2.17
162 163 4.293368 AGGAGGGAGAATCTGGTTGATTTT 59.707 41.667 0.00 0.00 44.70 1.82
163 164 4.642437 GGAGGGAGAATCTGGTTGATTTTC 59.358 45.833 0.00 0.00 44.70 2.29
172 173 4.460948 CTGGTTGATTTTCCAGGGAATG 57.539 45.455 0.83 0.00 45.11 2.67
173 174 4.088634 CTGGTTGATTTTCCAGGGAATGA 58.911 43.478 0.83 0.00 45.11 2.57
174 175 4.686891 TGGTTGATTTTCCAGGGAATGAT 58.313 39.130 0.83 0.00 33.79 2.45
175 176 5.092968 TGGTTGATTTTCCAGGGAATGATT 58.907 37.500 0.83 0.00 33.79 2.57
176 177 6.259893 TGGTTGATTTTCCAGGGAATGATTA 58.740 36.000 0.83 0.00 33.79 1.75
177 178 6.902416 TGGTTGATTTTCCAGGGAATGATTAT 59.098 34.615 0.83 0.00 33.79 1.28
178 179 8.064389 TGGTTGATTTTCCAGGGAATGATTATA 58.936 33.333 0.83 0.00 33.79 0.98
179 180 9.093458 GGTTGATTTTCCAGGGAATGATTATAT 57.907 33.333 0.83 0.00 33.79 0.86
180 181 9.918630 GTTGATTTTCCAGGGAATGATTATATG 57.081 33.333 0.83 0.00 33.79 1.78
181 182 8.654485 TGATTTTCCAGGGAATGATTATATGG 57.346 34.615 0.83 0.00 33.79 2.74
182 183 8.455309 TGATTTTCCAGGGAATGATTATATGGA 58.545 33.333 0.83 1.80 33.79 3.41
183 184 9.484806 GATTTTCCAGGGAATGATTATATGGAT 57.515 33.333 0.83 0.00 35.42 3.41
184 185 9.848238 ATTTTCCAGGGAATGATTATATGGATT 57.152 29.630 0.83 0.00 35.42 3.01
185 186 9.673283 TTTTCCAGGGAATGATTATATGGATTT 57.327 29.630 0.83 0.00 35.42 2.17
186 187 8.884124 TTCCAGGGAATGATTATATGGATTTC 57.116 34.615 0.00 0.00 35.42 2.17
187 188 7.999042 TCCAGGGAATGATTATATGGATTTCA 58.001 34.615 1.80 0.00 30.63 2.69
188 189 8.455309 TCCAGGGAATGATTATATGGATTTCAA 58.545 33.333 1.80 0.00 30.63 2.69
189 190 8.746530 CCAGGGAATGATTATATGGATTTCAAG 58.253 37.037 0.00 0.00 0.00 3.02
190 191 8.746530 CAGGGAATGATTATATGGATTTCAAGG 58.253 37.037 0.00 0.00 0.00 3.61
191 192 8.681584 AGGGAATGATTATATGGATTTCAAGGA 58.318 33.333 0.00 0.00 0.00 3.36
192 193 8.964772 GGGAATGATTATATGGATTTCAAGGAG 58.035 37.037 0.00 0.00 0.00 3.69
193 194 8.964772 GGAATGATTATATGGATTTCAAGGAGG 58.035 37.037 0.00 0.00 0.00 4.30
194 195 9.745018 GAATGATTATATGGATTTCAAGGAGGA 57.255 33.333 0.00 0.00 0.00 3.71
203 204 8.697507 ATGGATTTCAAGGAGGATATTGTTAC 57.302 34.615 0.00 0.00 0.00 2.50
204 205 7.060421 TGGATTTCAAGGAGGATATTGTTACC 58.940 38.462 0.00 0.00 0.00 2.85
205 206 7.091993 TGGATTTCAAGGAGGATATTGTTACCT 60.092 37.037 0.00 0.00 36.68 3.08
206 207 7.780271 GGATTTCAAGGAGGATATTGTTACCTT 59.220 37.037 0.00 0.00 38.10 3.50
207 208 8.753497 ATTTCAAGGAGGATATTGTTACCTTC 57.247 34.615 0.00 0.00 35.88 3.46
208 209 6.884472 TCAAGGAGGATATTGTTACCTTCA 57.116 37.500 0.00 0.00 35.88 3.02
209 210 7.451731 TCAAGGAGGATATTGTTACCTTCAT 57.548 36.000 0.00 0.00 35.88 2.57
210 211 7.509546 TCAAGGAGGATATTGTTACCTTCATC 58.490 38.462 0.00 0.00 35.88 2.92
211 212 7.127186 TCAAGGAGGATATTGTTACCTTCATCA 59.873 37.037 0.00 0.00 35.88 3.07
212 213 7.072263 AGGAGGATATTGTTACCTTCATCAG 57.928 40.000 0.00 0.00 33.89 2.90
213 214 6.846505 AGGAGGATATTGTTACCTTCATCAGA 59.153 38.462 0.00 0.00 33.89 3.27
214 215 7.515514 AGGAGGATATTGTTACCTTCATCAGAT 59.484 37.037 0.00 0.00 33.89 2.90
215 216 8.160106 GGAGGATATTGTTACCTTCATCAGATT 58.840 37.037 0.00 0.00 33.89 2.40
216 217 8.915057 AGGATATTGTTACCTTCATCAGATTG 57.085 34.615 0.00 0.00 0.00 2.67
217 218 8.717717 AGGATATTGTTACCTTCATCAGATTGA 58.282 33.333 0.00 0.00 0.00 2.57
218 219 9.512588 GGATATTGTTACCTTCATCAGATTGAT 57.487 33.333 0.00 0.00 37.65 2.57
221 222 8.812513 ATTGTTACCTTCATCAGATTGATTGA 57.187 30.769 0.00 0.00 34.28 2.57
222 223 8.812513 TTGTTACCTTCATCAGATTGATTGAT 57.187 30.769 0.00 0.00 34.28 2.57
223 224 9.904198 TTGTTACCTTCATCAGATTGATTGATA 57.096 29.630 0.00 0.00 34.28 2.15
224 225 9.904198 TGTTACCTTCATCAGATTGATTGATAA 57.096 29.630 0.00 0.00 34.28 1.75
227 228 8.447924 ACCTTCATCAGATTGATTGATAACTG 57.552 34.615 0.00 0.00 34.28 3.16
228 229 7.501559 ACCTTCATCAGATTGATTGATAACTGG 59.498 37.037 0.00 0.00 34.28 4.00
229 230 7.501559 CCTTCATCAGATTGATTGATAACTGGT 59.498 37.037 0.00 0.00 34.28 4.00
230 231 8.442632 TTCATCAGATTGATTGATAACTGGTC 57.557 34.615 0.00 0.00 34.28 4.02
231 232 6.703165 TCATCAGATTGATTGATAACTGGTCG 59.297 38.462 0.00 0.00 34.28 4.79
232 233 5.977635 TCAGATTGATTGATAACTGGTCGT 58.022 37.500 0.00 0.00 0.00 4.34
233 234 6.042777 TCAGATTGATTGATAACTGGTCGTC 58.957 40.000 0.00 0.00 0.00 4.20
234 235 5.043903 AGATTGATTGATAACTGGTCGTCG 58.956 41.667 0.00 0.00 0.00 5.12
235 236 4.443913 TTGATTGATAACTGGTCGTCGA 57.556 40.909 0.00 0.00 0.00 4.20
236 237 4.649088 TGATTGATAACTGGTCGTCGAT 57.351 40.909 0.00 0.00 0.00 3.59
237 238 5.006153 TGATTGATAACTGGTCGTCGATT 57.994 39.130 0.00 0.00 0.00 3.34
238 239 4.803613 TGATTGATAACTGGTCGTCGATTG 59.196 41.667 0.00 0.00 0.00 2.67
239 240 4.443913 TTGATAACTGGTCGTCGATTGA 57.556 40.909 0.00 0.00 0.00 2.57
240 241 3.766151 TGATAACTGGTCGTCGATTGAC 58.234 45.455 11.18 11.18 41.91 3.18
241 242 3.191791 TGATAACTGGTCGTCGATTGACA 59.808 43.478 18.66 7.52 45.80 3.58
242 243 2.519377 AACTGGTCGTCGATTGACAA 57.481 45.000 18.66 9.61 45.80 3.18
243 244 1.779569 ACTGGTCGTCGATTGACAAC 58.220 50.000 18.66 4.71 45.80 3.32
244 245 1.340248 ACTGGTCGTCGATTGACAACT 59.660 47.619 18.66 0.00 45.80 3.16
245 246 2.555325 ACTGGTCGTCGATTGACAACTA 59.445 45.455 18.66 1.96 45.80 2.24
246 247 2.915463 CTGGTCGTCGATTGACAACTAC 59.085 50.000 18.66 5.35 45.80 2.73
247 248 2.555325 TGGTCGTCGATTGACAACTACT 59.445 45.455 18.66 0.00 45.80 2.57
248 249 2.915463 GGTCGTCGATTGACAACTACTG 59.085 50.000 18.66 0.00 45.80 2.74
249 250 2.341760 GTCGTCGATTGACAACTACTGC 59.658 50.000 13.58 0.00 45.80 4.40
250 251 2.228103 TCGTCGATTGACAACTACTGCT 59.772 45.455 13.58 0.00 45.80 4.24
251 252 2.987149 CGTCGATTGACAACTACTGCTT 59.013 45.455 13.58 0.00 45.80 3.91
252 253 3.428870 CGTCGATTGACAACTACTGCTTT 59.571 43.478 13.58 0.00 45.80 3.51
253 254 4.084537 CGTCGATTGACAACTACTGCTTTT 60.085 41.667 13.58 0.00 45.80 2.27
254 255 5.558273 CGTCGATTGACAACTACTGCTTTTT 60.558 40.000 13.58 0.00 45.80 1.94
255 256 5.846473 GTCGATTGACAACTACTGCTTTTTC 59.154 40.000 8.31 0.00 44.82 2.29
256 257 5.049680 TCGATTGACAACTACTGCTTTTTCC 60.050 40.000 0.00 0.00 0.00 3.13
257 258 5.277779 CGATTGACAACTACTGCTTTTTCCA 60.278 40.000 0.00 0.00 0.00 3.53
258 259 5.499139 TTGACAACTACTGCTTTTTCCAG 57.501 39.130 0.00 0.00 36.41 3.86
259 260 4.523083 TGACAACTACTGCTTTTTCCAGT 58.477 39.130 0.00 0.00 44.99 4.00
260 261 4.335315 TGACAACTACTGCTTTTTCCAGTG 59.665 41.667 4.44 0.00 43.01 3.66
261 262 4.523083 ACAACTACTGCTTTTTCCAGTGA 58.477 39.130 4.44 0.00 43.01 3.41
262 263 4.576463 ACAACTACTGCTTTTTCCAGTGAG 59.424 41.667 4.44 1.84 43.01 3.51
263 264 4.689612 ACTACTGCTTTTTCCAGTGAGA 57.310 40.909 4.44 0.00 43.01 3.27
264 265 5.036117 ACTACTGCTTTTTCCAGTGAGAA 57.964 39.130 4.44 0.00 43.01 2.87
265 266 5.437060 ACTACTGCTTTTTCCAGTGAGAAA 58.563 37.500 4.44 0.00 43.01 2.52
266 267 4.907879 ACTGCTTTTTCCAGTGAGAAAG 57.092 40.909 0.00 0.31 42.62 2.62
267 268 3.633986 ACTGCTTTTTCCAGTGAGAAAGG 59.366 43.478 11.95 5.81 40.98 3.11
268 269 3.885297 CTGCTTTTTCCAGTGAGAAAGGA 59.115 43.478 11.95 9.41 40.98 3.36
269 270 4.277476 TGCTTTTTCCAGTGAGAAAGGAA 58.723 39.130 11.95 0.00 39.16 3.36
270 271 4.339247 TGCTTTTTCCAGTGAGAAAGGAAG 59.661 41.667 11.95 11.35 39.16 3.46
271 272 4.261783 GCTTTTTCCAGTGAGAAAGGAAGG 60.262 45.833 14.07 0.00 40.98 3.46
272 273 4.788925 TTTTCCAGTGAGAAAGGAAGGA 57.211 40.909 0.00 0.00 41.97 3.36
273 274 4.357918 TTTCCAGTGAGAAAGGAAGGAG 57.642 45.455 0.00 0.00 41.97 3.69
274 275 2.260822 TCCAGTGAGAAAGGAAGGAGG 58.739 52.381 0.00 0.00 0.00 4.30
275 276 2.158158 TCCAGTGAGAAAGGAAGGAGGA 60.158 50.000 0.00 0.00 0.00 3.71
276 277 2.639839 CCAGTGAGAAAGGAAGGAGGAA 59.360 50.000 0.00 0.00 0.00 3.36
277 278 3.307339 CCAGTGAGAAAGGAAGGAGGAAG 60.307 52.174 0.00 0.00 0.00 3.46
278 279 2.909662 AGTGAGAAAGGAAGGAGGAAGG 59.090 50.000 0.00 0.00 0.00 3.46
279 280 2.026729 GTGAGAAAGGAAGGAGGAAGGG 60.027 54.545 0.00 0.00 0.00 3.95
280 281 1.562008 GAGAAAGGAAGGAGGAAGGGG 59.438 57.143 0.00 0.00 0.00 4.79
281 282 1.154434 AGAAAGGAAGGAGGAAGGGGA 59.846 52.381 0.00 0.00 0.00 4.81
282 283 2.209758 GAAAGGAAGGAGGAAGGGGAT 58.790 52.381 0.00 0.00 0.00 3.85
283 284 1.900254 AAGGAAGGAGGAAGGGGATC 58.100 55.000 0.00 0.00 0.00 3.36
284 285 1.031112 AGGAAGGAGGAAGGGGATCT 58.969 55.000 0.00 0.00 0.00 2.75
285 286 1.061735 AGGAAGGAGGAAGGGGATCTC 60.062 57.143 0.00 0.00 0.00 2.75
286 287 1.344496 GGAAGGAGGAAGGGGATCTCA 60.344 57.143 0.00 0.00 0.00 3.27
287 288 2.482494 GAAGGAGGAAGGGGATCTCAA 58.518 52.381 0.00 0.00 0.00 3.02
288 289 1.886422 AGGAGGAAGGGGATCTCAAC 58.114 55.000 0.00 0.00 0.00 3.18
289 290 1.081174 AGGAGGAAGGGGATCTCAACA 59.919 52.381 0.00 0.00 0.00 3.33
290 291 1.916181 GGAGGAAGGGGATCTCAACAA 59.084 52.381 0.00 0.00 0.00 2.83
291 292 2.092699 GGAGGAAGGGGATCTCAACAAG 60.093 54.545 0.00 0.00 0.00 3.16
292 293 1.283321 AGGAAGGGGATCTCAACAAGC 59.717 52.381 0.00 0.00 0.00 4.01
293 294 1.683319 GGAAGGGGATCTCAACAAGCC 60.683 57.143 0.00 0.00 0.00 4.35
294 295 1.004745 GAAGGGGATCTCAACAAGCCA 59.995 52.381 0.00 0.00 0.00 4.75
295 296 1.302907 AGGGGATCTCAACAAGCCAT 58.697 50.000 0.00 0.00 0.00 4.40
296 297 1.064166 AGGGGATCTCAACAAGCCATG 60.064 52.381 0.00 0.00 0.00 3.66
297 298 1.396653 GGGATCTCAACAAGCCATGG 58.603 55.000 7.63 7.63 0.00 3.66
298 299 1.064463 GGGATCTCAACAAGCCATGGA 60.064 52.381 18.40 0.00 0.00 3.41
299 300 2.423947 GGGATCTCAACAAGCCATGGAT 60.424 50.000 18.40 6.18 0.00 3.41
300 301 3.181440 GGGATCTCAACAAGCCATGGATA 60.181 47.826 18.40 0.00 0.00 2.59
301 302 4.508047 GGGATCTCAACAAGCCATGGATAT 60.508 45.833 18.40 0.00 0.00 1.63
302 303 5.280676 GGGATCTCAACAAGCCATGGATATA 60.281 44.000 18.40 0.00 0.00 0.86
303 304 6.421485 GGATCTCAACAAGCCATGGATATAT 58.579 40.000 18.40 0.00 0.00 0.86
325 326 1.004745 AGGTAGCCACAAACATCCAGG 59.995 52.381 0.00 0.00 0.00 4.45
329 330 3.737559 AGCCACAAACATCCAGGATTA 57.262 42.857 0.00 0.00 0.00 1.75
338 339 3.602608 ACATCCAGGATTAGGCCACTAT 58.397 45.455 5.01 0.00 0.00 2.12
339 340 3.328931 ACATCCAGGATTAGGCCACTATG 59.671 47.826 5.01 0.00 0.00 2.23
340 341 3.060479 TCCAGGATTAGGCCACTATGT 57.940 47.619 5.01 0.00 0.00 2.29
341 342 4.207698 TCCAGGATTAGGCCACTATGTA 57.792 45.455 5.01 0.00 0.00 2.29
343 344 3.008049 CCAGGATTAGGCCACTATGTACC 59.992 52.174 5.01 0.00 0.00 3.34
345 346 2.305052 GGATTAGGCCACTATGTACCCC 59.695 54.545 5.01 0.00 0.00 4.95
346 347 1.810455 TTAGGCCACTATGTACCCCC 58.190 55.000 5.01 0.00 0.00 5.40
347 348 0.643266 TAGGCCACTATGTACCCCCA 59.357 55.000 5.01 0.00 0.00 4.96
348 349 0.694444 AGGCCACTATGTACCCCCAG 60.694 60.000 5.01 0.00 0.00 4.45
349 350 1.148498 GCCACTATGTACCCCCAGC 59.852 63.158 0.00 0.00 0.00 4.85
350 351 1.445942 CCACTATGTACCCCCAGCG 59.554 63.158 0.00 0.00 0.00 5.18
373 374 2.195567 GCTGCAACCTGGTGCTCAA 61.196 57.895 17.81 2.66 45.17 3.02
386 387 1.282248 TGCTCAACAACGCTAGCGAC 61.282 55.000 41.33 19.22 42.83 5.19
391 392 0.388649 AACAACGCTAGCGACAGAGG 60.389 55.000 41.33 23.66 42.83 3.69
395 396 0.748367 ACGCTAGCGACAGAGGATGA 60.748 55.000 41.33 0.00 42.83 2.92
400 401 2.220761 GCGACAGAGGATGATTCGC 58.779 57.895 0.00 0.00 43.39 4.70
405 406 2.543012 GACAGAGGATGATTCGCATGTG 59.457 50.000 0.00 0.00 37.34 3.21
421 422 1.081242 GTGTGGCAAGCAACATCGG 60.081 57.895 5.44 0.00 31.87 4.18
462 463 2.349438 CGACCAAACCAATCAGTCAACG 60.349 50.000 0.00 0.00 0.00 4.10
465 466 0.591170 AAACCAATCAGTCAACGCCG 59.409 50.000 0.00 0.00 0.00 6.46
483 484 1.213094 CGCCGAAACGAAGACACACT 61.213 55.000 0.00 0.00 34.06 3.55
541 542 2.668280 GCGACGAACCAAGCCTCAC 61.668 63.158 0.00 0.00 0.00 3.51
547 548 1.087501 GAACCAAGCCTCACGAATCC 58.912 55.000 0.00 0.00 0.00 3.01
560 561 1.209621 CGAATCCACCCCTTCCCTAA 58.790 55.000 0.00 0.00 0.00 2.69
592 593 4.221262 CCAAACACCACAGATCCATCAAAT 59.779 41.667 0.00 0.00 0.00 2.32
596 597 4.703575 ACACCACAGATCCATCAAATCTTG 59.296 41.667 0.00 0.00 31.05 3.02
620 621 1.685820 CCTCCCTTCTCACCCCAAC 59.314 63.158 0.00 0.00 0.00 3.77
685 692 0.618458 TCTCCACCTTCCCCAAATCG 59.382 55.000 0.00 0.00 0.00 3.34
710 717 0.460284 TCTCTTTCCCGAAGATGCGC 60.460 55.000 0.00 0.00 43.23 6.09
738 746 1.158434 GACGGGCGGTGAAATTGTTA 58.842 50.000 1.11 0.00 0.00 2.41
769 777 1.014564 GGTGTACGCAGAGCTGAACC 61.015 60.000 8.97 0.00 0.00 3.62
787 801 2.649034 GACACGGAGGAAGTCGCA 59.351 61.111 0.00 0.00 0.00 5.10
827 842 0.950555 CCCCATGGTGCGATATCACG 60.951 60.000 11.73 0.00 37.83 4.35
849 864 2.815211 CCAGCGTGGTCCACATCG 60.815 66.667 21.91 9.32 33.40 3.84
888 904 0.543749 CTGGGAGGGCTCGATTTCTT 59.456 55.000 0.00 0.00 0.00 2.52
905 921 3.611766 TCTTGGGAGCTTAGTAACTGC 57.388 47.619 0.00 0.00 0.00 4.40
906 922 2.903784 TCTTGGGAGCTTAGTAACTGCA 59.096 45.455 0.00 0.00 0.00 4.41
907 923 3.055819 TCTTGGGAGCTTAGTAACTGCAG 60.056 47.826 13.48 13.48 0.00 4.41
908 924 1.066143 TGGGAGCTTAGTAACTGCAGC 60.066 52.381 15.27 0.00 0.00 5.25
909 925 1.657822 GGAGCTTAGTAACTGCAGCC 58.342 55.000 15.27 1.59 32.25 4.85
910 926 1.208293 GGAGCTTAGTAACTGCAGCCT 59.792 52.381 15.27 9.98 32.25 4.58
911 927 2.355209 GGAGCTTAGTAACTGCAGCCTT 60.355 50.000 15.27 3.96 32.25 4.35
1218 1243 2.573869 CTGGTGCAGGTCGTCGAT 59.426 61.111 0.00 0.00 0.00 3.59
1248 1273 4.083862 GACGGGAAGAAGCCGCCT 62.084 66.667 0.00 0.00 0.00 5.52
1270 1304 2.514013 GCCGTGGTCGAATGCTACG 61.514 63.158 3.84 3.84 39.86 3.51
1494 1528 5.838531 ATCTACTACAGTAGTGTTCAGCC 57.161 43.478 21.71 0.00 46.08 4.85
1495 1529 4.919793 TCTACTACAGTAGTGTTCAGCCT 58.080 43.478 21.71 0.00 46.08 4.58
1496 1530 6.058553 TCTACTACAGTAGTGTTCAGCCTA 57.941 41.667 21.71 0.00 46.08 3.93
1505 1539 8.820892 ACAGTAGTGTTCAGCCTAAGCTATAGG 61.821 44.444 14.28 14.28 40.29 2.57
1584 1618 5.084519 TCCTATTCCTATGTAATCGCCTGT 58.915 41.667 0.00 0.00 0.00 4.00
1821 2992 1.611673 CCTGCAGGGGTTAACACTCAG 60.612 57.143 26.14 11.96 0.00 3.35
1880 3051 3.199946 TCCTGTGGTATGATGAAAGTCCC 59.800 47.826 0.00 0.00 0.00 4.46
1886 3057 3.308832 GGTATGATGAAAGTCCCCCAACA 60.309 47.826 0.00 0.00 0.00 3.33
1887 3058 2.584835 TGATGAAAGTCCCCCAACAG 57.415 50.000 0.00 0.00 0.00 3.16
1891 3062 3.611025 TGAAAGTCCCCCAACAGAAAT 57.389 42.857 0.00 0.00 0.00 2.17
1897 3068 1.786441 TCCCCCAACAGAAATCCAGTT 59.214 47.619 0.00 0.00 0.00 3.16
1898 3069 2.171003 CCCCCAACAGAAATCCAGTTC 58.829 52.381 0.00 0.00 0.00 3.01
1928 3099 5.469479 AGCAACCGAGGAAACAAAATAATG 58.531 37.500 0.00 0.00 0.00 1.90
1931 3102 6.630071 CAACCGAGGAAACAAAATAATGGAT 58.370 36.000 0.00 0.00 0.00 3.41
1932 3103 7.629652 GCAACCGAGGAAACAAAATAATGGATA 60.630 37.037 0.00 0.00 0.00 2.59
2011 3468 3.539604 GTCATGGAGAAGGAAGATGGTG 58.460 50.000 0.00 0.00 0.00 4.17
2096 3553 1.134699 CAGGATGCTTCGAACCTGCTA 60.135 52.381 16.81 2.18 42.30 3.49
2109 3566 4.512944 CGAACCTGCTATGCAAGAATATGT 59.487 41.667 0.00 0.00 38.41 2.29
2129 3586 0.671472 TTGCATGTCTCGTGCTCCTG 60.671 55.000 13.73 0.00 45.53 3.86
2158 3615 3.563808 TCACACCACACTACATTTCTTGC 59.436 43.478 0.00 0.00 0.00 4.01
2170 3627 4.081406 ACATTTCTTGCCTTGTAGCATGA 58.919 39.130 0.00 0.00 43.64 3.07
2214 3671 1.238439 ATGGGCAAGAGTTTCACACG 58.762 50.000 0.00 0.00 0.00 4.49
2257 3716 3.802613 CACGAGTGCTCTGCTTAGT 57.197 52.632 0.00 0.00 0.00 2.24
2258 3717 2.921634 CACGAGTGCTCTGCTTAGTA 57.078 50.000 0.00 0.00 0.00 1.82
2259 3718 2.791567 CACGAGTGCTCTGCTTAGTAG 58.208 52.381 0.00 0.00 0.00 2.57
2260 3719 2.162608 CACGAGTGCTCTGCTTAGTAGT 59.837 50.000 0.00 0.00 0.00 2.73
2261 3720 2.162608 ACGAGTGCTCTGCTTAGTAGTG 59.837 50.000 0.00 0.00 0.00 2.74
2262 3721 2.478709 CGAGTGCTCTGCTTAGTAGTGG 60.479 54.545 0.00 0.00 0.00 4.00
2263 3722 2.755655 GAGTGCTCTGCTTAGTAGTGGA 59.244 50.000 0.00 0.00 0.00 4.02
2264 3723 3.165875 AGTGCTCTGCTTAGTAGTGGAA 58.834 45.455 0.00 0.00 0.00 3.53
2265 3724 3.578716 AGTGCTCTGCTTAGTAGTGGAAA 59.421 43.478 0.00 0.00 0.00 3.13
2266 3725 4.040461 AGTGCTCTGCTTAGTAGTGGAAAA 59.960 41.667 0.00 0.00 0.00 2.29
2267 3726 4.152580 GTGCTCTGCTTAGTAGTGGAAAAC 59.847 45.833 0.00 0.00 0.00 2.43
2268 3727 3.685272 GCTCTGCTTAGTAGTGGAAAACC 59.315 47.826 0.00 0.00 0.00 3.27
2269 3728 4.802918 GCTCTGCTTAGTAGTGGAAAACCA 60.803 45.833 0.00 0.00 0.00 3.67
2270 3729 5.298989 TCTGCTTAGTAGTGGAAAACCAA 57.701 39.130 0.00 0.00 0.00 3.67
2271 3730 5.061179 TCTGCTTAGTAGTGGAAAACCAAC 58.939 41.667 0.00 0.00 0.00 3.77
2272 3731 4.783055 TGCTTAGTAGTGGAAAACCAACA 58.217 39.130 0.00 0.00 0.00 3.33
2273 3732 4.819630 TGCTTAGTAGTGGAAAACCAACAG 59.180 41.667 0.00 0.00 0.00 3.16
2274 3733 4.320275 GCTTAGTAGTGGAAAACCAACAGC 60.320 45.833 0.00 0.00 0.00 4.40
2275 3734 2.583143 AGTAGTGGAAAACCAACAGCC 58.417 47.619 0.00 0.00 0.00 4.85
2276 3735 1.265905 GTAGTGGAAAACCAACAGCCG 59.734 52.381 0.00 0.00 0.00 5.52
2277 3736 0.395173 AGTGGAAAACCAACAGCCGT 60.395 50.000 0.00 0.00 0.00 5.68
2278 3737 0.248866 GTGGAAAACCAACAGCCGTG 60.249 55.000 0.00 0.00 0.00 4.94
2279 3738 1.299850 GGAAAACCAACAGCCGTGC 60.300 57.895 0.00 0.00 0.00 5.34
2280 3739 1.733526 GAAAACCAACAGCCGTGCT 59.266 52.632 0.00 0.00 40.77 4.40
2289 3748 3.121030 AGCCGTGCTGCAATCGAC 61.121 61.111 13.37 2.76 37.57 4.20
2290 3749 3.121030 GCCGTGCTGCAATCGACT 61.121 61.111 13.37 0.00 0.00 4.18
2291 3750 1.809619 GCCGTGCTGCAATCGACTA 60.810 57.895 13.37 0.00 0.00 2.59
2292 3751 1.358725 GCCGTGCTGCAATCGACTAA 61.359 55.000 13.37 0.00 0.00 2.24
2293 3752 0.370273 CCGTGCTGCAATCGACTAAC 59.630 55.000 13.37 0.00 0.00 2.34
2294 3753 0.023732 CGTGCTGCAATCGACTAACG 59.976 55.000 2.77 0.00 44.09 3.18
2295 3754 0.247301 GTGCTGCAATCGACTAACGC 60.247 55.000 2.77 0.00 42.26 4.84
2296 3755 0.389817 TGCTGCAATCGACTAACGCT 60.390 50.000 0.00 0.00 42.26 5.07
2297 3756 0.025513 GCTGCAATCGACTAACGCTG 59.974 55.000 0.00 0.00 42.26 5.18
2298 3757 0.025513 CTGCAATCGACTAACGCTGC 59.974 55.000 0.00 0.00 44.58 5.25
2299 3758 2.078226 GCAATCGACTAACGCTGCA 58.922 52.632 0.00 0.00 44.14 4.41
2300 3759 0.025513 GCAATCGACTAACGCTGCAG 59.974 55.000 10.11 10.11 44.14 4.41
2301 3760 1.350193 CAATCGACTAACGCTGCAGT 58.650 50.000 16.64 0.00 42.26 4.40
2302 3761 1.726791 CAATCGACTAACGCTGCAGTT 59.273 47.619 16.64 6.05 42.26 3.16
2303 3762 2.921121 CAATCGACTAACGCTGCAGTTA 59.079 45.455 16.64 6.97 42.26 2.24
2308 3767 2.510615 CTAACGCTGCAGTTAGTTGC 57.489 50.000 24.29 7.92 45.04 4.17
2328 3787 2.886081 CAGAGGTGCTATGACTGACAC 58.114 52.381 0.00 0.00 0.00 3.67
2329 3788 2.495270 CAGAGGTGCTATGACTGACACT 59.505 50.000 0.00 0.00 33.53 3.55
2330 3789 2.495270 AGAGGTGCTATGACTGACACTG 59.505 50.000 0.00 0.00 33.53 3.66
2331 3790 1.552337 AGGTGCTATGACTGACACTGG 59.448 52.381 0.00 0.00 33.53 4.00
2332 3791 1.406069 GGTGCTATGACTGACACTGGG 60.406 57.143 0.00 0.00 33.53 4.45
2333 3792 0.904649 TGCTATGACTGACACTGGGG 59.095 55.000 0.00 0.00 0.00 4.96
2368 3914 2.266554 CTGGTCTGTGCGAGAGAAATC 58.733 52.381 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.687730 GCTAGCTTTCCTTTCAAAGTGAAAC 59.312 40.000 7.70 7.23 41.02 2.78
1 2 5.594317 AGCTAGCTTTCCTTTCAAAGTGAAA 59.406 36.000 12.68 11.20 43.37 2.69
2 3 5.133221 AGCTAGCTTTCCTTTCAAAGTGAA 58.867 37.500 12.68 0.00 36.00 3.18
3 4 4.718961 AGCTAGCTTTCCTTTCAAAGTGA 58.281 39.130 12.68 0.00 36.00 3.41
4 5 6.749923 ATAGCTAGCTTTCCTTTCAAAGTG 57.250 37.500 24.88 0.00 36.00 3.16
5 6 8.267894 TCATATAGCTAGCTTTCCTTTCAAAGT 58.732 33.333 24.88 0.00 36.00 2.66
6 7 8.668510 TCATATAGCTAGCTTTCCTTTCAAAG 57.331 34.615 24.88 1.37 36.58 2.77
7 8 8.486210 TCTCATATAGCTAGCTTTCCTTTCAAA 58.514 33.333 24.88 0.00 0.00 2.69
8 9 8.023021 TCTCATATAGCTAGCTTTCCTTTCAA 57.977 34.615 24.88 0.74 0.00 2.69
9 10 7.603180 TCTCATATAGCTAGCTTTCCTTTCA 57.397 36.000 24.88 1.60 0.00 2.69
10 11 7.487829 CGATCTCATATAGCTAGCTTTCCTTTC 59.512 40.741 24.88 9.85 0.00 2.62
11 12 7.177568 TCGATCTCATATAGCTAGCTTTCCTTT 59.822 37.037 24.88 0.00 0.00 3.11
12 13 6.661377 TCGATCTCATATAGCTAGCTTTCCTT 59.339 38.462 24.88 5.85 0.00 3.36
13 14 6.184068 TCGATCTCATATAGCTAGCTTTCCT 58.816 40.000 24.88 8.21 0.00 3.36
14 15 6.443934 TCGATCTCATATAGCTAGCTTTCC 57.556 41.667 24.88 1.79 0.00 3.13
15 16 8.925161 ATTTCGATCTCATATAGCTAGCTTTC 57.075 34.615 24.88 6.56 0.00 2.62
16 17 8.526978 TGATTTCGATCTCATATAGCTAGCTTT 58.473 33.333 24.88 18.06 0.00 3.51
17 18 7.973388 GTGATTTCGATCTCATATAGCTAGCTT 59.027 37.037 24.88 13.16 0.00 3.74
18 19 7.339212 AGTGATTTCGATCTCATATAGCTAGCT 59.661 37.037 23.12 23.12 0.00 3.32
19 20 7.479980 AGTGATTTCGATCTCATATAGCTAGC 58.520 38.462 6.62 6.62 0.00 3.42
20 21 8.892723 AGAGTGATTTCGATCTCATATAGCTAG 58.107 37.037 0.00 0.00 0.00 3.42
21 22 8.800370 AGAGTGATTTCGATCTCATATAGCTA 57.200 34.615 0.00 0.00 0.00 3.32
22 23 7.701539 AGAGTGATTTCGATCTCATATAGCT 57.298 36.000 0.00 0.00 0.00 3.32
23 24 9.663904 GATAGAGTGATTTCGATCTCATATAGC 57.336 37.037 1.32 0.00 0.00 2.97
27 28 8.874816 CGTAGATAGAGTGATTTCGATCTCATA 58.125 37.037 2.59 0.00 39.35 2.15
28 29 7.604545 TCGTAGATAGAGTGATTTCGATCTCAT 59.395 37.037 2.59 0.00 39.35 2.90
29 30 6.929606 TCGTAGATAGAGTGATTTCGATCTCA 59.070 38.462 2.59 0.00 39.35 3.27
30 31 7.354025 TCGTAGATAGAGTGATTTCGATCTC 57.646 40.000 2.59 0.00 39.35 2.75
31 32 7.915293 ATCGTAGATAGAGTGATTTCGATCT 57.085 36.000 4.50 4.50 45.12 2.75
34 35 9.216117 TGAATATCGTAGATAGAGTGATTTCGA 57.784 33.333 0.00 0.00 45.12 3.71
35 36 9.995957 ATGAATATCGTAGATAGAGTGATTTCG 57.004 33.333 0.00 0.00 45.12 3.46
38 39 9.579768 GCAATGAATATCGTAGATAGAGTGATT 57.420 33.333 0.00 0.00 45.12 2.57
39 40 8.743714 TGCAATGAATATCGTAGATAGAGTGAT 58.256 33.333 0.00 0.00 45.12 3.06
40 41 8.023706 GTGCAATGAATATCGTAGATAGAGTGA 58.976 37.037 0.00 0.00 45.12 3.41
41 42 7.274468 GGTGCAATGAATATCGTAGATAGAGTG 59.726 40.741 0.00 0.00 45.12 3.51
42 43 7.039714 TGGTGCAATGAATATCGTAGATAGAGT 60.040 37.037 0.00 0.00 45.12 3.24
43 44 7.315890 TGGTGCAATGAATATCGTAGATAGAG 58.684 38.462 0.00 0.00 45.12 2.43
44 45 7.227049 TGGTGCAATGAATATCGTAGATAGA 57.773 36.000 0.00 0.00 45.12 1.98
45 46 7.761249 TCATGGTGCAATGAATATCGTAGATAG 59.239 37.037 0.00 0.00 35.81 2.08
46 47 7.610865 TCATGGTGCAATGAATATCGTAGATA 58.389 34.615 0.00 0.00 35.81 1.98
47 48 6.466812 TCATGGTGCAATGAATATCGTAGAT 58.533 36.000 0.00 0.00 35.81 1.98
48 49 5.852827 TCATGGTGCAATGAATATCGTAGA 58.147 37.500 0.00 0.00 35.46 2.59
49 50 6.732531 ATCATGGTGCAATGAATATCGTAG 57.267 37.500 5.21 0.00 39.90 3.51
50 51 6.709846 TCAATCATGGTGCAATGAATATCGTA 59.290 34.615 5.21 0.00 39.90 3.43
51 52 5.532032 TCAATCATGGTGCAATGAATATCGT 59.468 36.000 5.21 0.00 39.90 3.73
52 53 6.004408 TCAATCATGGTGCAATGAATATCG 57.996 37.500 5.21 0.00 39.90 2.92
53 54 6.866770 CCTTCAATCATGGTGCAATGAATATC 59.133 38.462 5.21 0.00 39.90 1.63
54 55 6.551975 TCCTTCAATCATGGTGCAATGAATAT 59.448 34.615 5.21 0.00 39.90 1.28
55 56 5.892686 TCCTTCAATCATGGTGCAATGAATA 59.107 36.000 5.21 0.00 39.90 1.75
56 57 4.712829 TCCTTCAATCATGGTGCAATGAAT 59.287 37.500 5.21 0.00 39.90 2.57
57 58 4.082081 GTCCTTCAATCATGGTGCAATGAA 60.082 41.667 5.21 0.00 39.90 2.57
58 59 3.444742 GTCCTTCAATCATGGTGCAATGA 59.555 43.478 3.61 3.61 40.73 2.57
59 60 3.193903 TGTCCTTCAATCATGGTGCAATG 59.806 43.478 0.00 0.00 0.00 2.82
60 61 3.433343 TGTCCTTCAATCATGGTGCAAT 58.567 40.909 0.00 0.00 0.00 3.56
61 62 2.874014 TGTCCTTCAATCATGGTGCAA 58.126 42.857 0.00 0.00 0.00 4.08
62 63 2.583024 TGTCCTTCAATCATGGTGCA 57.417 45.000 0.00 0.00 0.00 4.57
63 64 3.444742 TCATTGTCCTTCAATCATGGTGC 59.555 43.478 0.00 0.00 43.93 5.01
64 65 4.097437 CCTCATTGTCCTTCAATCATGGTG 59.903 45.833 0.00 0.00 43.93 4.17
65 66 4.275810 CCTCATTGTCCTTCAATCATGGT 58.724 43.478 0.00 0.00 43.93 3.55
66 67 3.635373 CCCTCATTGTCCTTCAATCATGG 59.365 47.826 0.00 0.00 43.93 3.66
67 68 3.635373 CCCCTCATTGTCCTTCAATCATG 59.365 47.826 0.00 0.00 43.93 3.07
68 69 3.907221 CCCCTCATTGTCCTTCAATCAT 58.093 45.455 0.00 0.00 43.93 2.45
69 70 2.621407 GCCCCTCATTGTCCTTCAATCA 60.621 50.000 0.00 0.00 43.93 2.57
70 71 2.027385 GCCCCTCATTGTCCTTCAATC 58.973 52.381 0.00 0.00 43.93 2.67
71 72 1.358787 TGCCCCTCATTGTCCTTCAAT 59.641 47.619 0.00 0.00 46.32 2.57
72 73 0.776810 TGCCCCTCATTGTCCTTCAA 59.223 50.000 0.00 0.00 40.53 2.69
73 74 0.329261 CTGCCCCTCATTGTCCTTCA 59.671 55.000 0.00 0.00 0.00 3.02
74 75 0.394899 CCTGCCCCTCATTGTCCTTC 60.395 60.000 0.00 0.00 0.00 3.46
75 76 1.142688 ACCTGCCCCTCATTGTCCTT 61.143 55.000 0.00 0.00 0.00 3.36
76 77 1.142688 AACCTGCCCCTCATTGTCCT 61.143 55.000 0.00 0.00 0.00 3.85
77 78 0.623723 TAACCTGCCCCTCATTGTCC 59.376 55.000 0.00 0.00 0.00 4.02
78 79 2.736670 ATAACCTGCCCCTCATTGTC 57.263 50.000 0.00 0.00 0.00 3.18
79 80 4.447762 GGAATATAACCTGCCCCTCATTGT 60.448 45.833 0.00 0.00 0.00 2.71
80 81 4.082125 GGAATATAACCTGCCCCTCATTG 58.918 47.826 0.00 0.00 0.00 2.82
81 82 3.076032 GGGAATATAACCTGCCCCTCATT 59.924 47.826 0.00 0.00 32.50 2.57
82 83 2.649816 GGGAATATAACCTGCCCCTCAT 59.350 50.000 0.00 0.00 32.50 2.90
83 84 2.062636 GGGAATATAACCTGCCCCTCA 58.937 52.381 0.00 0.00 32.50 3.86
84 85 2.349445 AGGGAATATAACCTGCCCCTC 58.651 52.381 0.00 0.00 39.89 4.30
85 86 2.533018 AGGGAATATAACCTGCCCCT 57.467 50.000 0.00 0.00 39.68 4.79
86 87 3.140332 AGAAAGGGAATATAACCTGCCCC 59.860 47.826 0.00 0.00 39.68 5.80
87 88 4.455070 AGAAAGGGAATATAACCTGCCC 57.545 45.455 0.00 0.00 37.13 5.36
88 89 5.532779 CAGAAGAAAGGGAATATAACCTGCC 59.467 44.000 0.00 0.00 37.13 4.85
89 90 6.357367 TCAGAAGAAAGGGAATATAACCTGC 58.643 40.000 0.00 0.00 37.13 4.85
90 91 7.386299 CGATCAGAAGAAAGGGAATATAACCTG 59.614 40.741 0.00 0.00 37.13 4.00
91 92 7.290248 TCGATCAGAAGAAAGGGAATATAACCT 59.710 37.037 0.00 0.00 39.21 3.50
92 93 7.442656 TCGATCAGAAGAAAGGGAATATAACC 58.557 38.462 0.00 0.00 0.00 2.85
93 94 9.495572 AATCGATCAGAAGAAAGGGAATATAAC 57.504 33.333 0.00 0.00 0.00 1.89
94 95 9.494271 CAATCGATCAGAAGAAAGGGAATATAA 57.506 33.333 0.00 0.00 0.00 0.98
95 96 8.870116 TCAATCGATCAGAAGAAAGGGAATATA 58.130 33.333 0.00 0.00 0.00 0.86
96 97 7.739825 TCAATCGATCAGAAGAAAGGGAATAT 58.260 34.615 0.00 0.00 0.00 1.28
97 98 7.124573 TCAATCGATCAGAAGAAAGGGAATA 57.875 36.000 0.00 0.00 0.00 1.75
98 99 5.994250 TCAATCGATCAGAAGAAAGGGAAT 58.006 37.500 0.00 0.00 0.00 3.01
99 100 5.420725 TCAATCGATCAGAAGAAAGGGAA 57.579 39.130 0.00 0.00 0.00 3.97
100 101 4.681781 GCTCAATCGATCAGAAGAAAGGGA 60.682 45.833 0.00 0.00 0.00 4.20
101 102 3.559242 GCTCAATCGATCAGAAGAAAGGG 59.441 47.826 0.00 0.00 0.00 3.95
102 103 4.440880 AGCTCAATCGATCAGAAGAAAGG 58.559 43.478 0.00 0.00 0.00 3.11
103 104 5.107824 TGAGCTCAATCGATCAGAAGAAAG 58.892 41.667 15.67 0.00 0.00 2.62
104 105 5.077134 TGAGCTCAATCGATCAGAAGAAA 57.923 39.130 15.67 0.00 0.00 2.52
105 106 4.725790 TGAGCTCAATCGATCAGAAGAA 57.274 40.909 15.67 0.00 0.00 2.52
106 107 4.725790 TTGAGCTCAATCGATCAGAAGA 57.274 40.909 25.16 0.00 30.21 2.87
107 108 4.270566 CCTTTGAGCTCAATCGATCAGAAG 59.729 45.833 28.89 18.64 35.55 2.85
108 109 4.186926 CCTTTGAGCTCAATCGATCAGAA 58.813 43.478 28.89 10.45 35.55 3.02
109 110 3.790091 CCTTTGAGCTCAATCGATCAGA 58.210 45.455 28.89 11.17 35.55 3.27
110 111 2.287373 GCCTTTGAGCTCAATCGATCAG 59.713 50.000 28.89 20.65 35.55 2.90
111 112 2.283298 GCCTTTGAGCTCAATCGATCA 58.717 47.619 28.89 12.62 35.55 2.92
112 113 1.601430 GGCCTTTGAGCTCAATCGATC 59.399 52.381 28.89 15.72 35.55 3.69
113 114 1.673168 GGCCTTTGAGCTCAATCGAT 58.327 50.000 28.89 0.00 35.55 3.59
114 115 0.392998 GGGCCTTTGAGCTCAATCGA 60.393 55.000 28.89 14.09 35.55 3.59
115 116 0.677731 TGGGCCTTTGAGCTCAATCG 60.678 55.000 28.89 21.34 41.30 3.34
116 117 3.271250 TGGGCCTTTGAGCTCAATC 57.729 52.632 28.89 19.53 41.30 2.67
120 121 2.570135 CTCTTATGGGCCTTTGAGCTC 58.430 52.381 6.82 6.82 0.00 4.09
121 122 1.213926 CCTCTTATGGGCCTTTGAGCT 59.786 52.381 4.53 0.00 0.00 4.09
122 123 1.212935 TCCTCTTATGGGCCTTTGAGC 59.787 52.381 4.53 0.00 0.00 4.26
123 124 2.158696 CCTCCTCTTATGGGCCTTTGAG 60.159 54.545 4.53 9.72 0.00 3.02
124 125 1.846439 CCTCCTCTTATGGGCCTTTGA 59.154 52.381 4.53 0.00 0.00 2.69
125 126 1.133668 CCCTCCTCTTATGGGCCTTTG 60.134 57.143 4.53 0.00 33.88 2.77
126 127 1.226311 CCCTCCTCTTATGGGCCTTT 58.774 55.000 4.53 0.00 33.88 3.11
127 128 0.346932 TCCCTCCTCTTATGGGCCTT 59.653 55.000 4.53 0.00 40.69 4.35
128 129 0.104725 CTCCCTCCTCTTATGGGCCT 60.105 60.000 4.53 0.00 40.69 5.19
129 130 0.104934 TCTCCCTCCTCTTATGGGCC 60.105 60.000 0.00 0.00 40.69 5.80
130 131 1.807814 TTCTCCCTCCTCTTATGGGC 58.192 55.000 0.00 0.00 40.69 5.36
131 132 3.582208 CAGATTCTCCCTCCTCTTATGGG 59.418 52.174 0.00 0.00 42.20 4.00
132 133 3.582208 CCAGATTCTCCCTCCTCTTATGG 59.418 52.174 0.00 0.00 0.00 2.74
133 134 4.230455 ACCAGATTCTCCCTCCTCTTATG 58.770 47.826 0.00 0.00 0.00 1.90
134 135 4.567987 ACCAGATTCTCCCTCCTCTTAT 57.432 45.455 0.00 0.00 0.00 1.73
135 136 4.033709 CAACCAGATTCTCCCTCCTCTTA 58.966 47.826 0.00 0.00 0.00 2.10
136 137 2.843113 CAACCAGATTCTCCCTCCTCTT 59.157 50.000 0.00 0.00 0.00 2.85
137 138 2.045047 TCAACCAGATTCTCCCTCCTCT 59.955 50.000 0.00 0.00 0.00 3.69
138 139 2.472029 TCAACCAGATTCTCCCTCCTC 58.528 52.381 0.00 0.00 0.00 3.71
139 140 2.649742 TCAACCAGATTCTCCCTCCT 57.350 50.000 0.00 0.00 0.00 3.69
140 141 3.941704 AATCAACCAGATTCTCCCTCC 57.058 47.619 0.00 0.00 43.42 4.30
141 142 4.642437 GGAAAATCAACCAGATTCTCCCTC 59.358 45.833 0.00 0.00 44.70 4.30
142 143 4.604156 GGAAAATCAACCAGATTCTCCCT 58.396 43.478 0.00 0.00 44.70 4.20
143 144 4.991153 GGAAAATCAACCAGATTCTCCC 57.009 45.455 0.00 0.00 44.70 4.30
152 153 4.125124 TCATTCCCTGGAAAATCAACCA 57.875 40.909 2.15 0.00 37.69 3.67
153 154 5.682234 AATCATTCCCTGGAAAATCAACC 57.318 39.130 2.15 0.00 37.69 3.77
154 155 9.918630 CATATAATCATTCCCTGGAAAATCAAC 57.081 33.333 2.15 0.00 37.69 3.18
155 156 9.092338 CCATATAATCATTCCCTGGAAAATCAA 57.908 33.333 2.15 0.00 37.69 2.57
156 157 8.455309 TCCATATAATCATTCCCTGGAAAATCA 58.545 33.333 2.15 0.00 37.69 2.57
157 158 8.884124 TCCATATAATCATTCCCTGGAAAATC 57.116 34.615 2.15 0.00 37.69 2.17
158 159 9.848238 AATCCATATAATCATTCCCTGGAAAAT 57.152 29.630 2.15 0.00 37.69 1.82
159 160 9.673283 AAATCCATATAATCATTCCCTGGAAAA 57.327 29.630 2.15 0.00 37.69 2.29
160 161 9.312904 GAAATCCATATAATCATTCCCTGGAAA 57.687 33.333 2.15 0.00 37.69 3.13
161 162 8.455309 TGAAATCCATATAATCATTCCCTGGAA 58.545 33.333 0.22 0.22 35.15 3.53
162 163 7.999042 TGAAATCCATATAATCATTCCCTGGA 58.001 34.615 0.00 0.00 35.89 3.86
163 164 8.654485 TTGAAATCCATATAATCATTCCCTGG 57.346 34.615 0.00 0.00 0.00 4.45
164 165 8.746530 CCTTGAAATCCATATAATCATTCCCTG 58.253 37.037 0.00 0.00 0.00 4.45
165 166 8.681584 TCCTTGAAATCCATATAATCATTCCCT 58.318 33.333 0.00 0.00 0.00 4.20
166 167 8.884124 TCCTTGAAATCCATATAATCATTCCC 57.116 34.615 0.00 0.00 0.00 3.97
167 168 8.964772 CCTCCTTGAAATCCATATAATCATTCC 58.035 37.037 0.00 0.00 0.00 3.01
168 169 9.745018 TCCTCCTTGAAATCCATATAATCATTC 57.255 33.333 0.00 0.00 0.00 2.67
177 178 9.793259 GTAACAATATCCTCCTTGAAATCCATA 57.207 33.333 0.00 0.00 0.00 2.74
178 179 7.725844 GGTAACAATATCCTCCTTGAAATCCAT 59.274 37.037 0.00 0.00 0.00 3.41
179 180 7.060421 GGTAACAATATCCTCCTTGAAATCCA 58.940 38.462 0.00 0.00 0.00 3.41
180 181 7.290813 AGGTAACAATATCCTCCTTGAAATCC 58.709 38.462 0.00 0.00 41.41 3.01
181 182 8.753497 AAGGTAACAATATCCTCCTTGAAATC 57.247 34.615 0.00 0.00 41.41 2.17
182 183 8.336235 TGAAGGTAACAATATCCTCCTTGAAAT 58.664 33.333 0.00 0.00 35.76 2.17
183 184 7.695055 TGAAGGTAACAATATCCTCCTTGAAA 58.305 34.615 0.00 0.00 35.76 2.69
184 185 7.265599 TGAAGGTAACAATATCCTCCTTGAA 57.734 36.000 0.00 0.00 35.76 2.69
185 186 6.884472 TGAAGGTAACAATATCCTCCTTGA 57.116 37.500 0.00 0.00 35.76 3.02
186 187 7.282585 TGATGAAGGTAACAATATCCTCCTTG 58.717 38.462 0.00 0.00 35.76 3.61
187 188 7.348274 TCTGATGAAGGTAACAATATCCTCCTT 59.652 37.037 0.00 0.00 37.89 3.36
188 189 6.846505 TCTGATGAAGGTAACAATATCCTCCT 59.153 38.462 0.00 0.00 41.41 3.69
189 190 7.067496 TCTGATGAAGGTAACAATATCCTCC 57.933 40.000 0.00 0.00 41.41 4.30
190 191 8.997323 CAATCTGATGAAGGTAACAATATCCTC 58.003 37.037 0.00 0.00 41.41 3.71
191 192 8.717717 TCAATCTGATGAAGGTAACAATATCCT 58.282 33.333 0.00 0.00 41.41 3.24
192 193 8.908786 TCAATCTGATGAAGGTAACAATATCC 57.091 34.615 0.00 0.00 41.41 2.59
195 196 9.904198 TCAATCAATCTGATGAAGGTAACAATA 57.096 29.630 0.00 0.00 37.15 1.90
196 197 8.812513 TCAATCAATCTGATGAAGGTAACAAT 57.187 30.769 0.00 0.00 37.15 2.71
197 198 8.812513 ATCAATCAATCTGATGAAGGTAACAA 57.187 30.769 0.00 0.00 37.15 2.83
198 199 9.904198 TTATCAATCAATCTGATGAAGGTAACA 57.096 29.630 0.00 0.00 37.15 2.41
201 202 9.551734 CAGTTATCAATCAATCTGATGAAGGTA 57.448 33.333 0.00 0.00 37.15 3.08
202 203 7.501559 CCAGTTATCAATCAATCTGATGAAGGT 59.498 37.037 0.00 0.00 37.15 3.50
203 204 7.501559 ACCAGTTATCAATCAATCTGATGAAGG 59.498 37.037 0.00 0.00 37.15 3.46
204 205 8.447924 ACCAGTTATCAATCAATCTGATGAAG 57.552 34.615 0.00 0.00 37.15 3.02
205 206 7.225341 CGACCAGTTATCAATCAATCTGATGAA 59.775 37.037 0.00 0.00 37.15 2.57
206 207 6.703165 CGACCAGTTATCAATCAATCTGATGA 59.297 38.462 0.00 0.00 37.15 2.92
207 208 6.481313 ACGACCAGTTATCAATCAATCTGATG 59.519 38.462 0.00 0.00 37.15 3.07
208 209 6.586344 ACGACCAGTTATCAATCAATCTGAT 58.414 36.000 0.00 0.00 39.09 2.90
209 210 5.977635 ACGACCAGTTATCAATCAATCTGA 58.022 37.500 0.00 0.00 0.00 3.27
210 211 5.051441 CGACGACCAGTTATCAATCAATCTG 60.051 44.000 0.00 0.00 0.00 2.90
211 212 5.043903 CGACGACCAGTTATCAATCAATCT 58.956 41.667 0.00 0.00 0.00 2.40
212 213 5.041287 TCGACGACCAGTTATCAATCAATC 58.959 41.667 0.00 0.00 0.00 2.67
213 214 5.006153 TCGACGACCAGTTATCAATCAAT 57.994 39.130 0.00 0.00 0.00 2.57
214 215 4.443913 TCGACGACCAGTTATCAATCAA 57.556 40.909 0.00 0.00 0.00 2.57
215 216 4.649088 ATCGACGACCAGTTATCAATCA 57.351 40.909 0.00 0.00 0.00 2.57
216 217 5.041287 TCAATCGACGACCAGTTATCAATC 58.959 41.667 0.00 0.00 0.00 2.67
217 218 4.804139 GTCAATCGACGACCAGTTATCAAT 59.196 41.667 0.00 0.00 31.07 2.57
218 219 4.171005 GTCAATCGACGACCAGTTATCAA 58.829 43.478 0.00 0.00 31.07 2.57
219 220 3.191791 TGTCAATCGACGACCAGTTATCA 59.808 43.478 12.85 0.00 45.80 2.15
220 221 3.766151 TGTCAATCGACGACCAGTTATC 58.234 45.455 12.85 0.00 45.80 1.75
221 222 3.861276 TGTCAATCGACGACCAGTTAT 57.139 42.857 12.85 0.00 45.80 1.89
222 223 3.311106 GTTGTCAATCGACGACCAGTTA 58.689 45.455 12.85 0.00 46.87 2.24
223 224 2.132762 GTTGTCAATCGACGACCAGTT 58.867 47.619 12.85 0.00 46.87 3.16
224 225 1.779569 GTTGTCAATCGACGACCAGT 58.220 50.000 12.85 0.00 46.87 4.00
229 230 2.228103 AGCAGTAGTTGTCAATCGACGA 59.772 45.455 0.00 0.00 45.80 4.20
230 231 2.596452 AGCAGTAGTTGTCAATCGACG 58.404 47.619 0.00 0.00 45.80 5.12
231 232 4.992381 AAAGCAGTAGTTGTCAATCGAC 57.008 40.909 0.00 0.00 42.93 4.20
232 233 5.049680 GGAAAAAGCAGTAGTTGTCAATCGA 60.050 40.000 0.00 0.00 0.00 3.59
233 234 5.147162 GGAAAAAGCAGTAGTTGTCAATCG 58.853 41.667 0.00 0.00 0.00 3.34
234 235 6.072112 TGGAAAAAGCAGTAGTTGTCAATC 57.928 37.500 0.00 0.00 0.00 2.67
235 236 5.594317 ACTGGAAAAAGCAGTAGTTGTCAAT 59.406 36.000 0.00 0.00 0.00 2.57
236 237 4.947388 ACTGGAAAAAGCAGTAGTTGTCAA 59.053 37.500 0.00 0.00 0.00 3.18
237 238 4.335315 CACTGGAAAAAGCAGTAGTTGTCA 59.665 41.667 0.00 0.00 0.00 3.58
238 239 4.574828 TCACTGGAAAAAGCAGTAGTTGTC 59.425 41.667 0.00 0.00 0.00 3.18
239 240 4.523083 TCACTGGAAAAAGCAGTAGTTGT 58.477 39.130 0.00 0.00 0.00 3.32
240 241 4.816385 TCTCACTGGAAAAAGCAGTAGTTG 59.184 41.667 0.00 0.00 0.00 3.16
241 242 5.036117 TCTCACTGGAAAAAGCAGTAGTT 57.964 39.130 0.00 0.00 0.00 2.24
242 243 4.689612 TCTCACTGGAAAAAGCAGTAGT 57.310 40.909 0.00 0.00 0.00 2.73
243 244 5.049129 CCTTTCTCACTGGAAAAAGCAGTAG 60.049 44.000 0.00 0.00 35.22 2.57
244 245 4.821805 CCTTTCTCACTGGAAAAAGCAGTA 59.178 41.667 0.00 0.00 35.22 2.74
245 246 3.633986 CCTTTCTCACTGGAAAAAGCAGT 59.366 43.478 0.00 0.00 35.22 4.40
246 247 3.885297 TCCTTTCTCACTGGAAAAAGCAG 59.115 43.478 0.00 0.00 35.22 4.24
247 248 3.897239 TCCTTTCTCACTGGAAAAAGCA 58.103 40.909 0.00 0.00 35.22 3.91
248 249 4.261783 CCTTCCTTTCTCACTGGAAAAAGC 60.262 45.833 0.00 0.00 39.10 3.51
249 250 5.133221 TCCTTCCTTTCTCACTGGAAAAAG 58.867 41.667 0.00 0.00 39.10 2.27
250 251 5.124036 TCCTTCCTTTCTCACTGGAAAAA 57.876 39.130 0.00 0.00 39.10 1.94
251 252 4.446311 CCTCCTTCCTTTCTCACTGGAAAA 60.446 45.833 0.00 0.00 39.10 2.29
252 253 3.073062 CCTCCTTCCTTTCTCACTGGAAA 59.927 47.826 0.00 0.00 39.10 3.13
253 254 2.639839 CCTCCTTCCTTTCTCACTGGAA 59.360 50.000 0.00 0.00 38.10 3.53
254 255 2.158158 TCCTCCTTCCTTTCTCACTGGA 60.158 50.000 0.00 0.00 0.00 3.86
255 256 2.260822 TCCTCCTTCCTTTCTCACTGG 58.739 52.381 0.00 0.00 0.00 4.00
256 257 3.307339 CCTTCCTCCTTCCTTTCTCACTG 60.307 52.174 0.00 0.00 0.00 3.66
257 258 2.909662 CCTTCCTCCTTCCTTTCTCACT 59.090 50.000 0.00 0.00 0.00 3.41
258 259 2.026729 CCCTTCCTCCTTCCTTTCTCAC 60.027 54.545 0.00 0.00 0.00 3.51
259 260 2.269940 CCCTTCCTCCTTCCTTTCTCA 58.730 52.381 0.00 0.00 0.00 3.27
260 261 1.562008 CCCCTTCCTCCTTCCTTTCTC 59.438 57.143 0.00 0.00 0.00 2.87
261 262 1.154434 TCCCCTTCCTCCTTCCTTTCT 59.846 52.381 0.00 0.00 0.00 2.52
262 263 1.670059 TCCCCTTCCTCCTTCCTTTC 58.330 55.000 0.00 0.00 0.00 2.62
263 264 2.209758 GATCCCCTTCCTCCTTCCTTT 58.790 52.381 0.00 0.00 0.00 3.11
264 265 1.371415 AGATCCCCTTCCTCCTTCCTT 59.629 52.381 0.00 0.00 0.00 3.36
265 266 1.031112 AGATCCCCTTCCTCCTTCCT 58.969 55.000 0.00 0.00 0.00 3.36
266 267 1.344496 TGAGATCCCCTTCCTCCTTCC 60.344 57.143 0.00 0.00 0.00 3.46
267 268 2.171659 GTTGAGATCCCCTTCCTCCTTC 59.828 54.545 0.00 0.00 0.00 3.46
268 269 2.200955 GTTGAGATCCCCTTCCTCCTT 58.799 52.381 0.00 0.00 0.00 3.36
269 270 1.081174 TGTTGAGATCCCCTTCCTCCT 59.919 52.381 0.00 0.00 0.00 3.69
270 271 1.584724 TGTTGAGATCCCCTTCCTCC 58.415 55.000 0.00 0.00 0.00 4.30
271 272 2.682269 GCTTGTTGAGATCCCCTTCCTC 60.682 54.545 0.00 0.00 0.00 3.71
272 273 1.283321 GCTTGTTGAGATCCCCTTCCT 59.717 52.381 0.00 0.00 0.00 3.36
273 274 1.683319 GGCTTGTTGAGATCCCCTTCC 60.683 57.143 0.00 0.00 0.00 3.46
274 275 1.004745 TGGCTTGTTGAGATCCCCTTC 59.995 52.381 0.00 0.00 0.00 3.46
275 276 1.075601 TGGCTTGTTGAGATCCCCTT 58.924 50.000 0.00 0.00 0.00 3.95
276 277 1.064166 CATGGCTTGTTGAGATCCCCT 60.064 52.381 0.00 0.00 0.00 4.79
277 278 1.396653 CATGGCTTGTTGAGATCCCC 58.603 55.000 0.00 0.00 0.00 4.81
278 279 1.064463 TCCATGGCTTGTTGAGATCCC 60.064 52.381 6.96 0.00 0.00 3.85
279 280 2.425143 TCCATGGCTTGTTGAGATCC 57.575 50.000 6.96 0.00 0.00 3.36
280 281 9.107177 CTTATATATCCATGGCTTGTTGAGATC 57.893 37.037 6.96 0.00 0.00 2.75
281 282 8.051535 CCTTATATATCCATGGCTTGTTGAGAT 58.948 37.037 6.96 0.00 0.00 2.75
282 283 7.017551 ACCTTATATATCCATGGCTTGTTGAGA 59.982 37.037 6.96 0.00 0.00 3.27
283 284 7.170965 ACCTTATATATCCATGGCTTGTTGAG 58.829 38.462 6.96 0.26 0.00 3.02
284 285 7.090319 ACCTTATATATCCATGGCTTGTTGA 57.910 36.000 6.96 0.00 0.00 3.18
285 286 7.066284 GCTACCTTATATATCCATGGCTTGTTG 59.934 40.741 6.96 0.00 0.00 3.33
286 287 7.112779 GCTACCTTATATATCCATGGCTTGTT 58.887 38.462 6.96 0.00 0.00 2.83
287 288 6.353082 GGCTACCTTATATATCCATGGCTTGT 60.353 42.308 6.96 0.00 0.00 3.16
288 289 6.058183 GGCTACCTTATATATCCATGGCTTG 58.942 44.000 6.96 0.00 0.00 4.01
289 290 5.731187 TGGCTACCTTATATATCCATGGCTT 59.269 40.000 6.96 0.00 0.00 4.35
290 291 5.131142 GTGGCTACCTTATATATCCATGGCT 59.869 44.000 6.96 0.00 0.00 4.75
291 292 5.104527 TGTGGCTACCTTATATATCCATGGC 60.105 44.000 6.96 0.00 0.00 4.40
292 293 6.560003 TGTGGCTACCTTATATATCCATGG 57.440 41.667 4.97 4.97 0.00 3.66
293 294 7.882791 TGTTTGTGGCTACCTTATATATCCATG 59.117 37.037 0.00 0.00 0.00 3.66
294 295 7.984475 TGTTTGTGGCTACCTTATATATCCAT 58.016 34.615 0.00 0.00 0.00 3.41
295 296 7.381789 TGTTTGTGGCTACCTTATATATCCA 57.618 36.000 0.00 0.00 0.00 3.41
296 297 7.553044 GGATGTTTGTGGCTACCTTATATATCC 59.447 40.741 0.00 0.00 0.00 2.59
297 298 8.100791 TGGATGTTTGTGGCTACCTTATATATC 58.899 37.037 0.00 0.00 0.00 1.63
298 299 7.984475 TGGATGTTTGTGGCTACCTTATATAT 58.016 34.615 0.00 0.00 0.00 0.86
299 300 7.381789 TGGATGTTTGTGGCTACCTTATATA 57.618 36.000 0.00 0.00 0.00 0.86
300 301 6.260700 TGGATGTTTGTGGCTACCTTATAT 57.739 37.500 0.00 0.00 0.00 0.86
301 302 5.397447 CCTGGATGTTTGTGGCTACCTTATA 60.397 44.000 0.00 0.00 0.00 0.98
302 303 4.526970 CTGGATGTTTGTGGCTACCTTAT 58.473 43.478 0.00 0.00 0.00 1.73
303 304 3.308117 CCTGGATGTTTGTGGCTACCTTA 60.308 47.826 0.00 0.00 0.00 2.69
325 326 2.305052 GGGGGTACATAGTGGCCTAATC 59.695 54.545 3.32 0.00 0.00 1.75
329 330 0.694444 CTGGGGGTACATAGTGGCCT 60.694 60.000 3.32 0.00 0.00 5.19
338 339 1.222387 GCAATACGCTGGGGGTACA 59.778 57.895 0.00 0.00 37.77 2.90
339 340 4.136250 GCAATACGCTGGGGGTAC 57.864 61.111 0.00 0.00 37.77 3.34
348 349 1.137404 CCAGGTTGCAGCAATACGC 59.863 57.895 11.96 0.00 42.91 4.42
349 350 0.168788 CACCAGGTTGCAGCAATACG 59.831 55.000 11.96 2.43 0.00 3.06
350 351 0.109132 GCACCAGGTTGCAGCAATAC 60.109 55.000 11.96 7.88 42.49 1.89
373 374 1.213013 CCTCTGTCGCTAGCGTTGT 59.787 57.895 34.10 0.00 40.74 3.32
386 387 2.287103 CACACATGCGAATCATCCTCTG 59.713 50.000 0.00 0.00 31.79 3.35
391 392 0.734309 TGCCACACATGCGAATCATC 59.266 50.000 0.00 0.00 31.79 2.92
395 396 1.213537 GCTTGCCACACATGCGAAT 59.786 52.632 0.00 0.00 39.36 3.34
400 401 1.705256 GATGTTGCTTGCCACACATG 58.295 50.000 1.62 0.00 30.59 3.21
405 406 0.955428 TCTCCGATGTTGCTTGCCAC 60.955 55.000 0.00 0.00 0.00 5.01
421 422 1.137825 CCACGTCTCCGCTCTTCTC 59.862 63.158 0.00 0.00 37.70 2.87
453 454 3.793775 TTTCGGCGGCGTTGACTGA 62.794 57.895 31.06 6.96 0.00 3.41
462 463 3.039588 TGTCTTCGTTTCGGCGGC 61.040 61.111 7.21 0.00 0.00 6.53
465 466 0.232303 CAGTGTGTCTTCGTTTCGGC 59.768 55.000 0.00 0.00 0.00 5.54
483 484 2.422597 CGAGTCTAATGGTTGGTTGCA 58.577 47.619 0.00 0.00 0.00 4.08
524 525 2.372690 CGTGAGGCTTGGTTCGTCG 61.373 63.158 0.00 0.00 0.00 5.12
528 529 1.087501 GGATTCGTGAGGCTTGGTTC 58.912 55.000 0.00 0.00 0.00 3.62
541 542 1.134189 GTTAGGGAAGGGGTGGATTCG 60.134 57.143 0.00 0.00 0.00 3.34
547 548 0.924226 ATGGGGTTAGGGAAGGGGTG 60.924 60.000 0.00 0.00 0.00 4.61
560 561 2.094494 TGGTGTTTGGGGATGGGGT 61.094 57.895 0.00 0.00 0.00 4.95
610 611 1.074951 GGTTGAGGGTTGGGGTGAG 59.925 63.158 0.00 0.00 0.00 3.51
620 621 1.580845 CTGCTGCTTTCGGTTGAGGG 61.581 60.000 0.00 0.00 0.00 4.30
664 671 2.728007 GATTTGGGGAAGGTGGAGAAG 58.272 52.381 0.00 0.00 0.00 2.85
685 692 1.550976 TCTTCGGGAAAGAGAAGAGGC 59.449 52.381 4.04 0.00 45.33 4.70
719 726 1.135888 GTAACAATTTCACCGCCCGTC 60.136 52.381 0.00 0.00 0.00 4.79
721 729 0.169451 GGTAACAATTTCACCGCCCG 59.831 55.000 0.00 0.00 0.00 6.13
757 765 2.375766 CGTGTCGGTTCAGCTCTGC 61.376 63.158 0.00 0.00 0.00 4.26
777 785 1.617947 CCCCTAGCTTGCGACTTCCT 61.618 60.000 0.00 0.00 0.00 3.36
780 794 2.269241 GCCCCTAGCTTGCGACTT 59.731 61.111 0.00 0.00 38.99 3.01
808 822 0.950555 CGTGATATCGCACCATGGGG 60.951 60.000 18.09 14.63 41.29 4.96
819 834 1.922570 ACGCTGGTCAACGTGATATC 58.077 50.000 0.00 0.00 41.76 1.63
859 874 2.105128 CCTCCCAGCGCTTCTACG 59.895 66.667 7.50 0.00 0.00 3.51
863 878 4.847444 GAGCCCTCCCAGCGCTTC 62.847 72.222 7.50 0.00 31.61 3.86
867 883 3.391665 AAATCGAGCCCTCCCAGCG 62.392 63.158 0.00 0.00 34.64 5.18
881 897 5.065346 GCAGTTACTAAGCTCCCAAGAAATC 59.935 44.000 0.00 0.00 0.00 2.17
888 904 1.066143 GCTGCAGTTACTAAGCTCCCA 60.066 52.381 16.64 0.00 32.82 4.37
905 921 1.588824 TTCGATGCAAGGCAAGGCTG 61.589 55.000 0.00 0.00 43.62 4.85
906 922 1.303561 TTCGATGCAAGGCAAGGCT 60.304 52.632 0.00 0.00 43.62 4.58
907 923 1.138247 CTTCGATGCAAGGCAAGGC 59.862 57.895 0.00 0.00 43.62 4.35
908 924 1.660560 CCCTTCGATGCAAGGCAAGG 61.661 60.000 9.19 9.19 43.62 3.61
909 925 1.805254 CCCTTCGATGCAAGGCAAG 59.195 57.895 0.00 0.00 43.62 4.01
910 926 2.342650 GCCCTTCGATGCAAGGCAA 61.343 57.895 10.79 0.00 43.62 4.52
911 927 2.751436 GCCCTTCGATGCAAGGCA 60.751 61.111 10.79 0.00 41.69 4.75
1107 1132 1.904990 GCTGGTCCTTCCTGTCTCCC 61.905 65.000 0.00 0.00 37.45 4.30
1214 1239 1.472878 CGTCCTCCTTCTTGACATCGA 59.527 52.381 0.00 0.00 0.00 3.59
1218 1243 0.178944 TCCCGTCCTCCTTCTTGACA 60.179 55.000 0.00 0.00 0.00 3.58
1270 1304 4.509737 GGAGTACCCGGAGTGCGC 62.510 72.222 0.73 0.00 35.99 6.09
1324 1358 2.346884 CGTAGAAGACGTTCACCGC 58.653 57.895 0.00 0.00 46.86 5.68
1494 1528 6.750148 ACTGAAATTCGACCCTATAGCTTAG 58.250 40.000 0.00 0.00 0.00 2.18
1495 1529 6.726490 ACTGAAATTCGACCCTATAGCTTA 57.274 37.500 0.00 0.00 0.00 3.09
1496 1530 5.615925 ACTGAAATTCGACCCTATAGCTT 57.384 39.130 0.00 0.00 0.00 3.74
1505 1539 6.402226 CCAGCTTAACTAACTGAAATTCGACC 60.402 42.308 0.00 0.00 33.10 4.79
1767 2935 0.687354 AACCATCAGAACAGACCGCT 59.313 50.000 0.00 0.00 0.00 5.52
1769 2937 1.001974 TGGAACCATCAGAACAGACCG 59.998 52.381 0.00 0.00 0.00 4.79
1773 2941 4.916983 TTTGTTGGAACCATCAGAACAG 57.083 40.909 5.04 0.00 33.51 3.16
1775 2943 5.241506 TCAGATTTGTTGGAACCATCAGAAC 59.758 40.000 5.04 1.21 0.00 3.01
1821 2992 0.524392 CGTGGACGATCTCTGCTGTC 60.524 60.000 0.00 0.00 43.02 3.51
1886 3057 6.151817 GGTTGCTTTATCAGAACTGGATTTCT 59.848 38.462 1.93 0.00 36.18 2.52
1887 3058 6.325596 GGTTGCTTTATCAGAACTGGATTTC 58.674 40.000 1.93 0.00 0.00 2.17
1891 3062 3.007506 TCGGTTGCTTTATCAGAACTGGA 59.992 43.478 1.93 0.00 0.00 3.86
1897 3068 3.973206 TTCCTCGGTTGCTTTATCAGA 57.027 42.857 0.00 0.00 0.00 3.27
1898 3069 3.751175 TGTTTCCTCGGTTGCTTTATCAG 59.249 43.478 0.00 0.00 0.00 2.90
1906 3077 4.625311 CCATTATTTTGTTTCCTCGGTTGC 59.375 41.667 0.00 0.00 0.00 4.17
1928 3099 7.279758 GCCAATCTCAAACATCTAGCTATATCC 59.720 40.741 0.00 0.00 0.00 2.59
1931 3102 7.015584 TCTGCCAATCTCAAACATCTAGCTATA 59.984 37.037 0.00 0.00 0.00 1.31
1932 3103 5.933617 TGCCAATCTCAAACATCTAGCTAT 58.066 37.500 0.00 0.00 0.00 2.97
1985 3357 3.099905 TCTTCCTTCTCCATGACGTGAT 58.900 45.455 0.00 0.00 0.00 3.06
1986 3358 2.525368 TCTTCCTTCTCCATGACGTGA 58.475 47.619 0.00 0.00 0.00 4.35
2109 3566 0.035317 AGGAGCACGAGACATGCAAA 59.965 50.000 0.00 0.00 45.92 3.68
2129 3586 6.985188 AATGTAGTGTGGTGTGATCATAAC 57.015 37.500 0.00 0.00 0.00 1.89
2158 3615 3.474600 CCCTGAAGATCATGCTACAAGG 58.525 50.000 0.00 0.00 0.00 3.61
2170 3627 4.763355 TGGTATATAGTGCCCCTGAAGAT 58.237 43.478 0.00 0.00 0.00 2.40
2261 3720 1.299850 GCACGGCTGTTGGTTTTCC 60.300 57.895 0.00 0.00 41.14 3.13
2262 3721 1.733526 AGCACGGCTGTTGGTTTTC 59.266 52.632 0.00 0.00 37.57 2.29
2263 3722 3.933515 AGCACGGCTGTTGGTTTT 58.066 50.000 0.00 0.00 37.57 2.43
2272 3731 2.225791 TAGTCGATTGCAGCACGGCT 62.226 55.000 15.86 15.86 43.99 5.52
2273 3732 1.358725 TTAGTCGATTGCAGCACGGC 61.359 55.000 1.88 1.88 0.00 5.68
2274 3733 0.370273 GTTAGTCGATTGCAGCACGG 59.630 55.000 0.00 0.00 0.00 4.94
2275 3734 0.023732 CGTTAGTCGATTGCAGCACG 59.976 55.000 0.00 0.00 42.86 5.34
2276 3735 0.247301 GCGTTAGTCGATTGCAGCAC 60.247 55.000 0.00 0.00 42.86 4.40
2277 3736 0.389817 AGCGTTAGTCGATTGCAGCA 60.390 50.000 0.00 0.00 42.86 4.41
2278 3737 0.025513 CAGCGTTAGTCGATTGCAGC 59.974 55.000 0.00 0.00 42.86 5.25
2279 3738 0.025513 GCAGCGTTAGTCGATTGCAG 59.974 55.000 0.00 0.00 44.67 4.41
2280 3739 2.078226 GCAGCGTTAGTCGATTGCA 58.922 52.632 0.00 0.00 44.67 4.08
2281 3740 0.025513 CTGCAGCGTTAGTCGATTGC 59.974 55.000 0.00 9.08 45.12 3.56
2282 3741 1.350193 ACTGCAGCGTTAGTCGATTG 58.650 50.000 15.27 0.00 42.86 2.67
2283 3742 2.080286 AACTGCAGCGTTAGTCGATT 57.920 45.000 15.27 0.00 42.86 3.34
2284 3743 2.798680 CTAACTGCAGCGTTAGTCGAT 58.201 47.619 15.27 0.00 40.76 3.59
2285 3744 2.257974 CTAACTGCAGCGTTAGTCGA 57.742 50.000 15.27 0.00 40.76 4.20
2297 3756 0.519077 GCACCTCTGCAACTAACTGC 59.481 55.000 0.00 0.00 43.62 4.40
2298 3757 2.175878 AGCACCTCTGCAACTAACTG 57.824 50.000 0.00 0.00 46.97 3.16
2299 3758 3.515502 TCATAGCACCTCTGCAACTAACT 59.484 43.478 0.00 0.00 46.97 2.24
2300 3759 3.619038 GTCATAGCACCTCTGCAACTAAC 59.381 47.826 0.00 0.00 46.97 2.34
2301 3760 3.515502 AGTCATAGCACCTCTGCAACTAA 59.484 43.478 0.00 0.00 46.97 2.24
2302 3761 3.099905 AGTCATAGCACCTCTGCAACTA 58.900 45.455 0.00 0.00 46.97 2.24
2303 3762 1.905215 AGTCATAGCACCTCTGCAACT 59.095 47.619 0.00 0.00 46.97 3.16
2304 3763 2.005451 CAGTCATAGCACCTCTGCAAC 58.995 52.381 0.00 0.00 46.97 4.17
2305 3764 1.901833 TCAGTCATAGCACCTCTGCAA 59.098 47.619 0.00 0.00 46.97 4.08
2306 3765 1.205655 GTCAGTCATAGCACCTCTGCA 59.794 52.381 0.00 0.00 46.97 4.41
2307 3766 1.205655 TGTCAGTCATAGCACCTCTGC 59.794 52.381 0.00 0.00 44.63 4.26
2308 3767 2.495270 AGTGTCAGTCATAGCACCTCTG 59.505 50.000 0.00 0.00 32.75 3.35
2309 3768 2.495270 CAGTGTCAGTCATAGCACCTCT 59.505 50.000 0.00 0.00 32.75 3.69
2310 3769 2.417924 CCAGTGTCAGTCATAGCACCTC 60.418 54.545 0.00 0.00 32.75 3.85
2311 3770 1.552337 CCAGTGTCAGTCATAGCACCT 59.448 52.381 0.00 0.00 32.75 4.00
2312 3771 1.406069 CCCAGTGTCAGTCATAGCACC 60.406 57.143 0.00 0.00 32.75 5.01
2313 3772 1.406069 CCCCAGTGTCAGTCATAGCAC 60.406 57.143 0.00 0.00 0.00 4.40
2314 3773 0.904649 CCCCAGTGTCAGTCATAGCA 59.095 55.000 0.00 0.00 0.00 3.49
2315 3774 0.905357 ACCCCAGTGTCAGTCATAGC 59.095 55.000 0.00 0.00 0.00 2.97
2316 3775 3.366396 ACTACCCCAGTGTCAGTCATAG 58.634 50.000 0.00 0.00 35.62 2.23
2317 3776 3.468071 ACTACCCCAGTGTCAGTCATA 57.532 47.619 0.00 0.00 35.62 2.15
2318 3777 2.303022 CAACTACCCCAGTGTCAGTCAT 59.697 50.000 0.00 0.00 37.63 3.06
2319 3778 1.691976 CAACTACCCCAGTGTCAGTCA 59.308 52.381 0.00 0.00 37.63 3.41
2320 3779 1.608283 GCAACTACCCCAGTGTCAGTC 60.608 57.143 0.00 0.00 37.63 3.51
2321 3780 0.396811 GCAACTACCCCAGTGTCAGT 59.603 55.000 0.00 0.00 37.63 3.41
2322 3781 0.396435 TGCAACTACCCCAGTGTCAG 59.604 55.000 0.00 0.00 37.63 3.51
2323 3782 0.396435 CTGCAACTACCCCAGTGTCA 59.604 55.000 0.00 0.00 37.63 3.58
2324 3783 0.685097 TCTGCAACTACCCCAGTGTC 59.315 55.000 0.00 0.00 37.63 3.67
2325 3784 0.687354 CTCTGCAACTACCCCAGTGT 59.313 55.000 0.00 0.00 37.63 3.55
2326 3785 0.036010 CCTCTGCAACTACCCCAGTG 60.036 60.000 0.00 0.00 37.63 3.66
2327 3786 0.473886 ACCTCTGCAACTACCCCAGT 60.474 55.000 0.00 0.00 40.05 4.00
2328 3787 0.036010 CACCTCTGCAACTACCCCAG 60.036 60.000 0.00 0.00 0.00 4.45
2329 3788 2.066340 CACCTCTGCAACTACCCCA 58.934 57.895 0.00 0.00 0.00 4.96
2330 3789 1.377333 GCACCTCTGCAACTACCCC 60.377 63.158 0.00 0.00 43.62 4.95
2331 3790 0.674895 CAGCACCTCTGCAACTACCC 60.675 60.000 0.00 0.00 46.97 3.69
2332 3791 0.674895 CCAGCACCTCTGCAACTACC 60.675 60.000 0.00 0.00 46.97 3.18
2333 3792 0.035458 ACCAGCACCTCTGCAACTAC 59.965 55.000 0.00 0.00 46.97 2.73
2351 3897 1.066858 TGGGATTTCTCTCGCACAGAC 60.067 52.381 0.00 0.00 33.65 3.51
2354 3900 1.554617 TGATGGGATTTCTCTCGCACA 59.445 47.619 0.00 0.00 40.39 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.