Multiple sequence alignment - TraesCS1B01G073900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G073900 chr1B 100.000 2408 0 0 1 2408 57628843 57631250 0.000000e+00 4447.0
1 TraesCS1B01G073900 chr1B 91.206 887 39 16 908 1783 57686340 57687198 0.000000e+00 1170.0
2 TraesCS1B01G073900 chr1B 86.996 1092 71 28 744 1798 57643400 57644457 0.000000e+00 1164.0
3 TraesCS1B01G073900 chr1B 89.175 776 48 19 718 1465 57682350 57683117 0.000000e+00 935.0
4 TraesCS1B01G073900 chr1B 85.171 526 42 18 915 1409 57705786 57706306 7.680000e-140 507.0
5 TraesCS1B01G073900 chr1B 90.439 387 27 4 1921 2307 57683330 57683706 3.570000e-138 501.0
6 TraesCS1B01G073900 chr1B 87.586 435 45 3 1887 2320 57647584 57648010 1.660000e-136 496.0
7 TraesCS1B01G073900 chr1B 88.321 411 41 3 1872 2282 57687195 57687598 1.000000e-133 486.0
8 TraesCS1B01G073900 chr1B 88.398 362 28 9 199 558 57681914 57682263 7.960000e-115 424.0
9 TraesCS1B01G073900 chr1B 97.802 91 2 0 2318 2408 37692476 37692566 8.910000e-35 158.0
10 TraesCS1B01G073900 chr1B 87.500 128 15 1 2281 2408 633269517 633269643 1.930000e-31 147.0
11 TraesCS1B01G073900 chr1B 93.750 64 3 1 1796 1858 32137722 32137659 7.090000e-16 95.3
12 TraesCS1B01G073900 chr1B 87.500 72 8 1 2014 2084 608851020 608850949 5.520000e-12 82.4
13 TraesCS1B01G073900 chr1D 89.655 725 38 17 718 1409 37887537 37888257 0.000000e+00 889.0
14 TraesCS1B01G073900 chr1D 86.813 91 12 0 589 679 50949024 50949114 4.240000e-18 102.0
15 TraesCS1B01G073900 chr1D 89.091 55 5 1 27 81 319529548 319529601 1.540000e-07 67.6
16 TraesCS1B01G073900 chr1A 86.139 707 47 25 744 1409 36823644 36824340 0.000000e+00 715.0
17 TraesCS1B01G073900 chr1A 84.615 767 44 27 718 1433 36793963 36794706 0.000000e+00 695.0
18 TraesCS1B01G073900 chr1A 84.699 183 22 6 1502 1682 36794739 36794917 6.840000e-41 178.0
19 TraesCS1B01G073900 chr1A 86.047 86 12 0 589 674 537555848 537555763 2.550000e-15 93.5
20 TraesCS1B01G073900 chr7B 97.872 94 2 0 2315 2408 152486875 152486968 1.920000e-36 163.0
21 TraesCS1B01G073900 chr7B 90.110 91 9 0 589 679 538216826 538216736 4.210000e-23 119.0
22 TraesCS1B01G073900 chr7B 93.056 72 5 0 588 659 531178390 531178461 3.270000e-19 106.0
23 TraesCS1B01G073900 chr6B 98.901 91 1 0 2317 2407 632238435 632238345 1.920000e-36 163.0
24 TraesCS1B01G073900 chr6B 91.860 86 7 0 589 674 33523557 33523472 1.170000e-23 121.0
25 TraesCS1B01G073900 chr6A 96.809 94 3 0 2315 2408 35575718 35575811 8.910000e-35 158.0
26 TraesCS1B01G073900 chr6A 86.517 89 12 0 589 677 466089890 466089978 5.480000e-17 99.0
27 TraesCS1B01G073900 chr6A 86.905 84 11 0 588 671 104518686 104518769 7.090000e-16 95.3
28 TraesCS1B01G073900 chr6A 87.838 74 9 0 2014 2087 487781785 487781858 1.190000e-13 87.9
29 TraesCS1B01G073900 chr5A 97.802 91 2 0 2318 2408 9839722 9839812 8.910000e-35 158.0
30 TraesCS1B01G073900 chr3A 97.802 91 2 0 2318 2408 573109698 573109608 8.910000e-35 158.0
31 TraesCS1B01G073900 chr3A 90.123 81 7 1 589 669 60287967 60288046 1.180000e-18 104.0
32 TraesCS1B01G073900 chr2A 97.802 91 2 0 2318 2408 763213821 763213731 8.910000e-35 158.0
33 TraesCS1B01G073900 chr2A 88.764 89 10 0 587 675 565275787 565275699 2.530000e-20 110.0
34 TraesCS1B01G073900 chr2A 88.406 69 7 1 2022 2090 516417182 516417115 5.520000e-12 82.4
35 TraesCS1B01G073900 chr2A 85.333 75 10 1 2014 2087 29595392 29595318 2.570000e-10 76.8
36 TraesCS1B01G073900 chr3B 96.703 91 3 0 2318 2408 798951118 798951028 4.150000e-33 152.0
37 TraesCS1B01G073900 chr7A 88.506 87 10 0 589 675 9507150 9507236 3.270000e-19 106.0
38 TraesCS1B01G073900 chr5B 90.789 76 7 0 584 659 502085167 502085242 4.240000e-18 102.0
39 TraesCS1B01G073900 chr5B 88.095 84 8 1 578 659 377390631 377390714 5.480000e-17 99.0
40 TraesCS1B01G073900 chr4D 87.500 88 11 0 587 674 231493864 231493777 4.240000e-18 102.0
41 TraesCS1B01G073900 chr4D 98.246 57 1 0 589 645 59066367 59066423 1.520000e-17 100.0
42 TraesCS1B01G073900 chr4D 94.643 56 3 0 588 643 78845950 78845895 1.190000e-13 87.9
43 TraesCS1B01G073900 chr4D 93.103 58 4 0 589 646 498016028 498016085 4.270000e-13 86.1
44 TraesCS1B01G073900 chr4D 89.583 48 5 0 589 636 134687645 134687598 7.190000e-06 62.1
45 TraesCS1B01G073900 chr6D 87.356 87 11 0 589 675 216847363 216847277 1.520000e-17 100.0
46 TraesCS1B01G073900 chr6D 95.161 62 3 0 1798 1859 13787989 13787928 5.480000e-17 99.0
47 TraesCS1B01G073900 chr6D 95.161 62 3 0 1798 1859 13802684 13802623 5.480000e-17 99.0
48 TraesCS1B01G073900 chr6D 95.161 62 3 0 1798 1859 13811762 13811701 5.480000e-17 99.0
49 TraesCS1B01G073900 chr6D 91.549 71 6 0 589 659 401201628 401201698 5.480000e-17 99.0
50 TraesCS1B01G073900 chr6D 95.082 61 3 0 1799 1859 13809494 13809434 1.970000e-16 97.1
51 TraesCS1B01G073900 chr6D 93.548 62 4 0 1798 1859 13772390 13772329 2.550000e-15 93.5
52 TraesCS1B01G073900 chr6D 94.915 59 3 0 1801 1859 13785717 13785659 2.550000e-15 93.5
53 TraesCS1B01G073900 chr6D 91.071 56 5 0 587 642 10116561 10116616 2.570000e-10 76.8
54 TraesCS1B01G073900 chr4B 91.667 72 6 0 588 659 358445799 358445870 1.520000e-17 100.0
55 TraesCS1B01G073900 chr4B 86.364 88 12 0 589 676 323791049 323790962 1.970000e-16 97.1
56 TraesCS1B01G073900 chr4B 86.364 88 12 0 587 674 646595239 646595152 1.970000e-16 97.1
57 TraesCS1B01G073900 chr4B 95.000 60 3 0 1800 1859 657251812 657251753 7.090000e-16 95.3
58 TraesCS1B01G073900 chr4B 87.324 71 7 2 2022 2091 615383485 615383554 1.980000e-11 80.5
59 TraesCS1B01G073900 chrUn 95.161 62 3 0 1798 1859 362647006 362646945 5.480000e-17 99.0
60 TraesCS1B01G073900 chr5D 86.517 89 12 0 589 677 76023636 76023548 5.480000e-17 99.0
61 TraesCS1B01G073900 chr5D 90.141 71 7 0 2014 2084 9209575 9209505 2.550000e-15 93.5
62 TraesCS1B01G073900 chr3D 91.935 62 5 0 584 645 25405713 25405774 1.190000e-13 87.9
63 TraesCS1B01G073900 chr3D 88.235 68 8 0 608 675 542394912 542394845 5.520000e-12 82.4
64 TraesCS1B01G073900 chr3D 82.759 87 15 0 589 675 539453688 539453774 7.140000e-11 78.7
65 TraesCS1B01G073900 chr2D 92.063 63 3 2 582 643 324279636 324279575 1.190000e-13 87.9
66 TraesCS1B01G073900 chr2D 89.091 55 5 1 27 81 327320815 327320762 1.540000e-07 67.6
67 TraesCS1B01G073900 chr2D 87.500 56 4 3 27 81 299657981 299658034 7.190000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G073900 chr1B 57628843 57631250 2407 False 4447.0 4447 100.0000 1 2408 1 chr1B.!!$F2 2407
1 TraesCS1B01G073900 chr1B 57643400 57648010 4610 False 830.0 1164 87.2910 744 2320 2 chr1B.!!$F5 1576
2 TraesCS1B01G073900 chr1B 57681914 57687598 5684 False 703.2 1170 89.5078 199 2307 5 chr1B.!!$F6 2108
3 TraesCS1B01G073900 chr1B 57705786 57706306 520 False 507.0 507 85.1710 915 1409 1 chr1B.!!$F3 494
4 TraesCS1B01G073900 chr1D 37887537 37888257 720 False 889.0 889 89.6550 718 1409 1 chr1D.!!$F1 691
5 TraesCS1B01G073900 chr1A 36823644 36824340 696 False 715.0 715 86.1390 744 1409 1 chr1A.!!$F1 665
6 TraesCS1B01G073900 chr1A 36793963 36794917 954 False 436.5 695 84.6570 718 1682 2 chr1A.!!$F2 964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 592 0.45462 GCACGGTCGTCACTGACTAG 60.455 60.0 7.58 0.0 38.91 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 5685 0.108774 GCAGAGGCCAGGGTTATACC 59.891 60.0 5.01 0.0 37.6 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.987403 AGCTCACCCAAAACCTAAAATAAA 57.013 33.333 0.00 0.00 0.00 1.40
25 26 7.368198 AGCTCACCCAAAACCTAAAATAAAA 57.632 32.000 0.00 0.00 0.00 1.52
26 27 7.214381 AGCTCACCCAAAACCTAAAATAAAAC 58.786 34.615 0.00 0.00 0.00 2.43
27 28 7.070696 AGCTCACCCAAAACCTAAAATAAAACT 59.929 33.333 0.00 0.00 0.00 2.66
28 29 7.170828 GCTCACCCAAAACCTAAAATAAAACTG 59.829 37.037 0.00 0.00 0.00 3.16
29 30 8.080363 TCACCCAAAACCTAAAATAAAACTGT 57.920 30.769 0.00 0.00 0.00 3.55
30 31 7.982354 TCACCCAAAACCTAAAATAAAACTGTG 59.018 33.333 0.00 0.00 0.00 3.66
31 32 7.766738 CACCCAAAACCTAAAATAAAACTGTGT 59.233 33.333 0.00 0.00 0.00 3.72
32 33 7.982919 ACCCAAAACCTAAAATAAAACTGTGTC 59.017 33.333 0.00 0.00 0.00 3.67
33 34 8.201464 CCCAAAACCTAAAATAAAACTGTGTCT 58.799 33.333 0.00 0.00 0.00 3.41
38 39 9.841295 AACCTAAAATAAAACTGTGTCTAGACA 57.159 29.630 21.74 21.74 39.32 3.41
39 40 9.841295 ACCTAAAATAAAACTGTGTCTAGACAA 57.159 29.630 26.74 15.51 43.77 3.18
47 48 8.742554 AAAACTGTGTCTAGACAAAACAAAAG 57.257 30.769 26.74 16.19 43.77 2.27
48 49 6.436843 ACTGTGTCTAGACAAAACAAAAGG 57.563 37.500 26.74 10.48 43.77 3.11
49 50 6.177610 ACTGTGTCTAGACAAAACAAAAGGA 58.822 36.000 26.74 0.00 43.77 3.36
50 51 6.657541 ACTGTGTCTAGACAAAACAAAAGGAA 59.342 34.615 26.74 0.00 43.77 3.36
51 52 7.175990 ACTGTGTCTAGACAAAACAAAAGGAAA 59.824 33.333 26.74 0.00 43.77 3.13
52 53 8.062065 TGTGTCTAGACAAAACAAAAGGAAAT 57.938 30.769 26.74 0.00 43.77 2.17
53 54 9.179909 TGTGTCTAGACAAAACAAAAGGAAATA 57.820 29.630 26.74 0.00 43.77 1.40
54 55 9.447040 GTGTCTAGACAAAACAAAAGGAAATAC 57.553 33.333 26.74 4.90 43.77 1.89
55 56 8.626526 TGTCTAGACAAAACAAAAGGAAATACC 58.373 33.333 23.24 0.00 38.56 2.73
82 83 8.773404 AACTGTAACTTCTTTATACGATTGCT 57.227 30.769 0.00 0.00 0.00 3.91
83 84 8.773404 ACTGTAACTTCTTTATACGATTGCTT 57.227 30.769 0.00 0.00 0.00 3.91
84 85 9.216117 ACTGTAACTTCTTTATACGATTGCTTT 57.784 29.630 0.00 0.00 0.00 3.51
95 96 6.944557 ATACGATTGCTTTTAAGTTTTGGC 57.055 33.333 0.00 0.00 0.00 4.52
96 97 4.944048 ACGATTGCTTTTAAGTTTTGGCT 58.056 34.783 0.00 0.00 0.00 4.75
97 98 4.982295 ACGATTGCTTTTAAGTTTTGGCTC 59.018 37.500 0.00 0.00 0.00 4.70
98 99 5.221244 ACGATTGCTTTTAAGTTTTGGCTCT 60.221 36.000 0.00 0.00 0.00 4.09
99 100 5.343325 CGATTGCTTTTAAGTTTTGGCTCTC 59.657 40.000 0.00 0.00 0.00 3.20
100 101 5.590530 TTGCTTTTAAGTTTTGGCTCTCA 57.409 34.783 0.00 0.00 0.00 3.27
101 102 4.932146 TGCTTTTAAGTTTTGGCTCTCAC 58.068 39.130 0.00 0.00 0.00 3.51
102 103 4.400884 TGCTTTTAAGTTTTGGCTCTCACA 59.599 37.500 0.00 0.00 0.00 3.58
103 104 5.105554 TGCTTTTAAGTTTTGGCTCTCACAA 60.106 36.000 0.00 0.00 0.00 3.33
104 105 5.985530 GCTTTTAAGTTTTGGCTCTCACAAT 59.014 36.000 0.00 0.00 0.00 2.71
105 106 6.479990 GCTTTTAAGTTTTGGCTCTCACAATT 59.520 34.615 0.00 0.00 0.00 2.32
106 107 7.011389 GCTTTTAAGTTTTGGCTCTCACAATTT 59.989 33.333 0.00 0.00 0.00 1.82
107 108 9.528018 CTTTTAAGTTTTGGCTCTCACAATTTA 57.472 29.630 0.00 0.00 0.00 1.40
110 111 9.691362 TTAAGTTTTGGCTCTCACAATTTATTC 57.309 29.630 0.00 0.00 0.00 1.75
111 112 7.288810 AGTTTTGGCTCTCACAATTTATTCA 57.711 32.000 0.00 0.00 0.00 2.57
112 113 7.725251 AGTTTTGGCTCTCACAATTTATTCAA 58.275 30.769 0.00 0.00 0.00 2.69
113 114 8.203485 AGTTTTGGCTCTCACAATTTATTCAAA 58.797 29.630 0.00 0.00 0.00 2.69
114 115 8.825745 GTTTTGGCTCTCACAATTTATTCAAAA 58.174 29.630 0.00 0.00 0.00 2.44
115 116 8.954950 TTTGGCTCTCACAATTTATTCAAAAA 57.045 26.923 0.00 0.00 0.00 1.94
116 117 9.558396 TTTGGCTCTCACAATTTATTCAAAAAT 57.442 25.926 0.00 0.00 0.00 1.82
117 118 9.558396 TTGGCTCTCACAATTTATTCAAAAATT 57.442 25.926 0.00 0.00 39.14 1.82
125 126 7.250839 CAATTTATTCAAAAATTGTTGCCGC 57.749 32.000 3.24 0.00 45.46 6.53
126 127 4.999751 TTATTCAAAAATTGTTGCCGCC 57.000 36.364 3.24 0.00 0.00 6.13
127 128 1.212616 TTCAAAAATTGTTGCCGCCG 58.787 45.000 3.24 0.00 0.00 6.46
128 129 1.203812 CAAAAATTGTTGCCGCCGC 59.796 52.632 0.00 0.00 0.00 6.53
129 130 1.958715 AAAAATTGTTGCCGCCGCC 60.959 52.632 0.00 0.00 0.00 6.13
130 131 3.874807 AAAATTGTTGCCGCCGCCC 62.875 57.895 0.00 0.00 0.00 6.13
152 153 3.498927 CGTTGTCCACGTATAGGTCTT 57.501 47.619 0.00 0.00 44.49 3.01
153 154 3.176708 CGTTGTCCACGTATAGGTCTTG 58.823 50.000 0.00 0.00 44.49 3.02
154 155 3.366679 CGTTGTCCACGTATAGGTCTTGT 60.367 47.826 0.00 0.00 44.49 3.16
155 156 3.861276 TGTCCACGTATAGGTCTTGTG 57.139 47.619 0.00 0.00 0.00 3.33
156 157 3.423749 TGTCCACGTATAGGTCTTGTGA 58.576 45.455 0.00 0.00 32.39 3.58
157 158 3.442625 TGTCCACGTATAGGTCTTGTGAG 59.557 47.826 0.00 0.00 32.39 3.51
158 159 2.426024 TCCACGTATAGGTCTTGTGAGC 59.574 50.000 0.00 0.00 40.70 4.26
159 160 2.481449 CCACGTATAGGTCTTGTGAGCC 60.481 54.545 0.00 0.00 41.26 4.70
160 161 2.165641 CACGTATAGGTCTTGTGAGCCA 59.834 50.000 0.00 0.00 41.26 4.75
161 162 3.031736 ACGTATAGGTCTTGTGAGCCAT 58.968 45.455 0.00 0.00 41.26 4.40
162 163 3.451178 ACGTATAGGTCTTGTGAGCCATT 59.549 43.478 0.00 0.00 41.26 3.16
163 164 3.804325 CGTATAGGTCTTGTGAGCCATTG 59.196 47.826 0.00 0.00 41.26 2.82
164 165 2.113860 TAGGTCTTGTGAGCCATTGC 57.886 50.000 0.00 0.00 41.26 3.56
174 175 4.421365 GCCATTGCTGACTTCCCA 57.579 55.556 0.00 0.00 33.53 4.37
175 176 2.892025 GCCATTGCTGACTTCCCAT 58.108 52.632 0.00 0.00 33.53 4.00
176 177 0.458669 GCCATTGCTGACTTCCCATG 59.541 55.000 0.00 0.00 33.53 3.66
177 178 1.843368 CCATTGCTGACTTCCCATGT 58.157 50.000 0.00 0.00 0.00 3.21
178 179 2.173519 CCATTGCTGACTTCCCATGTT 58.826 47.619 0.00 0.00 0.00 2.71
179 180 3.355378 CCATTGCTGACTTCCCATGTTA 58.645 45.455 0.00 0.00 0.00 2.41
180 181 3.129287 CCATTGCTGACTTCCCATGTTAC 59.871 47.826 0.00 0.00 0.00 2.50
181 182 3.500448 TTGCTGACTTCCCATGTTACA 57.500 42.857 0.00 0.00 0.00 2.41
182 183 2.778299 TGCTGACTTCCCATGTTACAC 58.222 47.619 0.00 0.00 0.00 2.90
183 184 1.732259 GCTGACTTCCCATGTTACACG 59.268 52.381 0.00 0.00 0.00 4.49
184 185 2.870435 GCTGACTTCCCATGTTACACGT 60.870 50.000 0.00 0.00 0.00 4.49
185 186 2.736721 CTGACTTCCCATGTTACACGTG 59.263 50.000 15.48 15.48 34.96 4.49
186 187 2.365941 TGACTTCCCATGTTACACGTGA 59.634 45.455 25.01 2.68 37.29 4.35
187 188 2.993899 GACTTCCCATGTTACACGTGAG 59.006 50.000 25.01 7.31 37.29 3.51
188 189 2.631062 ACTTCCCATGTTACACGTGAGA 59.369 45.455 25.01 6.70 37.29 3.27
189 190 3.254060 CTTCCCATGTTACACGTGAGAG 58.746 50.000 25.01 5.45 37.29 3.20
190 191 2.521126 TCCCATGTTACACGTGAGAGA 58.479 47.619 25.01 8.90 37.29 3.10
191 192 3.096852 TCCCATGTTACACGTGAGAGAT 58.903 45.455 25.01 10.91 37.29 2.75
192 193 4.274978 TCCCATGTTACACGTGAGAGATA 58.725 43.478 25.01 0.00 37.29 1.98
193 194 4.338400 TCCCATGTTACACGTGAGAGATAG 59.662 45.833 25.01 6.99 37.29 2.08
194 195 4.045104 CCATGTTACACGTGAGAGATAGC 58.955 47.826 25.01 6.29 37.29 2.97
195 196 3.400505 TGTTACACGTGAGAGATAGCG 57.599 47.619 25.01 0.00 0.00 4.26
196 197 2.745821 TGTTACACGTGAGAGATAGCGT 59.254 45.455 25.01 0.00 38.14 5.07
197 198 3.189910 TGTTACACGTGAGAGATAGCGTT 59.810 43.478 25.01 0.00 35.25 4.84
202 203 2.488545 ACGTGAGAGATAGCGTTCAAGT 59.511 45.455 0.00 1.85 33.54 3.16
211 212 1.597742 AGCGTTCAAGTGCATGAAGT 58.402 45.000 2.97 0.00 39.84 3.01
220 221 4.828939 TCAAGTGCATGAAGTTCTTTCCAT 59.171 37.500 4.17 0.00 34.77 3.41
222 223 3.760684 AGTGCATGAAGTTCTTTCCATCC 59.239 43.478 4.17 0.00 34.77 3.51
224 225 2.749621 GCATGAAGTTCTTTCCATCCGT 59.250 45.455 4.17 0.00 34.77 4.69
230 231 4.559862 AGTTCTTTCCATCCGTTCAGAT 57.440 40.909 0.00 0.00 0.00 2.90
240 241 5.476599 TCCATCCGTTCAGATTTTTGATTGT 59.523 36.000 0.00 0.00 0.00 2.71
251 252 7.225734 TCAGATTTTTGATTGTGTTGACGAGTA 59.774 33.333 0.00 0.00 0.00 2.59
255 256 5.590104 TTGATTGTGTTGACGAGTACATG 57.410 39.130 0.00 0.00 0.00 3.21
327 328 0.991146 TGCAGAGGCCTATGGTTTGA 59.009 50.000 27.97 0.00 40.13 2.69
343 344 5.188327 GGTTTGAACCTCCTTTTCAAGAG 57.812 43.478 5.66 0.00 45.75 2.85
345 346 5.009110 GGTTTGAACCTCCTTTTCAAGAGAG 59.991 44.000 5.66 0.00 45.75 3.20
364 366 2.844348 GAGAAAACTGGATGGACCCCTA 59.156 50.000 0.00 0.00 38.00 3.53
390 392 5.965918 GTGAAAACAAGACTTGTGAAGCTAC 59.034 40.000 21.24 11.84 44.59 3.58
391 393 5.645929 TGAAAACAAGACTTGTGAAGCTACA 59.354 36.000 21.24 11.55 44.59 2.74
393 395 5.485662 AACAAGACTTGTGAAGCTACAAC 57.514 39.130 21.24 0.00 44.59 3.32
394 396 3.555956 ACAAGACTTGTGAAGCTACAACG 59.444 43.478 19.96 0.00 43.48 4.10
395 397 3.728076 AGACTTGTGAAGCTACAACGA 57.272 42.857 0.00 0.00 35.75 3.85
399 401 1.497991 TGTGAAGCTACAACGAGCAC 58.502 50.000 0.00 0.00 45.43 4.40
400 402 0.790814 GTGAAGCTACAACGAGCACC 59.209 55.000 0.00 0.00 45.43 5.01
401 403 0.666274 TGAAGCTACAACGAGCACCG 60.666 55.000 0.00 0.00 45.43 4.94
402 404 1.956620 GAAGCTACAACGAGCACCGC 61.957 60.000 0.00 0.00 45.43 5.68
403 405 2.432628 GCTACAACGAGCACCGCT 60.433 61.111 0.00 0.00 43.88 5.52
404 406 1.153901 GCTACAACGAGCACCGCTA 60.154 57.895 0.00 0.00 39.88 4.26
405 407 0.527817 GCTACAACGAGCACCGCTAT 60.528 55.000 0.00 0.00 39.88 2.97
406 408 1.922570 CTACAACGAGCACCGCTATT 58.077 50.000 0.00 0.00 39.88 1.73
417 419 1.326548 CACCGCTATTCCGCTAACAAC 59.673 52.381 0.00 0.00 0.00 3.32
448 450 3.753294 ACCTCTATATGAGCGTTTGGG 57.247 47.619 0.00 0.00 41.35 4.12
449 451 3.039011 ACCTCTATATGAGCGTTTGGGT 58.961 45.455 0.00 0.00 41.35 4.51
450 452 3.454812 ACCTCTATATGAGCGTTTGGGTT 59.545 43.478 0.00 0.00 41.35 4.11
461 463 2.226912 GCGTTTGGGTTTGTACATGCTA 59.773 45.455 0.00 0.00 0.00 3.49
476 478 7.791029 TGTACATGCTATGAGGATTTTGTAGA 58.209 34.615 0.00 0.00 0.00 2.59
489 491 6.431234 AGGATTTTGTAGACACCAACAATCTC 59.569 38.462 0.00 0.00 35.64 2.75
497 499 1.195448 CACCAACAATCTCAGCACGAC 59.805 52.381 0.00 0.00 0.00 4.34
517 519 2.095059 ACATCGACAAAATCTGCAAGCC 60.095 45.455 0.00 0.00 0.00 4.35
543 545 1.490490 AGAAGACTTGCTTGGTCACCA 59.510 47.619 0.00 0.00 36.83 4.17
558 560 3.139077 GTCACCAAGTCCAAACCTACTG 58.861 50.000 0.00 0.00 0.00 2.74
560 562 1.493022 ACCAAGTCCAAACCTACTGCA 59.507 47.619 0.00 0.00 0.00 4.41
561 563 1.880027 CCAAGTCCAAACCTACTGCAC 59.120 52.381 0.00 0.00 0.00 4.57
575 584 3.041351 GCACATGCACGGTCGTCA 61.041 61.111 0.00 0.00 41.59 4.35
583 592 0.454620 GCACGGTCGTCACTGACTAG 60.455 60.000 7.58 0.00 38.91 2.57
584 593 0.873054 CACGGTCGTCACTGACTAGT 59.127 55.000 7.58 0.00 38.91 2.57
596 605 4.224991 ACTGACTAGTGACTACTCCCTC 57.775 50.000 0.00 0.00 38.36 4.30
597 606 3.054213 ACTGACTAGTGACTACTCCCTCC 60.054 52.174 0.00 0.00 38.36 4.30
600 609 2.308275 ACTAGTGACTACTCCCTCCGTT 59.692 50.000 0.00 0.00 38.36 4.44
601 610 2.305858 AGTGACTACTCCCTCCGTTT 57.694 50.000 0.00 0.00 28.79 3.60
602 611 2.606378 AGTGACTACTCCCTCCGTTTT 58.394 47.619 0.00 0.00 28.79 2.43
603 612 3.771216 AGTGACTACTCCCTCCGTTTTA 58.229 45.455 0.00 0.00 28.79 1.52
604 613 4.154942 AGTGACTACTCCCTCCGTTTTAA 58.845 43.478 0.00 0.00 28.79 1.52
605 614 4.590222 AGTGACTACTCCCTCCGTTTTAAA 59.410 41.667 0.00 0.00 28.79 1.52
606 615 5.070847 AGTGACTACTCCCTCCGTTTTAAAA 59.929 40.000 0.00 0.00 28.79 1.52
607 616 5.936372 GTGACTACTCCCTCCGTTTTAAAAT 59.064 40.000 3.52 0.00 0.00 1.82
608 617 7.038799 AGTGACTACTCCCTCCGTTTTAAAATA 60.039 37.037 3.52 0.00 28.79 1.40
609 618 7.277319 GTGACTACTCCCTCCGTTTTAAAATAG 59.723 40.741 3.52 1.99 0.00 1.73
610 619 7.178983 TGACTACTCCCTCCGTTTTAAAATAGA 59.821 37.037 3.52 3.61 0.00 1.98
611 620 8.087303 ACTACTCCCTCCGTTTTAAAATAGAT 57.913 34.615 3.52 0.00 0.00 1.98
612 621 9.205513 ACTACTCCCTCCGTTTTAAAATAGATA 57.794 33.333 3.52 0.00 0.00 1.98
614 623 8.728337 ACTCCCTCCGTTTTAAAATAGATAAC 57.272 34.615 3.52 0.00 0.00 1.89
615 624 8.546322 ACTCCCTCCGTTTTAAAATAGATAACT 58.454 33.333 3.52 0.00 0.00 2.24
616 625 8.953368 TCCCTCCGTTTTAAAATAGATAACTC 57.047 34.615 3.52 0.00 0.00 3.01
617 626 8.542080 TCCCTCCGTTTTAAAATAGATAACTCA 58.458 33.333 3.52 0.00 0.00 3.41
618 627 9.169592 CCCTCCGTTTTAAAATAGATAACTCAA 57.830 33.333 3.52 0.00 0.00 3.02
685 694 8.706322 AAACAGAGGGATTATTTGTTTGTAGT 57.294 30.769 0.64 0.00 39.65 2.73
686 695 9.802039 AAACAGAGGGATTATTTGTTTGTAGTA 57.198 29.630 0.64 0.00 39.65 1.82
687 696 9.449719 AACAGAGGGATTATTTGTTTGTAGTAG 57.550 33.333 0.00 0.00 0.00 2.57
688 697 8.047310 ACAGAGGGATTATTTGTTTGTAGTAGG 58.953 37.037 0.00 0.00 0.00 3.18
689 698 8.265055 CAGAGGGATTATTTGTTTGTAGTAGGA 58.735 37.037 0.00 0.00 0.00 2.94
690 699 8.487028 AGAGGGATTATTTGTTTGTAGTAGGAG 58.513 37.037 0.00 0.00 0.00 3.69
704 713 7.636150 TGTAGTAGGAGTACAAATGGAGTAC 57.364 40.000 0.00 0.00 41.59 2.73
918 951 6.385443 AGCTATATATAGGGATTGCAGCCTA 58.615 40.000 19.19 0.00 0.00 3.93
920 953 6.495181 GCTATATATAGGGATTGCAGCCTAGA 59.505 42.308 19.19 0.00 0.00 2.43
945 978 1.123861 AGGGCACTCTGCTTCTCACA 61.124 55.000 0.00 0.00 44.28 3.58
955 988 0.590195 GCTTCTCACACACTGCAAGG 59.410 55.000 0.00 0.00 39.30 3.61
967 1000 3.706373 GCAAGGTCCGCCTCCTCA 61.706 66.667 0.00 0.00 46.33 3.86
968 1001 2.266055 CAAGGTCCGCCTCCTCAC 59.734 66.667 0.00 0.00 46.33 3.51
969 1002 3.382832 AAGGTCCGCCTCCTCACG 61.383 66.667 0.00 0.00 46.33 4.35
974 1007 4.803426 CCGCCTCCTCACGCACTC 62.803 72.222 0.00 0.00 0.00 3.51
997 1032 3.349006 AAACAGACGCAGCAGCCG 61.349 61.111 0.00 0.00 37.52 5.52
1034 1076 2.969238 GATCGCGGTGCAGATGGG 60.969 66.667 6.13 0.00 0.00 4.00
1128 1170 2.288025 GGACGGCAAGGACCAGGTA 61.288 63.158 0.00 0.00 0.00 3.08
1191 1233 4.069232 CTGCGCAGGAAGGTCGGA 62.069 66.667 29.88 0.00 0.00 4.55
1429 5275 3.604065 GCACATCACATGCTGATAGTG 57.396 47.619 20.45 20.45 37.53 2.74
1430 5276 3.200483 GCACATCACATGCTGATAGTGA 58.800 45.455 24.14 11.19 45.26 3.41
1440 5286 3.844640 TGCTGATAGTGATAGGGTAGCA 58.155 45.455 0.00 0.00 37.56 3.49
1461 5307 4.201783 GCACGTTGATTACTTGTATGGACC 60.202 45.833 0.00 0.00 0.00 4.46
1508 5354 1.016653 GCTCGGCACCTCTCAAGTTC 61.017 60.000 0.00 0.00 0.00 3.01
1632 5481 5.050431 GTGTTCTCAAAGAGCAGAGTTTCTC 60.050 44.000 0.00 0.00 36.12 2.87
1682 5531 0.317479 AAGTCCGGTTTCGAGTCCAG 59.683 55.000 0.00 0.00 39.00 3.86
1724 5593 8.519526 GCCCGGAAAATGAATATGATTTATACA 58.480 33.333 0.73 0.00 0.00 2.29
1798 5668 1.302033 CAACCTCAGCGCTGGTCTT 60.302 57.895 35.36 20.51 35.17 3.01
1801 5671 0.179018 ACCTCAGCGCTGGTCTTTTT 60.179 50.000 35.36 11.59 29.18 1.94
1834 5704 0.108774 GGTATAACCCTGGCCTCTGC 59.891 60.000 3.32 0.00 30.04 4.26
1835 5705 0.837272 GTATAACCCTGGCCTCTGCA 59.163 55.000 3.32 0.00 40.13 4.41
1836 5706 1.421646 GTATAACCCTGGCCTCTGCAT 59.578 52.381 3.32 0.00 40.13 3.96
1837 5707 0.475906 ATAACCCTGGCCTCTGCATC 59.524 55.000 3.32 0.00 40.13 3.91
1839 5709 2.192443 CCCTGGCCTCTGCATCAG 59.808 66.667 3.32 0.00 40.13 2.90
1840 5710 2.372890 CCCTGGCCTCTGCATCAGA 61.373 63.158 3.32 0.00 38.25 3.27
1842 5712 0.747283 CCTGGCCTCTGCATCAGAAC 60.747 60.000 3.32 0.00 40.18 3.01
1843 5713 1.078918 TGGCCTCTGCATCAGAACG 60.079 57.895 3.32 0.00 40.18 3.95
1844 5714 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
1845 5715 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
1855 5725 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
1856 5726 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
1858 5728 1.078778 AACGATGCATACGGCCACA 60.079 52.632 18.34 0.00 43.89 4.17
1859 5729 1.366111 AACGATGCATACGGCCACAC 61.366 55.000 18.34 0.00 43.89 3.82
1860 5730 2.534019 CGATGCATACGGCCACACC 61.534 63.158 2.24 0.00 43.89 4.16
1862 5732 1.153168 ATGCATACGGCCACACCTC 60.153 57.895 2.24 0.00 43.89 3.85
1863 5733 1.909459 ATGCATACGGCCACACCTCA 61.909 55.000 2.24 0.00 43.89 3.86
1867 5737 1.537814 ATACGGCCACACCTCAACGA 61.538 55.000 2.24 0.00 35.61 3.85
1868 5738 1.537814 TACGGCCACACCTCAACGAT 61.538 55.000 2.24 0.00 35.61 3.73
1872 5742 1.298859 GCCACACCTCAACGATGGTC 61.299 60.000 0.00 0.00 33.75 4.02
1873 5743 0.321671 CCACACCTCAACGATGGTCT 59.678 55.000 0.00 0.00 33.75 3.85
1877 5747 4.253685 CACACCTCAACGATGGTCTATTT 58.746 43.478 0.00 0.00 33.75 1.40
1887 5757 8.647796 TCAACGATGGTCTATTTAGATGGTTAT 58.352 33.333 0.00 0.00 34.39 1.89
1931 8839 3.004524 CGGTTATCTAGAGACGGGGAAAG 59.995 52.174 0.00 0.00 0.00 2.62
1944 8852 2.608090 CGGGGAAAGAAAGTAATCGAGC 59.392 50.000 0.00 0.00 0.00 5.03
2010 8918 1.032014 TTTCAACTGCCAAGCTCACC 58.968 50.000 0.00 0.00 0.00 4.02
2012 8920 1.529010 CAACTGCCAAGCTCACCCA 60.529 57.895 0.00 0.00 0.00 4.51
2112 9020 3.990092 AGAAGAAGCACACACGTTATGA 58.010 40.909 3.61 0.00 0.00 2.15
2186 9094 0.376152 GCAGGATGAATGTGTCGCTG 59.624 55.000 0.00 0.00 39.69 5.18
2204 9112 2.228343 GCTGTTGCTTCAAGATGCTTCT 59.772 45.455 9.02 0.00 36.03 2.85
2258 9166 3.564225 TCGTGCTCGTAGTATGATCACAT 59.436 43.478 20.66 0.00 31.64 3.21
2263 9171 5.010012 TGCTCGTAGTATGATCACATCACAT 59.990 40.000 0.00 0.00 43.01 3.21
2276 9184 7.574217 TGATCACATCACATCACATTTCTTGTG 60.574 37.037 0.00 0.00 44.68 3.33
2289 9197 7.027778 ACATTTCTTGTGTTGTACTTCCTTC 57.972 36.000 0.00 0.00 37.11 3.46
2291 9199 4.395959 TCTTGTGTTGTACTTCCTTCGT 57.604 40.909 0.00 0.00 0.00 3.85
2293 9201 4.098960 TCTTGTGTTGTACTTCCTTCGTCT 59.901 41.667 0.00 0.00 0.00 4.18
2307 9215 5.849510 TCCTTCGTCTCAAAATAACTGTCA 58.150 37.500 0.00 0.00 0.00 3.58
2308 9216 6.464222 TCCTTCGTCTCAAAATAACTGTCAT 58.536 36.000 0.00 0.00 0.00 3.06
2311 9219 8.717821 CCTTCGTCTCAAAATAACTGTCATAAA 58.282 33.333 0.00 0.00 0.00 1.40
2327 9235 8.411683 ACTGTCATAAATTTAGTACTACCTCCG 58.588 37.037 0.91 0.00 0.00 4.63
2328 9236 8.297470 TGTCATAAATTTAGTACTACCTCCGT 57.703 34.615 0.91 0.00 0.00 4.69
2329 9237 8.408601 TGTCATAAATTTAGTACTACCTCCGTC 58.591 37.037 0.91 0.00 0.00 4.79
2330 9238 8.628280 GTCATAAATTTAGTACTACCTCCGTCT 58.372 37.037 0.91 0.00 0.00 4.18
2331 9239 9.851686 TCATAAATTTAGTACTACCTCCGTCTA 57.148 33.333 0.91 0.00 0.00 2.59
2333 9241 7.579761 AAATTTAGTACTACCTCCGTCTAGG 57.420 40.000 0.91 0.00 42.82 3.02
2343 9251 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
2344 9252 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
2345 9253 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
2346 9254 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
2347 9255 6.407074 CCTCCGTCTAGGTGAATAAGTCATTT 60.407 42.308 0.00 0.00 38.90 2.32
2348 9256 6.338146 TCCGTCTAGGTGAATAAGTCATTTG 58.662 40.000 0.00 0.00 38.90 2.32
2349 9257 5.006746 CCGTCTAGGTGAATAAGTCATTTGC 59.993 44.000 0.00 0.00 38.90 3.68
2350 9258 5.276395 CGTCTAGGTGAATAAGTCATTTGCG 60.276 44.000 0.00 0.00 38.90 4.85
2351 9259 5.581085 GTCTAGGTGAATAAGTCATTTGCGT 59.419 40.000 0.00 0.00 38.90 5.24
2352 9260 6.755141 GTCTAGGTGAATAAGTCATTTGCGTA 59.245 38.462 0.00 0.00 38.90 4.42
2353 9261 6.978659 TCTAGGTGAATAAGTCATTTGCGTAG 59.021 38.462 0.00 0.00 38.90 3.51
2354 9262 5.488341 AGGTGAATAAGTCATTTGCGTAGT 58.512 37.500 0.00 0.00 38.90 2.73
2355 9263 5.938125 AGGTGAATAAGTCATTTGCGTAGTT 59.062 36.000 0.00 0.00 38.90 2.24
2356 9264 6.092259 AGGTGAATAAGTCATTTGCGTAGTTC 59.908 38.462 0.00 0.00 38.90 3.01
2357 9265 6.092259 GGTGAATAAGTCATTTGCGTAGTTCT 59.908 38.462 0.00 0.00 38.90 3.01
2358 9266 7.277098 GGTGAATAAGTCATTTGCGTAGTTCTA 59.723 37.037 0.00 0.00 38.90 2.10
2359 9267 8.321716 GTGAATAAGTCATTTGCGTAGTTCTAG 58.678 37.037 0.00 0.00 38.90 2.43
2360 9268 8.248253 TGAATAAGTCATTTGCGTAGTTCTAGA 58.752 33.333 0.00 0.00 0.00 2.43
2361 9269 9.250624 GAATAAGTCATTTGCGTAGTTCTAGAT 57.749 33.333 0.00 0.00 0.00 1.98
2362 9270 8.804688 ATAAGTCATTTGCGTAGTTCTAGATC 57.195 34.615 0.00 0.00 0.00 2.75
2363 9271 5.274718 AGTCATTTGCGTAGTTCTAGATCG 58.725 41.667 0.00 0.00 0.00 3.69
2364 9272 5.035443 GTCATTTGCGTAGTTCTAGATCGT 58.965 41.667 0.00 0.00 0.00 3.73
2365 9273 5.171695 GTCATTTGCGTAGTTCTAGATCGTC 59.828 44.000 0.00 0.00 0.00 4.20
2366 9274 3.314763 TTGCGTAGTTCTAGATCGTCG 57.685 47.619 0.00 4.98 0.00 5.12
2367 9275 2.543641 TGCGTAGTTCTAGATCGTCGA 58.456 47.619 17.89 0.00 0.00 4.20
2368 9276 3.129109 TGCGTAGTTCTAGATCGTCGAT 58.871 45.455 7.63 7.63 0.00 3.59
2369 9277 3.558829 TGCGTAGTTCTAGATCGTCGATT 59.441 43.478 9.52 2.49 0.00 3.34
2370 9278 4.034858 TGCGTAGTTCTAGATCGTCGATTT 59.965 41.667 9.52 6.33 0.00 2.17
2371 9279 4.376279 GCGTAGTTCTAGATCGTCGATTTG 59.624 45.833 9.52 3.27 0.00 2.32
2372 9280 5.735324 CGTAGTTCTAGATCGTCGATTTGA 58.265 41.667 9.52 5.55 0.00 2.69
2373 9281 5.841811 CGTAGTTCTAGATCGTCGATTTGAG 59.158 44.000 9.52 7.32 0.00 3.02
2374 9282 5.176407 AGTTCTAGATCGTCGATTTGAGG 57.824 43.478 9.52 0.00 0.00 3.86
2375 9283 4.882427 AGTTCTAGATCGTCGATTTGAGGA 59.118 41.667 9.52 0.00 44.88 3.71
2376 9284 5.357314 AGTTCTAGATCGTCGATTTGAGGAA 59.643 40.000 9.52 7.62 44.06 3.36
2377 9285 6.039941 AGTTCTAGATCGTCGATTTGAGGAAT 59.960 38.462 9.52 0.00 44.06 3.01
2378 9286 6.392625 TCTAGATCGTCGATTTGAGGAATT 57.607 37.500 9.52 0.00 44.06 2.17
2379 9287 7.506328 TCTAGATCGTCGATTTGAGGAATTA 57.494 36.000 9.52 0.00 44.06 1.40
2380 9288 7.937649 TCTAGATCGTCGATTTGAGGAATTAA 58.062 34.615 9.52 0.00 44.06 1.40
2381 9289 8.410912 TCTAGATCGTCGATTTGAGGAATTAAA 58.589 33.333 9.52 0.00 44.06 1.52
2382 9290 9.197694 CTAGATCGTCGATTTGAGGAATTAAAT 57.802 33.333 9.52 0.00 44.06 1.40
2384 9292 9.712305 AGATCGTCGATTTGAGGAATTAAATAT 57.288 29.630 9.52 0.00 44.06 1.28
2385 9293 9.746711 GATCGTCGATTTGAGGAATTAAATATG 57.253 33.333 9.52 0.00 44.06 1.78
2386 9294 8.657074 TCGTCGATTTGAGGAATTAAATATGT 57.343 30.769 0.00 0.00 38.48 2.29
2387 9295 8.547894 TCGTCGATTTGAGGAATTAAATATGTG 58.452 33.333 0.00 0.00 38.48 3.21
2388 9296 8.335356 CGTCGATTTGAGGAATTAAATATGTGT 58.665 33.333 0.00 0.00 34.34 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.361889 GTTTTATTTTAGGTTTTGGGTGAGCTA 58.638 33.333 0.00 0.00 0.00 3.32
2 3 7.170828 CAGTTTTATTTTAGGTTTTGGGTGAGC 59.829 37.037 0.00 0.00 0.00 4.26
3 4 8.201464 ACAGTTTTATTTTAGGTTTTGGGTGAG 58.799 33.333 0.00 0.00 0.00 3.51
4 5 7.982354 CACAGTTTTATTTTAGGTTTTGGGTGA 59.018 33.333 0.00 0.00 0.00 4.02
5 6 7.766738 ACACAGTTTTATTTTAGGTTTTGGGTG 59.233 33.333 0.00 0.00 0.00 4.61
6 7 7.853299 ACACAGTTTTATTTTAGGTTTTGGGT 58.147 30.769 0.00 0.00 0.00 4.51
7 8 8.201464 AGACACAGTTTTATTTTAGGTTTTGGG 58.799 33.333 0.00 0.00 0.00 4.12
12 13 9.841295 TGTCTAGACACAGTTTTATTTTAGGTT 57.159 29.630 21.74 0.00 36.21 3.50
13 14 9.841295 TTGTCTAGACACAGTTTTATTTTAGGT 57.159 29.630 25.13 0.00 41.67 3.08
21 22 9.834628 CTTTTGTTTTGTCTAGACACAGTTTTA 57.165 29.630 25.13 6.06 41.67 1.52
22 23 7.812669 CCTTTTGTTTTGTCTAGACACAGTTTT 59.187 33.333 25.13 0.00 41.67 2.43
23 24 7.175990 TCCTTTTGTTTTGTCTAGACACAGTTT 59.824 33.333 25.13 0.00 41.67 2.66
24 25 6.657541 TCCTTTTGTTTTGTCTAGACACAGTT 59.342 34.615 25.13 0.00 41.67 3.16
25 26 6.177610 TCCTTTTGTTTTGTCTAGACACAGT 58.822 36.000 25.13 0.00 41.67 3.55
26 27 6.677781 TCCTTTTGTTTTGTCTAGACACAG 57.322 37.500 25.13 11.51 41.67 3.66
27 28 7.455641 TTTCCTTTTGTTTTGTCTAGACACA 57.544 32.000 25.13 16.46 41.67 3.72
28 29 9.447040 GTATTTCCTTTTGTTTTGTCTAGACAC 57.553 33.333 25.13 14.33 41.67 3.67
29 30 8.626526 GGTATTTCCTTTTGTTTTGTCTAGACA 58.373 33.333 21.74 21.74 39.98 3.41
30 31 8.847196 AGGTATTTCCTTTTGTTTTGTCTAGAC 58.153 33.333 16.32 16.32 45.67 2.59
31 32 8.990163 AGGTATTTCCTTTTGTTTTGTCTAGA 57.010 30.769 0.00 0.00 45.67 2.43
34 35 9.197306 AGTTAGGTATTTCCTTTTGTTTTGTCT 57.803 29.630 0.00 0.00 45.67 3.41
35 36 9.244799 CAGTTAGGTATTTCCTTTTGTTTTGTC 57.755 33.333 0.00 0.00 45.67 3.18
36 37 8.755028 ACAGTTAGGTATTTCCTTTTGTTTTGT 58.245 29.630 0.00 0.00 45.67 2.83
40 41 9.636789 AGTTACAGTTAGGTATTTCCTTTTGTT 57.363 29.630 0.00 0.00 45.67 2.83
41 42 9.636789 AAGTTACAGTTAGGTATTTCCTTTTGT 57.363 29.630 0.00 0.00 45.67 2.83
56 57 9.865321 AGCAATCGTATAAAGAAGTTACAGTTA 57.135 29.630 0.00 0.00 0.00 2.24
57 58 8.773404 AGCAATCGTATAAAGAAGTTACAGTT 57.227 30.769 0.00 0.00 0.00 3.16
58 59 8.773404 AAGCAATCGTATAAAGAAGTTACAGT 57.227 30.769 0.00 0.00 0.00 3.55
69 70 8.917655 GCCAAAACTTAAAAGCAATCGTATAAA 58.082 29.630 0.00 0.00 0.00 1.40
70 71 8.301002 AGCCAAAACTTAAAAGCAATCGTATAA 58.699 29.630 0.00 0.00 0.00 0.98
71 72 7.822658 AGCCAAAACTTAAAAGCAATCGTATA 58.177 30.769 0.00 0.00 0.00 1.47
72 73 6.687604 AGCCAAAACTTAAAAGCAATCGTAT 58.312 32.000 0.00 0.00 0.00 3.06
73 74 6.016610 AGAGCCAAAACTTAAAAGCAATCGTA 60.017 34.615 0.00 0.00 0.00 3.43
74 75 4.944048 AGCCAAAACTTAAAAGCAATCGT 58.056 34.783 0.00 0.00 0.00 3.73
75 76 5.222631 AGAGCCAAAACTTAAAAGCAATCG 58.777 37.500 0.00 0.00 0.00 3.34
76 77 6.144563 GTGAGAGCCAAAACTTAAAAGCAATC 59.855 38.462 0.00 0.00 0.00 2.67
77 78 5.985530 GTGAGAGCCAAAACTTAAAAGCAAT 59.014 36.000 0.00 0.00 0.00 3.56
78 79 5.105554 TGTGAGAGCCAAAACTTAAAAGCAA 60.106 36.000 0.00 0.00 0.00 3.91
79 80 4.400884 TGTGAGAGCCAAAACTTAAAAGCA 59.599 37.500 0.00 0.00 0.00 3.91
80 81 4.932146 TGTGAGAGCCAAAACTTAAAAGC 58.068 39.130 0.00 0.00 0.00 3.51
81 82 8.424274 AAATTGTGAGAGCCAAAACTTAAAAG 57.576 30.769 0.00 0.00 0.00 2.27
84 85 9.691362 GAATAAATTGTGAGAGCCAAAACTTAA 57.309 29.630 0.00 0.00 0.00 1.85
85 86 8.855110 TGAATAAATTGTGAGAGCCAAAACTTA 58.145 29.630 0.00 0.00 0.00 2.24
86 87 7.725251 TGAATAAATTGTGAGAGCCAAAACTT 58.275 30.769 0.00 0.00 0.00 2.66
87 88 7.288810 TGAATAAATTGTGAGAGCCAAAACT 57.711 32.000 0.00 0.00 0.00 2.66
88 89 7.945033 TTGAATAAATTGTGAGAGCCAAAAC 57.055 32.000 0.00 0.00 0.00 2.43
89 90 8.954950 TTTTGAATAAATTGTGAGAGCCAAAA 57.045 26.923 0.00 0.00 0.00 2.44
90 91 8.954950 TTTTTGAATAAATTGTGAGAGCCAAA 57.045 26.923 0.00 0.00 0.00 3.28
91 92 9.558396 AATTTTTGAATAAATTGTGAGAGCCAA 57.442 25.926 0.00 0.00 36.60 4.52
92 93 8.991026 CAATTTTTGAATAAATTGTGAGAGCCA 58.009 29.630 11.66 0.00 44.59 4.75
102 103 6.377780 GGCGGCAACAATTTTTGAATAAATT 58.622 32.000 8.51 0.00 38.02 1.82
103 104 5.390356 CGGCGGCAACAATTTTTGAATAAAT 60.390 36.000 10.53 0.00 0.00 1.40
104 105 4.084328 CGGCGGCAACAATTTTTGAATAAA 60.084 37.500 10.53 0.00 0.00 1.40
105 106 3.430218 CGGCGGCAACAATTTTTGAATAA 59.570 39.130 10.53 0.00 0.00 1.40
106 107 2.989840 CGGCGGCAACAATTTTTGAATA 59.010 40.909 10.53 0.00 0.00 1.75
107 108 1.797635 CGGCGGCAACAATTTTTGAAT 59.202 42.857 10.53 0.00 0.00 2.57
108 109 1.212616 CGGCGGCAACAATTTTTGAA 58.787 45.000 10.53 0.00 0.00 2.69
109 110 1.218230 GCGGCGGCAACAATTTTTGA 61.218 50.000 9.78 0.00 39.62 2.69
110 111 1.203812 GCGGCGGCAACAATTTTTG 59.796 52.632 9.78 0.00 39.62 2.44
111 112 1.958715 GGCGGCGGCAACAATTTTT 60.959 52.632 29.41 0.00 42.47 1.94
112 113 2.356913 GGCGGCGGCAACAATTTT 60.357 55.556 29.41 0.00 42.47 1.82
113 114 4.371590 GGGCGGCGGCAACAATTT 62.372 61.111 34.25 0.00 42.47 1.82
133 134 3.924686 CACAAGACCTATACGTGGACAAC 59.075 47.826 0.00 0.00 0.00 3.32
134 135 3.827876 TCACAAGACCTATACGTGGACAA 59.172 43.478 0.00 0.00 0.00 3.18
135 136 3.423749 TCACAAGACCTATACGTGGACA 58.576 45.455 0.00 0.00 0.00 4.02
136 137 3.734293 GCTCACAAGACCTATACGTGGAC 60.734 52.174 0.00 0.00 0.00 4.02
137 138 2.426024 GCTCACAAGACCTATACGTGGA 59.574 50.000 0.00 0.00 0.00 4.02
138 139 2.481449 GGCTCACAAGACCTATACGTGG 60.481 54.545 0.00 0.00 0.00 4.94
139 140 2.165641 TGGCTCACAAGACCTATACGTG 59.834 50.000 0.00 0.00 0.00 4.49
140 141 2.453521 TGGCTCACAAGACCTATACGT 58.546 47.619 0.00 0.00 0.00 3.57
141 142 3.735237 ATGGCTCACAAGACCTATACG 57.265 47.619 0.00 0.00 0.00 3.06
142 143 3.561725 GCAATGGCTCACAAGACCTATAC 59.438 47.826 0.00 0.00 36.96 1.47
143 144 3.808728 GCAATGGCTCACAAGACCTATA 58.191 45.455 0.00 0.00 36.96 1.31
144 145 2.648059 GCAATGGCTCACAAGACCTAT 58.352 47.619 0.00 0.00 36.96 2.57
145 146 2.113860 GCAATGGCTCACAAGACCTA 57.886 50.000 0.00 0.00 36.96 3.08
146 147 2.952714 GCAATGGCTCACAAGACCT 58.047 52.632 0.00 0.00 36.96 3.85
157 158 0.458669 CATGGGAAGTCAGCAATGGC 59.541 55.000 0.00 0.00 41.61 4.40
158 159 1.843368 ACATGGGAAGTCAGCAATGG 58.157 50.000 0.00 0.00 0.00 3.16
159 160 3.758023 TGTAACATGGGAAGTCAGCAATG 59.242 43.478 0.00 0.00 0.00 2.82
160 161 3.758554 GTGTAACATGGGAAGTCAGCAAT 59.241 43.478 0.00 0.00 36.32 3.56
161 162 3.146066 GTGTAACATGGGAAGTCAGCAA 58.854 45.455 0.00 0.00 36.32 3.91
162 163 2.778299 GTGTAACATGGGAAGTCAGCA 58.222 47.619 0.00 0.00 36.32 4.41
163 164 1.732259 CGTGTAACATGGGAAGTCAGC 59.268 52.381 0.00 0.00 35.74 4.26
164 165 2.736721 CACGTGTAACATGGGAAGTCAG 59.263 50.000 7.58 0.00 35.74 3.51
165 166 2.365941 TCACGTGTAACATGGGAAGTCA 59.634 45.455 16.51 0.00 35.74 3.41
166 167 2.993899 CTCACGTGTAACATGGGAAGTC 59.006 50.000 16.51 0.00 32.01 3.01
167 168 2.631062 TCTCACGTGTAACATGGGAAGT 59.369 45.455 16.51 0.00 32.01 3.01
168 169 3.056821 TCTCTCACGTGTAACATGGGAAG 60.057 47.826 16.51 1.12 32.01 3.46
169 170 2.894765 TCTCTCACGTGTAACATGGGAA 59.105 45.455 16.51 0.00 32.01 3.97
170 171 2.521126 TCTCTCACGTGTAACATGGGA 58.479 47.619 16.51 3.03 35.74 4.37
171 172 3.526931 ATCTCTCACGTGTAACATGGG 57.473 47.619 16.51 0.66 35.74 4.00
172 173 4.045104 GCTATCTCTCACGTGTAACATGG 58.955 47.826 16.51 7.28 35.74 3.66
173 174 3.726235 CGCTATCTCTCACGTGTAACATG 59.274 47.826 16.51 0.00 35.74 3.21
174 175 3.377485 ACGCTATCTCTCACGTGTAACAT 59.623 43.478 16.51 6.74 37.37 2.71
175 176 2.745821 ACGCTATCTCTCACGTGTAACA 59.254 45.455 16.51 0.00 37.37 2.41
176 177 3.402058 ACGCTATCTCTCACGTGTAAC 57.598 47.619 16.51 0.00 37.37 2.50
177 178 3.437741 TGAACGCTATCTCTCACGTGTAA 59.562 43.478 16.51 3.92 39.00 2.41
178 179 3.004862 TGAACGCTATCTCTCACGTGTA 58.995 45.455 16.51 4.28 39.00 2.90
179 180 1.810755 TGAACGCTATCTCTCACGTGT 59.189 47.619 16.51 0.00 39.00 4.49
180 181 2.544480 TGAACGCTATCTCTCACGTG 57.456 50.000 9.94 9.94 39.00 4.49
181 182 2.488545 ACTTGAACGCTATCTCTCACGT 59.511 45.455 0.00 0.00 41.16 4.49
182 183 2.848887 CACTTGAACGCTATCTCTCACG 59.151 50.000 0.00 0.00 0.00 4.35
183 184 2.600867 GCACTTGAACGCTATCTCTCAC 59.399 50.000 0.00 0.00 0.00 3.51
184 185 2.231235 TGCACTTGAACGCTATCTCTCA 59.769 45.455 0.00 0.00 0.00 3.27
185 186 2.881074 TGCACTTGAACGCTATCTCTC 58.119 47.619 0.00 0.00 0.00 3.20
186 187 3.118992 TCATGCACTTGAACGCTATCTCT 60.119 43.478 0.00 0.00 0.00 3.10
187 188 3.190079 TCATGCACTTGAACGCTATCTC 58.810 45.455 0.00 0.00 0.00 2.75
188 189 3.251479 TCATGCACTTGAACGCTATCT 57.749 42.857 0.00 0.00 0.00 1.98
189 190 3.372206 ACTTCATGCACTTGAACGCTATC 59.628 43.478 0.00 0.00 32.39 2.08
190 191 3.338249 ACTTCATGCACTTGAACGCTAT 58.662 40.909 0.00 0.00 32.39 2.97
191 192 2.766313 ACTTCATGCACTTGAACGCTA 58.234 42.857 0.00 0.00 32.39 4.26
192 193 1.597742 ACTTCATGCACTTGAACGCT 58.402 45.000 0.00 0.00 32.39 5.07
193 194 2.031682 AGAACTTCATGCACTTGAACGC 60.032 45.455 0.00 0.00 32.39 4.84
194 195 3.885484 AGAACTTCATGCACTTGAACG 57.115 42.857 0.00 0.00 32.39 3.95
195 196 4.978580 GGAAAGAACTTCATGCACTTGAAC 59.021 41.667 0.00 0.00 35.55 3.18
196 197 4.644234 TGGAAAGAACTTCATGCACTTGAA 59.356 37.500 2.89 2.89 35.55 2.69
197 198 4.206375 TGGAAAGAACTTCATGCACTTGA 58.794 39.130 0.00 0.00 35.55 3.02
202 203 2.749076 CGGATGGAAAGAACTTCATGCA 59.251 45.455 0.00 0.00 35.55 3.96
211 212 6.264292 TCAAAAATCTGAACGGATGGAAAGAA 59.736 34.615 0.00 0.00 0.00 2.52
220 221 5.766150 ACACAATCAAAAATCTGAACGGA 57.234 34.783 0.00 0.00 0.00 4.69
222 223 6.344157 CGTCAACACAATCAAAAATCTGAACG 60.344 38.462 0.00 0.00 0.00 3.95
224 225 6.790282 TCGTCAACACAATCAAAAATCTGAA 58.210 32.000 0.00 0.00 0.00 3.02
230 231 6.424176 TGTACTCGTCAACACAATCAAAAA 57.576 33.333 0.00 0.00 0.00 1.94
240 241 3.660501 AGCTTCATGTACTCGTCAACA 57.339 42.857 0.00 0.00 0.00 3.33
251 252 4.916983 TGCAAAGTGTTAAGCTTCATGT 57.083 36.364 0.00 0.00 0.00 3.21
255 256 5.523369 AGTTGATGCAAAGTGTTAAGCTTC 58.477 37.500 0.00 0.00 0.00 3.86
300 301 5.342017 ACCATAGGCCTCTGCATTATAGTA 58.658 41.667 9.68 0.00 40.13 1.82
306 307 2.025037 TCAAACCATAGGCCTCTGCATT 60.025 45.455 9.68 4.14 40.13 3.56
327 328 6.319911 CAGTTTTCTCTCTTGAAAAGGAGGTT 59.680 38.462 3.11 0.00 46.24 3.50
338 339 4.006319 GGTCCATCCAGTTTTCTCTCTTG 58.994 47.826 0.00 0.00 35.97 3.02
342 343 1.636003 GGGGTCCATCCAGTTTTCTCT 59.364 52.381 0.00 0.00 38.11 3.10
343 344 1.636003 AGGGGTCCATCCAGTTTTCTC 59.364 52.381 0.00 0.00 38.11 2.87
345 346 3.010250 ACTTAGGGGTCCATCCAGTTTTC 59.990 47.826 0.00 0.00 38.11 2.29
364 366 5.183904 AGCTTCACAAGTCTTGTTTTCACTT 59.816 36.000 15.73 0.00 43.23 3.16
390 392 1.752501 CGGAATAGCGGTGCTCGTTG 61.753 60.000 0.00 0.00 40.44 4.10
391 393 1.518572 CGGAATAGCGGTGCTCGTT 60.519 57.895 0.00 0.00 40.44 3.85
393 395 2.402282 TAGCGGAATAGCGGTGCTCG 62.402 60.000 0.00 0.00 40.44 5.03
394 396 0.249322 TTAGCGGAATAGCGGTGCTC 60.249 55.000 0.00 0.00 40.44 4.26
395 397 0.529992 GTTAGCGGAATAGCGGTGCT 60.530 55.000 0.00 0.00 43.41 4.40
399 401 1.647346 TGTTGTTAGCGGAATAGCGG 58.353 50.000 0.00 0.00 43.00 5.52
400 402 2.863740 TCATGTTGTTAGCGGAATAGCG 59.136 45.455 0.00 0.00 43.00 4.26
401 403 3.871594 ACTCATGTTGTTAGCGGAATAGC 59.128 43.478 0.00 0.00 37.41 2.97
402 404 5.462398 GGTACTCATGTTGTTAGCGGAATAG 59.538 44.000 0.00 0.00 0.00 1.73
403 405 5.128171 AGGTACTCATGTTGTTAGCGGAATA 59.872 40.000 0.00 0.00 0.00 1.75
404 406 4.081087 AGGTACTCATGTTGTTAGCGGAAT 60.081 41.667 0.00 0.00 0.00 3.01
405 407 3.259876 AGGTACTCATGTTGTTAGCGGAA 59.740 43.478 0.00 0.00 0.00 4.30
406 408 2.829720 AGGTACTCATGTTGTTAGCGGA 59.170 45.455 0.00 0.00 0.00 5.54
417 419 6.037720 CGCTCATATAGAGGTAGGTACTCATG 59.962 46.154 0.00 0.00 44.86 3.07
448 450 7.538575 ACAAAATCCTCATAGCATGTACAAAC 58.461 34.615 0.00 0.00 0.00 2.93
449 451 7.701539 ACAAAATCCTCATAGCATGTACAAA 57.298 32.000 0.00 0.00 0.00 2.83
450 452 8.264347 TCTACAAAATCCTCATAGCATGTACAA 58.736 33.333 0.00 0.00 0.00 2.41
461 463 5.630121 TGTTGGTGTCTACAAAATCCTCAT 58.370 37.500 0.00 0.00 0.00 2.90
476 478 1.202639 TCGTGCTGAGATTGTTGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
489 491 2.413112 AGATTTTGTCGATGTCGTGCTG 59.587 45.455 2.04 0.00 40.80 4.41
497 499 2.523015 GGCTTGCAGATTTTGTCGATG 58.477 47.619 0.00 0.00 0.00 3.84
517 519 2.072298 CCAAGCAAGTCTTCTCCTTCG 58.928 52.381 0.00 0.00 31.27 3.79
523 525 1.490490 TGGTGACCAAGCAAGTCTTCT 59.510 47.619 0.00 0.00 35.21 2.85
543 545 3.149196 CATGTGCAGTAGGTTTGGACTT 58.851 45.455 0.00 0.00 37.71 3.01
558 560 3.041351 TGACGACCGTGCATGTGC 61.041 61.111 4.96 0.00 42.50 4.57
560 562 1.664649 CAGTGACGACCGTGCATGT 60.665 57.895 4.96 0.00 0.00 3.21
561 563 1.372872 TCAGTGACGACCGTGCATG 60.373 57.895 0.00 0.00 0.00 4.06
575 584 3.054213 GGAGGGAGTAGTCACTAGTCAGT 60.054 52.174 19.45 7.25 36.15 3.41
583 592 4.525912 TTAAAACGGAGGGAGTAGTCAC 57.474 45.455 0.00 0.00 0.00 3.67
584 593 5.549742 TTTTAAAACGGAGGGAGTAGTCA 57.450 39.130 0.00 0.00 0.00 3.41
585 594 7.550712 TCTATTTTAAAACGGAGGGAGTAGTC 58.449 38.462 1.97 0.00 0.00 2.59
586 595 7.486407 TCTATTTTAAAACGGAGGGAGTAGT 57.514 36.000 1.97 0.00 0.00 2.73
589 598 8.546322 AGTTATCTATTTTAAAACGGAGGGAGT 58.454 33.333 1.97 0.00 0.00 3.85
590 599 8.959705 AGTTATCTATTTTAAAACGGAGGGAG 57.040 34.615 1.97 0.00 0.00 4.30
592 601 8.726870 TGAGTTATCTATTTTAAAACGGAGGG 57.273 34.615 1.97 0.00 0.00 4.30
659 668 9.143155 ACTACAAACAAATAATCCCTCTGTTTT 57.857 29.630 0.00 0.00 37.95 2.43
660 669 8.706322 ACTACAAACAAATAATCCCTCTGTTT 57.294 30.769 0.00 0.00 40.01 2.83
661 670 9.449719 CTACTACAAACAAATAATCCCTCTGTT 57.550 33.333 0.00 0.00 0.00 3.16
662 671 8.047310 CCTACTACAAACAAATAATCCCTCTGT 58.953 37.037 0.00 0.00 0.00 3.41
663 672 8.265055 TCCTACTACAAACAAATAATCCCTCTG 58.735 37.037 0.00 0.00 0.00 3.35
664 673 8.388656 TCCTACTACAAACAAATAATCCCTCT 57.611 34.615 0.00 0.00 0.00 3.69
665 674 8.265764 ACTCCTACTACAAACAAATAATCCCTC 58.734 37.037 0.00 0.00 0.00 4.30
666 675 8.159229 ACTCCTACTACAAACAAATAATCCCT 57.841 34.615 0.00 0.00 0.00 4.20
667 676 9.322773 GTACTCCTACTACAAACAAATAATCCC 57.677 37.037 0.00 0.00 0.00 3.85
668 677 9.880157 TGTACTCCTACTACAAACAAATAATCC 57.120 33.333 0.00 0.00 0.00 3.01
673 682 9.010029 CCATTTGTACTCCTACTACAAACAAAT 57.990 33.333 6.01 5.05 43.48 2.32
674 683 8.212312 TCCATTTGTACTCCTACTACAAACAAA 58.788 33.333 6.01 0.00 43.48 2.83
675 684 7.737869 TCCATTTGTACTCCTACTACAAACAA 58.262 34.615 6.01 0.00 43.48 2.83
676 685 7.015877 ACTCCATTTGTACTCCTACTACAAACA 59.984 37.037 6.01 0.00 43.48 2.83
677 686 7.384477 ACTCCATTTGTACTCCTACTACAAAC 58.616 38.462 6.01 0.00 43.48 2.93
678 687 7.549147 ACTCCATTTGTACTCCTACTACAAA 57.451 36.000 6.28 6.28 44.32 2.83
679 688 7.892241 AGTACTCCATTTGTACTCCTACTACAA 59.108 37.037 0.00 0.00 44.93 2.41
680 689 7.408543 AGTACTCCATTTGTACTCCTACTACA 58.591 38.462 0.00 0.00 44.93 2.74
681 690 7.878547 AGTACTCCATTTGTACTCCTACTAC 57.121 40.000 0.00 0.00 44.93 2.73
682 691 8.776119 AGTAGTACTCCATTTGTACTCCTACTA 58.224 37.037 0.00 0.00 44.93 1.82
683 692 7.641249 AGTAGTACTCCATTTGTACTCCTACT 58.359 38.462 0.00 6.12 44.93 2.57
684 693 7.774625 AGAGTAGTACTCCATTTGTACTCCTAC 59.225 40.741 23.82 4.24 46.18 3.18
685 694 7.870027 AGAGTAGTACTCCATTTGTACTCCTA 58.130 38.462 23.82 0.00 46.18 2.94
686 695 6.733509 AGAGTAGTACTCCATTTGTACTCCT 58.266 40.000 23.82 4.65 46.18 3.69
687 696 7.774625 ACTAGAGTAGTACTCCATTTGTACTCC 59.225 40.741 23.82 0.06 46.18 3.85
688 697 8.735692 ACTAGAGTAGTACTCCATTTGTACTC 57.264 38.462 23.82 4.28 46.18 2.59
689 698 8.958506 CAACTAGAGTAGTACTCCATTTGTACT 58.041 37.037 23.82 10.69 46.18 2.73
690 699 8.189460 CCAACTAGAGTAGTACTCCATTTGTAC 58.811 40.741 23.82 0.00 46.18 2.90
696 705 5.589452 CGTTCCAACTAGAGTAGTACTCCAT 59.411 44.000 23.82 11.24 46.18 3.41
704 713 4.156915 CGTTGTCGTTCCAACTAGAGTAG 58.843 47.826 0.00 0.00 42.00 2.57
705 714 3.610114 GCGTTGTCGTTCCAACTAGAGTA 60.610 47.826 0.00 0.00 42.00 2.59
706 715 2.861360 GCGTTGTCGTTCCAACTAGAGT 60.861 50.000 0.00 0.00 42.00 3.24
709 718 0.433492 CGCGTTGTCGTTCCAACTAG 59.567 55.000 0.00 0.00 42.00 2.57
710 719 0.248990 ACGCGTTGTCGTTCCAACTA 60.249 50.000 5.58 0.00 42.00 2.24
711 720 1.519898 ACGCGTTGTCGTTCCAACT 60.520 52.632 5.58 0.00 42.00 3.16
712 721 3.008327 ACGCGTTGTCGTTCCAAC 58.992 55.556 5.58 0.00 40.07 3.77
820 844 0.388649 ACACTGATGAAGACGCGGTC 60.389 55.000 12.47 5.76 0.00 4.79
905 938 1.162800 CGCTTCTAGGCTGCAATCCC 61.163 60.000 0.50 0.00 0.00 3.85
918 951 1.294780 CAGAGTGCCCTTCGCTTCT 59.705 57.895 0.00 0.00 38.78 2.85
920 953 2.359230 GCAGAGTGCCCTTCGCTT 60.359 61.111 0.00 0.00 37.42 4.68
967 1000 0.107897 TCTGTTTGTGTGGAGTGCGT 60.108 50.000 0.00 0.00 0.00 5.24
968 1001 0.304705 GTCTGTTTGTGTGGAGTGCG 59.695 55.000 0.00 0.00 0.00 5.34
969 1002 0.304705 CGTCTGTTTGTGTGGAGTGC 59.695 55.000 0.00 0.00 0.00 4.40
971 1004 0.107897 TGCGTCTGTTTGTGTGGAGT 60.108 50.000 0.00 0.00 0.00 3.85
973 1006 1.436195 GCTGCGTCTGTTTGTGTGGA 61.436 55.000 0.00 0.00 0.00 4.02
974 1007 1.009675 GCTGCGTCTGTTTGTGTGG 60.010 57.895 0.00 0.00 0.00 4.17
997 1032 0.807667 ACGATCTTCTGCGTCATGCC 60.808 55.000 0.00 0.00 45.60 4.40
1128 1170 4.082523 CCATGGCCGACGACCACT 62.083 66.667 4.55 0.00 40.82 4.00
1306 1381 2.611518 CTGCCCGTAGAAGAAGTTGAG 58.388 52.381 0.00 0.00 0.00 3.02
1428 5274 4.647853 AGTAATCAACGTGCTACCCTATCA 59.352 41.667 0.00 0.00 0.00 2.15
1429 5275 5.197682 AGTAATCAACGTGCTACCCTATC 57.802 43.478 0.00 0.00 0.00 2.08
1430 5276 5.105064 ACAAGTAATCAACGTGCTACCCTAT 60.105 40.000 0.00 0.00 40.80 2.57
1431 5277 4.221262 ACAAGTAATCAACGTGCTACCCTA 59.779 41.667 0.00 0.00 40.80 3.53
1432 5278 3.007614 ACAAGTAATCAACGTGCTACCCT 59.992 43.478 0.00 0.00 40.80 4.34
1433 5279 3.332034 ACAAGTAATCAACGTGCTACCC 58.668 45.455 0.00 0.00 40.80 3.69
1440 5286 5.416271 AGGTCCATACAAGTAATCAACGT 57.584 39.130 0.00 0.00 0.00 3.99
1461 5307 0.788391 GTCAAGTACGACCGGCAAAG 59.212 55.000 0.00 0.00 0.00 2.77
1508 5354 2.430694 TCAAGTCCGATACCACCATGAG 59.569 50.000 0.00 0.00 0.00 2.90
1682 5531 1.797537 GGCGCGTGACAGATTTTGC 60.798 57.895 8.43 0.00 0.00 3.68
1724 5593 0.937304 GATATGTCACGCGCCATGTT 59.063 50.000 5.73 0.00 0.00 2.71
1740 5609 5.505819 CGATTACGGAGTTGAGCAGAAGATA 60.506 44.000 0.00 0.00 37.78 1.98
1815 5685 0.108774 GCAGAGGCCAGGGTTATACC 59.891 60.000 5.01 0.00 37.60 2.73
1816 5686 0.837272 TGCAGAGGCCAGGGTTATAC 59.163 55.000 5.01 0.00 40.13 1.47
1817 5687 1.699634 GATGCAGAGGCCAGGGTTATA 59.300 52.381 5.01 0.00 40.13 0.98
1818 5688 0.475906 GATGCAGAGGCCAGGGTTAT 59.524 55.000 5.01 0.00 40.13 1.89
1819 5689 0.913934 TGATGCAGAGGCCAGGGTTA 60.914 55.000 5.01 0.00 40.13 2.85
1820 5690 2.207501 CTGATGCAGAGGCCAGGGTT 62.208 60.000 5.01 0.00 40.13 4.11
1821 5691 2.611800 TGATGCAGAGGCCAGGGT 60.612 61.111 5.01 0.00 40.13 4.34
1823 5693 0.747283 GTTCTGATGCAGAGGCCAGG 60.747 60.000 5.01 0.00 41.75 4.45
1825 5695 1.078918 CGTTCTGATGCAGAGGCCA 60.079 57.895 5.01 0.00 41.75 5.36
1826 5696 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
1835 5705 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
1836 5706 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
1837 5707 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
1839 5709 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
1840 5710 1.078778 TGTGGCCGTATGCATCGTT 60.079 52.632 0.19 0.00 43.89 3.85
1842 5712 2.534019 GGTGTGGCCGTATGCATCG 61.534 63.158 0.19 7.03 43.89 3.84
1843 5713 1.153168 AGGTGTGGCCGTATGCATC 60.153 57.895 0.19 0.00 43.89 3.91
1844 5714 1.153168 GAGGTGTGGCCGTATGCAT 60.153 57.895 3.79 3.79 43.89 3.96
1845 5715 2.118233 TTGAGGTGTGGCCGTATGCA 62.118 55.000 0.00 0.00 43.89 3.96
1846 5716 1.376683 TTGAGGTGTGGCCGTATGC 60.377 57.895 0.00 0.00 43.70 3.14
1847 5717 1.358725 CGTTGAGGTGTGGCCGTATG 61.359 60.000 0.00 0.00 43.70 2.39
1848 5718 1.079405 CGTTGAGGTGTGGCCGTAT 60.079 57.895 0.00 0.00 43.70 3.06
1849 5719 1.537814 ATCGTTGAGGTGTGGCCGTA 61.538 55.000 0.00 0.00 43.70 4.02
1850 5720 2.879233 ATCGTTGAGGTGTGGCCGT 61.879 57.895 0.00 0.00 43.70 5.68
1851 5721 2.047274 ATCGTTGAGGTGTGGCCG 60.047 61.111 0.00 0.00 43.70 6.13
1852 5722 2.040544 CCATCGTTGAGGTGTGGCC 61.041 63.158 0.00 0.00 37.58 5.36
1853 5723 1.298859 GACCATCGTTGAGGTGTGGC 61.299 60.000 0.00 0.00 38.50 5.01
1855 5725 3.526931 ATAGACCATCGTTGAGGTGTG 57.473 47.619 0.00 0.00 38.50 3.82
1856 5726 4.553330 AAATAGACCATCGTTGAGGTGT 57.447 40.909 0.00 0.00 38.50 4.16
1858 5728 6.463049 CCATCTAAATAGACCATCGTTGAGGT 60.463 42.308 0.00 0.00 41.83 3.85
1859 5729 5.928839 CCATCTAAATAGACCATCGTTGAGG 59.071 44.000 0.00 0.00 34.72 3.86
1860 5730 6.516718 ACCATCTAAATAGACCATCGTTGAG 58.483 40.000 0.00 0.00 34.72 3.02
1862 5732 8.833231 ATAACCATCTAAATAGACCATCGTTG 57.167 34.615 0.00 0.00 34.72 4.10
1931 8839 5.808030 ACTTCTAGCAAGCTCGATTACTTTC 59.192 40.000 0.00 0.00 0.00 2.62
1944 8852 4.456911 TGCCAATCTCAAACTTCTAGCAAG 59.543 41.667 0.00 0.00 0.00 4.01
1996 8904 0.698238 TAATGGGTGAGCTTGGCAGT 59.302 50.000 0.00 0.00 0.00 4.40
2079 8987 6.481644 TGTGTGCTTCTTCTTTGTTTGTTTTT 59.518 30.769 0.00 0.00 0.00 1.94
2080 8988 5.988561 TGTGTGCTTCTTCTTTGTTTGTTTT 59.011 32.000 0.00 0.00 0.00 2.43
2081 8989 5.405269 GTGTGTGCTTCTTCTTTGTTTGTTT 59.595 36.000 0.00 0.00 0.00 2.83
2082 8990 4.923281 GTGTGTGCTTCTTCTTTGTTTGTT 59.077 37.500 0.00 0.00 0.00 2.83
2083 8991 4.485163 GTGTGTGCTTCTTCTTTGTTTGT 58.515 39.130 0.00 0.00 0.00 2.83
2084 8992 3.543494 CGTGTGTGCTTCTTCTTTGTTTG 59.457 43.478 0.00 0.00 0.00 2.93
2088 8996 3.405170 AACGTGTGTGCTTCTTCTTTG 57.595 42.857 0.00 0.00 0.00 2.77
2100 9008 6.525578 TCCTTCTATCTTCATAACGTGTGT 57.474 37.500 0.00 0.00 0.00 3.72
2112 9020 4.785376 ACCTGTGAACCATCCTTCTATCTT 59.215 41.667 0.00 0.00 0.00 2.40
2186 9094 4.670221 CGGTTAGAAGCATCTTGAAGCAAC 60.670 45.833 0.00 0.00 37.10 4.17
2204 9112 3.804036 CATATTCTTGCAGGTCCGGTTA 58.196 45.455 0.00 0.00 0.00 2.85
2276 9184 5.978934 TTTTGAGACGAAGGAAGTACAAC 57.021 39.130 0.00 0.00 0.00 3.32
2284 9192 5.849510 TGACAGTTATTTTGAGACGAAGGA 58.150 37.500 0.00 0.00 0.00 3.36
2307 9215 9.294614 CCTAGACGGAGGTAGTACTAAATTTAT 57.705 37.037 3.61 0.00 33.16 1.40
2308 9216 8.682936 CCTAGACGGAGGTAGTACTAAATTTA 57.317 38.462 3.61 0.00 33.16 1.40
2322 9230 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
2323 9231 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
2324 9232 6.338146 CAAATGACTTATTCACCTAGACGGA 58.662 40.000 0.00 0.00 36.92 4.69
2325 9233 5.006746 GCAAATGACTTATTCACCTAGACGG 59.993 44.000 0.00 0.00 36.92 4.79
2326 9234 5.276395 CGCAAATGACTTATTCACCTAGACG 60.276 44.000 0.00 0.00 36.92 4.18
2327 9235 5.581085 ACGCAAATGACTTATTCACCTAGAC 59.419 40.000 0.00 0.00 36.92 2.59
2328 9236 5.730550 ACGCAAATGACTTATTCACCTAGA 58.269 37.500 0.00 0.00 36.92 2.43
2329 9237 6.757010 ACTACGCAAATGACTTATTCACCTAG 59.243 38.462 0.00 0.00 36.92 3.02
2330 9238 6.636705 ACTACGCAAATGACTTATTCACCTA 58.363 36.000 0.00 0.00 36.92 3.08
2331 9239 5.488341 ACTACGCAAATGACTTATTCACCT 58.512 37.500 0.00 0.00 36.92 4.00
2332 9240 5.796350 ACTACGCAAATGACTTATTCACC 57.204 39.130 0.00 0.00 36.92 4.02
2333 9241 7.061752 AGAACTACGCAAATGACTTATTCAC 57.938 36.000 0.00 0.00 36.92 3.18
2334 9242 8.248253 TCTAGAACTACGCAAATGACTTATTCA 58.752 33.333 0.00 0.00 39.11 2.57
2335 9243 8.630278 TCTAGAACTACGCAAATGACTTATTC 57.370 34.615 0.00 0.00 0.00 1.75
2336 9244 9.250624 GATCTAGAACTACGCAAATGACTTATT 57.749 33.333 0.00 0.00 0.00 1.40
2337 9245 7.591795 CGATCTAGAACTACGCAAATGACTTAT 59.408 37.037 0.00 0.00 0.00 1.73
2338 9246 6.910972 CGATCTAGAACTACGCAAATGACTTA 59.089 38.462 0.00 0.00 0.00 2.24
2339 9247 5.744345 CGATCTAGAACTACGCAAATGACTT 59.256 40.000 0.00 0.00 0.00 3.01
2340 9248 5.163642 ACGATCTAGAACTACGCAAATGACT 60.164 40.000 0.00 0.00 0.00 3.41
2341 9249 5.035443 ACGATCTAGAACTACGCAAATGAC 58.965 41.667 0.00 0.00 0.00 3.06
2342 9250 5.244785 ACGATCTAGAACTACGCAAATGA 57.755 39.130 0.00 0.00 0.00 2.57
2343 9251 4.144902 CGACGATCTAGAACTACGCAAATG 59.855 45.833 0.00 0.00 0.00 2.32
2344 9252 4.034858 TCGACGATCTAGAACTACGCAAAT 59.965 41.667 0.00 0.00 0.00 2.32
2345 9253 3.371898 TCGACGATCTAGAACTACGCAAA 59.628 43.478 0.00 0.00 0.00 3.68
2346 9254 2.931969 TCGACGATCTAGAACTACGCAA 59.068 45.455 0.00 0.00 0.00 4.85
2347 9255 2.543641 TCGACGATCTAGAACTACGCA 58.456 47.619 0.00 0.00 0.00 5.24
2348 9256 3.791993 ATCGACGATCTAGAACTACGC 57.208 47.619 4.05 0.00 0.00 4.42
2349 9257 5.735324 TCAAATCGACGATCTAGAACTACG 58.265 41.667 11.42 3.12 0.00 3.51
2350 9258 6.018098 TCCTCAAATCGACGATCTAGAACTAC 60.018 42.308 11.42 0.00 0.00 2.73
2351 9259 6.053650 TCCTCAAATCGACGATCTAGAACTA 58.946 40.000 11.42 0.00 0.00 2.24
2352 9260 4.882427 TCCTCAAATCGACGATCTAGAACT 59.118 41.667 11.42 0.00 0.00 3.01
2353 9261 5.171147 TCCTCAAATCGACGATCTAGAAC 57.829 43.478 11.42 0.00 0.00 3.01
2354 9262 5.830000 TTCCTCAAATCGACGATCTAGAA 57.170 39.130 11.42 7.57 0.00 2.10
2355 9263 6.392625 AATTCCTCAAATCGACGATCTAGA 57.607 37.500 11.42 8.49 0.00 2.43
2356 9264 8.575565 TTTAATTCCTCAAATCGACGATCTAG 57.424 34.615 11.42 8.66 0.00 2.43
2358 9266 9.712305 ATATTTAATTCCTCAAATCGACGATCT 57.288 29.630 11.42 0.00 0.00 2.75
2359 9267 9.746711 CATATTTAATTCCTCAAATCGACGATC 57.253 33.333 11.42 0.00 0.00 3.69
2360 9268 9.273016 ACATATTTAATTCCTCAAATCGACGAT 57.727 29.630 4.05 4.05 0.00 3.73
2361 9269 8.547894 CACATATTTAATTCCTCAAATCGACGA 58.452 33.333 0.00 0.00 0.00 4.20
2362 9270 8.335356 ACACATATTTAATTCCTCAAATCGACG 58.665 33.333 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.