Multiple sequence alignment - TraesCS1B01G073800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G073800 | chr1B | 100.000 | 4500 | 0 | 0 | 1 | 4500 | 57614167 | 57618666 | 0.000000e+00 | 8311.0 |
1 | TraesCS1B01G073800 | chr1B | 97.222 | 108 | 3 | 0 | 3969 | 4076 | 626498463 | 626498570 | 2.760000e-42 | 183.0 |
2 | TraesCS1B01G073800 | chr1B | 95.536 | 112 | 5 | 0 | 3964 | 4075 | 229263157 | 229263268 | 3.580000e-41 | 180.0 |
3 | TraesCS1B01G073800 | chr1B | 96.296 | 108 | 3 | 1 | 3969 | 4076 | 159922531 | 159922637 | 4.630000e-40 | 176.0 |
4 | TraesCS1B01G073800 | chr1B | 95.556 | 90 | 3 | 1 | 3969 | 4058 | 583085872 | 583085784 | 4.690000e-30 | 143.0 |
5 | TraesCS1B01G073800 | chr1D | 93.825 | 2154 | 91 | 19 | 810 | 2941 | 37879802 | 37881935 | 0.000000e+00 | 3203.0 |
6 | TraesCS1B01G073800 | chr1D | 95.810 | 1050 | 31 | 6 | 2903 | 3949 | 37882866 | 37883905 | 0.000000e+00 | 1683.0 |
7 | TraesCS1B01G073800 | chr1D | 97.190 | 427 | 12 | 0 | 4074 | 4500 | 37884085 | 37884511 | 0.000000e+00 | 723.0 |
8 | TraesCS1B01G073800 | chr1D | 96.288 | 431 | 12 | 3 | 5 | 431 | 37878625 | 37879055 | 0.000000e+00 | 704.0 |
9 | TraesCS1B01G073800 | chr1D | 90.421 | 261 | 19 | 4 | 532 | 788 | 37879558 | 37879816 | 5.580000e-89 | 339.0 |
10 | TraesCS1B01G073800 | chr1D | 96.842 | 95 | 3 | 0 | 437 | 531 | 37879202 | 37879296 | 4.660000e-35 | 159.0 |
11 | TraesCS1B01G073800 | chr6B | 82.249 | 1859 | 238 | 52 | 2025 | 3849 | 75422509 | 75420709 | 0.000000e+00 | 1520.0 |
12 | TraesCS1B01G073800 | chr6B | 84.153 | 1546 | 188 | 39 | 2322 | 3849 | 75045487 | 75043981 | 0.000000e+00 | 1445.0 |
13 | TraesCS1B01G073800 | chr6B | 81.753 | 1118 | 143 | 32 | 855 | 1951 | 75423615 | 75422538 | 0.000000e+00 | 878.0 |
14 | TraesCS1B01G073800 | chr6B | 82.711 | 937 | 136 | 16 | 1026 | 1944 | 75526303 | 75525375 | 0.000000e+00 | 809.0 |
15 | TraesCS1B01G073800 | chr6B | 84.388 | 711 | 77 | 23 | 3147 | 3851 | 75524577 | 75523895 | 0.000000e+00 | 667.0 |
16 | TraesCS1B01G073800 | chr6B | 78.593 | 995 | 155 | 34 | 1026 | 1970 | 75268450 | 75267464 | 4.980000e-169 | 604.0 |
17 | TraesCS1B01G073800 | chr6B | 92.188 | 64 | 2 | 3 | 855 | 915 | 75510481 | 75510418 | 2.230000e-13 | 87.9 |
18 | TraesCS1B01G073800 | chr6B | 97.917 | 48 | 1 | 0 | 3924 | 3971 | 65120339 | 65120292 | 2.880000e-12 | 84.2 |
19 | TraesCS1B01G073800 | chr1A | 90.109 | 1193 | 74 | 18 | 2178 | 3357 | 36790141 | 36791302 | 0.000000e+00 | 1509.0 |
20 | TraesCS1B01G073800 | chr1A | 92.620 | 664 | 28 | 7 | 1336 | 1984 | 36789149 | 36789806 | 0.000000e+00 | 935.0 |
21 | TraesCS1B01G073800 | chr1A | 95.082 | 427 | 21 | 0 | 4074 | 4500 | 36791824 | 36792250 | 0.000000e+00 | 673.0 |
22 | TraesCS1B01G073800 | chr1A | 92.778 | 360 | 18 | 5 | 437 | 788 | 36783927 | 36784286 | 8.630000e-142 | 514.0 |
23 | TraesCS1B01G073800 | chr1A | 93.656 | 331 | 17 | 3 | 1026 | 1352 | 36785376 | 36785706 | 4.040000e-135 | 492.0 |
24 | TraesCS1B01G073800 | chr1A | 91.239 | 331 | 25 | 2 | 1888 | 2215 | 36789812 | 36790141 | 8.880000e-122 | 448.0 |
25 | TraesCS1B01G073800 | chr1A | 92.544 | 228 | 12 | 5 | 3745 | 3971 | 36791603 | 36791826 | 5.620000e-84 | 322.0 |
26 | TraesCS1B01G073800 | chr1A | 92.697 | 178 | 13 | 0 | 5 | 182 | 36783400 | 36783577 | 1.610000e-64 | 257.0 |
27 | TraesCS1B01G073800 | chr1A | 92.814 | 167 | 11 | 1 | 269 | 435 | 36783576 | 36783741 | 1.620000e-59 | 241.0 |
28 | TraesCS1B01G073800 | chr1A | 94.643 | 112 | 5 | 1 | 3968 | 4079 | 6762195 | 6762085 | 5.980000e-39 | 172.0 |
29 | TraesCS1B01G073800 | chr1A | 89.516 | 124 | 8 | 2 | 828 | 946 | 36784313 | 36784436 | 7.800000e-33 | 152.0 |
30 | TraesCS1B01G073800 | chr6D | 85.415 | 1097 | 131 | 22 | 2759 | 3849 | 35716311 | 35715238 | 0.000000e+00 | 1112.0 |
31 | TraesCS1B01G073800 | chr6D | 79.684 | 1329 | 176 | 43 | 2030 | 3328 | 35641103 | 35639839 | 0.000000e+00 | 872.0 |
32 | TraesCS1B01G073800 | chr6D | 85.059 | 763 | 80 | 23 | 3103 | 3851 | 36083438 | 36082696 | 0.000000e+00 | 747.0 |
33 | TraesCS1B01G073800 | chr6D | 80.450 | 977 | 153 | 23 | 1026 | 1969 | 35667506 | 35666535 | 0.000000e+00 | 712.0 |
34 | TraesCS1B01G073800 | chr6D | 81.571 | 662 | 104 | 13 | 3062 | 3715 | 36073555 | 36072904 | 8.570000e-147 | 531.0 |
35 | TraesCS1B01G073800 | chr6D | 83.333 | 564 | 86 | 5 | 1388 | 1944 | 36084580 | 36084018 | 8.630000e-142 | 514.0 |
36 | TraesCS1B01G073800 | chr6D | 80.142 | 564 | 77 | 19 | 2022 | 2569 | 36083979 | 36083435 | 5.460000e-104 | 388.0 |
37 | TraesCS1B01G073800 | chr6D | 82.069 | 435 | 58 | 15 | 971 | 1392 | 36090502 | 36090075 | 1.990000e-93 | 353.0 |
38 | TraesCS1B01G073800 | chr6D | 83.289 | 377 | 45 | 15 | 933 | 1306 | 35886323 | 35885962 | 9.330000e-87 | 331.0 |
39 | TraesCS1B01G073800 | chr6D | 84.459 | 296 | 41 | 5 | 2492 | 2782 | 35716618 | 35716323 | 2.050000e-73 | 287.0 |
40 | TraesCS1B01G073800 | chr6D | 80.299 | 401 | 60 | 12 | 2030 | 2417 | 35666519 | 35666125 | 7.370000e-73 | 285.0 |
41 | TraesCS1B01G073800 | chr6D | 79.241 | 448 | 63 | 17 | 2016 | 2452 | 35717050 | 35716622 | 7.370000e-73 | 285.0 |
42 | TraesCS1B01G073800 | chr6D | 83.388 | 307 | 45 | 1 | 1623 | 1923 | 36105451 | 36105145 | 3.430000e-71 | 279.0 |
43 | TraesCS1B01G073800 | chr6D | 83.471 | 121 | 17 | 3 | 3441 | 3560 | 28325614 | 28325496 | 4.760000e-20 | 110.0 |
44 | TraesCS1B01G073800 | chr6A | 82.086 | 1323 | 184 | 28 | 2030 | 3328 | 39590049 | 39588756 | 0.000000e+00 | 1081.0 |
45 | TraesCS1B01G073800 | chr6A | 81.434 | 1325 | 193 | 28 | 2030 | 3328 | 39547936 | 39546639 | 0.000000e+00 | 1035.0 |
46 | TraesCS1B01G073800 | chr6A | 81.344 | 1324 | 194 | 26 | 2030 | 3328 | 39637843 | 39636548 | 0.000000e+00 | 1027.0 |
47 | TraesCS1B01G073800 | chr6A | 82.090 | 938 | 146 | 13 | 1026 | 1944 | 39670757 | 39669823 | 0.000000e+00 | 782.0 |
48 | TraesCS1B01G073800 | chr6A | 82.131 | 929 | 140 | 17 | 1037 | 1944 | 39628954 | 39628031 | 0.000000e+00 | 773.0 |
49 | TraesCS1B01G073800 | chr6A | 81.376 | 945 | 148 | 19 | 1025 | 1944 | 39581184 | 39580243 | 0.000000e+00 | 745.0 |
50 | TraesCS1B01G073800 | chr6A | 84.831 | 712 | 80 | 21 | 3147 | 3851 | 39669213 | 39668523 | 0.000000e+00 | 691.0 |
51 | TraesCS1B01G073800 | chr6A | 84.129 | 712 | 85 | 22 | 3147 | 3851 | 39627421 | 39626731 | 0.000000e+00 | 664.0 |
52 | TraesCS1B01G073800 | chr6A | 79.880 | 999 | 126 | 41 | 981 | 1923 | 39878026 | 39877047 | 0.000000e+00 | 662.0 |
53 | TraesCS1B01G073800 | chr6A | 87.216 | 485 | 56 | 6 | 3369 | 3849 | 39546641 | 39546159 | 8.510000e-152 | 547.0 |
54 | TraesCS1B01G073800 | chr6A | 79.433 | 564 | 83 | 18 | 2022 | 2569 | 39669784 | 39669238 | 7.110000e-98 | 368.0 |
55 | TraesCS1B01G073800 | chr6A | 78.938 | 565 | 84 | 20 | 2022 | 2569 | 39627992 | 39627446 | 7.160000e-93 | 351.0 |
56 | TraesCS1B01G073800 | chr6A | 78.230 | 565 | 89 | 22 | 2022 | 2569 | 39580204 | 39579657 | 9.330000e-87 | 331.0 |
57 | TraesCS1B01G073800 | chr6A | 79.817 | 327 | 51 | 14 | 4179 | 4499 | 39587922 | 39587605 | 1.630000e-54 | 224.0 |
58 | TraesCS1B01G073800 | chr6A | 79.817 | 327 | 50 | 15 | 4179 | 4499 | 39635714 | 39635398 | 1.630000e-54 | 224.0 |
59 | TraesCS1B01G073800 | chr6A | 79.511 | 327 | 51 | 14 | 4179 | 4499 | 39545804 | 39545488 | 7.580000e-53 | 219.0 |
60 | TraesCS1B01G073800 | chr6A | 93.966 | 116 | 7 | 0 | 3963 | 4078 | 17663913 | 17663798 | 4.630000e-40 | 176.0 |
61 | TraesCS1B01G073800 | chr6A | 89.231 | 130 | 12 | 2 | 3966 | 4095 | 404989759 | 404989632 | 1.300000e-35 | 161.0 |
62 | TraesCS1B01G073800 | chr6A | 92.424 | 66 | 4 | 1 | 3907 | 3971 | 496236807 | 496236742 | 4.790000e-15 | 93.5 |
63 | TraesCS1B01G073800 | chr2A | 97.248 | 109 | 3 | 0 | 3967 | 4075 | 660176862 | 660176754 | 7.690000e-43 | 185.0 |
64 | TraesCS1B01G073800 | chr2A | 97.087 | 103 | 3 | 0 | 4074 | 4176 | 86445956 | 86445854 | 1.660000e-39 | 174.0 |
65 | TraesCS1B01G073800 | chr2A | 97.980 | 99 | 2 | 0 | 4074 | 4172 | 107386603 | 107386505 | 5.980000e-39 | 172.0 |
66 | TraesCS1B01G073800 | chr2A | 90.625 | 128 | 10 | 2 | 3948 | 4075 | 660176735 | 660176860 | 7.740000e-38 | 169.0 |
67 | TraesCS1B01G073800 | chr2A | 93.651 | 63 | 3 | 1 | 3910 | 3971 | 754429831 | 754429893 | 4.790000e-15 | 93.5 |
68 | TraesCS1B01G073800 | chr5B | 94.783 | 115 | 6 | 0 | 3969 | 4083 | 511610743 | 511610857 | 3.580000e-41 | 180.0 |
69 | TraesCS1B01G073800 | chr7B | 98.990 | 99 | 1 | 0 | 4074 | 4172 | 372327726 | 372327628 | 1.290000e-40 | 178.0 |
70 | TraesCS1B01G073800 | chr7B | 95.082 | 61 | 3 | 0 | 3911 | 3971 | 104977698 | 104977638 | 3.710000e-16 | 97.1 |
71 | TraesCS1B01G073800 | chr7B | 94.915 | 59 | 3 | 0 | 3913 | 3971 | 102234611 | 102234553 | 4.790000e-15 | 93.5 |
72 | TraesCS1B01G073800 | chr7A | 98.000 | 100 | 2 | 0 | 4074 | 4173 | 130229639 | 130229540 | 1.660000e-39 | 174.0 |
73 | TraesCS1B01G073800 | chr7A | 92.500 | 120 | 7 | 2 | 3957 | 4076 | 347252600 | 347252483 | 2.150000e-38 | 171.0 |
74 | TraesCS1B01G073800 | chr7D | 97.980 | 99 | 2 | 0 | 4074 | 4172 | 377606745 | 377606647 | 5.980000e-39 | 172.0 |
75 | TraesCS1B01G073800 | chr7D | 91.935 | 62 | 2 | 3 | 3913 | 3971 | 28445322 | 28445261 | 2.880000e-12 | 84.2 |
76 | TraesCS1B01G073800 | chr3A | 93.860 | 114 | 7 | 0 | 3969 | 4082 | 671629484 | 671629371 | 5.980000e-39 | 172.0 |
77 | TraesCS1B01G073800 | chr5A | 93.162 | 117 | 7 | 1 | 3967 | 4082 | 645629928 | 645629812 | 2.150000e-38 | 171.0 |
78 | TraesCS1B01G073800 | chr2D | 96.117 | 103 | 4 | 0 | 4074 | 4176 | 86086061 | 86085959 | 7.740000e-38 | 169.0 |
79 | TraesCS1B01G073800 | chr2D | 92.784 | 97 | 6 | 1 | 254 | 350 | 635586121 | 635586216 | 6.070000e-29 | 139.0 |
80 | TraesCS1B01G073800 | chr3B | 86.486 | 148 | 12 | 6 | 3987 | 4128 | 70295894 | 70296039 | 6.030000e-34 | 156.0 |
81 | TraesCS1B01G073800 | chrUn | 92.929 | 99 | 5 | 2 | 252 | 350 | 93415567 | 93415663 | 4.690000e-30 | 143.0 |
82 | TraesCS1B01G073800 | chrUn | 92.784 | 97 | 5 | 2 | 254 | 350 | 93413201 | 93413295 | 6.070000e-29 | 139.0 |
83 | TraesCS1B01G073800 | chrUn | 92.784 | 97 | 5 | 2 | 254 | 350 | 425406400 | 425406494 | 6.070000e-29 | 139.0 |
84 | TraesCS1B01G073800 | chr2B | 92.929 | 99 | 5 | 2 | 252 | 350 | 369624480 | 369624384 | 4.690000e-30 | 143.0 |
85 | TraesCS1B01G073800 | chr5D | 92.784 | 97 | 5 | 2 | 254 | 350 | 503214650 | 503214556 | 6.070000e-29 | 139.0 |
86 | TraesCS1B01G073800 | chr3D | 92.784 | 97 | 5 | 2 | 254 | 350 | 24168243 | 24168149 | 6.070000e-29 | 139.0 |
87 | TraesCS1B01G073800 | chr3D | 95.122 | 41 | 2 | 0 | 3913 | 3953 | 23172771 | 23172731 | 1.040000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G073800 | chr1B | 57614167 | 57618666 | 4499 | False | 8311.000000 | 8311 | 100.000000 | 1 | 4500 | 1 | chr1B.!!$F1 | 4499 |
1 | TraesCS1B01G073800 | chr1D | 37878625 | 37884511 | 5886 | False | 1135.166667 | 3203 | 95.062667 | 5 | 4500 | 6 | chr1D.!!$F1 | 4495 |
2 | TraesCS1B01G073800 | chr6B | 75043981 | 75045487 | 1506 | True | 1445.000000 | 1445 | 84.153000 | 2322 | 3849 | 1 | chr6B.!!$R2 | 1527 |
3 | TraesCS1B01G073800 | chr6B | 75420709 | 75423615 | 2906 | True | 1199.000000 | 1520 | 82.001000 | 855 | 3849 | 2 | chr6B.!!$R5 | 2994 |
4 | TraesCS1B01G073800 | chr6B | 75523895 | 75526303 | 2408 | True | 738.000000 | 809 | 83.549500 | 1026 | 3851 | 2 | chr6B.!!$R6 | 2825 |
5 | TraesCS1B01G073800 | chr6B | 75267464 | 75268450 | 986 | True | 604.000000 | 604 | 78.593000 | 1026 | 1970 | 1 | chr6B.!!$R3 | 944 |
6 | TraesCS1B01G073800 | chr1A | 36783400 | 36792250 | 8850 | False | 554.300000 | 1509 | 92.305500 | 5 | 4500 | 10 | chr1A.!!$F1 | 4495 |
7 | TraesCS1B01G073800 | chr6D | 35639839 | 35641103 | 1264 | True | 872.000000 | 872 | 79.684000 | 2030 | 3328 | 1 | chr6D.!!$R2 | 1298 |
8 | TraesCS1B01G073800 | chr6D | 35715238 | 35717050 | 1812 | True | 561.333333 | 1112 | 83.038333 | 2016 | 3849 | 3 | chr6D.!!$R8 | 1833 |
9 | TraesCS1B01G073800 | chr6D | 36082696 | 36084580 | 1884 | True | 549.666667 | 747 | 82.844667 | 1388 | 3851 | 3 | chr6D.!!$R9 | 2463 |
10 | TraesCS1B01G073800 | chr6D | 36072904 | 36073555 | 651 | True | 531.000000 | 531 | 81.571000 | 3062 | 3715 | 1 | chr6D.!!$R4 | 653 |
11 | TraesCS1B01G073800 | chr6D | 35666125 | 35667506 | 1381 | True | 498.500000 | 712 | 80.374500 | 1026 | 2417 | 2 | chr6D.!!$R7 | 1391 |
12 | TraesCS1B01G073800 | chr6A | 39877047 | 39878026 | 979 | True | 662.000000 | 662 | 79.880000 | 981 | 1923 | 1 | chr6A.!!$R2 | 942 |
13 | TraesCS1B01G073800 | chr6A | 39587605 | 39590049 | 2444 | True | 652.500000 | 1081 | 80.951500 | 2030 | 4499 | 2 | chr6A.!!$R7 | 2469 |
14 | TraesCS1B01G073800 | chr6A | 39635398 | 39637843 | 2445 | True | 625.500000 | 1027 | 80.580500 | 2030 | 4499 | 2 | chr6A.!!$R9 | 2469 |
15 | TraesCS1B01G073800 | chr6A | 39668523 | 39670757 | 2234 | True | 613.666667 | 782 | 82.118000 | 1026 | 3851 | 3 | chr6A.!!$R10 | 2825 |
16 | TraesCS1B01G073800 | chr6A | 39545488 | 39547936 | 2448 | True | 600.333333 | 1035 | 82.720333 | 2030 | 4499 | 3 | chr6A.!!$R5 | 2469 |
17 | TraesCS1B01G073800 | chr6A | 39626731 | 39628954 | 2223 | True | 596.000000 | 773 | 81.732667 | 1037 | 3851 | 3 | chr6A.!!$R8 | 2814 |
18 | TraesCS1B01G073800 | chr6A | 39579657 | 39581184 | 1527 | True | 538.000000 | 745 | 79.803000 | 1025 | 2569 | 2 | chr6A.!!$R6 | 1544 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
768 | 1228 | 0.953471 | TGGTTCTGTGCACATACGGC | 60.953 | 55.000 | 22.0 | 10.12 | 0.00 | 5.68 | F |
1248 | 2648 | 1.078426 | CGAGGGCTTCCGTTTCCAT | 60.078 | 57.895 | 0.0 | 0.00 | 35.17 | 3.41 | F |
1634 | 6549 | 1.434188 | TCCAGACTTCCCAGCAAGAA | 58.566 | 50.000 | 0.0 | 0.00 | 0.00 | 2.52 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1851 | 6772 | 2.948979 | CCATAACTGGGCGCTGAATTTA | 59.051 | 45.455 | 14.63 | 3.54 | 39.04 | 1.40 | R |
2823 | 8166 | 4.115516 | CCTATTCGACATCTCACTTGGTG | 58.884 | 47.826 | 0.00 | 0.00 | 34.45 | 4.17 | R |
3584 | 9980 | 3.424703 | TCAATGAAGCAGAAGAAAGGGG | 58.575 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 51 | 2.949177 | AAGGTGTGATGGCTTGTGTA | 57.051 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
216 | 217 | 3.736252 | GGTCACAATGGATTAGATCGACG | 59.264 | 47.826 | 0.00 | 0.00 | 0.00 | 5.12 |
244 | 245 | 5.649831 | GCCATCCACATCTTTTCTTCTAAGT | 59.350 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
475 | 663 | 9.461312 | AGTTTGTTTGATTCCTATGCATACTTA | 57.539 | 29.630 | 1.16 | 0.00 | 0.00 | 2.24 |
548 | 997 | 5.213597 | AAGCACGTATGTGTTTGTCTGTCA | 61.214 | 41.667 | 15.42 | 0.00 | 46.14 | 3.58 |
566 | 1015 | 3.704566 | TGTCATGAAGTTAGGGTCGCTAT | 59.295 | 43.478 | 0.00 | 0.00 | 0.00 | 2.97 |
574 | 1023 | 1.452953 | TAGGGTCGCTATGCCGTGAG | 61.453 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
715 | 1166 | 7.255139 | CCGTTGAATCTTGTAGGAGTTTTTCTT | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
716 | 1167 | 8.770828 | CGTTGAATCTTGTAGGAGTTTTTCTTA | 58.229 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
768 | 1228 | 0.953471 | TGGTTCTGTGCACATACGGC | 60.953 | 55.000 | 22.00 | 10.12 | 0.00 | 5.68 |
777 | 1237 | 1.212616 | GCACATACGGCTAGCTTCTG | 58.787 | 55.000 | 15.72 | 9.74 | 0.00 | 3.02 |
778 | 1238 | 1.202417 | GCACATACGGCTAGCTTCTGA | 60.202 | 52.381 | 15.72 | 0.00 | 0.00 | 3.27 |
779 | 1239 | 2.738643 | GCACATACGGCTAGCTTCTGAA | 60.739 | 50.000 | 15.72 | 0.00 | 0.00 | 3.02 |
780 | 1240 | 3.521560 | CACATACGGCTAGCTTCTGAAA | 58.478 | 45.455 | 15.72 | 0.00 | 0.00 | 2.69 |
781 | 1241 | 3.932710 | CACATACGGCTAGCTTCTGAAAA | 59.067 | 43.478 | 15.72 | 0.00 | 0.00 | 2.29 |
782 | 1242 | 4.572389 | CACATACGGCTAGCTTCTGAAAAT | 59.428 | 41.667 | 15.72 | 0.00 | 0.00 | 1.82 |
783 | 1243 | 4.811557 | ACATACGGCTAGCTTCTGAAAATC | 59.188 | 41.667 | 15.72 | 0.00 | 0.00 | 2.17 |
784 | 1244 | 3.334583 | ACGGCTAGCTTCTGAAAATCA | 57.665 | 42.857 | 15.72 | 0.00 | 0.00 | 2.57 |
785 | 1245 | 3.674997 | ACGGCTAGCTTCTGAAAATCAA | 58.325 | 40.909 | 15.72 | 0.00 | 0.00 | 2.57 |
786 | 1246 | 4.265073 | ACGGCTAGCTTCTGAAAATCAAT | 58.735 | 39.130 | 15.72 | 0.00 | 0.00 | 2.57 |
787 | 1247 | 4.333926 | ACGGCTAGCTTCTGAAAATCAATC | 59.666 | 41.667 | 15.72 | 0.00 | 0.00 | 2.67 |
788 | 1248 | 4.574013 | CGGCTAGCTTCTGAAAATCAATCT | 59.426 | 41.667 | 15.72 | 0.00 | 0.00 | 2.40 |
789 | 1249 | 5.277250 | CGGCTAGCTTCTGAAAATCAATCTC | 60.277 | 44.000 | 15.72 | 0.00 | 0.00 | 2.75 |
790 | 1250 | 5.821995 | GGCTAGCTTCTGAAAATCAATCTCT | 59.178 | 40.000 | 15.72 | 0.00 | 0.00 | 3.10 |
791 | 1251 | 6.018016 | GGCTAGCTTCTGAAAATCAATCTCTC | 60.018 | 42.308 | 15.72 | 0.00 | 0.00 | 3.20 |
792 | 1252 | 6.762661 | GCTAGCTTCTGAAAATCAATCTCTCT | 59.237 | 38.462 | 7.70 | 0.00 | 0.00 | 3.10 |
793 | 1253 | 7.280652 | GCTAGCTTCTGAAAATCAATCTCTCTT | 59.719 | 37.037 | 7.70 | 0.00 | 0.00 | 2.85 |
794 | 1254 | 7.999450 | AGCTTCTGAAAATCAATCTCTCTTT | 57.001 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
795 | 1255 | 8.406730 | AGCTTCTGAAAATCAATCTCTCTTTT | 57.593 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
796 | 1256 | 8.858094 | AGCTTCTGAAAATCAATCTCTCTTTTT | 58.142 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
902 | 1386 | 4.500116 | GAGCTCTCGTGGGCCGTC | 62.500 | 72.222 | 6.43 | 0.00 | 37.94 | 4.79 |
919 | 1407 | 2.294074 | CGTCTCTTCTCTCTCCGGATT | 58.706 | 52.381 | 3.57 | 0.00 | 0.00 | 3.01 |
962 | 1455 | 3.379445 | ATTGTGGGCTGCTGCTGC | 61.379 | 61.111 | 21.42 | 21.42 | 39.59 | 5.25 |
969 | 1462 | 3.797546 | GCTGCTGCTGCTTCGACC | 61.798 | 66.667 | 22.10 | 0.00 | 40.48 | 4.79 |
1248 | 2648 | 1.078426 | CGAGGGCTTCCGTTTCCAT | 60.078 | 57.895 | 0.00 | 0.00 | 35.17 | 3.41 |
1254 | 2654 | 1.664873 | GCTTCCGTTTCCATCCTACC | 58.335 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1354 | 5024 | 2.832498 | GCCATGGCCTCCTACTCC | 59.168 | 66.667 | 27.24 | 0.00 | 34.56 | 3.85 |
1355 | 5025 | 2.072487 | GCCATGGCCTCCTACTCCA | 61.072 | 63.158 | 27.24 | 0.00 | 34.56 | 3.86 |
1619 | 6510 | 4.694760 | TCTCAACACCATATCCATCCAG | 57.305 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1628 | 6543 | 3.008813 | CCATATCCATCCAGACTTCCCAG | 59.991 | 52.174 | 0.00 | 0.00 | 0.00 | 4.45 |
1634 | 6549 | 1.434188 | TCCAGACTTCCCAGCAAGAA | 58.566 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1636 | 6551 | 2.376518 | TCCAGACTTCCCAGCAAGAATT | 59.623 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
1851 | 6772 | 4.767409 | GGCCTTGGTATTCTCTTTCTGTTT | 59.233 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
1886 | 6809 | 2.103263 | AGTTATGGAAGATGGAGACCGC | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1944 | 6873 | 2.731976 | CGTTGAACTGGACAAGCTACTC | 59.268 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1952 | 6881 | 1.616628 | ACAAGCTACTCCCCCTGGG | 60.617 | 63.158 | 5.50 | 5.50 | 46.11 | 4.45 |
1994 | 7034 | 2.562298 | CAGAAGAGGAGTGCTCAGAAGT | 59.438 | 50.000 | 14.66 | 0.00 | 0.00 | 3.01 |
2007 | 7047 | 4.160439 | TGCTCAGAAGTGGAAGATAACGAT | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 3.73 |
2254 | 7339 | 8.830580 | TGATCGAATTCTATTTTCACATCCTTC | 58.169 | 33.333 | 3.52 | 0.00 | 0.00 | 3.46 |
2258 | 7343 | 4.487714 | TCTATTTTCACATCCTTCCGCT | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 5.52 |
2384 | 7479 | 4.382291 | TGTGTGGTGGTGTTCTATGTAAC | 58.618 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
2399 | 7494 | 8.885722 | GTTCTATGTAACGGTTATGATTTGGAA | 58.114 | 33.333 | 3.59 | 1.52 | 0.00 | 3.53 |
2433 | 7530 | 1.825474 | GTGGTAGCTAGCCAGTTCTGA | 59.175 | 52.381 | 19.78 | 0.00 | 36.57 | 3.27 |
2457 | 7554 | 8.602424 | TGATTTTCTGGAGAGGTGATTTTACTA | 58.398 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2548 | 7653 | 9.771915 | AAAATGTAGCAATGTTTTTCTTTGTTG | 57.228 | 25.926 | 0.00 | 0.00 | 34.83 | 3.33 |
2569 | 7863 | 9.817809 | TTGTTGTTCTCATACTCTATTATGGAC | 57.182 | 33.333 | 0.00 | 0.00 | 31.33 | 4.02 |
2647 | 7950 | 8.733458 | TCATCCTAGAATGAAACAATGACAAAG | 58.267 | 33.333 | 0.00 | 0.00 | 32.80 | 2.77 |
2750 | 8055 | 8.573885 | ACGTTAGTATTAATGCATAGCTACAGA | 58.426 | 33.333 | 0.00 | 0.00 | 30.38 | 3.41 |
2807 | 8148 | 6.801539 | TGGAAATTGAGACAACTACATGAC | 57.198 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2851 | 8194 | 7.429633 | CAAGTGAGATGTCGAATAGGTAGATT | 58.570 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
2906 | 8250 | 8.642908 | TCAATATTGTTATCACTGGTCTTACG | 57.357 | 34.615 | 14.97 | 0.00 | 0.00 | 3.18 |
3117 | 9452 | 3.071580 | GCATGGAGCGAGCTTAAGT | 57.928 | 52.632 | 4.02 | 0.00 | 0.00 | 2.24 |
3267 | 9608 | 9.737427 | GATGGGTATATGTTTATCTACTCATCG | 57.263 | 37.037 | 8.82 | 0.00 | 40.75 | 3.84 |
3269 | 9610 | 8.737175 | TGGGTATATGTTTATCTACTCATCGTC | 58.263 | 37.037 | 0.00 | 0.00 | 25.63 | 4.20 |
3366 | 9759 | 8.047911 | TCCCCTCGTATCTACTTAATCTGATAG | 58.952 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
3594 | 9990 | 6.758416 | GCACAATGAAATATTCCCCTTTCTTC | 59.242 | 38.462 | 0.00 | 0.00 | 33.50 | 2.87 |
3702 | 10100 | 3.572255 | TGTGATTTTAAGTTGTCCCCTGC | 59.428 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
3741 | 10140 | 3.511146 | CCCAACAATACTGAGCATTTGGT | 59.489 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3976 | 10818 | 9.832445 | TTCAAAATATTGACTACATACTCCCTC | 57.168 | 33.333 | 0.00 | 0.00 | 45.01 | 4.30 |
3977 | 10819 | 8.429641 | TCAAAATATTGACTACATACTCCCTCC | 58.570 | 37.037 | 0.00 | 0.00 | 40.59 | 4.30 |
3978 | 10820 | 6.591750 | AATATTGACTACATACTCCCTCCG | 57.408 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3979 | 10821 | 3.377253 | TTGACTACATACTCCCTCCGT | 57.623 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
3980 | 10822 | 2.928334 | TGACTACATACTCCCTCCGTC | 58.072 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
3981 | 10823 | 2.228925 | GACTACATACTCCCTCCGTCC | 58.771 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
3982 | 10824 | 1.236628 | CTACATACTCCCTCCGTCCG | 58.763 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3983 | 10825 | 0.179009 | TACATACTCCCTCCGTCCGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3984 | 10826 | 1.152819 | CATACTCCCTCCGTCCGGA | 60.153 | 63.158 | 0.00 | 0.00 | 42.90 | 5.14 |
3985 | 10827 | 0.754217 | CATACTCCCTCCGTCCGGAA | 60.754 | 60.000 | 5.23 | 0.00 | 44.66 | 4.30 |
3986 | 10828 | 0.032813 | ATACTCCCTCCGTCCGGAAA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 3.13 |
3987 | 10829 | 0.251742 | TACTCCCTCCGTCCGGAAAA | 60.252 | 55.000 | 5.23 | 0.00 | 44.66 | 2.29 |
3988 | 10830 | 1.218316 | CTCCCTCCGTCCGGAAAAG | 59.782 | 63.158 | 5.23 | 3.59 | 44.66 | 2.27 |
3989 | 10831 | 2.436115 | CCCTCCGTCCGGAAAAGC | 60.436 | 66.667 | 5.23 | 0.00 | 44.66 | 3.51 |
3990 | 10832 | 2.663196 | CCTCCGTCCGGAAAAGCT | 59.337 | 61.111 | 5.23 | 0.00 | 44.66 | 3.74 |
3991 | 10833 | 1.003718 | CCTCCGTCCGGAAAAGCTT | 60.004 | 57.895 | 5.23 | 0.00 | 44.66 | 3.74 |
3992 | 10834 | 1.298859 | CCTCCGTCCGGAAAAGCTTG | 61.299 | 60.000 | 5.23 | 0.00 | 44.66 | 4.01 |
3993 | 10835 | 0.602905 | CTCCGTCCGGAAAAGCTTGT | 60.603 | 55.000 | 5.23 | 0.00 | 44.66 | 3.16 |
3994 | 10836 | 0.601841 | TCCGTCCGGAAAAGCTTGTC | 60.602 | 55.000 | 5.23 | 8.23 | 42.05 | 3.18 |
3995 | 10837 | 1.574702 | CCGTCCGGAAAAGCTTGTCC | 61.575 | 60.000 | 24.00 | 24.00 | 37.50 | 4.02 |
3996 | 10838 | 1.574702 | CGTCCGGAAAAGCTTGTCCC | 61.575 | 60.000 | 26.94 | 13.97 | 0.00 | 4.46 |
3997 | 10839 | 0.250770 | GTCCGGAAAAGCTTGTCCCT | 60.251 | 55.000 | 26.94 | 0.00 | 0.00 | 4.20 |
3998 | 10840 | 0.036306 | TCCGGAAAAGCTTGTCCCTC | 59.964 | 55.000 | 26.94 | 5.77 | 0.00 | 4.30 |
3999 | 10841 | 0.250727 | CCGGAAAAGCTTGTCCCTCA | 60.251 | 55.000 | 26.94 | 0.00 | 0.00 | 3.86 |
4000 | 10842 | 1.604604 | CGGAAAAGCTTGTCCCTCAA | 58.395 | 50.000 | 26.94 | 0.00 | 34.61 | 3.02 |
4001 | 10843 | 1.953686 | CGGAAAAGCTTGTCCCTCAAA | 59.046 | 47.619 | 26.94 | 0.00 | 35.48 | 2.69 |
4002 | 10844 | 2.558359 | CGGAAAAGCTTGTCCCTCAAAT | 59.442 | 45.455 | 26.94 | 0.00 | 35.48 | 2.32 |
4003 | 10845 | 3.612479 | CGGAAAAGCTTGTCCCTCAAATG | 60.612 | 47.826 | 26.94 | 9.69 | 35.48 | 2.32 |
4004 | 10846 | 3.306294 | GGAAAAGCTTGTCCCTCAAATGG | 60.306 | 47.826 | 23.49 | 0.00 | 35.48 | 3.16 |
4005 | 10847 | 2.978156 | AAGCTTGTCCCTCAAATGGA | 57.022 | 45.000 | 0.00 | 0.00 | 35.48 | 3.41 |
4006 | 10848 | 3.463048 | AAGCTTGTCCCTCAAATGGAT | 57.537 | 42.857 | 0.00 | 0.00 | 35.48 | 3.41 |
4007 | 10849 | 2.731572 | AGCTTGTCCCTCAAATGGATG | 58.268 | 47.619 | 0.00 | 0.00 | 35.48 | 3.51 |
4008 | 10850 | 2.042162 | AGCTTGTCCCTCAAATGGATGT | 59.958 | 45.455 | 0.00 | 0.00 | 35.48 | 3.06 |
4009 | 10851 | 3.266772 | AGCTTGTCCCTCAAATGGATGTA | 59.733 | 43.478 | 0.00 | 0.00 | 35.48 | 2.29 |
4010 | 10852 | 4.079558 | AGCTTGTCCCTCAAATGGATGTAT | 60.080 | 41.667 | 0.00 | 0.00 | 35.48 | 2.29 |
4011 | 10853 | 4.276926 | GCTTGTCCCTCAAATGGATGTATC | 59.723 | 45.833 | 0.00 | 0.00 | 35.48 | 2.24 |
4012 | 10854 | 5.688807 | CTTGTCCCTCAAATGGATGTATCT | 58.311 | 41.667 | 0.00 | 0.00 | 35.48 | 1.98 |
4013 | 10855 | 6.688922 | GCTTGTCCCTCAAATGGATGTATCTA | 60.689 | 42.308 | 0.00 | 0.00 | 35.48 | 1.98 |
4014 | 10856 | 6.425210 | TGTCCCTCAAATGGATGTATCTAG | 57.575 | 41.667 | 0.00 | 0.00 | 33.65 | 2.43 |
4015 | 10857 | 5.221722 | TGTCCCTCAAATGGATGTATCTAGC | 60.222 | 44.000 | 0.00 | 0.00 | 33.65 | 3.42 |
4016 | 10858 | 4.907269 | TCCCTCAAATGGATGTATCTAGCA | 59.093 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
4017 | 10859 | 4.999950 | CCCTCAAATGGATGTATCTAGCAC | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
4018 | 10860 | 4.999950 | CCTCAAATGGATGTATCTAGCACC | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
4019 | 10861 | 5.455183 | CCTCAAATGGATGTATCTAGCACCA | 60.455 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4020 | 10862 | 6.000246 | TCAAATGGATGTATCTAGCACCAA | 58.000 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
4021 | 10863 | 6.057533 | TCAAATGGATGTATCTAGCACCAAG | 58.942 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4022 | 10864 | 5.636903 | AATGGATGTATCTAGCACCAAGT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4023 | 10865 | 5.636903 | ATGGATGTATCTAGCACCAAGTT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
4024 | 10866 | 6.747414 | ATGGATGTATCTAGCACCAAGTTA | 57.253 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
4025 | 10867 | 6.161855 | TGGATGTATCTAGCACCAAGTTAG | 57.838 | 41.667 | 0.00 | 0.00 | 32.79 | 2.34 |
4026 | 10868 | 5.661312 | TGGATGTATCTAGCACCAAGTTAGT | 59.339 | 40.000 | 0.00 | 0.00 | 33.25 | 2.24 |
4027 | 10869 | 5.986135 | GGATGTATCTAGCACCAAGTTAGTG | 59.014 | 44.000 | 0.00 | 0.00 | 38.30 | 2.74 |
4039 | 10881 | 5.986135 | CACCAAGTTAGTGCTAGATACATCC | 59.014 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4040 | 10882 | 5.661312 | ACCAAGTTAGTGCTAGATACATCCA | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4041 | 10883 | 6.327626 | ACCAAGTTAGTGCTAGATACATCCAT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
4042 | 10884 | 7.147479 | ACCAAGTTAGTGCTAGATACATCCATT | 60.147 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4043 | 10885 | 7.716998 | CCAAGTTAGTGCTAGATACATCCATTT | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
4044 | 10886 | 8.554528 | CAAGTTAGTGCTAGATACATCCATTTG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
4045 | 10887 | 8.023021 | AGTTAGTGCTAGATACATCCATTTGA | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
4046 | 10888 | 8.147058 | AGTTAGTGCTAGATACATCCATTTGAG | 58.853 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
4047 | 10889 | 6.737720 | AGTGCTAGATACATCCATTTGAGA | 57.262 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
4048 | 10890 | 6.757237 | AGTGCTAGATACATCCATTTGAGAG | 58.243 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
4049 | 10891 | 6.552725 | AGTGCTAGATACATCCATTTGAGAGA | 59.447 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
4050 | 10892 | 6.644592 | GTGCTAGATACATCCATTTGAGAGAC | 59.355 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
4051 | 10893 | 6.324770 | TGCTAGATACATCCATTTGAGAGACA | 59.675 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
4052 | 10894 | 7.147672 | TGCTAGATACATCCATTTGAGAGACAA | 60.148 | 37.037 | 0.00 | 0.00 | 36.65 | 3.18 |
4053 | 10895 | 7.384660 | GCTAGATACATCCATTTGAGAGACAAG | 59.615 | 40.741 | 0.00 | 0.00 | 39.77 | 3.16 |
4054 | 10896 | 6.054295 | AGATACATCCATTTGAGAGACAAGC | 58.946 | 40.000 | 0.00 | 0.00 | 39.77 | 4.01 |
4055 | 10897 | 4.298103 | ACATCCATTTGAGAGACAAGCT | 57.702 | 40.909 | 0.00 | 0.00 | 39.77 | 3.74 |
4056 | 10898 | 4.660168 | ACATCCATTTGAGAGACAAGCTT | 58.340 | 39.130 | 0.00 | 0.00 | 39.77 | 3.74 |
4057 | 10899 | 5.075493 | ACATCCATTTGAGAGACAAGCTTT | 58.925 | 37.500 | 0.00 | 0.00 | 39.77 | 3.51 |
4058 | 10900 | 5.537674 | ACATCCATTTGAGAGACAAGCTTTT | 59.462 | 36.000 | 0.00 | 0.00 | 39.77 | 2.27 |
4059 | 10901 | 6.041296 | ACATCCATTTGAGAGACAAGCTTTTT | 59.959 | 34.615 | 0.00 | 0.00 | 39.77 | 1.94 |
4060 | 10902 | 6.076981 | TCCATTTGAGAGACAAGCTTTTTC | 57.923 | 37.500 | 0.00 | 0.00 | 39.77 | 2.29 |
4061 | 10903 | 4.913924 | CCATTTGAGAGACAAGCTTTTTCG | 59.086 | 41.667 | 0.00 | 0.00 | 39.77 | 3.46 |
4062 | 10904 | 4.552166 | TTTGAGAGACAAGCTTTTTCGG | 57.448 | 40.909 | 0.00 | 0.00 | 39.77 | 4.30 |
4063 | 10905 | 3.469008 | TGAGAGACAAGCTTTTTCGGA | 57.531 | 42.857 | 0.00 | 0.00 | 0.00 | 4.55 |
4064 | 10906 | 3.131396 | TGAGAGACAAGCTTTTTCGGAC | 58.869 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
4065 | 10907 | 2.135933 | AGAGACAAGCTTTTTCGGACG | 58.864 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
4066 | 10908 | 1.194772 | GAGACAAGCTTTTTCGGACGG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4067 | 10909 | 1.202604 | AGACAAGCTTTTTCGGACGGA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
4068 | 10910 | 1.194772 | GACAAGCTTTTTCGGACGGAG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
4069 | 10911 | 0.517316 | CAAGCTTTTTCGGACGGAGG | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4070 | 10912 | 0.605589 | AAGCTTTTTCGGACGGAGGG | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4071 | 10913 | 1.004200 | GCTTTTTCGGACGGAGGGA | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
4072 | 10914 | 1.019805 | GCTTTTTCGGACGGAGGGAG | 61.020 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4073 | 10915 | 0.320697 | CTTTTTCGGACGGAGGGAGT | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4074 | 10916 | 1.547372 | CTTTTTCGGACGGAGGGAGTA | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
4075 | 10917 | 0.890683 | TTTTCGGACGGAGGGAGTAC | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4200 | 11042 | 7.116662 | TGAGATTGAAAGCATGCAAAACATTAC | 59.883 | 33.333 | 21.98 | 5.49 | 36.64 | 1.89 |
4270 | 11112 | 8.918202 | AATATTCTCACTGTAGTTTTTCACCA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
4469 | 11313 | 4.731313 | AACCTCTTCCAAGATTCACCTT | 57.269 | 40.909 | 0.00 | 0.00 | 33.93 | 3.50 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 8.449423 | ACCCAAGTTAGATATATATGGCTTGA | 57.551 | 34.615 | 18.82 | 0.00 | 35.47 | 3.02 |
8 | 9 | 9.614792 | CCTTAACCCAAGTTAGATATATATGGC | 57.385 | 37.037 | 0.00 | 0.00 | 39.58 | 4.40 |
50 | 51 | 7.394359 | AGTGTCACATGCTACCATTTTATTTCT | 59.606 | 33.333 | 5.62 | 0.00 | 0.00 | 2.52 |
216 | 217 | 2.494870 | AGAAAAGATGTGGATGGCTTGC | 59.505 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
423 | 428 | 3.340928 | TGAAGGACATGAAGAGCACATG | 58.659 | 45.455 | 0.00 | 0.00 | 46.96 | 3.21 |
435 | 440 | 4.942761 | AACAAACTTGCATGAAGGACAT | 57.057 | 36.364 | 6.60 | 0.00 | 40.17 | 3.06 |
548 | 997 | 2.224305 | GGCATAGCGACCCTAACTTCAT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
585 | 1034 | 1.813513 | CCCCTAATGTGATCGCCATC | 58.186 | 55.000 | 3.31 | 0.00 | 0.00 | 3.51 |
597 | 1047 | 2.031870 | GAAAATTCAGCCGCCCCTAAT | 58.968 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
602 | 1052 | 0.603065 | ACAAGAAAATTCAGCCGCCC | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
732 | 1189 | 9.030301 | CACAGAACCAACAAAAATAGTAAAAGG | 57.970 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
768 | 1228 | 8.721019 | AAGAGAGATTGATTTTCAGAAGCTAG | 57.279 | 34.615 | 0.00 | 0.00 | 0.00 | 3.42 |
804 | 1264 | 9.059260 | CCCTTTTGATTGATTTTCACAATTTCT | 57.941 | 29.630 | 0.00 | 0.00 | 37.96 | 2.52 |
805 | 1265 | 7.804600 | GCCCTTTTGATTGATTTTCACAATTTC | 59.195 | 33.333 | 0.00 | 0.00 | 37.96 | 2.17 |
806 | 1266 | 7.284944 | TGCCCTTTTGATTGATTTTCACAATTT | 59.715 | 29.630 | 0.00 | 0.00 | 37.96 | 1.82 |
807 | 1267 | 6.771749 | TGCCCTTTTGATTGATTTTCACAATT | 59.228 | 30.769 | 0.00 | 0.00 | 37.96 | 2.32 |
808 | 1268 | 6.297582 | TGCCCTTTTGATTGATTTTCACAAT | 58.702 | 32.000 | 0.00 | 0.00 | 40.08 | 2.71 |
809 | 1269 | 5.678583 | TGCCCTTTTGATTGATTTTCACAA | 58.321 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
810 | 1270 | 5.287674 | TGCCCTTTTGATTGATTTTCACA | 57.712 | 34.783 | 0.00 | 0.00 | 0.00 | 3.58 |
811 | 1271 | 6.616774 | TTTGCCCTTTTGATTGATTTTCAC | 57.383 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
812 | 1272 | 7.636150 | TTTTTGCCCTTTTGATTGATTTTCA | 57.364 | 28.000 | 0.00 | 0.00 | 0.00 | 2.69 |
902 | 1386 | 3.020274 | TGTCAATCCGGAGAGAGAAGAG | 58.980 | 50.000 | 11.34 | 0.00 | 0.00 | 2.85 |
903 | 1387 | 3.087370 | TGTCAATCCGGAGAGAGAAGA | 57.913 | 47.619 | 11.34 | 0.00 | 0.00 | 2.87 |
919 | 1407 | 4.442706 | GAGTGACACTCCTTTCTTTGTCA | 58.557 | 43.478 | 22.77 | 0.00 | 44.68 | 3.58 |
946 | 1434 | 4.591399 | AGCAGCAGCAGCCCACAA | 62.591 | 61.111 | 6.10 | 0.00 | 45.49 | 3.33 |
947 | 1435 | 4.591399 | AAGCAGCAGCAGCCCACA | 62.591 | 61.111 | 6.10 | 0.00 | 45.49 | 4.17 |
948 | 1436 | 3.745803 | GAAGCAGCAGCAGCCCAC | 61.746 | 66.667 | 6.10 | 0.00 | 45.49 | 4.61 |
951 | 1439 | 3.797546 | GTCGAAGCAGCAGCAGCC | 61.798 | 66.667 | 6.10 | 0.00 | 45.49 | 4.85 |
952 | 1440 | 3.797546 | GGTCGAAGCAGCAGCAGC | 61.798 | 66.667 | 3.17 | 0.46 | 45.49 | 5.25 |
953 | 1441 | 3.123620 | GGGTCGAAGCAGCAGCAG | 61.124 | 66.667 | 3.17 | 0.00 | 45.49 | 4.24 |
962 | 1455 | 2.663196 | GAGGTGGTGGGGTCGAAG | 59.337 | 66.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1354 | 5024 | 0.107831 | TTCCCTGTTCCGTGGAAGTG | 59.892 | 55.000 | 0.53 | 0.00 | 33.33 | 3.16 |
1355 | 5025 | 0.108019 | GTTCCCTGTTCCGTGGAAGT | 59.892 | 55.000 | 0.53 | 0.00 | 38.77 | 3.01 |
1619 | 6510 | 4.096984 | CCATACAATTCTTGCTGGGAAGTC | 59.903 | 45.833 | 2.09 | 0.00 | 34.71 | 3.01 |
1628 | 6543 | 5.358160 | AGAGTAAAGCCCATACAATTCTTGC | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1634 | 6549 | 5.045578 | ACACTCAGAGTAAAGCCCATACAAT | 60.046 | 40.000 | 1.67 | 0.00 | 0.00 | 2.71 |
1636 | 6551 | 3.838317 | ACACTCAGAGTAAAGCCCATACA | 59.162 | 43.478 | 1.67 | 0.00 | 0.00 | 2.29 |
1851 | 6772 | 2.948979 | CCATAACTGGGCGCTGAATTTA | 59.051 | 45.455 | 14.63 | 3.54 | 39.04 | 1.40 |
1952 | 6881 | 6.177610 | TCTGAGTTCTCTTCCTCTTCTAGAC | 58.822 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1994 | 7034 | 5.130350 | GGAATGGGAAATCGTTATCTTCCA | 58.870 | 41.667 | 2.74 | 0.00 | 40.42 | 3.53 |
2007 | 7047 | 4.079443 | CCTTGTATACCTGGGAATGGGAAA | 60.079 | 45.833 | 0.00 | 0.00 | 0.00 | 3.13 |
2232 | 7317 | 6.422223 | CGGAAGGATGTGAAAATAGAATTCG | 58.578 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2237 | 7322 | 4.162320 | AGAGCGGAAGGATGTGAAAATAGA | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
2399 | 7494 | 7.423199 | GCTAGCTACCACTAAAAGTTGTTTTT | 58.577 | 34.615 | 7.70 | 0.00 | 41.68 | 1.94 |
2457 | 7554 | 9.901172 | AACTAAGGGAACTAAAAATCACGATAT | 57.099 | 29.630 | 0.00 | 0.00 | 42.68 | 1.63 |
2569 | 7863 | 7.770433 | TCACACCTCTGATTCAAACCATATAAG | 59.230 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2725 | 8030 | 8.965986 | TCTGTAGCTATGCATTAATACTAACG | 57.034 | 34.615 | 3.54 | 0.00 | 0.00 | 3.18 |
2823 | 8166 | 4.115516 | CCTATTCGACATCTCACTTGGTG | 58.884 | 47.826 | 0.00 | 0.00 | 34.45 | 4.17 |
2851 | 8194 | 5.709631 | TGAAAGCTTCATAATGTGCCAACTA | 59.290 | 36.000 | 0.00 | 0.00 | 34.08 | 2.24 |
3067 | 9382 | 9.507280 | CGGATAAAATAAAATATAGCCATGCTG | 57.493 | 33.333 | 0.00 | 0.00 | 40.10 | 4.41 |
3117 | 9452 | 8.337739 | TGAAGGGGCAAGTTACCTAAAATTATA | 58.662 | 33.333 | 0.00 | 0.00 | 33.37 | 0.98 |
3324 | 9667 | 5.105752 | CGAGGGGAAATCGATGAGATATTC | 58.894 | 45.833 | 0.00 | 0.00 | 42.76 | 1.75 |
3366 | 9759 | 6.591834 | CAGCTATGCACTAATAGTACCATTCC | 59.408 | 42.308 | 9.85 | 4.19 | 33.42 | 3.01 |
3584 | 9980 | 3.424703 | TCAATGAAGCAGAAGAAAGGGG | 58.575 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
3702 | 10100 | 4.236935 | GTTGGGCATCAATTACTTGTGTG | 58.763 | 43.478 | 0.00 | 0.00 | 37.73 | 3.82 |
3758 | 10158 | 7.057894 | TGGCAATTTATATAGGTCCGAGTTTT | 58.942 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
3767 | 10167 | 9.985730 | CAATGTGAAATGGCAATTTATATAGGT | 57.014 | 29.630 | 0.00 | 0.00 | 36.10 | 3.08 |
3858 | 10540 | 6.867662 | AGAGTTACTGAAAACAACCAGATG | 57.132 | 37.500 | 0.00 | 0.00 | 34.65 | 2.90 |
3971 | 10813 | 2.951101 | GCTTTTCCGGACGGAGGGA | 61.951 | 63.158 | 13.64 | 1.83 | 46.06 | 4.20 |
3972 | 10814 | 2.436115 | GCTTTTCCGGACGGAGGG | 60.436 | 66.667 | 13.64 | 8.97 | 46.06 | 4.30 |
3973 | 10815 | 1.003718 | AAGCTTTTCCGGACGGAGG | 60.004 | 57.895 | 13.64 | 9.30 | 46.06 | 4.30 |
3974 | 10816 | 0.602905 | ACAAGCTTTTCCGGACGGAG | 60.603 | 55.000 | 13.64 | 3.27 | 46.06 | 4.63 |
3975 | 10817 | 0.601841 | GACAAGCTTTTCCGGACGGA | 60.602 | 55.000 | 1.83 | 9.76 | 43.52 | 4.69 |
3976 | 10818 | 1.574702 | GGACAAGCTTTTCCGGACGG | 61.575 | 60.000 | 15.65 | 3.96 | 0.00 | 4.79 |
3977 | 10819 | 1.574702 | GGGACAAGCTTTTCCGGACG | 61.575 | 60.000 | 22.30 | 0.00 | 32.00 | 4.79 |
3978 | 10820 | 0.250770 | AGGGACAAGCTTTTCCGGAC | 60.251 | 55.000 | 22.30 | 11.02 | 32.00 | 4.79 |
3979 | 10821 | 0.036306 | GAGGGACAAGCTTTTCCGGA | 59.964 | 55.000 | 22.30 | 0.00 | 32.00 | 5.14 |
3980 | 10822 | 0.250727 | TGAGGGACAAGCTTTTCCGG | 60.251 | 55.000 | 22.30 | 0.00 | 32.00 | 5.14 |
3981 | 10823 | 1.604604 | TTGAGGGACAAGCTTTTCCG | 58.395 | 50.000 | 22.30 | 2.85 | 34.20 | 4.30 |
3982 | 10824 | 3.306294 | CCATTTGAGGGACAAGCTTTTCC | 60.306 | 47.826 | 21.34 | 21.34 | 39.77 | 3.13 |
3983 | 10825 | 3.573967 | TCCATTTGAGGGACAAGCTTTTC | 59.426 | 43.478 | 3.91 | 3.91 | 39.77 | 2.29 |
3984 | 10826 | 3.575805 | TCCATTTGAGGGACAAGCTTTT | 58.424 | 40.909 | 0.00 | 0.00 | 39.77 | 2.27 |
3985 | 10827 | 3.243359 | TCCATTTGAGGGACAAGCTTT | 57.757 | 42.857 | 0.00 | 0.00 | 39.77 | 3.51 |
3986 | 10828 | 2.978156 | TCCATTTGAGGGACAAGCTT | 57.022 | 45.000 | 0.00 | 0.00 | 39.77 | 3.74 |
3987 | 10829 | 2.042162 | ACATCCATTTGAGGGACAAGCT | 59.958 | 45.455 | 0.00 | 0.00 | 39.77 | 3.74 |
3988 | 10830 | 2.450476 | ACATCCATTTGAGGGACAAGC | 58.550 | 47.619 | 0.00 | 0.00 | 39.77 | 4.01 |
3989 | 10831 | 5.688807 | AGATACATCCATTTGAGGGACAAG | 58.311 | 41.667 | 0.00 | 0.00 | 39.77 | 3.16 |
3990 | 10832 | 5.715439 | AGATACATCCATTTGAGGGACAA | 57.285 | 39.130 | 0.00 | 0.00 | 37.23 | 3.18 |
3991 | 10833 | 5.221722 | GCTAGATACATCCATTTGAGGGACA | 60.222 | 44.000 | 0.00 | 0.00 | 37.23 | 4.02 |
3992 | 10834 | 5.221722 | TGCTAGATACATCCATTTGAGGGAC | 60.222 | 44.000 | 0.00 | 0.00 | 37.23 | 4.46 |
3993 | 10835 | 4.907269 | TGCTAGATACATCCATTTGAGGGA | 59.093 | 41.667 | 0.00 | 0.00 | 39.14 | 4.20 |
3994 | 10836 | 4.999950 | GTGCTAGATACATCCATTTGAGGG | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3995 | 10837 | 4.999950 | GGTGCTAGATACATCCATTTGAGG | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
3996 | 10838 | 5.614308 | TGGTGCTAGATACATCCATTTGAG | 58.386 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3997 | 10839 | 5.628797 | TGGTGCTAGATACATCCATTTGA | 57.371 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3998 | 10840 | 5.824624 | ACTTGGTGCTAGATACATCCATTTG | 59.175 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3999 | 10841 | 6.006275 | ACTTGGTGCTAGATACATCCATTT | 57.994 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4000 | 10842 | 5.636903 | ACTTGGTGCTAGATACATCCATT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4001 | 10843 | 5.636903 | AACTTGGTGCTAGATACATCCAT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4002 | 10844 | 5.661312 | ACTAACTTGGTGCTAGATACATCCA | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4003 | 10845 | 5.986135 | CACTAACTTGGTGCTAGATACATCC | 59.014 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4015 | 10857 | 5.986135 | GGATGTATCTAGCACTAACTTGGTG | 59.014 | 44.000 | 0.97 | 0.97 | 37.70 | 4.17 |
4016 | 10858 | 5.661312 | TGGATGTATCTAGCACTAACTTGGT | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4017 | 10859 | 6.161855 | TGGATGTATCTAGCACTAACTTGG | 57.838 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
4018 | 10860 | 8.554528 | CAAATGGATGTATCTAGCACTAACTTG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4019 | 10861 | 8.486210 | TCAAATGGATGTATCTAGCACTAACTT | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
4020 | 10862 | 8.023021 | TCAAATGGATGTATCTAGCACTAACT | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4021 | 10863 | 8.144478 | TCTCAAATGGATGTATCTAGCACTAAC | 58.856 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
4022 | 10864 | 8.250143 | TCTCAAATGGATGTATCTAGCACTAA | 57.750 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4023 | 10865 | 7.725844 | TCTCTCAAATGGATGTATCTAGCACTA | 59.274 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
4024 | 10866 | 6.552725 | TCTCTCAAATGGATGTATCTAGCACT | 59.447 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
4025 | 10867 | 6.644592 | GTCTCTCAAATGGATGTATCTAGCAC | 59.355 | 42.308 | 0.00 | 0.00 | 0.00 | 4.40 |
4026 | 10868 | 6.324770 | TGTCTCTCAAATGGATGTATCTAGCA | 59.675 | 38.462 | 0.00 | 0.00 | 0.00 | 3.49 |
4027 | 10869 | 6.753180 | TGTCTCTCAAATGGATGTATCTAGC | 58.247 | 40.000 | 0.00 | 0.00 | 0.00 | 3.42 |
4028 | 10870 | 7.384660 | GCTTGTCTCTCAAATGGATGTATCTAG | 59.615 | 40.741 | 0.00 | 0.00 | 35.48 | 2.43 |
4029 | 10871 | 7.070447 | AGCTTGTCTCTCAAATGGATGTATCTA | 59.930 | 37.037 | 0.00 | 0.00 | 35.48 | 1.98 |
4030 | 10872 | 6.054295 | GCTTGTCTCTCAAATGGATGTATCT | 58.946 | 40.000 | 0.00 | 0.00 | 35.48 | 1.98 |
4031 | 10873 | 6.054295 | AGCTTGTCTCTCAAATGGATGTATC | 58.946 | 40.000 | 0.00 | 0.00 | 35.48 | 2.24 |
4032 | 10874 | 5.999044 | AGCTTGTCTCTCAAATGGATGTAT | 58.001 | 37.500 | 0.00 | 0.00 | 35.48 | 2.29 |
4033 | 10875 | 5.426689 | AGCTTGTCTCTCAAATGGATGTA | 57.573 | 39.130 | 0.00 | 0.00 | 35.48 | 2.29 |
4034 | 10876 | 4.298103 | AGCTTGTCTCTCAAATGGATGT | 57.702 | 40.909 | 0.00 | 0.00 | 35.48 | 3.06 |
4035 | 10877 | 5.640189 | AAAGCTTGTCTCTCAAATGGATG | 57.360 | 39.130 | 0.00 | 0.00 | 35.48 | 3.51 |
4036 | 10878 | 6.569226 | CGAAAAAGCTTGTCTCTCAAATGGAT | 60.569 | 38.462 | 0.00 | 0.00 | 35.48 | 3.41 |
4037 | 10879 | 5.277974 | CGAAAAAGCTTGTCTCTCAAATGGA | 60.278 | 40.000 | 0.00 | 0.00 | 35.48 | 3.41 |
4038 | 10880 | 4.913924 | CGAAAAAGCTTGTCTCTCAAATGG | 59.086 | 41.667 | 0.00 | 0.00 | 35.48 | 3.16 |
4039 | 10881 | 4.913924 | CCGAAAAAGCTTGTCTCTCAAATG | 59.086 | 41.667 | 0.00 | 0.00 | 35.48 | 2.32 |
4040 | 10882 | 4.821805 | TCCGAAAAAGCTTGTCTCTCAAAT | 59.178 | 37.500 | 0.00 | 0.00 | 35.48 | 2.32 |
4041 | 10883 | 4.035208 | GTCCGAAAAAGCTTGTCTCTCAAA | 59.965 | 41.667 | 0.00 | 0.00 | 35.48 | 2.69 |
4042 | 10884 | 3.560068 | GTCCGAAAAAGCTTGTCTCTCAA | 59.440 | 43.478 | 0.00 | 0.00 | 34.61 | 3.02 |
4043 | 10885 | 3.131396 | GTCCGAAAAAGCTTGTCTCTCA | 58.869 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
4044 | 10886 | 2.155924 | CGTCCGAAAAAGCTTGTCTCTC | 59.844 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
4045 | 10887 | 2.135933 | CGTCCGAAAAAGCTTGTCTCT | 58.864 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
4046 | 10888 | 1.194772 | CCGTCCGAAAAAGCTTGTCTC | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
4047 | 10889 | 1.202604 | TCCGTCCGAAAAAGCTTGTCT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
4048 | 10890 | 1.194772 | CTCCGTCCGAAAAAGCTTGTC | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
4049 | 10891 | 1.226746 | CTCCGTCCGAAAAAGCTTGT | 58.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4050 | 10892 | 0.517316 | CCTCCGTCCGAAAAAGCTTG | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
4051 | 10893 | 0.605589 | CCCTCCGTCCGAAAAAGCTT | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
4052 | 10894 | 1.003718 | CCCTCCGTCCGAAAAAGCT | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 3.74 |
4053 | 10895 | 1.004200 | TCCCTCCGTCCGAAAAAGC | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
4054 | 10896 | 0.320697 | ACTCCCTCCGTCCGAAAAAG | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4055 | 10897 | 1.273327 | GTACTCCCTCCGTCCGAAAAA | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 1.94 |
4056 | 10898 | 0.890683 | GTACTCCCTCCGTCCGAAAA | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4057 | 10899 | 0.251297 | TGTACTCCCTCCGTCCGAAA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4058 | 10900 | 0.033796 | ATGTACTCCCTCCGTCCGAA | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4059 | 10901 | 0.839277 | TATGTACTCCCTCCGTCCGA | 59.161 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
4060 | 10902 | 0.950116 | GTATGTACTCCCTCCGTCCG | 59.050 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4061 | 10903 | 2.361643 | AGTATGTACTCCCTCCGTCC | 57.638 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4062 | 10904 | 5.841957 | TTTTAGTATGTACTCCCTCCGTC | 57.158 | 43.478 | 0.00 | 0.00 | 37.73 | 4.79 |
4063 | 10905 | 5.895534 | TCATTTTAGTATGTACTCCCTCCGT | 59.104 | 40.000 | 0.00 | 0.00 | 37.73 | 4.69 |
4064 | 10906 | 6.040616 | ACTCATTTTAGTATGTACTCCCTCCG | 59.959 | 42.308 | 0.00 | 0.00 | 37.73 | 4.63 |
4065 | 10907 | 7.069578 | TCACTCATTTTAGTATGTACTCCCTCC | 59.930 | 40.741 | 0.00 | 0.00 | 37.73 | 4.30 |
4066 | 10908 | 8.008513 | TCACTCATTTTAGTATGTACTCCCTC | 57.991 | 38.462 | 0.00 | 0.00 | 37.73 | 4.30 |
4067 | 10909 | 7.973048 | TCACTCATTTTAGTATGTACTCCCT | 57.027 | 36.000 | 0.00 | 0.00 | 37.73 | 4.20 |
4068 | 10910 | 8.038944 | TGTTCACTCATTTTAGTATGTACTCCC | 58.961 | 37.037 | 0.00 | 0.00 | 37.73 | 4.30 |
4069 | 10911 | 8.997621 | TGTTCACTCATTTTAGTATGTACTCC | 57.002 | 34.615 | 0.00 | 0.00 | 37.73 | 3.85 |
4200 | 11042 | 9.749490 | CAAAATTGTATTTGCAAGATTTAGCTG | 57.251 | 29.630 | 0.00 | 0.00 | 33.90 | 4.24 |
4257 | 11099 | 8.403236 | AGTTACAAACTGATGGTGAAAAACTAC | 58.597 | 33.333 | 0.00 | 0.00 | 41.01 | 2.73 |
4469 | 11313 | 5.247110 | GGAGAGAGCATAAGGGATGTATTCA | 59.753 | 44.000 | 0.00 | 0.00 | 37.90 | 2.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.