Multiple sequence alignment - TraesCS1B01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G073300 chr1B 100.000 4430 0 0 1 4430 57382357 57377928 0.000000e+00 8181.0
1 TraesCS1B01G073300 chr1B 94.167 240 13 1 60 299 24633975 24633737 9.060000e-97 364.0
2 TraesCS1B01G073300 chr1D 90.491 2871 175 51 610 3424 37461152 37458324 0.000000e+00 3699.0
3 TraesCS1B01G073300 chr1D 88.347 369 28 8 4055 4411 37450861 37450496 3.170000e-116 429.0
4 TraesCS1B01G073300 chr1D 94.650 243 11 2 63 305 309072200 309071960 4.180000e-100 375.0
5 TraesCS1B01G073300 chr1D 87.143 280 22 6 3421 3688 37458232 37457955 5.570000e-79 305.0
6 TraesCS1B01G073300 chr1D 88.517 209 14 8 3684 3883 37451868 37451661 1.230000e-60 244.0
7 TraesCS1B01G073300 chr1D 86.702 188 22 3 386 572 37463305 37463120 5.810000e-49 206.0
8 TraesCS1B01G073300 chr1A 91.185 2337 136 33 1599 3883 36763276 36760958 0.000000e+00 3110.0
9 TraesCS1B01G073300 chr1A 90.380 842 60 12 747 1570 36764109 36763271 0.000000e+00 1086.0
10 TraesCS1B01G073300 chr1A 92.010 388 15 8 4055 4430 36760344 36759961 8.440000e-147 531.0
11 TraesCS1B01G073300 chr1A 86.933 375 36 12 385 749 36764519 36764148 4.120000e-110 409.0
12 TraesCS1B01G073300 chr1A 94.286 35 2 0 16 50 544368469 544368503 2.000000e-03 54.7
13 TraesCS1B01G073300 chr4B 92.403 1211 48 22 3252 4430 196401406 196402604 0.000000e+00 1687.0
14 TraesCS1B01G073300 chr4B 94.538 238 12 1 62 299 3438406 3438642 2.520000e-97 366.0
15 TraesCS1B01G073300 chr7D 85.726 1198 132 20 1357 2528 437424082 437425266 0.000000e+00 1229.0
16 TraesCS1B01G073300 chr7D 88.136 413 46 2 2609 3019 437425292 437425703 5.150000e-134 488.0
17 TraesCS1B01G073300 chr7A 85.986 1156 125 20 1392 2528 487631218 487632355 0.000000e+00 1203.0
18 TraesCS1B01G073300 chr7B 85.402 1144 132 14 1392 2528 454239255 454240370 0.000000e+00 1155.0
19 TraesCS1B01G073300 chr7B 90.511 411 38 1 2609 3019 454240396 454240805 3.900000e-150 542.0
20 TraesCS1B01G073300 chr7B 96.203 237 9 0 64 300 513064926 513064690 5.370000e-104 388.0
21 TraesCS1B01G073300 chr2B 89.119 579 24 19 3247 3796 15261288 15261856 0.000000e+00 684.0
22 TraesCS1B01G073300 chr2B 93.878 245 14 1 64 308 228762472 228762229 7.000000e-98 368.0
23 TraesCS1B01G073300 chrUn 94.538 238 12 1 62 299 48038206 48037970 2.520000e-97 366.0
24 TraesCS1B01G073300 chr4D 94.191 241 13 1 60 299 331067882 331068122 2.520000e-97 366.0
25 TraesCS1B01G073300 chr4A 94.167 240 13 1 60 299 99024252 99024490 9.060000e-97 364.0
26 TraesCS1B01G073300 chr4A 100.000 28 0 0 433 460 40285505 40285532 8.000000e-03 52.8
27 TraesCS1B01G073300 chr5A 93.117 247 16 1 63 309 487278846 487278601 1.170000e-95 361.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G073300 chr1B 57377928 57382357 4429 True 8181.000000 8181 100.0000 1 4430 1 chr1B.!!$R2 4429
1 TraesCS1B01G073300 chr1D 37457955 37463305 5350 True 1403.333333 3699 88.1120 386 3688 3 chr1D.!!$R3 3302
2 TraesCS1B01G073300 chr1D 37450496 37451868 1372 True 336.500000 429 88.4320 3684 4411 2 chr1D.!!$R2 727
3 TraesCS1B01G073300 chr1A 36759961 36764519 4558 True 1284.000000 3110 90.1270 385 4430 4 chr1A.!!$R1 4045
4 TraesCS1B01G073300 chr4B 196401406 196402604 1198 False 1687.000000 1687 92.4030 3252 4430 1 chr4B.!!$F2 1178
5 TraesCS1B01G073300 chr7D 437424082 437425703 1621 False 858.500000 1229 86.9310 1357 3019 2 chr7D.!!$F1 1662
6 TraesCS1B01G073300 chr7A 487631218 487632355 1137 False 1203.000000 1203 85.9860 1392 2528 1 chr7A.!!$F1 1136
7 TraesCS1B01G073300 chr7B 454239255 454240805 1550 False 848.500000 1155 87.9565 1392 3019 2 chr7B.!!$F1 1627
8 TraesCS1B01G073300 chr2B 15261288 15261856 568 False 684.000000 684 89.1190 3247 3796 1 chr2B.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.179215 CAGTTTAGAAGGCGCGCTTG 60.179 55.0 32.29 4.59 0.00 4.01 F
540 641 0.257039 GTCCAGCATCCCAACCAGAT 59.743 55.0 0.00 0.00 0.00 2.90 F
2283 4385 0.179197 CAGCATCTGCAGCTCAAACG 60.179 55.0 9.47 0.00 45.16 3.60 F
3249 5367 1.234821 GCTGGATGACGTTGTTGGAA 58.765 50.0 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 3214 0.856982 ACCATTCCAACCAACCCTCA 59.143 50.0 0.00 0.0 0.00 3.86 R
2529 4633 0.390603 CCACCGTCGGCTATTGAACA 60.391 55.0 12.28 0.0 0.00 3.18 R
3372 5504 0.740737 AATCTGCGCATAGGCAAACC 59.259 50.0 12.24 0.0 43.39 3.27 R
4311 7205 1.560923 CCTTAGAGATGTGAACGCGG 58.439 55.0 12.47 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.945904 ATTTTATTATCTTACTCCTTCCGATCC 57.054 33.333 0.00 0.00 0.00 3.36
31 32 8.486942 TTTATTATCTTACTCCTTCCGATCCA 57.513 34.615 0.00 0.00 0.00 3.41
32 33 8.666129 TTATTATCTTACTCCTTCCGATCCAT 57.334 34.615 0.00 0.00 0.00 3.41
33 34 9.763837 TTATTATCTTACTCCTTCCGATCCATA 57.236 33.333 0.00 0.00 0.00 2.74
34 35 8.846423 ATTATCTTACTCCTTCCGATCCATAT 57.154 34.615 0.00 0.00 0.00 1.78
35 36 8.666129 TTATCTTACTCCTTCCGATCCATATT 57.334 34.615 0.00 0.00 0.00 1.28
36 37 9.763837 TTATCTTACTCCTTCCGATCCATATTA 57.236 33.333 0.00 0.00 0.00 0.98
37 38 8.666129 ATCTTACTCCTTCCGATCCATATTAA 57.334 34.615 0.00 0.00 0.00 1.40
38 39 8.666129 TCTTACTCCTTCCGATCCATATTAAT 57.334 34.615 0.00 0.00 0.00 1.40
39 40 9.101325 TCTTACTCCTTCCGATCCATATTAATT 57.899 33.333 0.00 0.00 0.00 1.40
40 41 9.155975 CTTACTCCTTCCGATCCATATTAATTG 57.844 37.037 0.00 0.00 0.00 2.32
41 42 7.079451 ACTCCTTCCGATCCATATTAATTGT 57.921 36.000 0.00 0.00 0.00 2.71
42 43 7.162082 ACTCCTTCCGATCCATATTAATTGTC 58.838 38.462 0.00 0.00 0.00 3.18
43 44 6.472887 TCCTTCCGATCCATATTAATTGTCC 58.527 40.000 0.00 0.00 0.00 4.02
44 45 5.648092 CCTTCCGATCCATATTAATTGTCCC 59.352 44.000 0.00 0.00 0.00 4.46
45 46 6.448369 TTCCGATCCATATTAATTGTCCCT 57.552 37.500 0.00 0.00 0.00 4.20
46 47 7.311046 CCTTCCGATCCATATTAATTGTCCCTA 60.311 40.741 0.00 0.00 0.00 3.53
47 48 7.749377 TCCGATCCATATTAATTGTCCCTAT 57.251 36.000 0.00 0.00 0.00 2.57
48 49 8.158025 TCCGATCCATATTAATTGTCCCTATT 57.842 34.615 0.00 0.00 0.00 1.73
49 50 8.611257 TCCGATCCATATTAATTGTCCCTATTT 58.389 33.333 0.00 0.00 0.00 1.40
50 51 9.243105 CCGATCCATATTAATTGTCCCTATTTT 57.757 33.333 0.00 0.00 0.00 1.82
77 78 9.939802 AATATAATTTTATACTCCCTCCGTCAC 57.060 33.333 0.00 0.00 0.00 3.67
78 79 5.687166 AATTTTATACTCCCTCCGTCACA 57.313 39.130 0.00 0.00 0.00 3.58
79 80 4.730949 TTTTATACTCCCTCCGTCACAG 57.269 45.455 0.00 0.00 0.00 3.66
80 81 3.377253 TTATACTCCCTCCGTCACAGT 57.623 47.619 0.00 0.00 0.00 3.55
81 82 2.233305 ATACTCCCTCCGTCACAGTT 57.767 50.000 0.00 0.00 0.00 3.16
82 83 2.005370 TACTCCCTCCGTCACAGTTT 57.995 50.000 0.00 0.00 0.00 2.66
83 84 2.005370 ACTCCCTCCGTCACAGTTTA 57.995 50.000 0.00 0.00 0.00 2.01
84 85 1.893801 ACTCCCTCCGTCACAGTTTAG 59.106 52.381 0.00 0.00 0.00 1.85
85 86 2.168496 CTCCCTCCGTCACAGTTTAGA 58.832 52.381 0.00 0.00 0.00 2.10
86 87 2.561419 CTCCCTCCGTCACAGTTTAGAA 59.439 50.000 0.00 0.00 0.00 2.10
87 88 2.561419 TCCCTCCGTCACAGTTTAGAAG 59.439 50.000 0.00 0.00 0.00 2.85
88 89 2.353803 CCCTCCGTCACAGTTTAGAAGG 60.354 54.545 0.00 0.00 35.14 3.46
89 90 2.338500 CTCCGTCACAGTTTAGAAGGC 58.662 52.381 0.00 0.00 34.05 4.35
90 91 1.068474 CCGTCACAGTTTAGAAGGCG 58.932 55.000 0.00 0.00 0.00 5.52
91 92 0.438830 CGTCACAGTTTAGAAGGCGC 59.561 55.000 0.00 0.00 0.00 6.53
92 93 0.438830 GTCACAGTTTAGAAGGCGCG 59.561 55.000 0.00 0.00 0.00 6.86
93 94 1.132640 CACAGTTTAGAAGGCGCGC 59.867 57.895 25.94 25.94 0.00 6.86
94 95 1.004918 ACAGTTTAGAAGGCGCGCT 60.005 52.632 32.29 12.85 0.00 5.92
95 96 0.602905 ACAGTTTAGAAGGCGCGCTT 60.603 50.000 32.29 23.01 0.00 4.68
96 97 0.179215 CAGTTTAGAAGGCGCGCTTG 60.179 55.000 32.29 4.59 0.00 4.01
97 98 0.320421 AGTTTAGAAGGCGCGCTTGA 60.320 50.000 32.29 10.01 0.00 3.02
98 99 0.515564 GTTTAGAAGGCGCGCTTGAA 59.484 50.000 32.29 15.78 0.00 2.69
99 100 1.069500 GTTTAGAAGGCGCGCTTGAAA 60.069 47.619 32.29 20.57 0.00 2.69
100 101 1.231221 TTAGAAGGCGCGCTTGAAAA 58.769 45.000 32.29 16.96 0.00 2.29
101 102 1.448985 TAGAAGGCGCGCTTGAAAAT 58.551 45.000 32.29 7.73 0.00 1.82
102 103 0.598065 AGAAGGCGCGCTTGAAAATT 59.402 45.000 32.29 6.83 0.00 1.82
103 104 1.000274 AGAAGGCGCGCTTGAAAATTT 60.000 42.857 32.29 5.93 0.00 1.82
104 105 1.792367 GAAGGCGCGCTTGAAAATTTT 59.208 42.857 32.29 5.03 0.00 1.82
105 106 1.418373 AGGCGCGCTTGAAAATTTTC 58.582 45.000 32.29 21.60 37.69 2.29
106 107 1.000274 AGGCGCGCTTGAAAATTTTCT 60.000 42.857 32.29 11.82 38.02 2.52
107 108 1.124839 GGCGCGCTTGAAAATTTTCTG 59.875 47.619 32.29 20.51 38.02 3.02
108 109 1.124839 GCGCGCTTGAAAATTTTCTGG 59.875 47.619 26.67 20.15 38.02 3.86
109 110 1.720852 CGCGCTTGAAAATTTTCTGGG 59.279 47.619 26.73 24.81 38.02 4.45
110 111 2.606795 CGCGCTTGAAAATTTTCTGGGA 60.607 45.455 26.73 8.28 38.02 4.37
111 112 2.731451 GCGCTTGAAAATTTTCTGGGAC 59.269 45.455 26.73 18.56 38.02 4.46
112 113 3.317150 CGCTTGAAAATTTTCTGGGACC 58.683 45.455 26.73 11.48 38.02 4.46
113 114 3.005791 CGCTTGAAAATTTTCTGGGACCT 59.994 43.478 26.73 0.00 38.02 3.85
114 115 4.217550 CGCTTGAAAATTTTCTGGGACCTA 59.782 41.667 26.73 5.96 38.02 3.08
115 116 5.619981 CGCTTGAAAATTTTCTGGGACCTAG 60.620 44.000 26.73 10.36 38.02 3.02
116 117 5.336770 GCTTGAAAATTTTCTGGGACCTAGG 60.337 44.000 26.73 7.41 38.02 3.02
117 118 4.086457 TGAAAATTTTCTGGGACCTAGGC 58.914 43.478 26.73 1.17 38.02 3.93
118 119 2.420058 AATTTTCTGGGACCTAGGCG 57.580 50.000 9.30 0.00 0.00 5.52
119 120 0.546598 ATTTTCTGGGACCTAGGCGG 59.453 55.000 9.30 0.00 39.35 6.13
131 132 3.584294 ACCTAGGCGGTTATCTATTGGT 58.416 45.455 9.30 0.00 46.37 3.67
132 133 3.971971 ACCTAGGCGGTTATCTATTGGTT 59.028 43.478 9.30 0.00 46.37 3.67
133 134 4.202326 ACCTAGGCGGTTATCTATTGGTTG 60.202 45.833 9.30 0.00 46.37 3.77
134 135 3.926058 AGGCGGTTATCTATTGGTTGT 57.074 42.857 0.00 0.00 0.00 3.32
135 136 3.541632 AGGCGGTTATCTATTGGTTGTG 58.458 45.455 0.00 0.00 0.00 3.33
136 137 3.199071 AGGCGGTTATCTATTGGTTGTGA 59.801 43.478 0.00 0.00 0.00 3.58
137 138 3.560068 GGCGGTTATCTATTGGTTGTGAG 59.440 47.826 0.00 0.00 0.00 3.51
138 139 4.439057 GCGGTTATCTATTGGTTGTGAGA 58.561 43.478 0.00 0.00 0.00 3.27
139 140 5.057149 GCGGTTATCTATTGGTTGTGAGAT 58.943 41.667 0.00 0.00 33.32 2.75
140 141 5.050091 GCGGTTATCTATTGGTTGTGAGATG 60.050 44.000 0.00 0.00 31.25 2.90
141 142 5.466728 CGGTTATCTATTGGTTGTGAGATGG 59.533 44.000 0.00 0.00 31.25 3.51
142 143 5.765182 GGTTATCTATTGGTTGTGAGATGGG 59.235 44.000 0.00 0.00 31.25 4.00
143 144 3.281727 TCTATTGGTTGTGAGATGGGC 57.718 47.619 0.00 0.00 0.00 5.36
144 145 2.846206 TCTATTGGTTGTGAGATGGGCT 59.154 45.455 0.00 0.00 0.00 5.19
145 146 4.037222 TCTATTGGTTGTGAGATGGGCTA 58.963 43.478 0.00 0.00 0.00 3.93
146 147 3.737559 ATTGGTTGTGAGATGGGCTAA 57.262 42.857 0.00 0.00 0.00 3.09
147 148 3.517296 TTGGTTGTGAGATGGGCTAAA 57.483 42.857 0.00 0.00 0.00 1.85
148 149 3.517296 TGGTTGTGAGATGGGCTAAAA 57.483 42.857 0.00 0.00 0.00 1.52
149 150 3.838565 TGGTTGTGAGATGGGCTAAAAA 58.161 40.909 0.00 0.00 0.00 1.94
167 168 2.549633 AAATAGCATTCACACTGCGC 57.450 45.000 0.00 0.00 44.38 6.09
168 169 1.452110 AATAGCATTCACACTGCGCA 58.548 45.000 10.98 10.98 44.38 6.09
169 170 1.671979 ATAGCATTCACACTGCGCAT 58.328 45.000 12.24 0.00 44.38 4.73
170 171 0.728542 TAGCATTCACACTGCGCATG 59.271 50.000 12.24 14.27 44.38 4.06
171 172 2.156446 GCATTCACACTGCGCATGC 61.156 57.895 12.24 12.96 43.20 4.06
211 212 9.874205 ACTATCGGAGTACTAATTAGCTACTAG 57.126 37.037 19.17 16.08 36.27 2.57
214 215 9.790344 ATCGGAGTACTAATTAGCTACTAGAAA 57.210 33.333 19.17 11.04 0.00 2.52
215 216 9.790344 TCGGAGTACTAATTAGCTACTAGAAAT 57.210 33.333 19.17 0.00 0.00 2.17
227 228 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
228 229 5.340667 GCTACTAGAAATAAATGCAATGCGC 59.659 40.000 0.00 0.00 42.89 6.09
229 230 4.610945 ACTAGAAATAAATGCAATGCGCC 58.389 39.130 4.18 0.00 41.33 6.53
230 231 3.806625 AGAAATAAATGCAATGCGCCT 57.193 38.095 4.18 0.00 41.33 5.52
231 232 4.127566 AGAAATAAATGCAATGCGCCTT 57.872 36.364 4.18 0.00 41.33 4.35
232 233 5.261209 AGAAATAAATGCAATGCGCCTTA 57.739 34.783 4.18 0.00 41.33 2.69
233 234 5.659463 AGAAATAAATGCAATGCGCCTTAA 58.341 33.333 4.18 0.00 41.33 1.85
234 235 6.105333 AGAAATAAATGCAATGCGCCTTAAA 58.895 32.000 4.18 0.00 41.33 1.52
235 236 5.717038 AATAAATGCAATGCGCCTTAAAC 57.283 34.783 4.18 0.00 41.33 2.01
236 237 2.008752 AATGCAATGCGCCTTAAACC 57.991 45.000 4.18 0.00 41.33 3.27
237 238 1.185315 ATGCAATGCGCCTTAAACCT 58.815 45.000 4.18 0.00 41.33 3.50
238 239 0.965439 TGCAATGCGCCTTAAACCTT 59.035 45.000 4.18 0.00 41.33 3.50
239 240 1.336702 TGCAATGCGCCTTAAACCTTG 60.337 47.619 4.18 0.00 41.33 3.61
240 241 1.336795 GCAATGCGCCTTAAACCTTGT 60.337 47.619 4.18 0.00 32.94 3.16
241 242 2.595386 CAATGCGCCTTAAACCTTGTC 58.405 47.619 4.18 0.00 0.00 3.18
242 243 2.200373 ATGCGCCTTAAACCTTGTCT 57.800 45.000 4.18 0.00 0.00 3.41
243 244 2.843401 TGCGCCTTAAACCTTGTCTA 57.157 45.000 4.18 0.00 0.00 2.59
244 245 3.343941 TGCGCCTTAAACCTTGTCTAT 57.656 42.857 4.18 0.00 0.00 1.98
245 246 3.681593 TGCGCCTTAAACCTTGTCTATT 58.318 40.909 4.18 0.00 0.00 1.73
246 247 3.438781 TGCGCCTTAAACCTTGTCTATTG 59.561 43.478 4.18 0.00 0.00 1.90
247 248 3.439129 GCGCCTTAAACCTTGTCTATTGT 59.561 43.478 0.00 0.00 0.00 2.71
248 249 4.632688 GCGCCTTAAACCTTGTCTATTGTA 59.367 41.667 0.00 0.00 0.00 2.41
249 250 5.122711 GCGCCTTAAACCTTGTCTATTGTAA 59.877 40.000 0.00 0.00 0.00 2.41
250 251 6.348704 GCGCCTTAAACCTTGTCTATTGTAAA 60.349 38.462 0.00 0.00 0.00 2.01
251 252 7.586747 CGCCTTAAACCTTGTCTATTGTAAAA 58.413 34.615 0.00 0.00 0.00 1.52
252 253 8.077386 CGCCTTAAACCTTGTCTATTGTAAAAA 58.923 33.333 0.00 0.00 0.00 1.94
253 254 9.188588 GCCTTAAACCTTGTCTATTGTAAAAAC 57.811 33.333 0.00 0.00 0.00 2.43
254 255 9.389570 CCTTAAACCTTGTCTATTGTAAAAACG 57.610 33.333 0.00 0.00 0.00 3.60
255 256 8.785468 TTAAACCTTGTCTATTGTAAAAACGC 57.215 30.769 0.00 0.00 0.00 4.84
256 257 6.380095 AACCTTGTCTATTGTAAAAACGCA 57.620 33.333 0.00 0.00 0.00 5.24
257 258 5.754778 ACCTTGTCTATTGTAAAAACGCAC 58.245 37.500 0.00 0.00 0.00 5.34
258 259 4.843984 CCTTGTCTATTGTAAAAACGCACG 59.156 41.667 0.00 0.00 0.00 5.34
259 260 3.801293 TGTCTATTGTAAAAACGCACGC 58.199 40.909 0.00 0.00 0.00 5.34
260 261 3.247886 TGTCTATTGTAAAAACGCACGCA 59.752 39.130 0.00 0.00 0.00 5.24
261 262 4.212911 GTCTATTGTAAAAACGCACGCAA 58.787 39.130 0.00 0.00 0.00 4.85
262 263 4.671516 GTCTATTGTAAAAACGCACGCAAA 59.328 37.500 0.00 0.00 0.00 3.68
263 264 5.341196 GTCTATTGTAAAAACGCACGCAAAT 59.659 36.000 0.00 0.00 0.00 2.32
264 265 5.915758 TCTATTGTAAAAACGCACGCAAATT 59.084 32.000 0.00 0.00 0.00 1.82
265 266 4.842139 TTGTAAAAACGCACGCAAATTT 57.158 31.818 0.00 0.00 0.00 1.82
266 267 5.944049 TTGTAAAAACGCACGCAAATTTA 57.056 30.435 0.00 0.00 0.00 1.40
267 268 5.944049 TGTAAAAACGCACGCAAATTTAA 57.056 30.435 0.00 0.00 0.00 1.52
268 269 5.715264 TGTAAAAACGCACGCAAATTTAAC 58.285 33.333 0.00 0.00 0.00 2.01
269 270 5.515626 TGTAAAAACGCACGCAAATTTAACT 59.484 32.000 0.00 0.00 0.00 2.24
270 271 6.690098 TGTAAAAACGCACGCAAATTTAACTA 59.310 30.769 0.00 0.00 0.00 2.24
271 272 6.757026 AAAAACGCACGCAAATTTAACTAT 57.243 29.167 0.00 0.00 0.00 2.12
272 273 5.739237 AAACGCACGCAAATTTAACTATG 57.261 34.783 0.00 0.00 0.00 2.23
273 274 3.168193 ACGCACGCAAATTTAACTATGC 58.832 40.909 0.00 0.00 35.49 3.14
274 275 2.529894 CGCACGCAAATTTAACTATGCC 59.470 45.455 0.00 0.00 35.41 4.40
275 276 3.730662 CGCACGCAAATTTAACTATGCCT 60.731 43.478 0.00 0.00 35.41 4.75
276 277 4.173256 GCACGCAAATTTAACTATGCCTT 58.827 39.130 0.00 0.00 35.41 4.35
277 278 4.265320 GCACGCAAATTTAACTATGCCTTC 59.735 41.667 0.00 0.00 35.41 3.46
278 279 5.640732 CACGCAAATTTAACTATGCCTTCT 58.359 37.500 0.00 0.00 35.41 2.85
279 280 6.676943 GCACGCAAATTTAACTATGCCTTCTA 60.677 38.462 0.00 0.00 35.41 2.10
280 281 7.247728 CACGCAAATTTAACTATGCCTTCTAA 58.752 34.615 0.00 0.00 35.41 2.10
281 282 7.753132 CACGCAAATTTAACTATGCCTTCTAAA 59.247 33.333 0.00 0.00 35.41 1.85
282 283 7.753580 ACGCAAATTTAACTATGCCTTCTAAAC 59.246 33.333 0.00 0.00 35.41 2.01
283 284 7.968405 CGCAAATTTAACTATGCCTTCTAAACT 59.032 33.333 0.00 0.00 35.41 2.66
284 285 9.076596 GCAAATTTAACTATGCCTTCTAAACTG 57.923 33.333 0.00 0.00 32.73 3.16
287 288 9.515226 AATTTAACTATGCCTTCTAAACTGTGA 57.485 29.630 0.00 0.00 0.00 3.58
288 289 7.900782 TTAACTATGCCTTCTAAACTGTGAC 57.099 36.000 0.00 0.00 0.00 3.67
289 290 5.483685 ACTATGCCTTCTAAACTGTGACA 57.516 39.130 0.00 0.00 0.00 3.58
290 291 5.482908 ACTATGCCTTCTAAACTGTGACAG 58.517 41.667 11.70 11.70 37.52 3.51
291 292 4.623932 ATGCCTTCTAAACTGTGACAGA 57.376 40.909 20.97 0.00 35.18 3.41
292 293 3.995199 TGCCTTCTAAACTGTGACAGAG 58.005 45.455 20.97 6.52 35.18 3.35
293 294 3.244215 TGCCTTCTAAACTGTGACAGAGG 60.244 47.826 20.97 14.87 35.18 3.69
294 295 3.866449 GCCTTCTAAACTGTGACAGAGGG 60.866 52.174 20.97 7.56 37.34 4.30
295 296 3.578716 CCTTCTAAACTGTGACAGAGGGA 59.421 47.826 20.97 8.65 36.62 4.20
296 297 4.322349 CCTTCTAAACTGTGACAGAGGGAG 60.322 50.000 20.97 10.38 36.62 4.30
297 298 3.845860 TCTAAACTGTGACAGAGGGAGT 58.154 45.455 20.97 0.00 35.18 3.85
298 299 4.994282 TCTAAACTGTGACAGAGGGAGTA 58.006 43.478 20.97 1.25 35.18 2.59
299 300 4.765856 TCTAAACTGTGACAGAGGGAGTAC 59.234 45.833 20.97 0.00 35.18 2.73
300 301 1.926108 ACTGTGACAGAGGGAGTACC 58.074 55.000 20.97 0.00 35.54 3.34
313 314 4.660789 GGGAGTACCTAATTAGCGACAA 57.339 45.455 6.99 0.00 35.85 3.18
314 315 5.211174 GGGAGTACCTAATTAGCGACAAT 57.789 43.478 6.99 0.00 35.85 2.71
315 316 5.608449 GGGAGTACCTAATTAGCGACAATT 58.392 41.667 6.99 0.00 35.85 2.32
316 317 6.752168 GGGAGTACCTAATTAGCGACAATTA 58.248 40.000 6.99 0.00 35.85 1.40
317 318 7.212274 GGGAGTACCTAATTAGCGACAATTAA 58.788 38.462 6.99 0.00 31.67 1.40
318 319 7.876582 GGGAGTACCTAATTAGCGACAATTAAT 59.123 37.037 6.99 0.00 31.67 1.40
319 320 9.918630 GGAGTACCTAATTAGCGACAATTAATA 57.081 33.333 6.99 0.00 31.67 0.98
324 325 9.569122 ACCTAATTAGCGACAATTAATATGGTT 57.431 29.630 6.99 0.00 31.67 3.67
328 329 7.867305 TTAGCGACAATTAATATGGTTTGGA 57.133 32.000 0.00 0.00 0.00 3.53
329 330 6.767524 AGCGACAATTAATATGGTTTGGAA 57.232 33.333 0.00 0.00 0.00 3.53
330 331 6.795399 AGCGACAATTAATATGGTTTGGAAG 58.205 36.000 0.00 0.00 0.00 3.46
331 332 5.977129 GCGACAATTAATATGGTTTGGAAGG 59.023 40.000 0.00 0.00 0.00 3.46
332 333 6.183360 GCGACAATTAATATGGTTTGGAAGGA 60.183 38.462 0.00 0.00 0.00 3.36
333 334 7.417612 CGACAATTAATATGGTTTGGAAGGAG 58.582 38.462 0.00 0.00 0.00 3.69
334 335 7.067008 CGACAATTAATATGGTTTGGAAGGAGT 59.933 37.037 0.00 0.00 0.00 3.85
335 336 9.403583 GACAATTAATATGGTTTGGAAGGAGTA 57.596 33.333 0.00 0.00 0.00 2.59
336 337 9.936329 ACAATTAATATGGTTTGGAAGGAGTAT 57.064 29.630 0.00 0.00 0.00 2.12
391 392 6.569179 ACAATATCAAACACGCCTTAGTTT 57.431 33.333 0.00 0.00 38.40 2.66
393 394 8.101654 ACAATATCAAACACGCCTTAGTTTTA 57.898 30.769 0.00 0.00 35.90 1.52
464 469 9.585099 TTGAAATATATTGCAGAACATTTCCAC 57.415 29.630 6.24 2.27 33.49 4.02
465 470 7.914871 TGAAATATATTGCAGAACATTTCCACG 59.085 33.333 1.62 0.00 33.49 4.94
470 475 2.884012 TGCAGAACATTTCCACGACAAT 59.116 40.909 0.00 0.00 0.00 2.71
484 489 1.567504 GACAATCGTGTGGGGTATCG 58.432 55.000 0.00 0.00 38.41 2.92
496 510 3.101437 TGGGGTATCGTCTAGCAGAAAA 58.899 45.455 0.00 0.00 0.00 2.29
538 639 1.379044 GGTCCAGCATCCCAACCAG 60.379 63.158 0.00 0.00 0.00 4.00
540 641 0.257039 GTCCAGCATCCCAACCAGAT 59.743 55.000 0.00 0.00 0.00 2.90
564 665 1.172175 CCCTGCCTTCTCTCTTTTGC 58.828 55.000 0.00 0.00 0.00 3.68
593 707 1.067364 CATGCACAGTGTGAGCCAAAA 59.933 47.619 27.37 2.99 35.23 2.44
680 2627 2.598565 ACTTCACTCCACTCTGCAGTA 58.401 47.619 14.67 0.00 0.00 2.74
683 2630 1.203063 TCACTCCACTCTGCAGTACCT 60.203 52.381 14.67 0.00 0.00 3.08
693 2640 3.313874 CAGTACCTGCCCTCCTGG 58.686 66.667 0.00 0.00 38.43 4.45
720 2671 0.604780 TTGCTGACTGCTCCTTGCTC 60.605 55.000 5.87 0.00 43.37 4.26
725 2676 2.694628 CTGACTGCTCCTTGCTCTAGAT 59.305 50.000 0.00 0.00 43.37 1.98
733 2684 4.630111 CTCCTTGCTCTAGATGAATGGAC 58.370 47.826 0.00 0.00 0.00 4.02
771 2763 8.823818 GGGTACATGTACACTTGTTGATAATAC 58.176 37.037 31.52 12.24 36.56 1.89
807 2805 1.138859 CAGGACCATCTGCCGTCAATA 59.861 52.381 0.00 0.00 0.00 1.90
848 2846 1.110442 CCAGCAGAGTGAGTAGAGGG 58.890 60.000 0.00 0.00 0.00 4.30
855 2853 4.087182 CAGAGTGAGTAGAGGGGTTGTTA 58.913 47.826 0.00 0.00 0.00 2.41
1006 3015 3.751893 GCCAGGCCATCACCATAAACTAT 60.752 47.826 5.01 0.00 0.00 2.12
1060 3085 1.343580 GCCTCCTCCTCCTCCTTAACT 60.344 57.143 0.00 0.00 0.00 2.24
1148 3173 6.767902 ACCAACATCGCCATATAATATCATCC 59.232 38.462 0.00 0.00 0.00 3.51
1170 3195 4.565236 CCAGCTTCCTGATCAAAGAAGACT 60.565 45.833 27.50 21.89 41.77 3.24
1183 3208 4.882842 AAGAAGACTTGAGAGAGGGAAC 57.117 45.455 0.00 0.00 34.80 3.62
1189 3214 2.966516 ACTTGAGAGAGGGAACGAAACT 59.033 45.455 0.00 0.00 0.00 2.66
1201 3226 1.675552 ACGAAACTGAGGGTTGGTTG 58.324 50.000 0.00 0.00 38.29 3.77
1290 3315 4.914983 AGGCATTCATCTTCTCTGAAACA 58.085 39.130 0.00 0.00 36.30 2.83
1299 3324 7.679783 TCATCTTCTCTGAAACAATCAAGGTA 58.320 34.615 0.00 0.00 37.67 3.08
1300 3325 8.324306 TCATCTTCTCTGAAACAATCAAGGTAT 58.676 33.333 0.00 0.00 37.67 2.73
1326 3351 9.747898 TGTTTATCCTTCAAATTATACCTGTGT 57.252 29.630 0.00 0.00 0.00 3.72
1348 3375 5.548056 TGTTCTTCTCTTCCCCTACAATCTT 59.452 40.000 0.00 0.00 0.00 2.40
1364 3391 2.327325 TCTTAGGACTCTGCTTGGGT 57.673 50.000 0.00 0.00 0.00 4.51
1373 3400 3.074412 ACTCTGCTTGGGTATTTTCACG 58.926 45.455 0.00 0.00 0.00 4.35
1477 3504 1.079127 CTACACACAGGAAGGCGGG 60.079 63.158 0.00 0.00 0.00 6.13
1527 3558 0.395311 CCTCCTGCATGCTCCACAAT 60.395 55.000 20.33 0.00 0.00 2.71
1536 3567 4.758165 TGCATGCTCCACAATATCATGTAG 59.242 41.667 20.33 0.00 37.44 2.74
1563 3641 1.063174 CTAATCAGCAAGCTTCCACGC 59.937 52.381 0.00 0.00 0.00 5.34
1564 3642 0.890542 AATCAGCAAGCTTCCACGCA 60.891 50.000 8.96 0.00 0.00 5.24
1565 3643 0.679002 ATCAGCAAGCTTCCACGCAT 60.679 50.000 8.96 0.00 0.00 4.73
1566 3644 1.136147 CAGCAAGCTTCCACGCATC 59.864 57.895 8.96 0.00 0.00 3.91
1567 3645 1.002868 AGCAAGCTTCCACGCATCT 60.003 52.632 8.96 0.00 0.00 2.90
1568 3646 1.136147 GCAAGCTTCCACGCATCTG 59.864 57.895 0.00 0.00 0.00 2.90
1569 3647 1.136147 CAAGCTTCCACGCATCTGC 59.864 57.895 0.00 0.00 37.78 4.26
1587 3665 3.498676 CGACTGGTTCGCTCTTTCT 57.501 52.632 0.00 0.00 41.87 2.52
1588 3666 1.784525 CGACTGGTTCGCTCTTTCTT 58.215 50.000 0.00 0.00 41.87 2.52
1589 3667 2.135933 CGACTGGTTCGCTCTTTCTTT 58.864 47.619 0.00 0.00 41.87 2.52
1590 3668 2.544267 CGACTGGTTCGCTCTTTCTTTT 59.456 45.455 0.00 0.00 41.87 2.27
1591 3669 3.002348 CGACTGGTTCGCTCTTTCTTTTT 59.998 43.478 0.00 0.00 41.87 1.94
1624 3702 0.461870 TATGCGCACAGGGTGATGAC 60.462 55.000 14.90 0.00 35.23 3.06
1640 3718 4.080863 GTGATGACCAACCTCAAGGAGTAT 60.081 45.833 2.30 0.00 38.94 2.12
1664 3742 1.671379 GAAGGCCCTCGTCAACACC 60.671 63.158 0.00 0.00 0.00 4.16
1787 3865 2.488153 GGTTTCTGTTGGTGCATCCTAC 59.512 50.000 11.07 11.07 41.19 3.18
1955 4045 0.899720 TCTTACCAGGTAAGTGGCCG 59.100 55.000 30.75 12.20 43.95 6.13
1977 4067 4.693566 CGTAAGATACCTTTGTGCCTTTCA 59.306 41.667 0.00 0.00 43.02 2.69
1989 4079 2.113860 GCCTTTCATGTGGCTCTGTA 57.886 50.000 15.95 0.00 45.26 2.74
2040 4130 4.453480 AGAAAAGTGGATGAGGGTCAAA 57.547 40.909 0.00 0.00 0.00 2.69
2062 4152 3.328931 ACTTGGGTGAGACATCTTGATGT 59.671 43.478 15.16 15.16 37.50 3.06
2075 4169 6.169094 ACATCTTGATGTCTTACTTGAGTGG 58.831 40.000 10.15 0.00 0.00 4.00
2092 4186 0.322816 TGGTTTCAGCAGGAGATGGC 60.323 55.000 0.00 0.00 0.00 4.40
2202 4297 5.901276 AGGATCTGCAATCCATAAAAATGGT 59.099 36.000 22.09 3.37 42.28 3.55
2216 4311 5.419239 AAAAATGGTGGACATGTATTGGG 57.581 39.130 0.00 0.00 40.44 4.12
2283 4385 0.179197 CAGCATCTGCAGCTCAAACG 60.179 55.000 9.47 0.00 45.16 3.60
2310 4412 3.805971 GCAAAGACAAGCAAGCTTCATTT 59.194 39.130 3.97 3.85 33.42 2.32
2470 4574 3.120385 CACAGCATCCGCGCTTCA 61.120 61.111 5.56 0.00 45.49 3.02
2502 4606 4.165950 TCTGATACTGCAATACCCACCAAT 59.834 41.667 0.00 0.00 0.00 3.16
2517 4621 6.075984 ACCCACCAATAGAGGTATAGTAGTG 58.924 44.000 0.00 0.00 40.77 2.74
2559 4667 1.679680 CCGACGGTGGTATATGAGTGT 59.320 52.381 5.48 0.00 0.00 3.55
2562 4670 1.828595 ACGGTGGTATATGAGTGTGCA 59.171 47.619 0.00 0.00 0.00 4.57
2597 4708 6.045072 TCCGTGAAATGGTTACAGAGTTAT 57.955 37.500 0.00 0.00 45.66 1.89
2656 4772 6.045072 ACTAATGTTCCGTGGTCAATCTTA 57.955 37.500 0.00 0.00 0.00 2.10
2661 4777 4.698304 TGTTCCGTGGTCAATCTTATTTCC 59.302 41.667 0.00 0.00 0.00 3.13
2765 4881 3.567164 CCTTGCTCAAGACATCAAGTGTT 59.433 43.478 10.94 0.00 42.36 3.32
2771 4887 4.641396 TCAAGACATCAAGTGTTAGGGTG 58.359 43.478 0.00 0.00 42.36 4.61
2815 4931 7.770366 TGTGAACACAAGACTACTAGGAATA 57.230 36.000 5.11 0.00 38.56 1.75
2827 4943 9.824216 AGACTACTAGGAATAATATGCCTTACA 57.176 33.333 4.87 0.00 33.28 2.41
2845 4961 7.121907 TGCCTTACAAATGCTGACACAATATTA 59.878 33.333 0.00 0.00 0.00 0.98
2868 4984 2.148768 TGTTGCTGAAGATGCAGACAG 58.851 47.619 0.00 0.08 41.71 3.51
2891 5007 3.920231 TCAGATCCCAAGAGATTGGTG 57.080 47.619 6.29 0.00 40.46 4.17
2940 5056 4.773674 ACAATGATGATTCCAAGGAAAGCA 59.226 37.500 5.52 7.78 37.69 3.91
3053 5169 6.548321 TCCTTAGGCTGTAAAGGATGAAAAA 58.452 36.000 12.26 0.00 44.96 1.94
3249 5367 1.234821 GCTGGATGACGTTGTTGGAA 58.765 50.000 0.00 0.00 0.00 3.53
3322 5440 5.008118 TCACGTTTTCATGTTACATCAGCAA 59.992 36.000 0.00 0.00 0.00 3.91
3323 5441 5.115472 CACGTTTTCATGTTACATCAGCAAC 59.885 40.000 0.00 0.00 0.00 4.17
3329 5447 5.941733 TCATGTTACATCAGCAACACATTC 58.058 37.500 0.00 0.00 37.47 2.67
3330 5448 5.472820 TCATGTTACATCAGCAACACATTCA 59.527 36.000 0.00 0.00 37.47 2.57
3332 5450 5.941733 TGTTACATCAGCAACACATTCATC 58.058 37.500 0.00 0.00 29.93 2.92
3333 5451 5.706833 TGTTACATCAGCAACACATTCATCT 59.293 36.000 0.00 0.00 29.93 2.90
3334 5452 6.207221 TGTTACATCAGCAACACATTCATCTT 59.793 34.615 0.00 0.00 29.93 2.40
3650 5889 6.687081 TCGACTGAAATTTGTAAAACCTGT 57.313 33.333 0.00 0.00 0.00 4.00
3651 5890 7.090953 TCGACTGAAATTTGTAAAACCTGTT 57.909 32.000 0.00 0.00 0.00 3.16
3652 5891 7.540299 TCGACTGAAATTTGTAAAACCTGTTT 58.460 30.769 0.00 0.00 0.00 2.83
3793 6047 5.017431 TCCCTCCCATACTGCTAGGTATTAT 59.983 44.000 0.00 0.00 30.90 1.28
3900 6155 5.660460 GATTCTTGTGTTCCTGGTTTTTGT 58.340 37.500 0.00 0.00 0.00 2.83
3971 6565 2.103941 GCCCTCAGACAAGGAAGATAGG 59.896 54.545 0.00 0.00 38.87 2.57
3985 6579 4.441217 GGAAGATAGGTTACACGAAGGGTC 60.441 50.000 0.00 0.00 0.00 4.46
4217 7111 6.433847 TTCCATCTTAACTCAGACTCCAAA 57.566 37.500 0.00 0.00 0.00 3.28
4311 7205 0.890996 CCCACTGCAACACTCTTCCC 60.891 60.000 0.00 0.00 0.00 3.97
4329 7223 1.560923 CCCGCGTTCACATCTCTAAG 58.439 55.000 4.92 0.00 0.00 2.18
4361 7255 0.445436 GGTGATTCAGCTGCTGTTCG 59.555 55.000 27.24 3.89 32.61 3.95
4398 7292 5.597806 ACATGTCTTCTACAAACGTTCTGA 58.402 37.500 0.00 0.00 42.70 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.945904 GGATCGGAAGGAGTAAGATAATAAAAT 57.054 33.333 0.00 0.00 0.00 1.82
5 6 8.930527 TGGATCGGAAGGAGTAAGATAATAAAA 58.069 33.333 0.00 0.00 0.00 1.52
6 7 8.486942 TGGATCGGAAGGAGTAAGATAATAAA 57.513 34.615 0.00 0.00 0.00 1.40
7 8 8.666129 ATGGATCGGAAGGAGTAAGATAATAA 57.334 34.615 0.00 0.00 0.00 1.40
8 9 9.937876 ATATGGATCGGAAGGAGTAAGATAATA 57.062 33.333 0.00 0.00 0.00 0.98
9 10 8.846423 ATATGGATCGGAAGGAGTAAGATAAT 57.154 34.615 0.00 0.00 0.00 1.28
10 11 8.666129 AATATGGATCGGAAGGAGTAAGATAA 57.334 34.615 0.00 0.00 0.00 1.75
11 12 9.763837 TTAATATGGATCGGAAGGAGTAAGATA 57.236 33.333 0.00 0.00 0.00 1.98
12 13 8.666129 TTAATATGGATCGGAAGGAGTAAGAT 57.334 34.615 0.00 0.00 0.00 2.40
13 14 8.666129 ATTAATATGGATCGGAAGGAGTAAGA 57.334 34.615 0.00 0.00 0.00 2.10
14 15 9.155975 CAATTAATATGGATCGGAAGGAGTAAG 57.844 37.037 0.00 0.00 0.00 2.34
15 16 8.656806 ACAATTAATATGGATCGGAAGGAGTAA 58.343 33.333 0.00 0.00 0.00 2.24
16 17 8.202461 ACAATTAATATGGATCGGAAGGAGTA 57.798 34.615 0.00 0.00 0.00 2.59
17 18 7.079451 ACAATTAATATGGATCGGAAGGAGT 57.921 36.000 0.00 0.00 0.00 3.85
18 19 6.595716 GGACAATTAATATGGATCGGAAGGAG 59.404 42.308 0.00 0.00 0.00 3.69
19 20 6.472887 GGACAATTAATATGGATCGGAAGGA 58.527 40.000 0.00 0.00 0.00 3.36
20 21 5.648092 GGGACAATTAATATGGATCGGAAGG 59.352 44.000 0.00 0.00 0.00 3.46
21 22 6.476378 AGGGACAATTAATATGGATCGGAAG 58.524 40.000 0.00 0.00 0.00 3.46
22 23 6.448369 AGGGACAATTAATATGGATCGGAA 57.552 37.500 0.00 0.00 0.00 4.30
23 24 7.749377 ATAGGGACAATTAATATGGATCGGA 57.251 36.000 0.00 0.00 0.00 4.55
24 25 8.807948 AAATAGGGACAATTAATATGGATCGG 57.192 34.615 0.00 0.00 0.00 4.18
51 52 9.939802 GTGACGGAGGGAGTATAAAATTATATT 57.060 33.333 0.00 0.00 0.00 1.28
52 53 9.096823 TGTGACGGAGGGAGTATAAAATTATAT 57.903 33.333 0.00 0.00 0.00 0.86
53 54 8.481492 TGTGACGGAGGGAGTATAAAATTATA 57.519 34.615 0.00 0.00 0.00 0.98
54 55 7.070821 ACTGTGACGGAGGGAGTATAAAATTAT 59.929 37.037 0.00 0.00 0.00 1.28
55 56 6.381994 ACTGTGACGGAGGGAGTATAAAATTA 59.618 38.462 0.00 0.00 0.00 1.40
56 57 5.189145 ACTGTGACGGAGGGAGTATAAAATT 59.811 40.000 0.00 0.00 0.00 1.82
57 58 4.715297 ACTGTGACGGAGGGAGTATAAAAT 59.285 41.667 0.00 0.00 0.00 1.82
58 59 4.091549 ACTGTGACGGAGGGAGTATAAAA 58.908 43.478 0.00 0.00 0.00 1.52
59 60 3.705051 ACTGTGACGGAGGGAGTATAAA 58.295 45.455 0.00 0.00 0.00 1.40
60 61 3.377253 ACTGTGACGGAGGGAGTATAA 57.623 47.619 0.00 0.00 0.00 0.98
61 62 3.377253 AACTGTGACGGAGGGAGTATA 57.623 47.619 0.00 0.00 0.00 1.47
62 63 2.233305 AACTGTGACGGAGGGAGTAT 57.767 50.000 0.00 0.00 0.00 2.12
63 64 2.005370 AAACTGTGACGGAGGGAGTA 57.995 50.000 0.00 0.00 0.00 2.59
64 65 1.893801 CTAAACTGTGACGGAGGGAGT 59.106 52.381 0.00 0.00 0.00 3.85
65 66 2.168496 TCTAAACTGTGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
66 67 2.297698 TCTAAACTGTGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
67 68 2.353803 CCTTCTAAACTGTGACGGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
68 69 2.931320 GCCTTCTAAACTGTGACGGAGG 60.931 54.545 0.00 0.00 0.00 4.30
69 70 2.338500 GCCTTCTAAACTGTGACGGAG 58.662 52.381 0.00 0.00 0.00 4.63
70 71 1.336517 CGCCTTCTAAACTGTGACGGA 60.337 52.381 0.00 0.00 0.00 4.69
71 72 1.068474 CGCCTTCTAAACTGTGACGG 58.932 55.000 0.00 0.00 0.00 4.79
72 73 0.438830 GCGCCTTCTAAACTGTGACG 59.561 55.000 0.00 0.00 0.00 4.35
73 74 0.438830 CGCGCCTTCTAAACTGTGAC 59.561 55.000 0.00 0.00 0.00 3.67
74 75 1.289109 GCGCGCCTTCTAAACTGTGA 61.289 55.000 23.24 0.00 0.00 3.58
75 76 1.132640 GCGCGCCTTCTAAACTGTG 59.867 57.895 23.24 0.00 0.00 3.66
76 77 0.602905 AAGCGCGCCTTCTAAACTGT 60.603 50.000 30.33 0.13 0.00 3.55
77 78 0.179215 CAAGCGCGCCTTCTAAACTG 60.179 55.000 30.33 7.37 0.00 3.16
78 79 0.320421 TCAAGCGCGCCTTCTAAACT 60.320 50.000 30.33 1.73 0.00 2.66
79 80 0.515564 TTCAAGCGCGCCTTCTAAAC 59.484 50.000 30.33 0.00 0.00 2.01
80 81 1.231221 TTTCAAGCGCGCCTTCTAAA 58.769 45.000 30.33 17.92 0.00 1.85
81 82 1.231221 TTTTCAAGCGCGCCTTCTAA 58.769 45.000 30.33 14.41 0.00 2.10
82 83 1.448985 ATTTTCAAGCGCGCCTTCTA 58.551 45.000 30.33 9.84 0.00 2.10
83 84 0.598065 AATTTTCAAGCGCGCCTTCT 59.402 45.000 30.33 5.98 0.00 2.85
84 85 1.418373 AAATTTTCAAGCGCGCCTTC 58.582 45.000 30.33 0.00 0.00 3.46
85 86 1.792367 GAAAATTTTCAAGCGCGCCTT 59.208 42.857 30.33 18.49 37.15 4.35
86 87 1.000274 AGAAAATTTTCAAGCGCGCCT 60.000 42.857 30.33 13.59 39.61 5.52
87 88 1.124839 CAGAAAATTTTCAAGCGCGCC 59.875 47.619 30.33 10.31 39.61 6.53
88 89 1.124839 CCAGAAAATTTTCAAGCGCGC 59.875 47.619 28.00 26.66 39.61 6.86
89 90 1.720852 CCCAGAAAATTTTCAAGCGCG 59.279 47.619 28.00 0.00 39.61 6.86
90 91 2.731451 GTCCCAGAAAATTTTCAAGCGC 59.269 45.455 28.00 13.91 39.61 5.92
91 92 3.005791 AGGTCCCAGAAAATTTTCAAGCG 59.994 43.478 28.00 14.91 39.61 4.68
92 93 4.607293 AGGTCCCAGAAAATTTTCAAGC 57.393 40.909 28.00 19.43 39.61 4.01
93 94 5.336770 GCCTAGGTCCCAGAAAATTTTCAAG 60.337 44.000 28.00 20.29 39.61 3.02
94 95 4.526650 GCCTAGGTCCCAGAAAATTTTCAA 59.473 41.667 28.00 11.22 39.61 2.69
95 96 4.086457 GCCTAGGTCCCAGAAAATTTTCA 58.914 43.478 28.00 8.82 39.61 2.69
96 97 3.128764 CGCCTAGGTCCCAGAAAATTTTC 59.871 47.826 21.00 21.00 37.45 2.29
97 98 3.089284 CGCCTAGGTCCCAGAAAATTTT 58.911 45.455 11.31 2.28 0.00 1.82
98 99 2.620627 CCGCCTAGGTCCCAGAAAATTT 60.621 50.000 11.31 0.00 34.51 1.82
99 100 1.064685 CCGCCTAGGTCCCAGAAAATT 60.065 52.381 11.31 0.00 34.51 1.82
100 101 0.546598 CCGCCTAGGTCCCAGAAAAT 59.453 55.000 11.31 0.00 34.51 1.82
101 102 1.988015 CCGCCTAGGTCCCAGAAAA 59.012 57.895 11.31 0.00 34.51 2.29
102 103 3.721868 CCGCCTAGGTCCCAGAAA 58.278 61.111 11.31 0.00 34.51 2.52
112 113 4.750098 CACAACCAATAGATAACCGCCTAG 59.250 45.833 0.00 0.00 0.00 3.02
113 114 4.406326 TCACAACCAATAGATAACCGCCTA 59.594 41.667 0.00 0.00 0.00 3.93
114 115 3.199071 TCACAACCAATAGATAACCGCCT 59.801 43.478 0.00 0.00 0.00 5.52
115 116 3.537580 TCACAACCAATAGATAACCGCC 58.462 45.455 0.00 0.00 0.00 6.13
116 117 4.439057 TCTCACAACCAATAGATAACCGC 58.561 43.478 0.00 0.00 0.00 5.68
117 118 5.466728 CCATCTCACAACCAATAGATAACCG 59.533 44.000 0.00 0.00 0.00 4.44
118 119 5.765182 CCCATCTCACAACCAATAGATAACC 59.235 44.000 0.00 0.00 0.00 2.85
119 120 5.239525 GCCCATCTCACAACCAATAGATAAC 59.760 44.000 0.00 0.00 0.00 1.89
120 121 5.132648 AGCCCATCTCACAACCAATAGATAA 59.867 40.000 0.00 0.00 0.00 1.75
121 122 4.660303 AGCCCATCTCACAACCAATAGATA 59.340 41.667 0.00 0.00 0.00 1.98
122 123 3.461085 AGCCCATCTCACAACCAATAGAT 59.539 43.478 0.00 0.00 0.00 1.98
123 124 2.846206 AGCCCATCTCACAACCAATAGA 59.154 45.455 0.00 0.00 0.00 1.98
124 125 3.287867 AGCCCATCTCACAACCAATAG 57.712 47.619 0.00 0.00 0.00 1.73
125 126 4.853468 TTAGCCCATCTCACAACCAATA 57.147 40.909 0.00 0.00 0.00 1.90
126 127 3.737559 TTAGCCCATCTCACAACCAAT 57.262 42.857 0.00 0.00 0.00 3.16
127 128 3.517296 TTTAGCCCATCTCACAACCAA 57.483 42.857 0.00 0.00 0.00 3.67
128 129 3.517296 TTTTAGCCCATCTCACAACCA 57.483 42.857 0.00 0.00 0.00 3.67
146 147 3.244976 GCGCAGTGTGAATGCTATTTTT 58.755 40.909 8.15 0.00 41.61 1.94
147 148 2.228582 TGCGCAGTGTGAATGCTATTTT 59.771 40.909 5.66 0.00 41.61 1.82
148 149 1.811965 TGCGCAGTGTGAATGCTATTT 59.188 42.857 5.66 0.00 41.61 1.40
149 150 1.452110 TGCGCAGTGTGAATGCTATT 58.548 45.000 5.66 0.00 41.61 1.73
150 151 1.332686 CATGCGCAGTGTGAATGCTAT 59.667 47.619 18.32 0.00 41.61 2.97
151 152 0.728542 CATGCGCAGTGTGAATGCTA 59.271 50.000 18.32 0.00 41.61 3.49
152 153 1.504900 CATGCGCAGTGTGAATGCT 59.495 52.632 18.32 0.00 41.61 3.79
153 154 2.156446 GCATGCGCAGTGTGAATGC 61.156 57.895 29.18 29.18 40.35 3.56
154 155 1.210672 TGCATGCGCAGTGTGAATG 59.789 52.632 18.88 18.88 45.36 2.67
155 156 3.670989 TGCATGCGCAGTGTGAAT 58.329 50.000 18.32 0.00 45.36 2.57
185 186 9.874205 CTAGTAGCTAATTAGTACTCCGATAGT 57.126 37.037 21.10 4.62 42.62 2.12
188 189 9.790344 TTTCTAGTAGCTAATTAGTACTCCGAT 57.210 33.333 21.10 8.68 0.00 4.18
189 190 9.790344 ATTTCTAGTAGCTAATTAGTACTCCGA 57.210 33.333 21.10 17.46 0.00 4.55
201 202 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
202 203 7.571244 GCGCATTGCATTTATTTCTAGTAGCTA 60.571 37.037 9.69 0.00 45.45 3.32
203 204 6.662616 CGCATTGCATTTATTTCTAGTAGCT 58.337 36.000 9.69 0.00 0.00 3.32
204 205 5.340667 GCGCATTGCATTTATTTCTAGTAGC 59.659 40.000 9.69 0.00 45.45 3.58
205 206 6.901699 GCGCATTGCATTTATTTCTAGTAG 57.098 37.500 9.69 0.00 45.45 2.57
220 221 1.336795 ACAAGGTTTAAGGCGCATTGC 60.337 47.619 18.94 7.40 45.38 3.56
221 222 2.228822 AGACAAGGTTTAAGGCGCATTG 59.771 45.455 18.94 1.22 0.00 2.82
222 223 2.514803 AGACAAGGTTTAAGGCGCATT 58.485 42.857 13.52 13.52 0.00 3.56
223 224 2.200373 AGACAAGGTTTAAGGCGCAT 57.800 45.000 10.83 0.00 0.00 4.73
224 225 2.843401 TAGACAAGGTTTAAGGCGCA 57.157 45.000 10.83 0.00 0.00 6.09
225 226 3.439129 ACAATAGACAAGGTTTAAGGCGC 59.561 43.478 0.00 0.00 0.00 6.53
226 227 6.730960 TTACAATAGACAAGGTTTAAGGCG 57.269 37.500 0.00 0.00 0.00 5.52
227 228 9.188588 GTTTTTACAATAGACAAGGTTTAAGGC 57.811 33.333 0.00 0.00 0.00 4.35
228 229 9.389570 CGTTTTTACAATAGACAAGGTTTAAGG 57.610 33.333 0.00 0.00 0.00 2.69
229 230 8.898792 GCGTTTTTACAATAGACAAGGTTTAAG 58.101 33.333 0.00 0.00 0.00 1.85
230 231 8.404000 TGCGTTTTTACAATAGACAAGGTTTAA 58.596 29.630 0.00 0.00 0.00 1.52
231 232 7.856894 GTGCGTTTTTACAATAGACAAGGTTTA 59.143 33.333 0.00 0.00 0.00 2.01
232 233 6.693978 GTGCGTTTTTACAATAGACAAGGTTT 59.306 34.615 0.00 0.00 0.00 3.27
233 234 6.203647 GTGCGTTTTTACAATAGACAAGGTT 58.796 36.000 0.00 0.00 0.00 3.50
234 235 5.559417 CGTGCGTTTTTACAATAGACAAGGT 60.559 40.000 0.00 0.00 0.00 3.50
235 236 4.843984 CGTGCGTTTTTACAATAGACAAGG 59.156 41.667 0.00 0.00 0.00 3.61
236 237 4.317291 GCGTGCGTTTTTACAATAGACAAG 59.683 41.667 0.00 0.00 0.00 3.16
237 238 4.212911 GCGTGCGTTTTTACAATAGACAA 58.787 39.130 0.00 0.00 0.00 3.18
238 239 3.247886 TGCGTGCGTTTTTACAATAGACA 59.752 39.130 0.00 0.00 0.00 3.41
239 240 3.801293 TGCGTGCGTTTTTACAATAGAC 58.199 40.909 0.00 0.00 0.00 2.59
240 241 4.469625 TTGCGTGCGTTTTTACAATAGA 57.530 36.364 0.00 0.00 0.00 1.98
241 242 5.739237 ATTTGCGTGCGTTTTTACAATAG 57.261 34.783 0.00 0.00 0.00 1.73
242 243 6.512177 AAATTTGCGTGCGTTTTTACAATA 57.488 29.167 0.00 0.00 0.00 1.90
243 244 5.396750 AAATTTGCGTGCGTTTTTACAAT 57.603 30.435 0.00 0.00 0.00 2.71
244 245 4.842139 AAATTTGCGTGCGTTTTTACAA 57.158 31.818 0.00 0.00 0.00 2.41
245 246 5.515626 AGTTAAATTTGCGTGCGTTTTTACA 59.484 32.000 0.00 0.00 0.00 2.41
246 247 5.953936 AGTTAAATTTGCGTGCGTTTTTAC 58.046 33.333 0.00 0.00 0.00 2.01
247 248 7.617528 GCATAGTTAAATTTGCGTGCGTTTTTA 60.618 33.333 0.00 0.00 0.00 1.52
248 249 6.576910 CATAGTTAAATTTGCGTGCGTTTTT 58.423 32.000 0.00 0.00 0.00 1.94
249 250 5.387958 GCATAGTTAAATTTGCGTGCGTTTT 60.388 36.000 0.00 0.00 0.00 2.43
250 251 4.089351 GCATAGTTAAATTTGCGTGCGTTT 59.911 37.500 0.00 0.00 0.00 3.60
251 252 3.606346 GCATAGTTAAATTTGCGTGCGTT 59.394 39.130 0.00 0.00 0.00 4.84
252 253 3.168193 GCATAGTTAAATTTGCGTGCGT 58.832 40.909 0.00 0.00 0.00 5.24
253 254 2.529894 GGCATAGTTAAATTTGCGTGCG 59.470 45.455 11.28 0.00 35.95 5.34
254 255 3.769536 AGGCATAGTTAAATTTGCGTGC 58.230 40.909 11.65 9.38 35.95 5.34
255 256 5.640732 AGAAGGCATAGTTAAATTTGCGTG 58.359 37.500 12.84 0.95 35.95 5.34
256 257 5.897377 AGAAGGCATAGTTAAATTTGCGT 57.103 34.783 11.28 9.43 35.95 5.24
257 258 7.968405 AGTTTAGAAGGCATAGTTAAATTTGCG 59.032 33.333 11.28 0.00 35.95 4.85
258 259 9.076596 CAGTTTAGAAGGCATAGTTAAATTTGC 57.923 33.333 9.45 9.45 0.00 3.68
261 262 9.515226 TCACAGTTTAGAAGGCATAGTTAAATT 57.485 29.630 0.00 0.00 0.00 1.82
262 263 8.947115 GTCACAGTTTAGAAGGCATAGTTAAAT 58.053 33.333 0.00 0.00 0.00 1.40
263 264 7.934665 TGTCACAGTTTAGAAGGCATAGTTAAA 59.065 33.333 0.00 0.00 0.00 1.52
264 265 7.446769 TGTCACAGTTTAGAAGGCATAGTTAA 58.553 34.615 0.00 0.00 0.00 2.01
265 266 6.999950 TGTCACAGTTTAGAAGGCATAGTTA 58.000 36.000 0.00 0.00 0.00 2.24
266 267 5.865085 TGTCACAGTTTAGAAGGCATAGTT 58.135 37.500 0.00 0.00 0.00 2.24
267 268 5.246203 TCTGTCACAGTTTAGAAGGCATAGT 59.754 40.000 4.28 0.00 32.61 2.12
268 269 5.724328 TCTGTCACAGTTTAGAAGGCATAG 58.276 41.667 4.28 0.00 32.61 2.23
269 270 5.337571 CCTCTGTCACAGTTTAGAAGGCATA 60.338 44.000 4.28 0.00 32.61 3.14
270 271 4.564406 CCTCTGTCACAGTTTAGAAGGCAT 60.564 45.833 4.28 0.00 32.61 4.40
271 272 3.244215 CCTCTGTCACAGTTTAGAAGGCA 60.244 47.826 4.28 0.00 32.61 4.75
272 273 3.330267 CCTCTGTCACAGTTTAGAAGGC 58.670 50.000 4.28 0.00 32.61 4.35
273 274 3.578716 TCCCTCTGTCACAGTTTAGAAGG 59.421 47.826 4.28 2.74 32.61 3.46
274 275 4.282195 ACTCCCTCTGTCACAGTTTAGAAG 59.718 45.833 4.28 0.00 32.61 2.85
275 276 4.223953 ACTCCCTCTGTCACAGTTTAGAA 58.776 43.478 4.28 0.00 32.61 2.10
276 277 3.845860 ACTCCCTCTGTCACAGTTTAGA 58.154 45.455 4.28 0.00 32.61 2.10
277 278 4.082136 GGTACTCCCTCTGTCACAGTTTAG 60.082 50.000 4.28 1.54 32.61 1.85
278 279 3.830755 GGTACTCCCTCTGTCACAGTTTA 59.169 47.826 4.28 0.00 32.61 2.01
279 280 2.633481 GGTACTCCCTCTGTCACAGTTT 59.367 50.000 4.28 0.00 32.61 2.66
280 281 2.158295 AGGTACTCCCTCTGTCACAGTT 60.158 50.000 4.28 0.00 40.71 3.16
281 282 1.429687 AGGTACTCCCTCTGTCACAGT 59.570 52.381 4.28 0.00 40.71 3.55
282 283 2.223803 AGGTACTCCCTCTGTCACAG 57.776 55.000 0.00 0.00 40.71 3.66
283 284 3.820195 TTAGGTACTCCCTCTGTCACA 57.180 47.619 0.00 0.00 44.81 3.58
284 285 5.221283 GCTAATTAGGTACTCCCTCTGTCAC 60.221 48.000 14.28 0.00 44.81 3.67
285 286 4.894114 GCTAATTAGGTACTCCCTCTGTCA 59.106 45.833 14.28 0.00 44.81 3.58
286 287 4.023021 CGCTAATTAGGTACTCCCTCTGTC 60.023 50.000 14.28 0.00 44.81 3.51
287 288 3.890147 CGCTAATTAGGTACTCCCTCTGT 59.110 47.826 14.28 0.00 44.81 3.41
288 289 4.023021 GTCGCTAATTAGGTACTCCCTCTG 60.023 50.000 14.28 0.00 44.81 3.35
289 290 4.143543 GTCGCTAATTAGGTACTCCCTCT 58.856 47.826 14.28 0.00 44.81 3.69
290 291 3.887716 TGTCGCTAATTAGGTACTCCCTC 59.112 47.826 14.28 0.00 44.81 4.30
292 293 4.660789 TTGTCGCTAATTAGGTACTCCC 57.339 45.455 14.28 0.00 41.75 4.30
293 294 8.828688 ATTAATTGTCGCTAATTAGGTACTCC 57.171 34.615 14.28 0.00 41.75 3.85
298 299 9.569122 AACCATATTAATTGTCGCTAATTAGGT 57.431 29.630 14.28 0.00 34.87 3.08
302 303 8.908903 TCCAAACCATATTAATTGTCGCTAATT 58.091 29.630 0.00 2.96 34.78 1.40
303 304 8.458573 TCCAAACCATATTAATTGTCGCTAAT 57.541 30.769 0.00 0.00 0.00 1.73
304 305 7.867305 TCCAAACCATATTAATTGTCGCTAA 57.133 32.000 0.00 0.00 0.00 3.09
305 306 7.012894 CCTTCCAAACCATATTAATTGTCGCTA 59.987 37.037 0.00 0.00 0.00 4.26
306 307 6.183360 CCTTCCAAACCATATTAATTGTCGCT 60.183 38.462 0.00 0.00 0.00 4.93
307 308 5.977129 CCTTCCAAACCATATTAATTGTCGC 59.023 40.000 0.00 0.00 0.00 5.19
308 309 7.067008 ACTCCTTCCAAACCATATTAATTGTCG 59.933 37.037 0.00 0.00 0.00 4.35
309 310 8.293699 ACTCCTTCCAAACCATATTAATTGTC 57.706 34.615 0.00 0.00 0.00 3.18
310 311 9.936329 ATACTCCTTCCAAACCATATTAATTGT 57.064 29.630 0.00 0.00 0.00 2.71
358 359 9.296400 GGCGTGTTTGATATTGTTGTAAAATAT 57.704 29.630 0.00 0.00 33.82 1.28
359 360 8.516234 AGGCGTGTTTGATATTGTTGTAAAATA 58.484 29.630 0.00 0.00 0.00 1.40
360 361 7.375053 AGGCGTGTTTGATATTGTTGTAAAAT 58.625 30.769 0.00 0.00 0.00 1.82
361 362 6.740110 AGGCGTGTTTGATATTGTTGTAAAA 58.260 32.000 0.00 0.00 0.00 1.52
362 363 6.320494 AGGCGTGTTTGATATTGTTGTAAA 57.680 33.333 0.00 0.00 0.00 2.01
363 364 5.950758 AGGCGTGTTTGATATTGTTGTAA 57.049 34.783 0.00 0.00 0.00 2.41
364 365 5.950758 AAGGCGTGTTTGATATTGTTGTA 57.049 34.783 0.00 0.00 0.00 2.41
365 366 4.846779 AAGGCGTGTTTGATATTGTTGT 57.153 36.364 0.00 0.00 0.00 3.32
366 367 5.938322 ACTAAGGCGTGTTTGATATTGTTG 58.062 37.500 0.00 0.00 0.00 3.33
367 368 6.569179 AACTAAGGCGTGTTTGATATTGTT 57.431 33.333 0.00 0.00 0.00 2.83
368 369 6.569179 AAACTAAGGCGTGTTTGATATTGT 57.431 33.333 5.14 0.00 35.40 2.71
369 370 8.958175 TTAAAACTAAGGCGTGTTTGATATTG 57.042 30.769 6.38 0.00 36.63 1.90
464 469 1.567504 GATACCCCACACGATTGTCG 58.432 55.000 0.00 0.00 46.93 4.35
465 470 1.134907 ACGATACCCCACACGATTGTC 60.135 52.381 0.00 0.00 31.66 3.18
470 475 1.671979 CTAGACGATACCCCACACGA 58.328 55.000 0.00 0.00 0.00 4.35
475 480 2.447408 TTCTGCTAGACGATACCCCA 57.553 50.000 0.00 0.00 0.00 4.96
496 510 3.891977 GAGGCTTGTTTCCCTTCTTCTTT 59.108 43.478 0.00 0.00 0.00 2.52
499 513 2.163509 GGAGGCTTGTTTCCCTTCTTC 58.836 52.381 0.00 0.00 0.00 2.87
538 639 0.985490 AGAGAAGGCAGGGTGGGATC 60.985 60.000 0.00 0.00 0.00 3.36
540 641 1.613630 GAGAGAAGGCAGGGTGGGA 60.614 63.158 0.00 0.00 0.00 4.37
564 665 0.806868 CACTGTGCATGTAGGGCAAG 59.193 55.000 0.00 0.00 43.91 4.01
593 707 1.350351 AGCCAGTCAGTCAAGATGCTT 59.650 47.619 0.00 0.00 0.00 3.91
685 2632 3.268032 AAAGGGGTGCCAGGAGGG 61.268 66.667 0.00 0.00 40.85 4.30
693 2640 2.924105 GCAGTCAGCAAAGGGGTGC 61.924 63.158 0.00 0.00 44.65 5.01
720 2671 2.971330 AGGCTCTGGTCCATTCATCTAG 59.029 50.000 0.00 0.00 0.00 2.43
725 2676 1.211212 CATGAGGCTCTGGTCCATTCA 59.789 52.381 16.72 0.00 0.00 2.57
733 2684 1.135094 ATGTACCCATGAGGCTCTGG 58.865 55.000 16.72 18.64 40.58 3.86
771 2763 3.428589 GGTCCTGCGTACTTACCTAGTTG 60.429 52.174 0.00 0.00 38.33 3.16
880 2878 4.284178 AGGCAATTAAGGCAACATGAGAT 58.716 39.130 0.00 0.00 41.41 2.75
1006 3015 5.810587 GCACGATAGGTATTTGACTGAAGAA 59.189 40.000 0.00 0.00 43.77 2.52
1060 3085 1.221840 GAGGAAGAAGGCCGCATGA 59.778 57.895 0.00 0.00 0.00 3.07
1148 3173 4.577875 AGTCTTCTTTGATCAGGAAGCTG 58.422 43.478 23.92 11.49 37.11 4.24
1170 3195 2.963101 TCAGTTTCGTTCCCTCTCTCAA 59.037 45.455 0.00 0.00 0.00 3.02
1183 3208 0.951558 CCAACCAACCCTCAGTTTCG 59.048 55.000 0.00 0.00 36.18 3.46
1189 3214 0.856982 ACCATTCCAACCAACCCTCA 59.143 50.000 0.00 0.00 0.00 3.86
1201 3226 2.409870 CCGCTGCTTCCACCATTCC 61.410 63.158 0.00 0.00 0.00 3.01
1300 3325 9.747898 ACACAGGTATAATTTGAAGGATAAACA 57.252 29.630 0.00 0.00 0.00 2.83
1319 3344 1.700186 GGGGAAGAGAAGAACACAGGT 59.300 52.381 0.00 0.00 0.00 4.00
1322 3347 3.583228 TGTAGGGGAAGAGAAGAACACA 58.417 45.455 0.00 0.00 0.00 3.72
1326 3351 6.384305 CCTAAGATTGTAGGGGAAGAGAAGAA 59.616 42.308 0.00 0.00 37.57 2.52
1328 3353 5.900123 TCCTAAGATTGTAGGGGAAGAGAAG 59.100 44.000 0.00 0.00 41.06 2.85
1329 3354 5.661759 GTCCTAAGATTGTAGGGGAAGAGAA 59.338 44.000 0.00 0.00 41.06 2.87
1348 3375 4.534500 TGAAAATACCCAAGCAGAGTCCTA 59.466 41.667 0.00 0.00 0.00 2.94
1364 3391 5.700832 AGAGATTGTTGCTGACGTGAAAATA 59.299 36.000 0.00 0.00 0.00 1.40
1373 3400 4.158394 AGAGAGAGAGAGATTGTTGCTGAC 59.842 45.833 0.00 0.00 0.00 3.51
1440 3467 5.469421 GTGTAGGCTAGCTCGAAATACTCTA 59.531 44.000 15.72 0.26 0.00 2.43
1477 3504 2.135664 ATATGACGTACGCCTGCTTC 57.864 50.000 16.72 4.68 0.00 3.86
1570 3648 4.553756 AAAAAGAAAGAGCGAACCAGTC 57.446 40.909 0.00 0.00 0.00 3.51
1588 3666 6.214399 TGCGCATATGCATATTCATGAAAAA 58.786 32.000 26.52 4.21 40.62 1.94
1589 3667 5.770417 TGCGCATATGCATATTCATGAAAA 58.230 33.333 26.52 0.00 40.62 2.29
1590 3668 5.373981 TGCGCATATGCATATTCATGAAA 57.626 34.783 26.52 2.57 40.62 2.69
1624 3702 2.026822 ACAGCATACTCCTTGAGGTTGG 60.027 50.000 0.00 0.00 33.35 3.77
1640 3718 3.240134 GACGAGGGCCTTCACAGCA 62.240 63.158 16.07 0.00 0.00 4.41
1664 3742 2.359981 TGGACCCTAGGTGATCTACG 57.640 55.000 8.29 0.00 35.25 3.51
1771 3849 3.346315 TGAATGTAGGATGCACCAACAG 58.654 45.455 7.86 0.00 42.04 3.16
1772 3850 3.346315 CTGAATGTAGGATGCACCAACA 58.654 45.455 7.86 0.00 42.04 3.33
1787 3865 5.063180 TGCAAGGAAATTACTGCTGAATG 57.937 39.130 0.00 0.00 0.00 2.67
1955 4045 6.151144 ACATGAAAGGCACAAAGGTATCTTAC 59.849 38.462 0.00 0.00 32.01 2.34
2040 4130 3.947868 CATCAAGATGTCTCACCCAAGT 58.052 45.455 1.90 0.00 34.23 3.16
2062 4152 4.380531 CTGCTGAAACCACTCAAGTAAGA 58.619 43.478 0.00 0.00 0.00 2.10
2075 4169 1.339438 TGAGCCATCTCCTGCTGAAAC 60.339 52.381 0.00 0.00 38.11 2.78
2092 4186 1.926511 GCACGGCATTGGGAACTGAG 61.927 60.000 0.00 0.00 0.00 3.35
2202 4297 7.867921 AGTTTAAGATACCCAATACATGTCCA 58.132 34.615 0.00 0.00 0.00 4.02
2216 4311 8.475331 TCAGGTCGAAATCAAGTTTAAGATAC 57.525 34.615 0.00 0.00 0.00 2.24
2234 4333 0.999406 CACGTAGGCATTTCAGGTCG 59.001 55.000 0.00 0.00 0.00 4.79
2283 4385 3.451526 AGCTTGCTTGTCTTTGCTTTTC 58.548 40.909 0.00 0.00 0.00 2.29
2310 4412 2.031258 TGCAAACTGAAACTGACCGA 57.969 45.000 0.00 0.00 0.00 4.69
2379 4483 5.484715 AGCTTGCTGCAAATGATAATTGTT 58.515 33.333 16.74 0.00 45.94 2.83
2418 4522 2.264166 GCGCTCTGAGAAGGTGCT 59.736 61.111 9.28 0.00 34.21 4.40
2470 4574 0.533755 GCAGTATCAGAAGGCGGCAT 60.534 55.000 13.08 0.00 0.00 4.40
2517 4621 7.640240 GTCGGCTATTGAACATTTGAACTTATC 59.360 37.037 0.00 0.00 0.00 1.75
2522 4626 4.088648 CGTCGGCTATTGAACATTTGAAC 58.911 43.478 0.00 0.00 0.00 3.18
2523 4627 3.126171 CCGTCGGCTATTGAACATTTGAA 59.874 43.478 0.00 0.00 0.00 2.69
2524 4628 2.675844 CCGTCGGCTATTGAACATTTGA 59.324 45.455 0.00 0.00 0.00 2.69
2525 4629 2.418628 ACCGTCGGCTATTGAACATTTG 59.581 45.455 12.28 0.00 0.00 2.32
2526 4630 2.418628 CACCGTCGGCTATTGAACATTT 59.581 45.455 12.28 0.00 0.00 2.32
2527 4631 2.006888 CACCGTCGGCTATTGAACATT 58.993 47.619 12.28 0.00 0.00 2.71
2528 4632 1.651987 CACCGTCGGCTATTGAACAT 58.348 50.000 12.28 0.00 0.00 2.71
2529 4633 0.390603 CCACCGTCGGCTATTGAACA 60.391 55.000 12.28 0.00 0.00 3.18
2559 4667 2.685388 TCACGGAATTTCAAGTGTTGCA 59.315 40.909 17.78 0.00 36.16 4.08
2562 4670 5.163457 ACCATTTCACGGAATTTCAAGTGTT 60.163 36.000 17.78 7.29 36.16 3.32
2569 4677 6.072673 ACTCTGTAACCATTTCACGGAATTTC 60.073 38.462 0.00 0.00 0.00 2.17
2656 4772 8.395633 CCGATCTTTTATCTGTTAAACGGAAAT 58.604 33.333 0.00 0.00 37.66 2.17
2661 4777 8.600625 TGAATCCGATCTTTTATCTGTTAAACG 58.399 33.333 0.00 0.00 29.47 3.60
2765 4881 2.576191 AGCTTGATTTACCTGCACCCTA 59.424 45.455 0.00 0.00 0.00 3.53
2771 4887 1.467920 AGCCAGCTTGATTTACCTGC 58.532 50.000 0.00 0.00 0.00 4.85
2808 4924 9.013229 CAGCATTTGTAAGGCATATTATTCCTA 57.987 33.333 0.00 0.00 41.41 2.94
2815 4931 5.418524 TGTGTCAGCATTTGTAAGGCATATT 59.581 36.000 0.00 0.00 41.41 1.28
2827 4943 7.276218 GCAACATGTAATATTGTGTCAGCATTT 59.724 33.333 0.00 0.00 0.00 2.32
2845 4961 2.486982 GTCTGCATCTTCAGCAACATGT 59.513 45.455 0.00 0.00 42.17 3.21
2966 5082 3.172339 ACTGAGCAGAGACTTGAGGAAT 58.828 45.455 4.21 0.00 0.00 3.01
2995 5111 3.565902 CAGTGGTTCTTCTTTTCCAGACC 59.434 47.826 0.00 0.00 0.00 3.85
3053 5169 9.950496 GGATAGTAATGGACACTCATATGAAAT 57.050 33.333 6.90 0.00 0.00 2.17
3061 5177 5.519808 ACTGAGGATAGTAATGGACACTCA 58.480 41.667 0.00 0.00 0.00 3.41
3249 5367 3.857157 ATGCCTTACCCGATACATGTT 57.143 42.857 2.30 0.00 0.00 2.71
3322 5440 4.217118 GCCTGACTTGAAAGATGAATGTGT 59.783 41.667 0.00 0.00 0.00 3.72
3323 5441 4.216902 TGCCTGACTTGAAAGATGAATGTG 59.783 41.667 0.00 0.00 0.00 3.21
3329 5447 4.037208 ACAGTTTGCCTGACTTGAAAGATG 59.963 41.667 0.00 0.00 44.49 2.90
3330 5448 4.210331 ACAGTTTGCCTGACTTGAAAGAT 58.790 39.130 0.00 0.00 44.49 2.40
3332 5450 3.546815 CGACAGTTTGCCTGACTTGAAAG 60.547 47.826 0.00 0.00 44.49 2.62
3333 5451 2.354510 CGACAGTTTGCCTGACTTGAAA 59.645 45.455 0.00 0.00 44.49 2.69
3334 5452 1.939934 CGACAGTTTGCCTGACTTGAA 59.060 47.619 0.00 0.00 44.49 2.69
3356 5488 3.611530 GCAAACCGCACAGAACATAACAT 60.612 43.478 0.00 0.00 41.79 2.71
3372 5504 0.740737 AATCTGCGCATAGGCAAACC 59.259 50.000 12.24 0.00 43.39 3.27
3486 5713 7.419057 CCCACTGTTATAGGCAGATTTTAGAGA 60.419 40.741 11.73 0.00 37.40 3.10
3793 6047 3.096092 ACAAAAGCCAGGAACACAAGAA 58.904 40.909 0.00 0.00 0.00 2.52
3900 6155 7.872113 AAGGAATGGCAAAAATAAAACACAA 57.128 28.000 0.00 0.00 0.00 3.33
3985 6579 4.201812 CCCATGTAAACTGACATACAAGCG 60.202 45.833 0.00 0.00 37.99 4.68
4217 7111 2.346284 TACCTGCAAACAGCCCCGTT 62.346 55.000 0.00 0.00 43.02 4.44
4311 7205 1.560923 CCTTAGAGATGTGAACGCGG 58.439 55.000 12.47 0.00 0.00 6.46
4361 7255 7.659652 AGAAGACATGTTTTTAGCTGTAGTC 57.340 36.000 0.00 0.00 0.00 2.59
4398 7292 2.507471 CAAGACCTTCTTCCCTAGCCAT 59.493 50.000 0.00 0.00 33.78 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.