Multiple sequence alignment - TraesCS1B01G073200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G073200 chr1B 100.000 2912 0 0 1 2912 57373298 57376209 0.000000e+00 5378.0
1 TraesCS1B01G073200 chr1B 85.227 1232 143 17 317 1529 57129891 57131102 0.000000e+00 1230.0
2 TraesCS1B01G073200 chr1B 84.174 872 121 16 669 1529 58328672 58327807 0.000000e+00 830.0
3 TraesCS1B01G073200 chr1B 83.314 875 126 14 670 1529 57791639 57790770 0.000000e+00 789.0
4 TraesCS1B01G073200 chr1B 81.619 914 145 13 620 1520 57015855 57016758 0.000000e+00 736.0
5 TraesCS1B01G073200 chr1B 85.041 615 84 8 2170 2778 58326758 58326146 1.150000e-173 619.0
6 TraesCS1B01G073200 chr1B 87.580 314 39 0 1534 1847 57131830 57132143 5.930000e-97 364.0
7 TraesCS1B01G073200 chr1B 84.132 334 51 2 1524 1856 56618940 56618608 3.620000e-84 322.0
8 TraesCS1B01G073200 chr1B 82.036 334 58 2 1524 1856 57790052 57789720 1.710000e-72 283.0
9 TraesCS1B01G073200 chr1B 95.556 90 4 0 2 91 57237821 57237910 8.410000e-31 145.0
10 TraesCS1B01G073200 chr1A 94.892 1390 57 3 468 1856 36756141 36757517 0.000000e+00 2161.0
11 TraesCS1B01G073200 chr1A 97.981 743 15 0 2170 2912 36757516 36758258 0.000000e+00 1290.0
12 TraesCS1B01G073200 chr1A 82.034 885 148 11 643 1520 36635532 36636412 0.000000e+00 743.0
13 TraesCS1B01G073200 chr1A 84.303 739 97 13 2170 2892 37503415 37502680 0.000000e+00 704.0
14 TraesCS1B01G073200 chr1A 81.507 730 113 14 2170 2895 36637464 36638175 5.410000e-162 580.0
15 TraesCS1B01G073200 chr1A 86.364 330 43 2 1528 1856 36614778 36615106 2.760000e-95 359.0
16 TraesCS1B01G073200 chr1A 83.631 336 53 2 1522 1856 36186734 36186400 6.060000e-82 315.0
17 TraesCS1B01G073200 chr1A 93.171 205 9 4 59 258 36754224 36754428 2.190000e-76 296.0
18 TraesCS1B01G073200 chr1A 88.281 128 6 4 318 444 36756032 36756151 8.410000e-31 145.0
19 TraesCS1B01G073200 chr1A 79.845 129 20 6 2058 2184 13980500 13980624 4.000000e-14 89.8
20 TraesCS1B01G073200 chr1D 99.135 578 5 0 2335 2912 37448564 37449141 0.000000e+00 1040.0
21 TraesCS1B01G073200 chr1D 85.155 869 113 13 669 1529 38368017 38367157 0.000000e+00 876.0
22 TraesCS1B01G073200 chr1D 83.697 871 128 12 669 1529 38259680 38258814 0.000000e+00 809.0
23 TraesCS1B01G073200 chr1D 81.106 958 153 17 576 1520 37423756 37424698 0.000000e+00 741.0
24 TraesCS1B01G073200 chr1D 84.146 738 100 11 2170 2892 38558382 38557647 0.000000e+00 699.0
25 TraesCS1B01G073200 chr1D 82.003 739 99 12 2170 2895 38582095 38581378 5.370000e-167 597.0
26 TraesCS1B01G073200 chr1D 86.497 511 69 0 2170 2680 38366108 38365598 1.960000e-156 562.0
27 TraesCS1B01G073200 chr1D 84.543 317 47 2 1522 1837 37425423 37425738 2.180000e-81 313.0
28 TraesCS1B01G073200 chr1D 83.483 333 55 0 1524 1856 36616607 36616275 7.840000e-81 311.0
29 TraesCS1B01G073200 chr1D 82.934 334 55 2 1524 1856 38258095 38257763 1.700000e-77 300.0
30 TraesCS1B01G073200 chr2B 98.107 317 6 0 1855 2171 756713905 756713589 1.180000e-153 553.0
31 TraesCS1B01G073200 chr2B 96.845 317 10 0 1855 2171 663740628 663740944 5.530000e-147 531.0
32 TraesCS1B01G073200 chr2B 88.636 44 3 2 2144 2185 41848200 41848157 5.000000e-03 52.8
33 TraesCS1B01G073200 chr6A 86.220 508 68 2 2168 2674 547817079 547817585 1.530000e-152 549.0
34 TraesCS1B01G073200 chr7A 97.476 317 8 0 1855 2171 433429899 433430215 2.550000e-150 542.0
35 TraesCS1B01G073200 chr6B 85.630 508 71 2 2168 2674 601867781 601868287 1.540000e-147 532.0
36 TraesCS1B01G073200 chr6B 87.761 335 39 2 1855 2189 314443822 314444154 9.780000e-105 390.0
37 TraesCS1B01G073200 chr4A 96.845 317 10 0 1855 2171 60018613 60018297 5.530000e-147 531.0
38 TraesCS1B01G073200 chr7B 96.541 318 10 1 1855 2171 270897084 270897401 2.570000e-145 525.0
39 TraesCS1B01G073200 chr3B 96.530 317 11 0 1855 2171 646823268 646823584 2.570000e-145 525.0
40 TraesCS1B01G073200 chr5D 96.519 316 11 0 1855 2170 337582592 337582907 9.250000e-145 523.0
41 TraesCS1B01G073200 chr2D 95.611 319 14 0 1853 2171 105736881 105737199 2.000000e-141 512.0
42 TraesCS1B01G073200 chr3D 95.342 322 14 1 1855 2176 165375177 165375497 7.200000e-141 510.0
43 TraesCS1B01G073200 chr3A 81.061 132 20 5 2058 2187 499367459 499367587 1.850000e-17 100.0
44 TraesCS1B01G073200 chr3A 100.000 29 0 0 2144 2172 145252766 145252794 1.000000e-03 54.7
45 TraesCS1B01G073200 chr7D 79.699 133 21 6 2058 2187 74016381 74016252 1.110000e-14 91.6
46 TraesCS1B01G073200 chr2A 90.244 41 3 1 2144 2184 58458006 58457967 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G073200 chr1B 57373298 57376209 2911 False 5378.0 5378 100.00000 1 2912 1 chr1B.!!$F3 2911
1 TraesCS1B01G073200 chr1B 57129891 57132143 2252 False 797.0 1230 86.40350 317 1847 2 chr1B.!!$F4 1530
2 TraesCS1B01G073200 chr1B 57015855 57016758 903 False 736.0 736 81.61900 620 1520 1 chr1B.!!$F1 900
3 TraesCS1B01G073200 chr1B 58326146 58328672 2526 True 724.5 830 84.60750 669 2778 2 chr1B.!!$R3 2109
4 TraesCS1B01G073200 chr1B 57789720 57791639 1919 True 536.0 789 82.67500 670 1856 2 chr1B.!!$R2 1186
5 TraesCS1B01G073200 chr1A 36754224 36758258 4034 False 973.0 2161 93.58125 59 2912 4 chr1A.!!$F4 2853
6 TraesCS1B01G073200 chr1A 37502680 37503415 735 True 704.0 704 84.30300 2170 2892 1 chr1A.!!$R2 722
7 TraesCS1B01G073200 chr1A 36635532 36638175 2643 False 661.5 743 81.77050 643 2895 2 chr1A.!!$F3 2252
8 TraesCS1B01G073200 chr1D 37448564 37449141 577 False 1040.0 1040 99.13500 2335 2912 1 chr1D.!!$F1 577
9 TraesCS1B01G073200 chr1D 38365598 38368017 2419 True 719.0 876 85.82600 669 2680 2 chr1D.!!$R5 2011
10 TraesCS1B01G073200 chr1D 38557647 38558382 735 True 699.0 699 84.14600 2170 2892 1 chr1D.!!$R2 722
11 TraesCS1B01G073200 chr1D 38581378 38582095 717 True 597.0 597 82.00300 2170 2895 1 chr1D.!!$R3 725
12 TraesCS1B01G073200 chr1D 38257763 38259680 1917 True 554.5 809 83.31550 669 1856 2 chr1D.!!$R4 1187
13 TraesCS1B01G073200 chr1D 37423756 37425738 1982 False 527.0 741 82.82450 576 1837 2 chr1D.!!$F2 1261
14 TraesCS1B01G073200 chr6A 547817079 547817585 506 False 549.0 549 86.22000 2168 2674 1 chr6A.!!$F1 506
15 TraesCS1B01G073200 chr6B 601867781 601868287 506 False 532.0 532 85.63000 2168 2674 1 chr6B.!!$F2 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 2271 0.118346 TCCACCACACTGATACCCCT 59.882 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 4374 0.256752 TGCATGCTTGGCCACTAGAT 59.743 50.0 20.33 0.0 0.0 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.135747 CCAGATCACCCTCTCTCTTTTC 57.864 50.000 0.00 0.00 0.00 2.29
22 23 3.774216 CCAGATCACCCTCTCTCTTTTCT 59.226 47.826 0.00 0.00 0.00 2.52
23 24 4.141959 CCAGATCACCCTCTCTCTTTTCTC 60.142 50.000 0.00 0.00 0.00 2.87
24 25 4.030216 AGATCACCCTCTCTCTTTTCTCC 58.970 47.826 0.00 0.00 0.00 3.71
25 26 3.260269 TCACCCTCTCTCTTTTCTCCA 57.740 47.619 0.00 0.00 0.00 3.86
26 27 3.169099 TCACCCTCTCTCTTTTCTCCAG 58.831 50.000 0.00 0.00 0.00 3.86
27 28 1.905894 ACCCTCTCTCTTTTCTCCAGC 59.094 52.381 0.00 0.00 0.00 4.85
28 29 1.209261 CCCTCTCTCTTTTCTCCAGCC 59.791 57.143 0.00 0.00 0.00 4.85
29 30 1.134848 CCTCTCTCTTTTCTCCAGCCG 60.135 57.143 0.00 0.00 0.00 5.52
30 31 1.548269 CTCTCTCTTTTCTCCAGCCGT 59.452 52.381 0.00 0.00 0.00 5.68
31 32 1.273606 TCTCTCTTTTCTCCAGCCGTG 59.726 52.381 0.00 0.00 0.00 4.94
32 33 0.321671 TCTCTTTTCTCCAGCCGTGG 59.678 55.000 0.00 0.00 46.63 4.94
33 34 1.301677 CTCTTTTCTCCAGCCGTGGC 61.302 60.000 1.67 1.67 44.60 5.01
34 35 2.668212 TTTTCTCCAGCCGTGGCG 60.668 61.111 5.02 0.52 44.60 5.69
35 36 3.171828 TTTTCTCCAGCCGTGGCGA 62.172 57.895 5.02 0.00 44.60 5.54
36 37 3.876589 TTTCTCCAGCCGTGGCGAC 62.877 63.158 5.02 0.00 44.60 5.19
38 39 3.449227 CTCCAGCCGTGGCGACTA 61.449 66.667 5.02 0.00 44.60 2.59
39 40 3.417275 CTCCAGCCGTGGCGACTAG 62.417 68.421 5.02 0.00 44.60 2.57
43 44 2.887360 GCCGTGGCGACTAGGTTA 59.113 61.111 0.00 0.00 0.00 2.85
44 45 1.226888 GCCGTGGCGACTAGGTTAG 60.227 63.158 0.00 0.00 0.00 2.34
45 46 1.660560 GCCGTGGCGACTAGGTTAGA 61.661 60.000 0.00 0.00 0.00 2.10
46 47 0.813184 CCGTGGCGACTAGGTTAGAA 59.187 55.000 0.00 0.00 0.00 2.10
47 48 1.407979 CCGTGGCGACTAGGTTAGAAT 59.592 52.381 0.00 0.00 0.00 2.40
48 49 2.159142 CCGTGGCGACTAGGTTAGAATT 60.159 50.000 0.00 0.00 0.00 2.17
49 50 3.067180 CCGTGGCGACTAGGTTAGAATTA 59.933 47.826 0.00 0.00 0.00 1.40
50 51 4.440525 CCGTGGCGACTAGGTTAGAATTAA 60.441 45.833 0.00 0.00 0.00 1.40
51 52 5.287226 CGTGGCGACTAGGTTAGAATTAAT 58.713 41.667 0.00 0.00 0.00 1.40
52 53 5.175126 CGTGGCGACTAGGTTAGAATTAATG 59.825 44.000 0.00 0.00 0.00 1.90
53 54 6.047231 GTGGCGACTAGGTTAGAATTAATGT 58.953 40.000 0.00 0.00 0.00 2.71
54 55 7.205297 GTGGCGACTAGGTTAGAATTAATGTA 58.795 38.462 0.00 0.00 0.00 2.29
55 56 7.381678 GTGGCGACTAGGTTAGAATTAATGTAG 59.618 40.741 0.00 0.00 0.00 2.74
56 57 7.069085 TGGCGACTAGGTTAGAATTAATGTAGT 59.931 37.037 0.00 0.00 0.00 2.73
57 58 7.594386 GGCGACTAGGTTAGAATTAATGTAGTC 59.406 40.741 0.00 0.00 35.76 2.59
172 175 3.644738 GAGTCCTTGGGATAATTCCGGTA 59.355 47.826 0.00 0.00 43.63 4.02
173 176 4.240323 AGTCCTTGGGATAATTCCGGTAT 58.760 43.478 0.00 0.00 43.63 2.73
195 200 1.812571 AGGCTTGGCTAACAATGAACG 59.187 47.619 0.00 0.00 38.65 3.95
228 233 4.744136 ATATCGATGCACATGCTTGAAG 57.256 40.909 8.54 0.00 42.66 3.02
231 236 1.465777 CGATGCACATGCTTGAAGACA 59.534 47.619 6.60 0.00 42.66 3.41
232 237 2.726989 CGATGCACATGCTTGAAGACAC 60.727 50.000 6.60 0.00 42.66 3.67
233 238 0.953727 TGCACATGCTTGAAGACACC 59.046 50.000 6.60 0.00 42.66 4.16
235 240 1.511850 CACATGCTTGAAGACACCGA 58.488 50.000 6.60 0.00 0.00 4.69
246 252 4.893608 TGAAGACACCGAAATGAAGATGA 58.106 39.130 0.00 0.00 0.00 2.92
258 264 5.649782 AATGAAGATGATGGACACAAACC 57.350 39.130 0.00 0.00 0.00 3.27
261 267 3.077484 AGATGATGGACACAAACCTGG 57.923 47.619 0.00 0.00 0.00 4.45
283 993 4.151867 GGTGTCACGTTTAGATGAGGAAAC 59.848 45.833 0.00 0.00 33.17 2.78
290 1000 4.865365 CGTTTAGATGAGGAAACTGGAGAC 59.135 45.833 0.00 0.00 44.43 3.36
291 1001 4.720649 TTAGATGAGGAAACTGGAGACG 57.279 45.455 0.00 0.00 44.43 4.18
297 1007 3.875134 TGAGGAAACTGGAGACGTTTTTC 59.125 43.478 0.00 0.00 44.43 2.29
298 1008 4.127907 GAGGAAACTGGAGACGTTTTTCT 58.872 43.478 0.00 0.00 44.43 2.52
299 1009 4.524053 AGGAAACTGGAGACGTTTTTCTT 58.476 39.130 0.00 0.00 41.13 2.52
300 1010 4.948004 AGGAAACTGGAGACGTTTTTCTTT 59.052 37.500 0.00 0.00 41.13 2.52
302 1012 6.071560 AGGAAACTGGAGACGTTTTTCTTTTT 60.072 34.615 0.00 0.00 41.13 1.94
309 1022 8.013236 TGGAGACGTTTTTCTTTTTCTTTTTG 57.987 30.769 0.00 0.00 0.00 2.44
345 1893 2.028385 ACACTAGTTGATTGGGGACGTC 60.028 50.000 7.13 7.13 0.00 4.34
530 2081 2.022240 CTCCTCCGGCTGAACCTAGC 62.022 65.000 0.00 0.00 42.94 3.42
543 2094 0.251653 ACCTAGCTGAAGTCCGGTCA 60.252 55.000 0.00 0.00 0.00 4.02
660 2271 0.118346 TCCACCACACTGATACCCCT 59.882 55.000 0.00 0.00 0.00 4.79
742 2359 2.032071 CCCCGAGACGCCTTTGTT 59.968 61.111 0.00 0.00 0.00 2.83
856 2476 2.032681 GCACCCTGAACGGCTTCT 59.967 61.111 0.00 0.00 0.00 2.85
932 2558 1.347817 CTTGCCGTCGCTCTCTTCAC 61.348 60.000 0.00 0.00 35.36 3.18
1063 2689 1.215655 CTTATTCGGCCGCTTCCTCG 61.216 60.000 23.51 0.91 0.00 4.63
1142 2768 0.319641 GCGAAACGGACAGAAGAGGT 60.320 55.000 0.00 0.00 0.00 3.85
1272 2898 0.033503 TCGACCTGCTCCAGATGGTA 60.034 55.000 0.00 0.00 32.44 3.25
1274 2900 0.755686 GACCTGCTCCAGATGGTAGG 59.244 60.000 14.01 14.01 37.65 3.18
1346 2979 0.748367 GGCTTCTTTAAGGAGGGCGG 60.748 60.000 7.46 0.00 32.98 6.13
1731 4094 1.141254 TCGTGCAAGGGAGTTAAACCA 59.859 47.619 0.00 0.00 0.00 3.67
1794 4157 2.749441 GGGAGAACTGCTGCTGCC 60.749 66.667 13.47 0.00 38.71 4.85
1807 4170 2.222445 GCTGCTGCCAAGAAAATGTTTG 59.778 45.455 3.85 0.00 0.00 2.93
1854 4217 4.222145 ACAGTGACCGTTTCCATATACACT 59.778 41.667 0.00 0.00 37.75 3.55
1855 4218 5.419788 ACAGTGACCGTTTCCATATACACTA 59.580 40.000 0.00 0.00 35.95 2.74
1856 4219 5.747197 CAGTGACCGTTTCCATATACACTAC 59.253 44.000 0.00 0.00 35.95 2.73
1857 4220 5.655532 AGTGACCGTTTCCATATACACTACT 59.344 40.000 0.00 0.00 35.95 2.57
1858 4221 5.975939 GTGACCGTTTCCATATACACTACTC 59.024 44.000 0.00 0.00 0.00 2.59
1859 4222 5.068198 TGACCGTTTCCATATACACTACTCC 59.932 44.000 0.00 0.00 0.00 3.85
1860 4223 4.343239 ACCGTTTCCATATACACTACTCCC 59.657 45.833 0.00 0.00 0.00 4.30
1861 4224 4.587684 CCGTTTCCATATACACTACTCCCT 59.412 45.833 0.00 0.00 0.00 4.20
1862 4225 5.278858 CCGTTTCCATATACACTACTCCCTC 60.279 48.000 0.00 0.00 0.00 4.30
1863 4226 5.278858 CGTTTCCATATACACTACTCCCTCC 60.279 48.000 0.00 0.00 0.00 4.30
1864 4227 5.681494 TTCCATATACACTACTCCCTCCT 57.319 43.478 0.00 0.00 0.00 3.69
1865 4228 5.681494 TCCATATACACTACTCCCTCCTT 57.319 43.478 0.00 0.00 0.00 3.36
1866 4229 6.039415 TCCATATACACTACTCCCTCCTTT 57.961 41.667 0.00 0.00 0.00 3.11
1867 4230 6.075984 TCCATATACACTACTCCCTCCTTTC 58.924 44.000 0.00 0.00 0.00 2.62
1868 4231 5.246429 CCATATACACTACTCCCTCCTTTCC 59.754 48.000 0.00 0.00 0.00 3.13
1869 4232 1.558233 ACACTACTCCCTCCTTTCCG 58.442 55.000 0.00 0.00 0.00 4.30
1870 4233 0.824759 CACTACTCCCTCCTTTCCGG 59.175 60.000 0.00 0.00 0.00 5.14
1871 4234 0.412640 ACTACTCCCTCCTTTCCGGT 59.587 55.000 0.00 0.00 0.00 5.28
1872 4235 1.203275 ACTACTCCCTCCTTTCCGGTT 60.203 52.381 0.00 0.00 0.00 4.44
1873 4236 1.907255 CTACTCCCTCCTTTCCGGTTT 59.093 52.381 0.00 0.00 0.00 3.27
1874 4237 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
1875 4238 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
1876 4239 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
1877 4240 4.106324 ACTCCCTCCTTTCCGGTTTATAA 58.894 43.478 0.00 0.00 0.00 0.98
1878 4241 4.163649 ACTCCCTCCTTTCCGGTTTATAAG 59.836 45.833 0.00 0.00 0.00 1.73
1879 4242 3.457012 TCCCTCCTTTCCGGTTTATAAGG 59.543 47.826 0.00 8.36 38.78 2.69
1880 4243 3.211865 CCTCCTTTCCGGTTTATAAGGC 58.788 50.000 0.00 0.00 37.62 4.35
1881 4244 2.870411 CTCCTTTCCGGTTTATAAGGCG 59.130 50.000 0.00 0.00 37.62 5.52
1882 4245 2.236893 TCCTTTCCGGTTTATAAGGCGT 59.763 45.455 0.00 0.00 37.62 5.68
1883 4246 3.450457 TCCTTTCCGGTTTATAAGGCGTA 59.550 43.478 0.00 0.00 37.62 4.42
1884 4247 4.101430 TCCTTTCCGGTTTATAAGGCGTAT 59.899 41.667 0.00 0.00 37.62 3.06
1885 4248 4.818005 CCTTTCCGGTTTATAAGGCGTATT 59.182 41.667 0.00 0.00 31.59 1.89
1886 4249 5.297527 CCTTTCCGGTTTATAAGGCGTATTT 59.702 40.000 0.00 0.00 31.59 1.40
1887 4250 5.989551 TTCCGGTTTATAAGGCGTATTTC 57.010 39.130 0.00 0.00 0.00 2.17
1888 4251 5.021033 TCCGGTTTATAAGGCGTATTTCA 57.979 39.130 0.00 0.00 0.00 2.69
1889 4252 5.426504 TCCGGTTTATAAGGCGTATTTCAA 58.573 37.500 0.00 0.00 0.00 2.69
1890 4253 5.294060 TCCGGTTTATAAGGCGTATTTCAAC 59.706 40.000 0.00 0.77 0.00 3.18
1891 4254 5.295045 CCGGTTTATAAGGCGTATTTCAACT 59.705 40.000 0.00 0.00 0.00 3.16
1892 4255 6.183360 CCGGTTTATAAGGCGTATTTCAACTT 60.183 38.462 0.00 0.00 0.00 2.66
1893 4256 7.245604 CGGTTTATAAGGCGTATTTCAACTTT 58.754 34.615 0.00 0.00 0.00 2.66
1894 4257 7.751793 CGGTTTATAAGGCGTATTTCAACTTTT 59.248 33.333 0.00 0.00 0.00 2.27
1895 4258 9.414295 GGTTTATAAGGCGTATTTCAACTTTTT 57.586 29.630 0.00 0.00 0.00 1.94
1917 4280 7.946381 TTTTGTTTTTCCAATTTAAAGGGCT 57.054 28.000 4.24 0.00 0.00 5.19
1918 4281 7.946381 TTTGTTTTTCCAATTTAAAGGGCTT 57.054 28.000 4.24 0.00 0.00 4.35
1919 4282 9.462606 TTTTGTTTTTCCAATTTAAAGGGCTTA 57.537 25.926 4.24 0.00 0.00 3.09
1920 4283 9.634021 TTTGTTTTTCCAATTTAAAGGGCTTAT 57.366 25.926 4.24 0.00 0.00 1.73
1921 4284 8.840833 TGTTTTTCCAATTTAAAGGGCTTATC 57.159 30.769 4.24 0.00 0.00 1.75
1922 4285 8.655901 TGTTTTTCCAATTTAAAGGGCTTATCT 58.344 29.630 4.24 0.00 0.00 1.98
1923 4286 9.151471 GTTTTTCCAATTTAAAGGGCTTATCTC 57.849 33.333 4.24 0.00 0.00 2.75
1924 4287 7.418337 TTTCCAATTTAAAGGGCTTATCTCC 57.582 36.000 4.24 0.00 0.00 3.71
1925 4288 6.086011 TCCAATTTAAAGGGCTTATCTCCA 57.914 37.500 4.24 0.00 0.00 3.86
1926 4289 6.682537 TCCAATTTAAAGGGCTTATCTCCAT 58.317 36.000 4.24 0.00 0.00 3.41
1927 4290 6.777580 TCCAATTTAAAGGGCTTATCTCCATC 59.222 38.462 4.24 0.00 0.00 3.51
1928 4291 6.779539 CCAATTTAAAGGGCTTATCTCCATCT 59.220 38.462 0.00 0.00 0.00 2.90
1929 4292 7.040132 CCAATTTAAAGGGCTTATCTCCATCTC 60.040 40.741 0.00 0.00 0.00 2.75
1930 4293 6.575244 TTTAAAGGGCTTATCTCCATCTCA 57.425 37.500 0.00 0.00 0.00 3.27
1931 4294 6.770286 TTAAAGGGCTTATCTCCATCTCAT 57.230 37.500 0.00 0.00 0.00 2.90
1932 4295 5.659849 AAAGGGCTTATCTCCATCTCATT 57.340 39.130 0.00 0.00 0.00 2.57
1933 4296 5.659849 AAGGGCTTATCTCCATCTCATTT 57.340 39.130 0.00 0.00 0.00 2.32
1934 4297 5.659849 AGGGCTTATCTCCATCTCATTTT 57.340 39.130 0.00 0.00 0.00 1.82
1935 4298 6.023334 AGGGCTTATCTCCATCTCATTTTT 57.977 37.500 0.00 0.00 0.00 1.94
1936 4299 7.154191 AGGGCTTATCTCCATCTCATTTTTA 57.846 36.000 0.00 0.00 0.00 1.52
1937 4300 7.230027 AGGGCTTATCTCCATCTCATTTTTAG 58.770 38.462 0.00 0.00 0.00 1.85
1938 4301 7.001073 GGGCTTATCTCCATCTCATTTTTAGT 58.999 38.462 0.00 0.00 0.00 2.24
1939 4302 7.503902 GGGCTTATCTCCATCTCATTTTTAGTT 59.496 37.037 0.00 0.00 0.00 2.24
1940 4303 8.907885 GGCTTATCTCCATCTCATTTTTAGTTT 58.092 33.333 0.00 0.00 0.00 2.66
1944 4307 8.792830 ATCTCCATCTCATTTTTAGTTTTCGA 57.207 30.769 0.00 0.00 0.00 3.71
1945 4308 8.256611 TCTCCATCTCATTTTTAGTTTTCGAG 57.743 34.615 0.00 0.00 0.00 4.04
1946 4309 7.334421 TCTCCATCTCATTTTTAGTTTTCGAGG 59.666 37.037 0.00 0.00 0.00 4.63
1947 4310 6.030228 CCATCTCATTTTTAGTTTTCGAGGC 58.970 40.000 0.00 0.00 0.00 4.70
1948 4311 5.277601 TCTCATTTTTAGTTTTCGAGGCG 57.722 39.130 0.00 0.00 0.00 5.52
1949 4312 3.817238 TCATTTTTAGTTTTCGAGGCGC 58.183 40.909 0.00 0.00 0.00 6.53
1950 4313 3.251245 TCATTTTTAGTTTTCGAGGCGCA 59.749 39.130 10.83 0.00 0.00 6.09
1951 4314 3.907894 TTTTTAGTTTTCGAGGCGCAT 57.092 38.095 10.83 0.00 0.00 4.73
1952 4315 3.907894 TTTTAGTTTTCGAGGCGCATT 57.092 38.095 10.83 0.00 0.00 3.56
1953 4316 5.359716 TTTTTAGTTTTCGAGGCGCATTA 57.640 34.783 10.83 0.00 0.00 1.90
1954 4317 5.359716 TTTTAGTTTTCGAGGCGCATTAA 57.640 34.783 10.83 0.00 0.00 1.40
1955 4318 5.359716 TTTAGTTTTCGAGGCGCATTAAA 57.640 34.783 10.83 4.43 0.00 1.52
1956 4319 5.554822 TTAGTTTTCGAGGCGCATTAAAT 57.445 34.783 10.83 0.00 0.00 1.40
1957 4320 4.016113 AGTTTTCGAGGCGCATTAAATC 57.984 40.909 10.83 6.75 0.00 2.17
1958 4321 3.689649 AGTTTTCGAGGCGCATTAAATCT 59.310 39.130 10.83 8.92 0.00 2.40
1959 4322 4.156008 AGTTTTCGAGGCGCATTAAATCTT 59.844 37.500 10.83 0.00 0.00 2.40
1960 4323 4.695217 TTTCGAGGCGCATTAAATCTTT 57.305 36.364 10.83 0.00 0.00 2.52
1961 4324 3.673746 TCGAGGCGCATTAAATCTTTG 57.326 42.857 10.83 0.00 0.00 2.77
1962 4325 2.111756 CGAGGCGCATTAAATCTTTGC 58.888 47.619 10.83 0.00 0.00 3.68
1963 4326 2.477694 CGAGGCGCATTAAATCTTTGCA 60.478 45.455 10.83 0.00 36.15 4.08
1964 4327 3.709987 GAGGCGCATTAAATCTTTGCAT 58.290 40.909 10.83 0.00 36.15 3.96
1965 4328 3.450578 AGGCGCATTAAATCTTTGCATG 58.549 40.909 10.83 0.00 36.15 4.06
1966 4329 2.033492 GGCGCATTAAATCTTTGCATGC 60.033 45.455 11.82 11.82 36.15 4.06
1967 4330 2.604011 GCGCATTAAATCTTTGCATGCA 59.396 40.909 18.46 18.46 37.72 3.96
1968 4331 3.062369 GCGCATTAAATCTTTGCATGCAA 59.938 39.130 28.80 28.80 37.72 4.08
1969 4332 4.780946 GCGCATTAAATCTTTGCATGCAAG 60.781 41.667 30.25 23.49 37.72 4.01
1970 4333 4.563580 CGCATTAAATCTTTGCATGCAAGA 59.436 37.500 30.25 27.10 37.72 3.02
1971 4334 5.062433 CGCATTAAATCTTTGCATGCAAGAA 59.938 36.000 30.25 22.73 37.72 2.52
1972 4335 6.237996 CGCATTAAATCTTTGCATGCAAGAAT 60.238 34.615 30.25 23.78 37.72 2.40
1973 4336 7.469260 GCATTAAATCTTTGCATGCAAGAATT 58.531 30.769 30.25 27.20 37.75 2.17
1974 4337 8.605746 GCATTAAATCTTTGCATGCAAGAATTA 58.394 29.630 30.25 25.51 37.75 1.40
1979 4342 9.887406 AAATCTTTGCATGCAAGAATTAAAAAG 57.113 25.926 30.25 21.44 37.24 2.27
1980 4343 7.424227 TCTTTGCATGCAAGAATTAAAAAGG 57.576 32.000 30.25 8.67 37.24 3.11
1981 4344 7.215789 TCTTTGCATGCAAGAATTAAAAAGGA 58.784 30.769 30.25 10.87 37.24 3.36
1982 4345 7.714377 TCTTTGCATGCAAGAATTAAAAAGGAA 59.286 29.630 30.25 11.70 37.24 3.36
1983 4346 6.783892 TGCATGCAAGAATTAAAAAGGAAC 57.216 33.333 20.30 0.00 0.00 3.62
1984 4347 6.286758 TGCATGCAAGAATTAAAAAGGAACA 58.713 32.000 20.30 0.00 0.00 3.18
1985 4348 6.202570 TGCATGCAAGAATTAAAAAGGAACAC 59.797 34.615 20.30 0.00 0.00 3.32
1986 4349 6.202570 GCATGCAAGAATTAAAAAGGAACACA 59.797 34.615 14.21 0.00 0.00 3.72
1987 4350 7.566709 CATGCAAGAATTAAAAAGGAACACAC 58.433 34.615 0.00 0.00 0.00 3.82
1988 4351 6.045955 TGCAAGAATTAAAAAGGAACACACC 58.954 36.000 0.00 0.00 0.00 4.16
1989 4352 6.045955 GCAAGAATTAAAAAGGAACACACCA 58.954 36.000 0.00 0.00 0.00 4.17
1990 4353 6.536941 GCAAGAATTAAAAAGGAACACACCAA 59.463 34.615 0.00 0.00 0.00 3.67
1991 4354 7.226523 GCAAGAATTAAAAAGGAACACACCAAT 59.773 33.333 0.00 0.00 0.00 3.16
1992 4355 8.550376 CAAGAATTAAAAAGGAACACACCAATG 58.450 33.333 0.00 0.00 0.00 2.82
1993 4356 6.705825 AGAATTAAAAAGGAACACACCAATGC 59.294 34.615 0.00 0.00 0.00 3.56
1994 4357 3.902881 AAAAAGGAACACACCAATGCA 57.097 38.095 0.00 0.00 0.00 3.96
1995 4358 4.420522 AAAAAGGAACACACCAATGCAT 57.579 36.364 0.00 0.00 0.00 3.96
1996 4359 3.389925 AAAGGAACACACCAATGCATG 57.610 42.857 0.00 0.00 0.00 4.06
1997 4360 1.999648 AGGAACACACCAATGCATGT 58.000 45.000 0.00 0.00 0.00 3.21
1998 4361 3.153369 AGGAACACACCAATGCATGTA 57.847 42.857 0.00 0.00 0.00 2.29
1999 4362 3.495331 AGGAACACACCAATGCATGTAA 58.505 40.909 0.00 0.00 0.00 2.41
2000 4363 4.088634 AGGAACACACCAATGCATGTAAT 58.911 39.130 0.00 0.00 0.00 1.89
2018 4381 8.809159 CATGTAATGTTCCTACTCATCTAGTG 57.191 38.462 0.00 0.00 40.20 2.74
2019 4382 7.348080 TGTAATGTTCCTACTCATCTAGTGG 57.652 40.000 0.00 0.00 39.39 4.00
2020 4383 4.946478 ATGTTCCTACTCATCTAGTGGC 57.054 45.455 0.00 0.00 39.39 5.01
2021 4384 3.031736 TGTTCCTACTCATCTAGTGGCC 58.968 50.000 0.00 0.00 39.39 5.36
2022 4385 3.031736 GTTCCTACTCATCTAGTGGCCA 58.968 50.000 0.00 0.00 39.39 5.36
2023 4386 3.398318 TCCTACTCATCTAGTGGCCAA 57.602 47.619 7.24 0.00 39.39 4.52
2024 4387 3.300388 TCCTACTCATCTAGTGGCCAAG 58.700 50.000 7.24 1.33 39.39 3.61
2025 4388 2.224161 CCTACTCATCTAGTGGCCAAGC 60.224 54.545 7.24 0.00 39.39 4.01
2026 4389 1.279496 ACTCATCTAGTGGCCAAGCA 58.721 50.000 7.24 0.00 36.93 3.91
2027 4390 1.842562 ACTCATCTAGTGGCCAAGCAT 59.157 47.619 7.24 0.00 36.93 3.79
2028 4391 2.219458 CTCATCTAGTGGCCAAGCATG 58.781 52.381 7.24 7.98 0.00 4.06
2029 4392 0.666913 CATCTAGTGGCCAAGCATGC 59.333 55.000 7.24 10.51 0.00 4.06
2030 4393 0.256752 ATCTAGTGGCCAAGCATGCA 59.743 50.000 21.98 0.00 0.00 3.96
2031 4394 0.256752 TCTAGTGGCCAAGCATGCAT 59.743 50.000 21.98 4.57 0.00 3.96
2032 4395 0.384309 CTAGTGGCCAAGCATGCATG 59.616 55.000 22.70 22.70 0.00 4.06
2048 4411 5.834169 CATGCATGCACTACAATTAATCCA 58.166 37.500 25.37 0.00 0.00 3.41
2049 4412 5.911378 TGCATGCACTACAATTAATCCAA 57.089 34.783 18.46 0.00 0.00 3.53
2050 4413 6.278172 TGCATGCACTACAATTAATCCAAA 57.722 33.333 18.46 0.00 0.00 3.28
2051 4414 6.876155 TGCATGCACTACAATTAATCCAAAT 58.124 32.000 18.46 0.00 0.00 2.32
2052 4415 7.329499 TGCATGCACTACAATTAATCCAAATT 58.671 30.769 18.46 0.00 0.00 1.82
2053 4416 8.473219 TGCATGCACTACAATTAATCCAAATTA 58.527 29.630 18.46 0.00 0.00 1.40
2054 4417 9.311916 GCATGCACTACAATTAATCCAAATTAA 57.688 29.630 14.21 0.00 40.64 1.40
2057 4420 9.311916 TGCACTACAATTAATCCAAATTAATGC 57.688 29.630 4.61 5.15 43.90 3.56
2058 4421 9.311916 GCACTACAATTAATCCAAATTAATGCA 57.688 29.630 0.00 0.00 43.90 3.96
2081 4444 9.515020 TGCAAGAGTTTAATTTGAGTAGTTTTG 57.485 29.630 0.00 0.00 0.00 2.44
2082 4445 9.516314 GCAAGAGTTTAATTTGAGTAGTTTTGT 57.484 29.630 0.00 0.00 0.00 2.83
2093 4456 9.754382 ATTTGAGTAGTTTTGTAAAGTACGAGA 57.246 29.630 10.04 0.97 0.00 4.04
2094 4457 9.754382 TTTGAGTAGTTTTGTAAAGTACGAGAT 57.246 29.630 10.04 0.00 0.00 2.75
2101 4464 9.583765 AGTTTTGTAAAGTACGAGATAGATTCC 57.416 33.333 0.00 0.00 0.00 3.01
2102 4465 9.583765 GTTTTGTAAAGTACGAGATAGATTCCT 57.416 33.333 0.00 0.00 0.00 3.36
2103 4466 9.798994 TTTTGTAAAGTACGAGATAGATTCCTC 57.201 33.333 0.00 0.00 0.00 3.71
2104 4467 7.507733 TGTAAAGTACGAGATAGATTCCTCC 57.492 40.000 0.00 0.00 0.00 4.30
2105 4468 7.058525 TGTAAAGTACGAGATAGATTCCTCCA 58.941 38.462 0.00 0.00 0.00 3.86
2106 4469 6.394025 AAAGTACGAGATAGATTCCTCCAC 57.606 41.667 0.00 0.00 0.00 4.02
2107 4470 5.313280 AGTACGAGATAGATTCCTCCACT 57.687 43.478 0.00 0.00 0.00 4.00
2108 4471 5.310451 AGTACGAGATAGATTCCTCCACTC 58.690 45.833 0.00 0.00 0.00 3.51
2109 4472 4.171878 ACGAGATAGATTCCTCCACTCA 57.828 45.455 0.00 0.00 0.00 3.41
2110 4473 3.886505 ACGAGATAGATTCCTCCACTCAC 59.113 47.826 0.00 0.00 0.00 3.51
2111 4474 3.885901 CGAGATAGATTCCTCCACTCACA 59.114 47.826 0.00 0.00 0.00 3.58
2112 4475 4.339530 CGAGATAGATTCCTCCACTCACAA 59.660 45.833 0.00 0.00 0.00 3.33
2113 4476 5.163509 CGAGATAGATTCCTCCACTCACAAA 60.164 44.000 0.00 0.00 0.00 2.83
2114 4477 6.627087 AGATAGATTCCTCCACTCACAAAA 57.373 37.500 0.00 0.00 0.00 2.44
2115 4478 7.205515 AGATAGATTCCTCCACTCACAAAAT 57.794 36.000 0.00 0.00 0.00 1.82
2116 4479 7.052873 AGATAGATTCCTCCACTCACAAAATG 58.947 38.462 0.00 0.00 0.00 2.32
2117 4480 3.760684 AGATTCCTCCACTCACAAAATGC 59.239 43.478 0.00 0.00 0.00 3.56
2118 4481 1.909700 TCCTCCACTCACAAAATGCC 58.090 50.000 0.00 0.00 0.00 4.40
2119 4482 1.425066 TCCTCCACTCACAAAATGCCT 59.575 47.619 0.00 0.00 0.00 4.75
2120 4483 2.158475 TCCTCCACTCACAAAATGCCTT 60.158 45.455 0.00 0.00 0.00 4.35
2121 4484 2.029649 CCTCCACTCACAAAATGCCTTG 60.030 50.000 0.00 0.00 0.00 3.61
2122 4485 1.962807 TCCACTCACAAAATGCCTTGG 59.037 47.619 0.00 0.00 0.00 3.61
2123 4486 1.688197 CCACTCACAAAATGCCTTGGT 59.312 47.619 0.00 0.00 0.00 3.67
2124 4487 2.102925 CCACTCACAAAATGCCTTGGTT 59.897 45.455 0.00 0.00 0.00 3.67
2125 4488 3.125316 CACTCACAAAATGCCTTGGTTG 58.875 45.455 0.00 0.00 0.00 3.77
2126 4489 3.030291 ACTCACAAAATGCCTTGGTTGA 58.970 40.909 0.00 0.00 0.00 3.18
2127 4490 3.642848 ACTCACAAAATGCCTTGGTTGAT 59.357 39.130 0.00 0.00 0.00 2.57
2128 4491 3.991773 CTCACAAAATGCCTTGGTTGATG 59.008 43.478 0.00 0.00 0.00 3.07
2129 4492 3.640498 TCACAAAATGCCTTGGTTGATGA 59.360 39.130 0.00 0.00 0.00 2.92
2130 4493 3.991773 CACAAAATGCCTTGGTTGATGAG 59.008 43.478 0.00 0.00 0.00 2.90
2131 4494 3.896888 ACAAAATGCCTTGGTTGATGAGA 59.103 39.130 0.00 0.00 0.00 3.27
2132 4495 4.529377 ACAAAATGCCTTGGTTGATGAGAT 59.471 37.500 0.00 0.00 0.00 2.75
2133 4496 5.012354 ACAAAATGCCTTGGTTGATGAGATT 59.988 36.000 0.00 0.00 0.00 2.40
2134 4497 5.750352 AAATGCCTTGGTTGATGAGATTT 57.250 34.783 0.00 0.00 0.00 2.17
2135 4498 4.996788 ATGCCTTGGTTGATGAGATTTC 57.003 40.909 0.00 0.00 0.00 2.17
2136 4499 3.765381 TGCCTTGGTTGATGAGATTTCA 58.235 40.909 0.00 0.00 37.81 2.69
2137 4500 3.760151 TGCCTTGGTTGATGAGATTTCAG 59.240 43.478 0.00 0.00 36.61 3.02
2138 4501 4.012374 GCCTTGGTTGATGAGATTTCAGA 58.988 43.478 0.00 0.00 36.61 3.27
2139 4502 4.643784 GCCTTGGTTGATGAGATTTCAGAT 59.356 41.667 0.00 0.00 36.61 2.90
2140 4503 5.126707 GCCTTGGTTGATGAGATTTCAGATT 59.873 40.000 0.00 0.00 36.61 2.40
2141 4504 6.350780 GCCTTGGTTGATGAGATTTCAGATTT 60.351 38.462 0.00 0.00 36.61 2.17
2142 4505 7.033791 CCTTGGTTGATGAGATTTCAGATTTG 58.966 38.462 0.00 0.00 36.61 2.32
2143 4506 7.094075 CCTTGGTTGATGAGATTTCAGATTTGA 60.094 37.037 0.00 0.00 36.61 2.69
2144 4507 7.387119 TGGTTGATGAGATTTCAGATTTGAG 57.613 36.000 0.00 0.00 36.61 3.02
2145 4508 6.127814 TGGTTGATGAGATTTCAGATTTGAGC 60.128 38.462 0.00 0.00 36.61 4.26
2146 4509 6.264088 GTTGATGAGATTTCAGATTTGAGCC 58.736 40.000 0.00 0.00 36.61 4.70
2147 4510 4.885907 TGATGAGATTTCAGATTTGAGCCC 59.114 41.667 0.00 0.00 36.61 5.19
2148 4511 4.581309 TGAGATTTCAGATTTGAGCCCT 57.419 40.909 0.00 0.00 34.15 5.19
2149 4512 5.698741 TGAGATTTCAGATTTGAGCCCTA 57.301 39.130 0.00 0.00 34.15 3.53
2150 4513 6.257994 TGAGATTTCAGATTTGAGCCCTAT 57.742 37.500 0.00 0.00 34.15 2.57
2151 4514 7.379059 TGAGATTTCAGATTTGAGCCCTATA 57.621 36.000 0.00 0.00 34.15 1.31
2152 4515 7.805163 TGAGATTTCAGATTTGAGCCCTATAA 58.195 34.615 0.00 0.00 34.15 0.98
2153 4516 8.274322 TGAGATTTCAGATTTGAGCCCTATAAA 58.726 33.333 0.00 0.00 34.15 1.40
2154 4517 8.457238 AGATTTCAGATTTGAGCCCTATAAAC 57.543 34.615 0.00 0.00 34.15 2.01
2155 4518 7.503902 AGATTTCAGATTTGAGCCCTATAAACC 59.496 37.037 0.00 0.00 34.15 3.27
2156 4519 4.703897 TCAGATTTGAGCCCTATAAACCG 58.296 43.478 0.00 0.00 0.00 4.44
2157 4520 3.815401 CAGATTTGAGCCCTATAAACCGG 59.185 47.826 0.00 0.00 0.00 5.28
2158 4521 3.714798 AGATTTGAGCCCTATAAACCGGA 59.285 43.478 9.46 0.00 0.00 5.14
2159 4522 4.165372 AGATTTGAGCCCTATAAACCGGAA 59.835 41.667 9.46 0.00 0.00 4.30
2160 4523 4.304048 TTTGAGCCCTATAAACCGGAAA 57.696 40.909 9.46 0.00 0.00 3.13
2161 4524 3.553828 TGAGCCCTATAAACCGGAAAG 57.446 47.619 9.46 0.00 0.00 2.62
2163 4526 2.436911 GAGCCCTATAAACCGGAAAGGA 59.563 50.000 9.46 0.00 45.00 3.36
2164 4527 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
2165 4528 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
2166 4529 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
2507 4870 5.439721 TGATATCATCAGAAGGTTGTTGGG 58.560 41.667 0.00 0.00 33.59 4.12
2662 5025 6.422776 AGTTACTTCCTGCAAATTATCACG 57.577 37.500 0.00 0.00 0.00 4.35
2696 5070 1.812235 AGTCGCATTGCACATGAGAA 58.188 45.000 9.69 0.00 30.10 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.774216 AGAAAAGAGAGAGGGTGATCTGG 59.226 47.826 0.00 0.00 0.00 3.86
1 2 4.141959 GGAGAAAAGAGAGAGGGTGATCTG 60.142 50.000 0.00 0.00 0.00 2.90
2 3 4.030216 GGAGAAAAGAGAGAGGGTGATCT 58.970 47.826 0.00 0.00 0.00 2.75
3 4 3.772025 TGGAGAAAAGAGAGAGGGTGATC 59.228 47.826 0.00 0.00 0.00 2.92
4 5 3.774216 CTGGAGAAAAGAGAGAGGGTGAT 59.226 47.826 0.00 0.00 0.00 3.06
5 6 3.169099 CTGGAGAAAAGAGAGAGGGTGA 58.831 50.000 0.00 0.00 0.00 4.02
6 7 2.354604 GCTGGAGAAAAGAGAGAGGGTG 60.355 54.545 0.00 0.00 0.00 4.61
7 8 1.905894 GCTGGAGAAAAGAGAGAGGGT 59.094 52.381 0.00 0.00 0.00 4.34
8 9 1.209261 GGCTGGAGAAAAGAGAGAGGG 59.791 57.143 0.00 0.00 0.00 4.30
9 10 1.134848 CGGCTGGAGAAAAGAGAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
10 11 1.548269 ACGGCTGGAGAAAAGAGAGAG 59.452 52.381 0.00 0.00 0.00 3.20
11 12 1.273606 CACGGCTGGAGAAAAGAGAGA 59.726 52.381 0.00 0.00 0.00 3.10
12 13 1.674221 CCACGGCTGGAGAAAAGAGAG 60.674 57.143 0.00 0.00 40.55 3.20
13 14 0.321671 CCACGGCTGGAGAAAAGAGA 59.678 55.000 0.00 0.00 40.55 3.10
14 15 1.301677 GCCACGGCTGGAGAAAAGAG 61.302 60.000 0.00 0.00 40.55 2.85
15 16 1.302511 GCCACGGCTGGAGAAAAGA 60.303 57.895 0.00 0.00 40.55 2.52
16 17 2.680913 CGCCACGGCTGGAGAAAAG 61.681 63.158 6.48 0.00 39.70 2.27
17 18 2.668212 CGCCACGGCTGGAGAAAA 60.668 61.111 6.48 0.00 39.70 2.29
18 19 3.621805 TCGCCACGGCTGGAGAAA 61.622 61.111 6.48 0.00 42.91 2.52
19 20 4.373116 GTCGCCACGGCTGGAGAA 62.373 66.667 6.48 0.00 46.83 2.87
20 21 3.931190 TAGTCGCCACGGCTGGAGA 62.931 63.158 6.48 6.30 43.38 3.71
21 22 3.417275 CTAGTCGCCACGGCTGGAG 62.417 68.421 6.48 4.18 42.40 3.86
22 23 3.449227 CTAGTCGCCACGGCTGGA 61.449 66.667 6.48 0.00 42.40 3.86
23 24 4.514577 CCTAGTCGCCACGGCTGG 62.515 72.222 6.48 0.63 43.38 4.85
24 25 1.940883 TAACCTAGTCGCCACGGCTG 61.941 60.000 6.48 0.00 43.38 4.85
25 26 1.664321 CTAACCTAGTCGCCACGGCT 61.664 60.000 6.48 0.00 46.06 5.52
26 27 1.226888 CTAACCTAGTCGCCACGGC 60.227 63.158 0.00 0.00 37.85 5.68
27 28 0.813184 TTCTAACCTAGTCGCCACGG 59.187 55.000 0.00 0.00 0.00 4.94
28 29 2.865343 ATTCTAACCTAGTCGCCACG 57.135 50.000 0.00 0.00 0.00 4.94
29 30 6.047231 ACATTAATTCTAACCTAGTCGCCAC 58.953 40.000 0.00 0.00 0.00 5.01
30 31 6.229936 ACATTAATTCTAACCTAGTCGCCA 57.770 37.500 0.00 0.00 0.00 5.69
31 32 7.432059 ACTACATTAATTCTAACCTAGTCGCC 58.568 38.462 0.00 0.00 0.00 5.54
32 33 7.594386 GGACTACATTAATTCTAACCTAGTCGC 59.406 40.741 0.00 0.00 34.12 5.19
33 34 8.627403 TGGACTACATTAATTCTAACCTAGTCG 58.373 37.037 0.00 0.00 34.12 4.18
50 51 8.415950 TGTAAAATGGTGAAAATGGACTACAT 57.584 30.769 0.00 0.00 43.07 2.29
51 52 7.825331 TGTAAAATGGTGAAAATGGACTACA 57.175 32.000 0.00 0.00 0.00 2.74
52 53 8.303876 ACATGTAAAATGGTGAAAATGGACTAC 58.696 33.333 0.00 0.00 0.00 2.73
53 54 8.303156 CACATGTAAAATGGTGAAAATGGACTA 58.697 33.333 0.00 0.00 33.16 2.59
54 55 7.153985 CACATGTAAAATGGTGAAAATGGACT 58.846 34.615 0.00 0.00 33.16 3.85
55 56 6.368516 CCACATGTAAAATGGTGAAAATGGAC 59.631 38.462 0.00 0.00 33.16 4.02
56 57 6.462500 CCACATGTAAAATGGTGAAAATGGA 58.538 36.000 0.00 0.00 33.16 3.41
57 58 5.122082 GCCACATGTAAAATGGTGAAAATGG 59.878 40.000 0.00 0.00 35.79 3.16
131 132 7.686434 AGGACTCTGTAACCTTTGCTTAATTA 58.314 34.615 0.00 0.00 0.00 1.40
150 151 2.438392 ACCGGAATTATCCCAAGGACTC 59.562 50.000 9.46 0.00 43.37 3.36
172 175 4.096382 CGTTCATTGTTAGCCAAGCCTTAT 59.904 41.667 0.00 0.00 36.25 1.73
173 176 3.438781 CGTTCATTGTTAGCCAAGCCTTA 59.561 43.478 0.00 0.00 36.25 2.69
195 200 7.637709 TGTGCATCGATATTGTAATGTAGTC 57.362 36.000 0.00 0.00 0.00 2.59
228 233 4.034510 GTCCATCATCTTCATTTCGGTGTC 59.965 45.833 0.00 0.00 0.00 3.67
231 236 3.941483 GTGTCCATCATCTTCATTTCGGT 59.059 43.478 0.00 0.00 0.00 4.69
232 237 3.940852 TGTGTCCATCATCTTCATTTCGG 59.059 43.478 0.00 0.00 0.00 4.30
233 238 5.550232 TTGTGTCCATCATCTTCATTTCG 57.450 39.130 0.00 0.00 0.00 3.46
235 240 5.776716 AGGTTTGTGTCCATCATCTTCATTT 59.223 36.000 0.00 0.00 0.00 2.32
258 264 3.056821 TCCTCATCTAAACGTGACACCAG 60.057 47.826 0.00 0.00 0.00 4.00
261 267 4.989168 AGTTTCCTCATCTAAACGTGACAC 59.011 41.667 0.00 0.00 39.90 3.67
283 993 7.812309 AAAAGAAAAAGAAAAACGTCTCCAG 57.188 32.000 0.00 0.00 0.00 3.86
302 1012 9.500785 AGTGTTTCAAAAATTCCTTCAAAAAGA 57.499 25.926 0.00 0.00 34.14 2.52
309 1022 9.750125 ATCAACTAGTGTTTCAAAAATTCCTTC 57.250 29.630 0.00 0.00 33.52 3.46
345 1893 1.660607 CGATTGTCTGTGGTTGATCCG 59.339 52.381 0.00 0.00 39.52 4.18
377 1925 3.056821 TCCCGTCACTCAATCAACTAGTG 60.057 47.826 0.00 0.00 41.58 2.74
378 1926 3.162666 TCCCGTCACTCAATCAACTAGT 58.837 45.455 0.00 0.00 0.00 2.57
379 1927 3.868757 TCCCGTCACTCAATCAACTAG 57.131 47.619 0.00 0.00 0.00 2.57
380 1928 3.830178 TCTTCCCGTCACTCAATCAACTA 59.170 43.478 0.00 0.00 0.00 2.24
381 1929 2.632996 TCTTCCCGTCACTCAATCAACT 59.367 45.455 0.00 0.00 0.00 3.16
382 1930 2.737252 GTCTTCCCGTCACTCAATCAAC 59.263 50.000 0.00 0.00 0.00 3.18
530 2081 2.811317 GCGCTGACCGGACTTCAG 60.811 66.667 9.46 12.81 43.01 3.02
543 2094 2.669240 GGGTAAAGGAGTGGCGCT 59.331 61.111 7.64 0.00 0.00 5.92
742 2359 3.309436 AACACGCTCTATGGCCGCA 62.309 57.895 0.00 0.00 0.00 5.69
932 2558 3.726517 CTTCTTGGCACACGCGGG 61.727 66.667 6.92 6.92 39.29 6.13
944 2570 4.083862 GCGGACCGGCCTCTTCTT 62.084 66.667 17.22 0.00 0.00 2.52
970 2596 4.250305 GGTGTGGACTGTGGGCGT 62.250 66.667 0.00 0.00 0.00 5.68
1063 2689 1.779061 TTTGTCCTCAGGCCTGTCCC 61.779 60.000 31.58 17.91 34.51 4.46
1142 2768 4.765273 TCTGTGAAGCAGTACTTTCACAA 58.235 39.130 29.53 21.64 45.23 3.33
1272 2898 1.688211 GCAGCCTCCTTCTTTCCCT 59.312 57.895 0.00 0.00 0.00 4.20
1274 2900 0.038890 AAGGCAGCCTCCTTCTTTCC 59.961 55.000 16.53 0.00 42.55 3.13
1295 2927 3.944650 TGTGTTATATGCCACCACATCAC 59.055 43.478 4.67 0.00 31.55 3.06
1346 2979 3.484407 AGATGGCATGCCTTGTCTATTC 58.516 45.455 35.53 16.21 36.94 1.75
1731 4094 4.334552 TGATGCCATATGTCACAGTTGTT 58.665 39.130 1.24 0.00 0.00 2.83
1854 4217 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
1855 4218 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
1856 4219 4.444449 CCTTATAAACCGGAAAGGAGGGAG 60.444 50.000 9.46 0.00 45.00 4.30
1857 4220 3.457012 CCTTATAAACCGGAAAGGAGGGA 59.543 47.826 9.46 0.00 45.00 4.20
1858 4221 3.816994 CCTTATAAACCGGAAAGGAGGG 58.183 50.000 9.46 0.00 45.00 4.30
1859 4222 3.211865 GCCTTATAAACCGGAAAGGAGG 58.788 50.000 9.46 9.29 45.00 4.30
1860 4223 2.870411 CGCCTTATAAACCGGAAAGGAG 59.130 50.000 9.46 10.65 45.00 3.69
1861 4224 2.236893 ACGCCTTATAAACCGGAAAGGA 59.763 45.455 9.46 0.00 45.00 3.36
1863 4226 5.996669 AATACGCCTTATAAACCGGAAAG 57.003 39.130 9.46 3.38 0.00 2.62
1864 4227 5.879223 TGAAATACGCCTTATAAACCGGAAA 59.121 36.000 9.46 0.00 0.00 3.13
1865 4228 5.426504 TGAAATACGCCTTATAAACCGGAA 58.573 37.500 9.46 0.00 0.00 4.30
1866 4229 5.021033 TGAAATACGCCTTATAAACCGGA 57.979 39.130 9.46 1.68 0.00 5.14
1867 4230 5.295045 AGTTGAAATACGCCTTATAAACCGG 59.705 40.000 0.00 0.00 0.00 5.28
1868 4231 6.354039 AGTTGAAATACGCCTTATAAACCG 57.646 37.500 3.64 3.64 0.00 4.44
1869 4232 8.975410 AAAAGTTGAAATACGCCTTATAAACC 57.025 30.769 0.00 0.00 0.00 3.27
1892 4255 8.354711 AGCCCTTTAAATTGGAAAAACAAAAA 57.645 26.923 7.84 0.00 33.48 1.94
1893 4256 7.946381 AGCCCTTTAAATTGGAAAAACAAAA 57.054 28.000 7.84 0.00 33.48 2.44
1894 4257 7.946381 AAGCCCTTTAAATTGGAAAAACAAA 57.054 28.000 7.84 0.00 33.48 2.83
1895 4258 9.278978 GATAAGCCCTTTAAATTGGAAAAACAA 57.721 29.630 7.84 0.00 34.41 2.83
1896 4259 8.655901 AGATAAGCCCTTTAAATTGGAAAAACA 58.344 29.630 7.84 0.00 0.00 2.83
1897 4260 9.151471 GAGATAAGCCCTTTAAATTGGAAAAAC 57.849 33.333 7.84 0.00 0.00 2.43
1898 4261 8.318412 GGAGATAAGCCCTTTAAATTGGAAAAA 58.682 33.333 7.84 0.00 0.00 1.94
1899 4262 7.456269 TGGAGATAAGCCCTTTAAATTGGAAAA 59.544 33.333 7.84 0.00 0.00 2.29
1900 4263 6.957020 TGGAGATAAGCCCTTTAAATTGGAAA 59.043 34.615 7.84 0.00 0.00 3.13
1901 4264 6.498538 TGGAGATAAGCCCTTTAAATTGGAA 58.501 36.000 7.84 0.00 0.00 3.53
1902 4265 6.086011 TGGAGATAAGCCCTTTAAATTGGA 57.914 37.500 7.84 0.00 0.00 3.53
1903 4266 6.779539 AGATGGAGATAAGCCCTTTAAATTGG 59.220 38.462 0.00 0.00 0.00 3.16
1904 4267 7.503566 TGAGATGGAGATAAGCCCTTTAAATTG 59.496 37.037 0.00 0.00 0.00 2.32
1905 4268 7.586349 TGAGATGGAGATAAGCCCTTTAAATT 58.414 34.615 0.00 0.00 0.00 1.82
1906 4269 7.154191 TGAGATGGAGATAAGCCCTTTAAAT 57.846 36.000 0.00 0.00 0.00 1.40
1907 4270 6.575244 TGAGATGGAGATAAGCCCTTTAAA 57.425 37.500 0.00 0.00 0.00 1.52
1908 4271 6.770286 ATGAGATGGAGATAAGCCCTTTAA 57.230 37.500 0.00 0.00 0.00 1.52
1909 4272 6.770286 AATGAGATGGAGATAAGCCCTTTA 57.230 37.500 0.00 0.00 0.00 1.85
1910 4273 5.659849 AATGAGATGGAGATAAGCCCTTT 57.340 39.130 0.00 0.00 0.00 3.11
1911 4274 5.659849 AAATGAGATGGAGATAAGCCCTT 57.340 39.130 0.00 0.00 0.00 3.95
1912 4275 5.659849 AAAATGAGATGGAGATAAGCCCT 57.340 39.130 0.00 0.00 0.00 5.19
1913 4276 7.001073 ACTAAAAATGAGATGGAGATAAGCCC 58.999 38.462 0.00 0.00 0.00 5.19
1914 4277 8.457238 AACTAAAAATGAGATGGAGATAAGCC 57.543 34.615 0.00 0.00 0.00 4.35
1918 4281 9.884636 TCGAAAACTAAAAATGAGATGGAGATA 57.115 29.630 0.00 0.00 0.00 1.98
1919 4282 8.792830 TCGAAAACTAAAAATGAGATGGAGAT 57.207 30.769 0.00 0.00 0.00 2.75
1920 4283 7.334421 CCTCGAAAACTAAAAATGAGATGGAGA 59.666 37.037 0.00 0.00 0.00 3.71
1921 4284 7.467623 CCTCGAAAACTAAAAATGAGATGGAG 58.532 38.462 0.00 0.00 0.00 3.86
1922 4285 6.128007 GCCTCGAAAACTAAAAATGAGATGGA 60.128 38.462 0.00 0.00 0.00 3.41
1923 4286 6.030228 GCCTCGAAAACTAAAAATGAGATGG 58.970 40.000 0.00 0.00 0.00 3.51
1924 4287 5.734498 CGCCTCGAAAACTAAAAATGAGATG 59.266 40.000 0.00 0.00 0.00 2.90
1925 4288 5.673818 GCGCCTCGAAAACTAAAAATGAGAT 60.674 40.000 0.00 0.00 0.00 2.75
1926 4289 4.378046 GCGCCTCGAAAACTAAAAATGAGA 60.378 41.667 0.00 0.00 0.00 3.27
1927 4290 3.846335 GCGCCTCGAAAACTAAAAATGAG 59.154 43.478 0.00 0.00 0.00 2.90
1928 4291 3.251245 TGCGCCTCGAAAACTAAAAATGA 59.749 39.130 4.18 0.00 0.00 2.57
1929 4292 3.560503 TGCGCCTCGAAAACTAAAAATG 58.439 40.909 4.18 0.00 0.00 2.32
1930 4293 3.907894 TGCGCCTCGAAAACTAAAAAT 57.092 38.095 4.18 0.00 0.00 1.82
1931 4294 3.907894 ATGCGCCTCGAAAACTAAAAA 57.092 38.095 4.18 0.00 0.00 1.94
1932 4295 3.907894 AATGCGCCTCGAAAACTAAAA 57.092 38.095 4.18 0.00 0.00 1.52
1933 4296 5.359716 TTTAATGCGCCTCGAAAACTAAA 57.640 34.783 4.18 0.00 0.00 1.85
1934 4297 5.353123 AGATTTAATGCGCCTCGAAAACTAA 59.647 36.000 4.18 0.00 0.00 2.24
1935 4298 4.873827 AGATTTAATGCGCCTCGAAAACTA 59.126 37.500 4.18 0.00 0.00 2.24
1936 4299 3.689649 AGATTTAATGCGCCTCGAAAACT 59.310 39.130 4.18 1.61 0.00 2.66
1937 4300 4.016113 AGATTTAATGCGCCTCGAAAAC 57.984 40.909 4.18 0.00 0.00 2.43
1938 4301 4.695217 AAGATTTAATGCGCCTCGAAAA 57.305 36.364 4.18 0.00 0.00 2.29
1939 4302 4.411327 CAAAGATTTAATGCGCCTCGAAA 58.589 39.130 4.18 0.10 0.00 3.46
1940 4303 3.730662 GCAAAGATTTAATGCGCCTCGAA 60.731 43.478 4.18 0.00 0.00 3.71
1941 4304 2.223249 GCAAAGATTTAATGCGCCTCGA 60.223 45.455 4.18 0.00 0.00 4.04
1942 4305 2.111756 GCAAAGATTTAATGCGCCTCG 58.888 47.619 4.18 0.00 0.00 4.63
1943 4306 3.149436 TGCAAAGATTTAATGCGCCTC 57.851 42.857 4.18 0.00 42.91 4.70
1944 4307 3.450578 CATGCAAAGATTTAATGCGCCT 58.549 40.909 4.18 0.00 42.91 5.52
1945 4308 2.033492 GCATGCAAAGATTTAATGCGCC 60.033 45.455 14.21 0.00 42.91 6.53
1946 4309 2.604011 TGCATGCAAAGATTTAATGCGC 59.396 40.909 20.30 0.00 42.91 6.09
1947 4310 4.563580 TCTTGCATGCAAAGATTTAATGCG 59.436 37.500 31.37 16.32 42.91 4.73
1948 4311 6.411630 TTCTTGCATGCAAAGATTTAATGC 57.588 33.333 31.37 13.97 38.70 3.56
1953 4316 9.887406 CTTTTTAATTCTTGCATGCAAAGATTT 57.113 25.926 30.13 27.57 35.33 2.17
1954 4317 8.508875 CCTTTTTAATTCTTGCATGCAAAGATT 58.491 29.630 31.37 29.87 35.33 2.40
1955 4318 7.879160 TCCTTTTTAATTCTTGCATGCAAAGAT 59.121 29.630 31.37 23.83 35.33 2.40
1956 4319 7.215789 TCCTTTTTAATTCTTGCATGCAAAGA 58.784 30.769 31.37 25.58 35.33 2.52
1957 4320 7.424227 TCCTTTTTAATTCTTGCATGCAAAG 57.576 32.000 31.37 23.99 35.33 2.77
1958 4321 7.281774 TGTTCCTTTTTAATTCTTGCATGCAAA 59.718 29.630 31.37 19.79 35.33 3.68
1959 4322 6.765036 TGTTCCTTTTTAATTCTTGCATGCAA 59.235 30.769 30.12 30.12 0.00 4.08
1960 4323 6.202570 GTGTTCCTTTTTAATTCTTGCATGCA 59.797 34.615 18.46 18.46 0.00 3.96
1961 4324 6.202570 TGTGTTCCTTTTTAATTCTTGCATGC 59.797 34.615 11.82 11.82 0.00 4.06
1962 4325 7.307337 GGTGTGTTCCTTTTTAATTCTTGCATG 60.307 37.037 0.00 0.00 0.00 4.06
1963 4326 6.705825 GGTGTGTTCCTTTTTAATTCTTGCAT 59.294 34.615 0.00 0.00 0.00 3.96
1964 4327 6.045955 GGTGTGTTCCTTTTTAATTCTTGCA 58.954 36.000 0.00 0.00 0.00 4.08
1965 4328 6.045955 TGGTGTGTTCCTTTTTAATTCTTGC 58.954 36.000 0.00 0.00 0.00 4.01
1966 4329 8.550376 CATTGGTGTGTTCCTTTTTAATTCTTG 58.450 33.333 0.00 0.00 0.00 3.02
1967 4330 7.226523 GCATTGGTGTGTTCCTTTTTAATTCTT 59.773 33.333 0.00 0.00 0.00 2.52
1968 4331 6.705825 GCATTGGTGTGTTCCTTTTTAATTCT 59.294 34.615 0.00 0.00 0.00 2.40
1969 4332 6.481644 TGCATTGGTGTGTTCCTTTTTAATTC 59.518 34.615 0.00 0.00 0.00 2.17
1970 4333 6.352516 TGCATTGGTGTGTTCCTTTTTAATT 58.647 32.000 0.00 0.00 0.00 1.40
1971 4334 5.923204 TGCATTGGTGTGTTCCTTTTTAAT 58.077 33.333 0.00 0.00 0.00 1.40
1972 4335 5.344743 TGCATTGGTGTGTTCCTTTTTAA 57.655 34.783 0.00 0.00 0.00 1.52
1973 4336 5.163364 ACATGCATTGGTGTGTTCCTTTTTA 60.163 36.000 0.00 0.00 0.00 1.52
1974 4337 3.902881 TGCATTGGTGTGTTCCTTTTT 57.097 38.095 0.00 0.00 0.00 1.94
1975 4338 3.134442 ACATGCATTGGTGTGTTCCTTTT 59.866 39.130 0.00 0.00 0.00 2.27
1976 4339 2.699846 ACATGCATTGGTGTGTTCCTTT 59.300 40.909 0.00 0.00 0.00 3.11
1977 4340 2.318908 ACATGCATTGGTGTGTTCCTT 58.681 42.857 0.00 0.00 0.00 3.36
1978 4341 1.999648 ACATGCATTGGTGTGTTCCT 58.000 45.000 0.00 0.00 0.00 3.36
1979 4342 3.932545 TTACATGCATTGGTGTGTTCC 57.067 42.857 0.00 0.00 0.00 3.62
1980 4343 4.808558 ACATTACATGCATTGGTGTGTTC 58.191 39.130 0.00 0.00 0.00 3.18
1981 4344 4.870123 ACATTACATGCATTGGTGTGTT 57.130 36.364 0.00 0.00 0.00 3.32
1982 4345 4.321899 GGAACATTACATGCATTGGTGTGT 60.322 41.667 0.00 0.63 0.00 3.72
1983 4346 4.082081 AGGAACATTACATGCATTGGTGTG 60.082 41.667 0.00 0.00 0.00 3.82
1984 4347 4.088634 AGGAACATTACATGCATTGGTGT 58.911 39.130 0.00 0.00 0.00 4.16
1985 4348 4.724074 AGGAACATTACATGCATTGGTG 57.276 40.909 0.00 0.00 0.00 4.17
1986 4349 5.509498 AGTAGGAACATTACATGCATTGGT 58.491 37.500 0.00 0.00 0.00 3.67
1987 4350 5.589855 TGAGTAGGAACATTACATGCATTGG 59.410 40.000 0.00 0.00 0.00 3.16
1988 4351 6.682423 TGAGTAGGAACATTACATGCATTG 57.318 37.500 0.00 0.00 0.00 2.82
1989 4352 7.285566 AGATGAGTAGGAACATTACATGCATT 58.714 34.615 0.00 0.00 0.00 3.56
1990 4353 6.835174 AGATGAGTAGGAACATTACATGCAT 58.165 36.000 0.00 0.00 0.00 3.96
1991 4354 6.239217 AGATGAGTAGGAACATTACATGCA 57.761 37.500 0.00 0.00 0.00 3.96
1992 4355 7.383572 CACTAGATGAGTAGGAACATTACATGC 59.616 40.741 0.00 0.00 35.64 4.06
1993 4356 7.869937 CCACTAGATGAGTAGGAACATTACATG 59.130 40.741 0.00 0.00 35.64 3.21
1994 4357 7.472100 GCCACTAGATGAGTAGGAACATTACAT 60.472 40.741 0.00 0.00 35.64 2.29
1995 4358 6.183360 GCCACTAGATGAGTAGGAACATTACA 60.183 42.308 0.00 0.00 35.64 2.41
1996 4359 6.217294 GCCACTAGATGAGTAGGAACATTAC 58.783 44.000 0.00 0.00 35.64 1.89
1997 4360 5.304614 GGCCACTAGATGAGTAGGAACATTA 59.695 44.000 0.00 0.00 35.64 1.90
1998 4361 4.101741 GGCCACTAGATGAGTAGGAACATT 59.898 45.833 0.00 0.00 35.64 2.71
1999 4362 3.643792 GGCCACTAGATGAGTAGGAACAT 59.356 47.826 0.00 0.00 35.64 2.71
2000 4363 3.031736 GGCCACTAGATGAGTAGGAACA 58.968 50.000 0.00 0.00 35.64 3.18
2001 4364 3.031736 TGGCCACTAGATGAGTAGGAAC 58.968 50.000 0.00 0.00 35.64 3.62
2002 4365 3.398318 TGGCCACTAGATGAGTAGGAA 57.602 47.619 0.00 0.00 35.64 3.36
2003 4366 3.300388 CTTGGCCACTAGATGAGTAGGA 58.700 50.000 3.88 0.00 35.64 2.94
2004 4367 2.224161 GCTTGGCCACTAGATGAGTAGG 60.224 54.545 3.88 0.00 35.64 3.18
2005 4368 2.432146 TGCTTGGCCACTAGATGAGTAG 59.568 50.000 3.88 0.00 35.64 2.57
2006 4369 2.466846 TGCTTGGCCACTAGATGAGTA 58.533 47.619 3.88 0.00 35.64 2.59
2007 4370 1.279496 TGCTTGGCCACTAGATGAGT 58.721 50.000 3.88 0.00 39.82 3.41
2008 4371 2.219458 CATGCTTGGCCACTAGATGAG 58.781 52.381 3.88 0.00 0.00 2.90
2009 4372 1.748244 GCATGCTTGGCCACTAGATGA 60.748 52.381 3.88 0.00 0.00 2.92
2010 4373 0.666913 GCATGCTTGGCCACTAGATG 59.333 55.000 3.88 6.90 0.00 2.90
2011 4374 0.256752 TGCATGCTTGGCCACTAGAT 59.743 50.000 20.33 0.00 0.00 1.98
2012 4375 0.256752 ATGCATGCTTGGCCACTAGA 59.743 50.000 20.33 0.00 0.00 2.43
2013 4376 0.384309 CATGCATGCTTGGCCACTAG 59.616 55.000 22.49 1.27 0.00 2.57
2014 4377 2.495809 CATGCATGCTTGGCCACTA 58.504 52.632 22.49 0.00 0.00 2.74
2015 4378 3.294750 CATGCATGCTTGGCCACT 58.705 55.556 22.49 0.00 0.00 4.00
2025 4388 5.834169 TGGATTAATTGTAGTGCATGCATG 58.166 37.500 25.64 22.70 0.00 4.06
2026 4389 6.468333 TTGGATTAATTGTAGTGCATGCAT 57.532 33.333 25.64 15.04 0.00 3.96
2027 4390 5.911378 TTGGATTAATTGTAGTGCATGCA 57.089 34.783 18.46 18.46 0.00 3.96
2028 4391 7.775397 AATTTGGATTAATTGTAGTGCATGC 57.225 32.000 11.82 11.82 0.00 4.06
2031 4394 9.311916 GCATTAATTTGGATTAATTGTAGTGCA 57.688 29.630 2.51 0.00 42.85 4.57
2032 4395 9.311916 TGCATTAATTTGGATTAATTGTAGTGC 57.688 29.630 2.51 4.61 42.85 4.40
2055 4418 9.515020 CAAAACTACTCAAATTAAACTCTTGCA 57.485 29.630 0.00 0.00 0.00 4.08
2056 4419 9.516314 ACAAAACTACTCAAATTAAACTCTTGC 57.484 29.630 0.00 0.00 0.00 4.01
2067 4430 9.754382 TCTCGTACTTTACAAAACTACTCAAAT 57.246 29.630 0.00 0.00 0.00 2.32
2068 4431 9.754382 ATCTCGTACTTTACAAAACTACTCAAA 57.246 29.630 0.00 0.00 0.00 2.69
2075 4438 9.583765 GGAATCTATCTCGTACTTTACAAAACT 57.416 33.333 0.00 0.00 0.00 2.66
2076 4439 9.583765 AGGAATCTATCTCGTACTTTACAAAAC 57.416 33.333 0.00 0.00 0.00 2.43
2077 4440 9.798994 GAGGAATCTATCTCGTACTTTACAAAA 57.201 33.333 0.00 0.00 0.00 2.44
2078 4441 8.411683 GGAGGAATCTATCTCGTACTTTACAAA 58.588 37.037 0.00 0.00 0.00 2.83
2079 4442 7.558807 TGGAGGAATCTATCTCGTACTTTACAA 59.441 37.037 0.00 0.00 0.00 2.41
2080 4443 7.013083 GTGGAGGAATCTATCTCGTACTTTACA 59.987 40.741 0.00 0.00 0.00 2.41
2081 4444 7.229106 AGTGGAGGAATCTATCTCGTACTTTAC 59.771 40.741 0.00 0.00 29.85 2.01
2082 4445 7.288560 AGTGGAGGAATCTATCTCGTACTTTA 58.711 38.462 0.00 0.00 29.85 1.85
2083 4446 6.130569 AGTGGAGGAATCTATCTCGTACTTT 58.869 40.000 0.00 0.00 29.85 2.66
2084 4447 5.697067 AGTGGAGGAATCTATCTCGTACTT 58.303 41.667 0.00 0.00 29.85 2.24
2085 4448 5.163184 TGAGTGGAGGAATCTATCTCGTACT 60.163 44.000 0.00 0.00 33.75 2.73
2086 4449 5.049267 GTGAGTGGAGGAATCTATCTCGTAC 60.049 48.000 0.00 0.00 0.00 3.67
2087 4450 5.064558 GTGAGTGGAGGAATCTATCTCGTA 58.935 45.833 0.00 0.00 0.00 3.43
2088 4451 3.886505 GTGAGTGGAGGAATCTATCTCGT 59.113 47.826 0.00 0.00 0.00 4.18
2089 4452 3.885901 TGTGAGTGGAGGAATCTATCTCG 59.114 47.826 0.00 0.00 0.00 4.04
2090 4453 5.860941 TTGTGAGTGGAGGAATCTATCTC 57.139 43.478 0.00 0.00 0.00 2.75
2091 4454 6.627087 TTTTGTGAGTGGAGGAATCTATCT 57.373 37.500 0.00 0.00 0.00 1.98
2092 4455 6.238593 GCATTTTGTGAGTGGAGGAATCTATC 60.239 42.308 0.00 0.00 0.00 2.08
2093 4456 5.591877 GCATTTTGTGAGTGGAGGAATCTAT 59.408 40.000 0.00 0.00 0.00 1.98
2094 4457 4.943705 GCATTTTGTGAGTGGAGGAATCTA 59.056 41.667 0.00 0.00 0.00 1.98
2095 4458 3.760684 GCATTTTGTGAGTGGAGGAATCT 59.239 43.478 0.00 0.00 0.00 2.40
2096 4459 3.119352 GGCATTTTGTGAGTGGAGGAATC 60.119 47.826 0.00 0.00 0.00 2.52
2097 4460 2.827921 GGCATTTTGTGAGTGGAGGAAT 59.172 45.455 0.00 0.00 0.00 3.01
2098 4461 2.158475 AGGCATTTTGTGAGTGGAGGAA 60.158 45.455 0.00 0.00 0.00 3.36
2099 4462 1.425066 AGGCATTTTGTGAGTGGAGGA 59.575 47.619 0.00 0.00 0.00 3.71
2100 4463 1.915141 AGGCATTTTGTGAGTGGAGG 58.085 50.000 0.00 0.00 0.00 4.30
2101 4464 2.029649 CCAAGGCATTTTGTGAGTGGAG 60.030 50.000 0.00 0.00 30.33 3.86
2102 4465 1.962807 CCAAGGCATTTTGTGAGTGGA 59.037 47.619 0.00 0.00 30.33 4.02
2103 4466 1.688197 ACCAAGGCATTTTGTGAGTGG 59.312 47.619 0.00 0.00 33.29 4.00
2104 4467 3.125316 CAACCAAGGCATTTTGTGAGTG 58.875 45.455 0.00 0.00 0.00 3.51
2105 4468 3.030291 TCAACCAAGGCATTTTGTGAGT 58.970 40.909 0.00 0.00 0.00 3.41
2106 4469 3.731652 TCAACCAAGGCATTTTGTGAG 57.268 42.857 0.00 0.00 0.00 3.51
2107 4470 3.640498 TCATCAACCAAGGCATTTTGTGA 59.360 39.130 0.00 0.00 0.00 3.58
2108 4471 3.991773 CTCATCAACCAAGGCATTTTGTG 59.008 43.478 0.00 0.00 0.00 3.33
2109 4472 3.896888 TCTCATCAACCAAGGCATTTTGT 59.103 39.130 0.00 0.00 0.00 2.83
2110 4473 4.524316 TCTCATCAACCAAGGCATTTTG 57.476 40.909 0.00 0.00 0.00 2.44
2111 4474 5.750352 AATCTCATCAACCAAGGCATTTT 57.250 34.783 0.00 0.00 0.00 1.82
2112 4475 5.246656 TGAAATCTCATCAACCAAGGCATTT 59.753 36.000 0.00 0.00 0.00 2.32
2113 4476 4.773674 TGAAATCTCATCAACCAAGGCATT 59.226 37.500 0.00 0.00 0.00 3.56
2114 4477 4.346730 TGAAATCTCATCAACCAAGGCAT 58.653 39.130 0.00 0.00 0.00 4.40
2115 4478 3.760151 CTGAAATCTCATCAACCAAGGCA 59.240 43.478 0.00 0.00 0.00 4.75
2116 4479 4.012374 TCTGAAATCTCATCAACCAAGGC 58.988 43.478 0.00 0.00 0.00 4.35
2117 4480 6.770746 AATCTGAAATCTCATCAACCAAGG 57.229 37.500 0.00 0.00 0.00 3.61
2118 4481 7.823665 TCAAATCTGAAATCTCATCAACCAAG 58.176 34.615 0.00 0.00 0.00 3.61
2119 4482 7.576287 GCTCAAATCTGAAATCTCATCAACCAA 60.576 37.037 0.00 0.00 0.00 3.67
2120 4483 6.127814 GCTCAAATCTGAAATCTCATCAACCA 60.128 38.462 0.00 0.00 0.00 3.67
2121 4484 6.264088 GCTCAAATCTGAAATCTCATCAACC 58.736 40.000 0.00 0.00 0.00 3.77
2122 4485 6.264088 GGCTCAAATCTGAAATCTCATCAAC 58.736 40.000 0.00 0.00 0.00 3.18
2123 4486 5.359009 GGGCTCAAATCTGAAATCTCATCAA 59.641 40.000 0.00 0.00 0.00 2.57
2124 4487 4.885907 GGGCTCAAATCTGAAATCTCATCA 59.114 41.667 0.00 0.00 0.00 3.07
2125 4488 5.131784 AGGGCTCAAATCTGAAATCTCATC 58.868 41.667 0.00 0.00 0.00 2.92
2126 4489 5.126699 AGGGCTCAAATCTGAAATCTCAT 57.873 39.130 0.00 0.00 0.00 2.90
2127 4490 4.581309 AGGGCTCAAATCTGAAATCTCA 57.419 40.909 0.00 0.00 0.00 3.27
2128 4491 8.563732 GTTTATAGGGCTCAAATCTGAAATCTC 58.436 37.037 0.00 0.00 0.00 2.75
2129 4492 7.503902 GGTTTATAGGGCTCAAATCTGAAATCT 59.496 37.037 0.00 0.00 0.00 2.40
2130 4493 7.520614 CGGTTTATAGGGCTCAAATCTGAAATC 60.521 40.741 0.00 0.00 0.00 2.17
2131 4494 6.263168 CGGTTTATAGGGCTCAAATCTGAAAT 59.737 38.462 0.00 0.00 0.00 2.17
2132 4495 5.588648 CGGTTTATAGGGCTCAAATCTGAAA 59.411 40.000 0.00 0.00 0.00 2.69
2133 4496 5.123227 CGGTTTATAGGGCTCAAATCTGAA 58.877 41.667 0.00 0.00 0.00 3.02
2134 4497 4.444306 CCGGTTTATAGGGCTCAAATCTGA 60.444 45.833 0.00 0.00 0.00 3.27
2135 4498 3.815401 CCGGTTTATAGGGCTCAAATCTG 59.185 47.826 0.00 0.00 0.00 2.90
2136 4499 3.714798 TCCGGTTTATAGGGCTCAAATCT 59.285 43.478 0.00 0.00 0.00 2.40
2137 4500 4.081322 TCCGGTTTATAGGGCTCAAATC 57.919 45.455 0.00 0.00 0.00 2.17
2138 4501 4.513406 TTCCGGTTTATAGGGCTCAAAT 57.487 40.909 0.00 0.00 0.00 2.32
2139 4502 4.266714 CTTTCCGGTTTATAGGGCTCAAA 58.733 43.478 0.00 0.00 0.00 2.69
2140 4503 3.371166 CCTTTCCGGTTTATAGGGCTCAA 60.371 47.826 0.00 0.00 0.00 3.02
2141 4504 2.171870 CCTTTCCGGTTTATAGGGCTCA 59.828 50.000 0.00 0.00 0.00 4.26
2142 4505 2.436911 TCCTTTCCGGTTTATAGGGCTC 59.563 50.000 0.00 0.00 0.00 4.70
2143 4506 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
2144 4507 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
2145 4508 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
2146 4509 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
2147 4510 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
2148 4511 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
2149 4512 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
2150 4513 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
2151 4514 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
2152 4515 2.265526 ATACTCCCTCCTTTCCGGTT 57.734 50.000 0.00 0.00 0.00 4.44
2153 4516 3.409804 TTATACTCCCTCCTTTCCGGT 57.590 47.619 0.00 0.00 0.00 5.28
2154 4517 4.593634 AGAATTATACTCCCTCCTTTCCGG 59.406 45.833 0.00 0.00 0.00 5.14
2155 4518 5.810080 AGAATTATACTCCCTCCTTTCCG 57.190 43.478 0.00 0.00 0.00 4.30
2156 4519 8.493787 TCTAAGAATTATACTCCCTCCTTTCC 57.506 38.462 0.00 0.00 0.00 3.13
2157 4520 8.590204 CCTCTAAGAATTATACTCCCTCCTTTC 58.410 40.741 0.00 0.00 0.00 2.62
2158 4521 8.297646 TCCTCTAAGAATTATACTCCCTCCTTT 58.702 37.037 0.00 0.00 0.00 3.11
2159 4522 7.731235 GTCCTCTAAGAATTATACTCCCTCCTT 59.269 40.741 0.00 0.00 0.00 3.36
2160 4523 7.075785 AGTCCTCTAAGAATTATACTCCCTCCT 59.924 40.741 0.00 0.00 0.00 3.69
2161 4524 7.243091 AGTCCTCTAAGAATTATACTCCCTCC 58.757 42.308 0.00 0.00 0.00 4.30
2162 4525 8.715190 AAGTCCTCTAAGAATTATACTCCCTC 57.285 38.462 0.00 0.00 0.00 4.30
2163 4526 8.929487 CAAAGTCCTCTAAGAATTATACTCCCT 58.071 37.037 0.00 0.00 0.00 4.20
2164 4527 8.706521 ACAAAGTCCTCTAAGAATTATACTCCC 58.293 37.037 0.00 0.00 0.00 4.30
2215 4578 3.947834 CCTAATTCCTGGAACATGGTGAC 59.052 47.826 12.11 0.00 38.20 3.67
2507 4870 2.353109 GCCTTGGCAATCTCACCTTTTC 60.353 50.000 6.79 0.00 0.00 2.29
2662 5025 6.414987 GCAATGCGACTAAATCCATCTAAAAC 59.585 38.462 0.00 0.00 0.00 2.43
2696 5070 4.820894 ACCGTGCTTTCTTAGGAGTTAT 57.179 40.909 0.00 0.00 0.00 1.89
2846 5235 4.706476 TGCCCATCGAAGATCAAAAGATTT 59.294 37.500 0.00 0.00 45.12 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.