Multiple sequence alignment - TraesCS1B01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G073100 chr1B 100.000 3821 0 0 1 3821 57219917 57223737 0.000000e+00 7057.0
1 TraesCS1B01G073100 chr1B 85.239 2493 333 20 330 2796 57015852 57018335 0.000000e+00 2532.0
2 TraesCS1B01G073100 chr1B 82.979 2779 392 50 377 3105 56501793 56499046 0.000000e+00 2436.0
3 TraesCS1B01G073100 chr1B 84.865 2438 340 14 378 2789 57130228 57132662 0.000000e+00 2431.0
4 TraesCS1B01G073100 chr1B 87.554 2097 242 13 1001 3083 57137689 57139780 0.000000e+00 2409.0
5 TraesCS1B01G073100 chr1B 82.526 2724 416 35 360 3037 56493635 56490926 0.000000e+00 2338.0
6 TraesCS1B01G073100 chr1B 87.774 1914 184 22 328 2216 57103660 57105548 0.000000e+00 2193.0
7 TraesCS1B01G073100 chr1B 83.275 1716 259 13 341 2035 57009410 57011118 0.000000e+00 1554.0
8 TraesCS1B01G073100 chr1B 88.838 439 32 10 3210 3632 57108374 57108811 1.220000e-144 523.0
9 TraesCS1B01G073100 chr1B 98.214 112 2 0 3676 3787 57108820 57108931 3.010000e-46 196.0
10 TraesCS1B01G073100 chr1B 91.026 78 7 0 3679 3756 57143424 57143501 5.220000e-19 106.0
11 TraesCS1B01G073100 chr1B 100.000 38 0 0 3646 3683 57223463 57223500 1.900000e-08 71.3
12 TraesCS1B01G073100 chr1B 100.000 38 0 0 3547 3584 57223562 57223599 1.900000e-08 71.3
13 TraesCS1B01G073100 chr1A 89.304 3291 295 21 389 3632 36635559 36638839 0.000000e+00 4074.0
14 TraesCS1B01G073100 chr1A 84.880 2467 339 23 337 2775 36613142 36615602 0.000000e+00 2459.0
15 TraesCS1B01G073100 chr1A 83.656 2533 360 30 553 3039 36174647 36172123 0.000000e+00 2335.0
16 TraesCS1B01G073100 chr1A 83.443 2440 361 28 382 2792 37505325 37502900 0.000000e+00 2228.0
17 TraesCS1B01G073100 chr1A 80.565 1698 289 31 1320 2991 37511366 37509684 0.000000e+00 1269.0
18 TraesCS1B01G073100 chr1A 91.275 149 8 3 3676 3821 36638848 36638994 8.370000e-47 198.0
19 TraesCS1B01G073100 chr1D 86.208 2458 309 16 354 2790 37423821 37426269 0.000000e+00 2634.0
20 TraesCS1B01G073100 chr1D 89.800 2000 192 10 937 2926 37446563 37448560 0.000000e+00 2553.0
21 TraesCS1B01G073100 chr1D 83.538 2764 397 34 330 3045 36618246 36615493 0.000000e+00 2531.0
22 TraesCS1B01G073100 chr1D 83.333 2502 366 35 330 2790 38368086 38365595 0.000000e+00 2263.0
23 TraesCS1B01G073100 chr1D 86.690 571 56 10 378 929 37442765 37443334 1.950000e-172 616.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G073100 chr1B 57219917 57223737 3820 False 2399.866667 7057 100.000000 1 3821 3 chr1B.!!$F6 3820
1 TraesCS1B01G073100 chr1B 57015852 57018335 2483 False 2532.000000 2532 85.239000 330 2796 1 chr1B.!!$F2 2466
2 TraesCS1B01G073100 chr1B 56499046 56501793 2747 True 2436.000000 2436 82.979000 377 3105 1 chr1B.!!$R2 2728
3 TraesCS1B01G073100 chr1B 57130228 57132662 2434 False 2431.000000 2431 84.865000 378 2789 1 chr1B.!!$F3 2411
4 TraesCS1B01G073100 chr1B 56490926 56493635 2709 True 2338.000000 2338 82.526000 360 3037 1 chr1B.!!$R1 2677
5 TraesCS1B01G073100 chr1B 57009410 57011118 1708 False 1554.000000 1554 83.275000 341 2035 1 chr1B.!!$F1 1694
6 TraesCS1B01G073100 chr1B 57137689 57143501 5812 False 1257.500000 2409 89.290000 1001 3756 2 chr1B.!!$F5 2755
7 TraesCS1B01G073100 chr1B 57103660 57108931 5271 False 970.666667 2193 91.608667 328 3787 3 chr1B.!!$F4 3459
8 TraesCS1B01G073100 chr1A 36613142 36615602 2460 False 2459.000000 2459 84.880000 337 2775 1 chr1A.!!$F1 2438
9 TraesCS1B01G073100 chr1A 36172123 36174647 2524 True 2335.000000 2335 83.656000 553 3039 1 chr1A.!!$R1 2486
10 TraesCS1B01G073100 chr1A 37502900 37505325 2425 True 2228.000000 2228 83.443000 382 2792 1 chr1A.!!$R2 2410
11 TraesCS1B01G073100 chr1A 36635559 36638994 3435 False 2136.000000 4074 90.289500 389 3821 2 chr1A.!!$F2 3432
12 TraesCS1B01G073100 chr1A 37509684 37511366 1682 True 1269.000000 1269 80.565000 1320 2991 1 chr1A.!!$R3 1671
13 TraesCS1B01G073100 chr1D 37423821 37426269 2448 False 2634.000000 2634 86.208000 354 2790 1 chr1D.!!$F1 2436
14 TraesCS1B01G073100 chr1D 36615493 36618246 2753 True 2531.000000 2531 83.538000 330 3045 1 chr1D.!!$R1 2715
15 TraesCS1B01G073100 chr1D 38365595 38368086 2491 True 2263.000000 2263 83.333000 330 2790 1 chr1D.!!$R2 2460
16 TraesCS1B01G073100 chr1D 37442765 37448560 5795 False 1584.500000 2553 88.245000 378 2926 2 chr1D.!!$F2 2548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.106918 ACACCACACCACACCGATTT 60.107 50.0 0.00 0.0 0.00 2.17 F
1168 4457 0.610232 GGCAATGGACAAGGCAGAGT 60.610 55.0 0.00 0.0 0.00 3.24 F
1267 4556 0.623723 ATCTGGGCGCTTAAAAGGGA 59.376 50.0 7.64 0.0 41.06 4.20 F
2429 7699 0.179124 CGGAGAAGAGAAGAAGCCGG 60.179 60.0 0.00 0.0 34.08 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 5480 0.030638 CCAAGCACGAAACAACCCTG 59.969 55.0 0.00 0.0 0.0 4.45 R
2184 5481 0.106918 TCCAAGCACGAAACAACCCT 60.107 50.0 0.00 0.0 0.0 4.34 R
2627 7897 1.402787 ATAATTTCCGGCCTTGGCAG 58.597 50.0 14.04 9.4 0.0 4.85 R
3669 12152 0.613777 ACGGGCTAAAGGAAGTGAGG 59.386 55.0 0.00 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.539582 GTATGACTTACATCGGTTGCAAA 57.460 39.130 0.00 0.00 40.07 3.68
23 24 6.119144 GTATGACTTACATCGGTTGCAAAT 57.881 37.500 0.00 0.00 40.07 2.32
24 25 5.643379 ATGACTTACATCGGTTGCAAATT 57.357 34.783 0.00 0.00 33.46 1.82
25 26 5.446143 TGACTTACATCGGTTGCAAATTT 57.554 34.783 0.00 0.00 0.00 1.82
26 27 5.218885 TGACTTACATCGGTTGCAAATTTG 58.781 37.500 14.03 14.03 0.00 2.32
27 28 4.555262 ACTTACATCGGTTGCAAATTTGG 58.445 39.130 19.47 2.88 0.00 3.28
28 29 4.279671 ACTTACATCGGTTGCAAATTTGGA 59.720 37.500 19.47 14.42 0.00 3.53
29 30 3.959535 ACATCGGTTGCAAATTTGGAT 57.040 38.095 19.47 10.11 0.00 3.41
30 31 6.151985 ACTTACATCGGTTGCAAATTTGGATA 59.848 34.615 19.47 5.54 0.00 2.59
31 32 5.398603 ACATCGGTTGCAAATTTGGATAA 57.601 34.783 19.47 0.00 0.00 1.75
32 33 5.167845 ACATCGGTTGCAAATTTGGATAAC 58.832 37.500 19.47 12.33 0.00 1.89
33 34 3.827625 TCGGTTGCAAATTTGGATAACG 58.172 40.909 19.47 19.06 0.00 3.18
34 35 3.253677 TCGGTTGCAAATTTGGATAACGT 59.746 39.130 19.47 0.00 0.00 3.99
35 36 3.984633 CGGTTGCAAATTTGGATAACGTT 59.015 39.130 19.47 5.88 0.00 3.99
36 37 4.446051 CGGTTGCAAATTTGGATAACGTTT 59.554 37.500 19.47 0.00 0.00 3.60
37 38 5.611412 CGGTTGCAAATTTGGATAACGTTTG 60.611 40.000 19.47 0.00 33.98 2.93
38 39 5.333721 GGTTGCAAATTTGGATAACGTTTGG 60.334 40.000 19.47 0.00 32.08 3.28
39 40 4.950050 TGCAAATTTGGATAACGTTTGGT 58.050 34.783 19.47 0.00 32.08 3.67
40 41 5.360591 TGCAAATTTGGATAACGTTTGGTT 58.639 33.333 19.47 0.00 42.75 3.67
41 42 5.235186 TGCAAATTTGGATAACGTTTGGTTG 59.765 36.000 19.47 1.91 39.75 3.77
42 43 5.235401 GCAAATTTGGATAACGTTTGGTTGT 59.765 36.000 19.47 0.00 39.75 3.32
43 44 6.421202 GCAAATTTGGATAACGTTTGGTTGTA 59.579 34.615 19.47 0.00 39.75 2.41
44 45 7.042658 GCAAATTTGGATAACGTTTGGTTGTAA 60.043 33.333 19.47 0.00 39.75 2.41
45 46 8.818057 CAAATTTGGATAACGTTTGGTTGTAAA 58.182 29.630 5.91 0.51 39.75 2.01
46 47 9.549078 AAATTTGGATAACGTTTGGTTGTAAAT 57.451 25.926 5.91 2.84 39.75 1.40
47 48 8.751302 ATTTGGATAACGTTTGGTTGTAAATC 57.249 30.769 5.91 0.00 39.75 2.17
48 49 6.879276 TGGATAACGTTTGGTTGTAAATCA 57.121 33.333 5.91 0.00 39.75 2.57
49 50 7.273320 TGGATAACGTTTGGTTGTAAATCAA 57.727 32.000 5.91 0.00 46.96 2.57
64 65 8.970859 TTGTAAATCAACCAAAATGGATGTTT 57.029 26.923 2.85 7.61 40.96 2.83
65 66 8.375608 TGTAAATCAACCAAAATGGATGTTTG 57.624 30.769 2.85 0.00 40.96 2.93
74 75 5.468592 CAAAATGGATGTTTGGACGATTCA 58.531 37.500 0.00 0.00 33.25 2.57
75 76 5.920193 AAATGGATGTTTGGACGATTCAT 57.080 34.783 0.00 0.00 0.00 2.57
76 77 7.257003 CAAAATGGATGTTTGGACGATTCATA 58.743 34.615 0.00 0.00 33.25 2.15
77 78 7.403312 AAATGGATGTTTGGACGATTCATAA 57.597 32.000 0.00 0.00 0.00 1.90
78 79 7.403312 AATGGATGTTTGGACGATTCATAAA 57.597 32.000 0.00 0.00 0.00 1.40
79 80 6.435430 TGGATGTTTGGACGATTCATAAAG 57.565 37.500 0.00 0.00 0.00 1.85
80 81 5.943416 TGGATGTTTGGACGATTCATAAAGT 59.057 36.000 0.00 0.00 0.00 2.66
81 82 6.432783 TGGATGTTTGGACGATTCATAAAGTT 59.567 34.615 0.00 0.00 0.00 2.66
82 83 6.967199 GGATGTTTGGACGATTCATAAAGTTC 59.033 38.462 0.00 0.00 0.00 3.01
83 84 6.869315 TGTTTGGACGATTCATAAAGTTCA 57.131 33.333 0.00 0.00 0.00 3.18
84 85 6.898041 TGTTTGGACGATTCATAAAGTTCAG 58.102 36.000 0.00 0.00 0.00 3.02
85 86 6.072728 TGTTTGGACGATTCATAAAGTTCAGG 60.073 38.462 0.00 0.00 0.00 3.86
86 87 4.513442 TGGACGATTCATAAAGTTCAGGG 58.487 43.478 0.00 0.00 0.00 4.45
87 88 4.019681 TGGACGATTCATAAAGTTCAGGGT 60.020 41.667 0.00 0.00 0.00 4.34
88 89 4.332819 GGACGATTCATAAAGTTCAGGGTG 59.667 45.833 0.00 0.00 0.00 4.61
89 90 3.689649 ACGATTCATAAAGTTCAGGGTGC 59.310 43.478 0.00 0.00 0.00 5.01
90 91 3.065371 CGATTCATAAAGTTCAGGGTGCC 59.935 47.826 0.00 0.00 0.00 5.01
91 92 3.517296 TTCATAAAGTTCAGGGTGCCA 57.483 42.857 0.00 0.00 0.00 4.92
92 93 3.517296 TCATAAAGTTCAGGGTGCCAA 57.483 42.857 0.00 0.00 0.00 4.52
93 94 3.153919 TCATAAAGTTCAGGGTGCCAAC 58.846 45.455 0.00 0.00 0.00 3.77
94 95 3.157087 CATAAAGTTCAGGGTGCCAACT 58.843 45.455 0.00 0.00 31.48 3.16
95 96 1.402787 AAAGTTCAGGGTGCCAACTG 58.597 50.000 0.00 0.00 36.07 3.16
96 97 0.550914 AAGTTCAGGGTGCCAACTGA 59.449 50.000 0.00 0.00 41.63 3.41
99 100 3.419793 TCAGGGTGCCAACTGAAAG 57.580 52.632 0.00 0.00 40.51 2.62
100 101 0.843309 TCAGGGTGCCAACTGAAAGA 59.157 50.000 0.00 0.00 40.51 2.52
101 102 1.214175 TCAGGGTGCCAACTGAAAGAA 59.786 47.619 0.00 0.00 40.51 2.52
102 103 2.031120 CAGGGTGCCAACTGAAAGAAA 58.969 47.619 0.00 0.00 36.86 2.52
103 104 2.031870 AGGGTGCCAACTGAAAGAAAC 58.968 47.619 0.00 0.00 37.43 2.78
104 105 1.068588 GGGTGCCAACTGAAAGAAACC 59.931 52.381 0.00 0.00 37.43 3.27
105 106 1.754226 GGTGCCAACTGAAAGAAACCA 59.246 47.619 0.00 0.00 37.43 3.67
106 107 2.223805 GGTGCCAACTGAAAGAAACCAG 60.224 50.000 0.00 0.00 37.43 4.00
107 108 1.408702 TGCCAACTGAAAGAAACCAGC 59.591 47.619 0.00 0.00 37.43 4.85
108 109 1.408702 GCCAACTGAAAGAAACCAGCA 59.591 47.619 0.00 0.00 37.43 4.41
109 110 2.159114 GCCAACTGAAAGAAACCAGCAA 60.159 45.455 0.00 0.00 37.43 3.91
110 111 3.678529 GCCAACTGAAAGAAACCAGCAAA 60.679 43.478 0.00 0.00 37.43 3.68
111 112 4.502962 CCAACTGAAAGAAACCAGCAAAA 58.497 39.130 0.00 0.00 37.43 2.44
112 113 4.329801 CCAACTGAAAGAAACCAGCAAAAC 59.670 41.667 0.00 0.00 37.43 2.43
113 114 4.799564 ACTGAAAGAAACCAGCAAAACA 57.200 36.364 0.00 0.00 37.43 2.83
114 115 4.494484 ACTGAAAGAAACCAGCAAAACAC 58.506 39.130 0.00 0.00 37.43 3.32
115 116 4.220602 ACTGAAAGAAACCAGCAAAACACT 59.779 37.500 0.00 0.00 37.43 3.55
116 117 4.743493 TGAAAGAAACCAGCAAAACACTC 58.257 39.130 0.00 0.00 0.00 3.51
117 118 3.420839 AAGAAACCAGCAAAACACTCG 57.579 42.857 0.00 0.00 0.00 4.18
118 119 2.365582 AGAAACCAGCAAAACACTCGT 58.634 42.857 0.00 0.00 0.00 4.18
119 120 2.354821 AGAAACCAGCAAAACACTCGTC 59.645 45.455 0.00 0.00 0.00 4.20
120 121 1.745232 AACCAGCAAAACACTCGTCA 58.255 45.000 0.00 0.00 0.00 4.35
121 122 1.299541 ACCAGCAAAACACTCGTCAG 58.700 50.000 0.00 0.00 0.00 3.51
122 123 1.299541 CCAGCAAAACACTCGTCAGT 58.700 50.000 0.00 0.00 0.00 3.41
123 124 1.670811 CCAGCAAAACACTCGTCAGTT 59.329 47.619 0.00 0.00 0.00 3.16
124 125 2.539547 CCAGCAAAACACTCGTCAGTTG 60.540 50.000 0.00 0.00 0.00 3.16
125 126 2.095853 CAGCAAAACACTCGTCAGTTGT 59.904 45.455 0.00 0.00 0.00 3.32
126 127 2.095853 AGCAAAACACTCGTCAGTTGTG 59.904 45.455 0.00 0.00 36.32 3.33
127 128 2.095213 GCAAAACACTCGTCAGTTGTGA 59.905 45.455 9.74 0.00 35.46 3.58
140 141 3.504134 TCAGTTGTGACTCTCTCTACTGC 59.496 47.826 9.57 0.00 40.68 4.40
141 142 2.486203 AGTTGTGACTCTCTCTACTGCG 59.514 50.000 0.00 0.00 28.17 5.18
142 143 2.186532 TGTGACTCTCTCTACTGCGT 57.813 50.000 0.00 0.00 0.00 5.24
143 144 3.329929 TGTGACTCTCTCTACTGCGTA 57.670 47.619 0.00 0.00 0.00 4.42
144 145 3.001414 TGTGACTCTCTCTACTGCGTAC 58.999 50.000 0.00 0.00 0.00 3.67
145 146 2.029486 GTGACTCTCTCTACTGCGTACG 59.971 54.545 11.84 11.84 0.00 3.67
146 147 2.094338 TGACTCTCTCTACTGCGTACGA 60.094 50.000 21.65 3.19 0.00 3.43
147 148 2.928757 GACTCTCTCTACTGCGTACGAA 59.071 50.000 21.65 7.90 0.00 3.85
148 149 2.672381 ACTCTCTCTACTGCGTACGAAC 59.328 50.000 21.65 2.16 0.00 3.95
149 150 2.931325 CTCTCTCTACTGCGTACGAACT 59.069 50.000 21.65 0.00 0.00 3.01
150 151 2.928757 TCTCTCTACTGCGTACGAACTC 59.071 50.000 21.65 0.89 0.00 3.01
151 152 2.931325 CTCTCTACTGCGTACGAACTCT 59.069 50.000 21.65 0.00 0.00 3.24
152 153 2.928757 TCTCTACTGCGTACGAACTCTC 59.071 50.000 21.65 0.00 0.00 3.20
153 154 2.005451 TCTACTGCGTACGAACTCTCC 58.995 52.381 21.65 0.00 0.00 3.71
154 155 0.723414 TACTGCGTACGAACTCTCCG 59.277 55.000 21.65 0.00 0.00 4.63
155 156 1.226323 CTGCGTACGAACTCTCCGG 60.226 63.158 21.65 0.00 0.00 5.14
156 157 2.578981 GCGTACGAACTCTCCGGC 60.579 66.667 21.65 0.00 0.00 6.13
157 158 2.101770 CGTACGAACTCTCCGGCC 59.898 66.667 10.44 0.00 0.00 6.13
158 159 2.101770 GTACGAACTCTCCGGCCG 59.898 66.667 21.04 21.04 0.00 6.13
159 160 2.360350 TACGAACTCTCCGGCCGT 60.360 61.111 26.12 3.22 37.27 5.68
160 161 1.973281 TACGAACTCTCCGGCCGTT 60.973 57.895 26.12 11.54 35.05 4.44
161 162 1.926511 TACGAACTCTCCGGCCGTTC 61.927 60.000 26.12 19.06 35.05 3.95
162 163 2.125633 GAACTCTCCGGCCGTTCC 60.126 66.667 26.12 1.68 32.88 3.62
163 164 3.660732 GAACTCTCCGGCCGTTCCC 62.661 68.421 26.12 2.27 32.88 3.97
212 213 4.277593 CGCTCCTCCTGCGCCTAG 62.278 72.222 4.18 0.00 46.72 3.02
236 237 4.332543 TCCGGTGCCCTCCTCCTT 62.333 66.667 0.00 0.00 0.00 3.36
237 238 3.330720 CCGGTGCCCTCCTCCTTT 61.331 66.667 0.00 0.00 0.00 3.11
238 239 1.993391 CCGGTGCCCTCCTCCTTTA 60.993 63.158 0.00 0.00 0.00 1.85
239 240 1.221021 CGGTGCCCTCCTCCTTTAC 59.779 63.158 0.00 0.00 0.00 2.01
240 241 1.608154 GGTGCCCTCCTCCTTTACC 59.392 63.158 0.00 0.00 0.00 2.85
241 242 0.914902 GGTGCCCTCCTCCTTTACCT 60.915 60.000 0.00 0.00 0.00 3.08
242 243 0.542333 GTGCCCTCCTCCTTTACCTC 59.458 60.000 0.00 0.00 0.00 3.85
243 244 0.976073 TGCCCTCCTCCTTTACCTCG 60.976 60.000 0.00 0.00 0.00 4.63
244 245 1.823976 CCCTCCTCCTTTACCTCGC 59.176 63.158 0.00 0.00 0.00 5.03
245 246 1.687297 CCCTCCTCCTTTACCTCGCC 61.687 65.000 0.00 0.00 0.00 5.54
246 247 1.437986 CTCCTCCTTTACCTCGCCG 59.562 63.158 0.00 0.00 0.00 6.46
247 248 1.000521 TCCTCCTTTACCTCGCCGA 60.001 57.895 0.00 0.00 0.00 5.54
248 249 0.396695 TCCTCCTTTACCTCGCCGAT 60.397 55.000 0.00 0.00 0.00 4.18
249 250 0.464452 CCTCCTTTACCTCGCCGATT 59.536 55.000 0.00 0.00 0.00 3.34
250 251 1.134491 CCTCCTTTACCTCGCCGATTT 60.134 52.381 0.00 0.00 0.00 2.17
251 252 2.202566 CTCCTTTACCTCGCCGATTTC 58.797 52.381 0.00 0.00 0.00 2.17
252 253 1.134610 TCCTTTACCTCGCCGATTTCC 60.135 52.381 0.00 0.00 0.00 3.13
253 254 1.406341 CCTTTACCTCGCCGATTTCCA 60.406 52.381 0.00 0.00 0.00 3.53
254 255 1.933853 CTTTACCTCGCCGATTTCCAG 59.066 52.381 0.00 0.00 0.00 3.86
255 256 0.461339 TTACCTCGCCGATTTCCAGC 60.461 55.000 0.00 0.00 0.00 4.85
256 257 2.306255 TACCTCGCCGATTTCCAGCC 62.306 60.000 0.00 0.00 0.00 4.85
257 258 2.187946 CTCGCCGATTTCCAGCCT 59.812 61.111 0.00 0.00 0.00 4.58
258 259 1.884926 CTCGCCGATTTCCAGCCTC 60.885 63.158 0.00 0.00 0.00 4.70
259 260 2.897350 CGCCGATTTCCAGCCTCC 60.897 66.667 0.00 0.00 0.00 4.30
260 261 2.897350 GCCGATTTCCAGCCTCCG 60.897 66.667 0.00 0.00 0.00 4.63
261 262 2.897350 CCGATTTCCAGCCTCCGC 60.897 66.667 0.00 0.00 0.00 5.54
262 263 2.897350 CGATTTCCAGCCTCCGCC 60.897 66.667 0.00 0.00 34.57 6.13
263 264 2.592308 GATTTCCAGCCTCCGCCT 59.408 61.111 0.00 0.00 34.57 5.52
264 265 1.524849 GATTTCCAGCCTCCGCCTC 60.525 63.158 0.00 0.00 34.57 4.70
265 266 2.949705 GATTTCCAGCCTCCGCCTCC 62.950 65.000 0.00 0.00 34.57 4.30
278 279 3.610669 CCTCCGCCGATCCTCCTG 61.611 72.222 0.00 0.00 0.00 3.86
279 280 4.292178 CTCCGCCGATCCTCCTGC 62.292 72.222 0.00 0.00 0.00 4.85
281 282 4.899239 CCGCCGATCCTCCTGCAC 62.899 72.222 0.00 0.00 0.00 4.57
282 283 3.842923 CGCCGATCCTCCTGCACT 61.843 66.667 0.00 0.00 0.00 4.40
283 284 2.107953 GCCGATCCTCCTGCACTC 59.892 66.667 0.00 0.00 0.00 3.51
284 285 2.818132 CCGATCCTCCTGCACTCC 59.182 66.667 0.00 0.00 0.00 3.85
285 286 2.415010 CGATCCTCCTGCACTCCG 59.585 66.667 0.00 0.00 0.00 4.63
286 287 2.818132 GATCCTCCTGCACTCCGG 59.182 66.667 0.00 0.00 0.00 5.14
287 288 2.039624 ATCCTCCTGCACTCCGGT 59.960 61.111 0.00 0.00 0.00 5.28
288 289 2.303549 GATCCTCCTGCACTCCGGTG 62.304 65.000 0.00 0.00 45.53 4.94
289 290 3.314331 CCTCCTGCACTCCGGTGT 61.314 66.667 2.61 2.61 44.65 4.16
290 291 2.743718 CTCCTGCACTCCGGTGTT 59.256 61.111 6.39 0.00 44.65 3.32
291 292 1.374758 CTCCTGCACTCCGGTGTTC 60.375 63.158 6.39 2.42 44.65 3.18
292 293 2.358737 CCTGCACTCCGGTGTTCC 60.359 66.667 6.39 1.83 44.65 3.62
293 294 2.425592 CTGCACTCCGGTGTTCCA 59.574 61.111 6.39 6.52 44.65 3.53
294 295 1.961277 CTGCACTCCGGTGTTCCAC 60.961 63.158 6.39 0.00 44.65 4.02
295 296 2.110213 GCACTCCGGTGTTCCACA 59.890 61.111 6.39 0.00 44.65 4.17
303 304 4.647825 GTGTTCCACACCACACCA 57.352 55.556 0.00 0.00 43.05 4.17
304 305 2.103410 GTGTTCCACACCACACCAC 58.897 57.895 0.00 0.00 43.05 4.16
305 306 0.678366 GTGTTCCACACCACACCACA 60.678 55.000 0.00 0.00 43.05 4.17
306 307 0.678366 TGTTCCACACCACACCACAC 60.678 55.000 0.00 0.00 0.00 3.82
307 308 1.077357 TTCCACACCACACCACACC 60.077 57.895 0.00 0.00 0.00 4.16
308 309 2.878089 TTCCACACCACACCACACCG 62.878 60.000 0.00 0.00 0.00 4.94
309 310 2.188207 CACACCACACCACACCGA 59.812 61.111 0.00 0.00 0.00 4.69
310 311 1.227823 CACACCACACCACACCGAT 60.228 57.895 0.00 0.00 0.00 4.18
311 312 0.817634 CACACCACACCACACCGATT 60.818 55.000 0.00 0.00 0.00 3.34
312 313 0.106918 ACACCACACCACACCGATTT 60.107 50.000 0.00 0.00 0.00 2.17
313 314 1.028905 CACCACACCACACCGATTTT 58.971 50.000 0.00 0.00 0.00 1.82
314 315 2.222886 CACCACACCACACCGATTTTA 58.777 47.619 0.00 0.00 0.00 1.52
315 316 2.225491 CACCACACCACACCGATTTTAG 59.775 50.000 0.00 0.00 0.00 1.85
316 317 2.105134 ACCACACCACACCGATTTTAGA 59.895 45.455 0.00 0.00 0.00 2.10
317 318 3.142951 CCACACCACACCGATTTTAGAA 58.857 45.455 0.00 0.00 0.00 2.10
318 319 3.756434 CCACACCACACCGATTTTAGAAT 59.244 43.478 0.00 0.00 0.00 2.40
319 320 4.217550 CCACACCACACCGATTTTAGAATT 59.782 41.667 0.00 0.00 0.00 2.17
320 321 5.153513 CACACCACACCGATTTTAGAATTG 58.846 41.667 0.00 0.00 0.00 2.32
322 323 3.761752 ACCACACCGATTTTAGAATTGGG 59.238 43.478 15.10 7.80 46.98 4.12
323 324 4.013728 CCACACCGATTTTAGAATTGGGA 58.986 43.478 15.10 0.00 46.98 4.37
324 325 4.096382 CCACACCGATTTTAGAATTGGGAG 59.904 45.833 15.10 10.11 46.98 4.30
325 326 4.096382 CACACCGATTTTAGAATTGGGAGG 59.904 45.833 15.10 7.83 46.98 4.30
326 327 3.632145 CACCGATTTTAGAATTGGGAGGG 59.368 47.826 15.10 0.83 46.98 4.30
339 340 1.305046 GGAGGGAAGTCCGGTCTCA 60.305 63.158 0.00 0.00 41.52 3.27
355 365 0.752009 CTCAGCCTCCGCCACTACTA 60.752 60.000 0.00 0.00 34.57 1.82
371 381 1.518572 CTACACCACGCCGATGTCC 60.519 63.158 0.00 0.00 0.00 4.02
372 382 2.901051 CTACACCACGCCGATGTCCC 62.901 65.000 0.00 0.00 0.00 4.46
373 383 4.386951 CACCACGCCGATGTCCCA 62.387 66.667 0.00 0.00 0.00 4.37
374 384 4.388499 ACCACGCCGATGTCCCAC 62.388 66.667 0.00 0.00 0.00 4.61
376 386 4.735132 CACGCCGATGTCCCACGT 62.735 66.667 0.00 0.00 37.47 4.49
538 577 2.368655 GAATTGTTTCGGCAGGCAAT 57.631 45.000 0.00 0.00 33.55 3.56
749 812 1.476471 CCAGATCTAGGGCTTGCCTTG 60.476 57.143 11.71 2.67 0.00 3.61
904 967 1.022735 GTGCCTGATGCCTTCTCATG 58.977 55.000 0.00 0.00 40.16 3.07
953 4237 4.479993 AGCATGAGTCAGCGGGGC 62.480 66.667 0.00 0.00 35.48 5.80
1020 4309 4.130857 CAATGTGGGCATATAACACGGTA 58.869 43.478 0.00 0.00 37.92 4.02
1131 4420 8.700644 GTGGTGACATATAACTCGATTATTGAC 58.299 37.037 5.73 5.89 46.14 3.18
1168 4457 0.610232 GGCAATGGACAAGGCAGAGT 60.610 55.000 0.00 0.00 0.00 3.24
1226 4515 8.902806 TCAACCCAATGAAGTGACATATAATTC 58.097 33.333 0.00 0.00 0.00 2.17
1265 4554 1.672881 CTCATCTGGGCGCTTAAAAGG 59.327 52.381 7.64 0.00 0.00 3.11
1267 4556 0.623723 ATCTGGGCGCTTAAAAGGGA 59.376 50.000 7.64 0.00 41.06 4.20
1296 4585 9.971922 ACTAAAATGTTCAGAGAAATGAAAAGG 57.028 29.630 0.00 0.00 40.72 3.11
1347 4636 3.003173 TCGTTCCTGGCCTCCCTG 61.003 66.667 3.32 0.00 0.00 4.45
1488 4777 6.954487 TGCTTTGCTGATATGATTGATCTT 57.046 33.333 0.00 0.00 0.00 2.40
1511 4800 9.558396 TCTTTTTAATTCAATGGAAAGCAATGT 57.442 25.926 0.00 0.00 36.43 2.71
1518 4807 6.036300 ATTCAATGGAAAGCAATGTTATTGCG 59.964 34.615 17.72 4.73 41.42 4.85
1591 4886 3.136009 TGATGGATGAAGCTATGCTGG 57.864 47.619 0.00 0.00 39.62 4.85
1748 5044 5.432885 CAACCGGACAAAGTTGTTTATCT 57.567 39.130 9.46 0.00 42.43 1.98
1752 5048 4.755123 CCGGACAAAGTTGTTTATCTGTCT 59.245 41.667 0.00 0.00 42.43 3.41
1771 5067 3.823304 GTCTCTGATTCAGGGTTTTTGCT 59.177 43.478 13.20 0.00 33.01 3.91
1846 5142 4.723309 AGGTATTCCTCATTCTGGCATTC 58.277 43.478 0.00 0.00 40.58 2.67
1871 5167 7.342318 CGTTCTTCGGTTCAGTAATAAAGAA 57.658 36.000 0.00 0.00 35.71 2.52
1908 5204 3.668141 AGGGTTATGGATGCACATGAA 57.332 42.857 0.00 0.00 32.39 2.57
2113 5409 2.366916 AGTGGAAGGATCGATGATGGTC 59.633 50.000 0.54 0.00 0.00 4.02
2115 5411 2.630098 TGGAAGGATCGATGATGGTCTC 59.370 50.000 0.54 0.00 0.00 3.36
2137 5433 4.112634 CGTTCTATTCAGAGAAATGCCGA 58.887 43.478 0.00 0.00 37.20 5.54
2183 5480 5.003160 TGTTACATATGGCATCATACTGGC 58.997 41.667 1.65 0.00 38.53 4.85
2200 5497 1.733526 GCAGGGTTGTTTCGTGCTT 59.266 52.632 0.00 0.00 41.21 3.91
2209 7479 3.462483 TGTTTCGTGCTTGGAGAACTA 57.538 42.857 0.00 0.00 0.00 2.24
2266 7536 3.861840 AGTGGAATAACAGTGGACATCG 58.138 45.455 0.00 0.00 0.00 3.84
2348 7618 3.814316 GCCCTGTTCCAGAAATTAGGTGT 60.814 47.826 0.00 0.00 32.44 4.16
2377 7647 8.791675 TGAGTGTGAAGTTCAATATTGCAATAA 58.208 29.630 22.37 5.76 0.00 1.40
2428 7698 0.811915 TCGGAGAAGAGAAGAAGCCG 59.188 55.000 0.00 0.00 38.68 5.52
2429 7699 0.179124 CGGAGAAGAGAAGAAGCCGG 60.179 60.000 0.00 0.00 34.08 6.13
2627 7897 4.712122 TGTTGTTGGAAAAAGGTGAGAC 57.288 40.909 0.00 0.00 0.00 3.36
2743 8013 1.339097 AGGGAAATATCGGGAGGACG 58.661 55.000 0.00 0.00 0.00 4.79
2877 8169 5.497474 ACCGTATAAGAAATCCAAACTGCT 58.503 37.500 0.00 0.00 0.00 4.24
3059 8382 9.231297 CTGGAAGGTATACAATCTTTTTCAAGA 57.769 33.333 5.01 0.00 43.45 3.02
3196 8519 6.633500 TTACTTTTACTTTGCAGTGCTCAT 57.367 33.333 17.60 1.85 34.06 2.90
3264 8588 2.031163 ACCAAGGCGAGTGCAGAC 59.969 61.111 0.00 0.00 45.35 3.51
3350 10118 2.222027 GACACAAGCTTGGCTACAACT 58.778 47.619 29.18 3.69 38.25 3.16
3402 11885 6.717540 GCTACAAGGAGGATCTATCTACTTCA 59.282 42.308 0.00 0.00 33.73 3.02
3424 11907 5.302568 TCAGGAAACAAATATCCCATGATGC 59.697 40.000 0.00 0.00 36.31 3.91
3632 12115 3.450282 TTCGTCAGGAACCTCAGGA 57.550 52.632 0.00 0.00 0.00 3.86
3635 12118 1.203013 TCGTCAGGAACCTCAGGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
3636 12119 1.827969 CGTCAGGAACCTCAGGAAGAT 59.172 52.381 0.00 0.00 0.00 2.40
3638 12121 3.307059 CGTCAGGAACCTCAGGAAGATTT 60.307 47.826 0.00 0.00 0.00 2.17
3639 12122 4.006319 GTCAGGAACCTCAGGAAGATTTG 58.994 47.826 0.00 0.00 0.00 2.32
3640 12123 3.909995 TCAGGAACCTCAGGAAGATTTGA 59.090 43.478 0.00 0.00 0.00 2.69
3641 12124 4.006319 CAGGAACCTCAGGAAGATTTGAC 58.994 47.826 0.00 0.00 0.00 3.18
3642 12125 3.652869 AGGAACCTCAGGAAGATTTGACA 59.347 43.478 0.00 0.00 0.00 3.58
3643 12126 4.104738 AGGAACCTCAGGAAGATTTGACAA 59.895 41.667 0.00 0.00 0.00 3.18
3644 12127 5.012893 GGAACCTCAGGAAGATTTGACAAT 58.987 41.667 0.00 0.00 0.00 2.71
3645 12128 5.478332 GGAACCTCAGGAAGATTTGACAATT 59.522 40.000 0.00 0.00 0.00 2.32
3646 12129 6.349694 GGAACCTCAGGAAGATTTGACAATTC 60.350 42.308 0.00 2.47 0.00 2.17
3647 12130 5.634118 ACCTCAGGAAGATTTGACAATTCA 58.366 37.500 0.00 0.00 0.00 2.57
3648 12131 6.251471 ACCTCAGGAAGATTTGACAATTCAT 58.749 36.000 0.00 0.98 0.00 2.57
3649 12132 6.152323 ACCTCAGGAAGATTTGACAATTCATG 59.848 38.462 0.00 9.65 35.41 3.07
3651 12134 7.309621 CCTCAGGAAGATTTGACAATTCATGTT 60.310 37.037 12.05 0.00 44.12 2.71
3652 12135 7.954835 TCAGGAAGATTTGACAATTCATGTTT 58.045 30.769 12.05 0.40 44.12 2.83
3653 12136 8.423349 TCAGGAAGATTTGACAATTCATGTTTT 58.577 29.630 12.05 0.11 44.12 2.43
3654 12137 9.695526 CAGGAAGATTTGACAATTCATGTTTTA 57.304 29.630 11.55 0.00 44.12 1.52
3660 12143 9.859427 GATTTGACAATTCATGTTTTATCTCCA 57.141 29.630 5.41 0.00 44.12 3.86
3666 12149 8.938906 ACAATTCATGTTTTATCTCCAAAATGC 58.061 29.630 0.00 0.00 40.06 3.56
3667 12150 8.937884 CAATTCATGTTTTATCTCCAAAATGCA 58.062 29.630 0.00 0.00 30.56 3.96
3668 12151 8.712285 ATTCATGTTTTATCTCCAAAATGCAG 57.288 30.769 0.00 0.00 30.56 4.41
3669 12152 6.101332 TCATGTTTTATCTCCAAAATGCAGC 58.899 36.000 0.00 0.00 30.56 5.25
3670 12153 4.819769 TGTTTTATCTCCAAAATGCAGCC 58.180 39.130 0.00 0.00 30.56 4.85
3671 12154 4.527816 TGTTTTATCTCCAAAATGCAGCCT 59.472 37.500 0.00 0.00 30.56 4.58
3672 12155 4.989279 TTTATCTCCAAAATGCAGCCTC 57.011 40.909 0.00 0.00 0.00 4.70
3673 12156 2.519771 ATCTCCAAAATGCAGCCTCA 57.480 45.000 0.00 0.00 0.00 3.86
3674 12157 1.538047 TCTCCAAAATGCAGCCTCAC 58.462 50.000 0.00 0.00 0.00 3.51
3762 12248 5.641209 TGAATGGAAAGTTTTGTGTGTTTGG 59.359 36.000 0.00 0.00 0.00 3.28
3789 12275 3.552604 TGGTCGCTTGCTTCATTTAAC 57.447 42.857 0.00 0.00 0.00 2.01
3791 12277 2.505866 GTCGCTTGCTTCATTTAACCG 58.494 47.619 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.539582 TTTGCAACCGATGTAAGTCATAC 57.460 39.130 0.00 0.00 36.83 2.39
1 2 6.751514 AATTTGCAACCGATGTAAGTCATA 57.248 33.333 0.00 0.00 36.83 2.15
2 3 5.643379 AATTTGCAACCGATGTAAGTCAT 57.357 34.783 0.00 0.00 39.77 3.06
3 4 5.218885 CAAATTTGCAACCGATGTAAGTCA 58.781 37.500 5.01 0.00 34.97 3.41
4 5 4.621034 CCAAATTTGCAACCGATGTAAGTC 59.379 41.667 12.92 0.00 34.97 3.01
5 6 4.279671 TCCAAATTTGCAACCGATGTAAGT 59.720 37.500 12.92 0.00 34.97 2.24
6 7 4.804108 TCCAAATTTGCAACCGATGTAAG 58.196 39.130 12.92 0.00 34.97 2.34
7 8 4.855715 TCCAAATTTGCAACCGATGTAA 57.144 36.364 12.92 0.00 0.00 2.41
8 9 6.326375 GTTATCCAAATTTGCAACCGATGTA 58.674 36.000 12.92 1.12 0.00 2.29
9 10 3.959535 ATCCAAATTTGCAACCGATGT 57.040 38.095 12.92 0.00 0.00 3.06
10 11 4.265085 CGTTATCCAAATTTGCAACCGATG 59.735 41.667 12.92 0.00 0.00 3.84
11 12 4.082463 ACGTTATCCAAATTTGCAACCGAT 60.082 37.500 12.92 11.44 0.00 4.18
12 13 3.253677 ACGTTATCCAAATTTGCAACCGA 59.746 39.130 12.92 4.70 0.00 4.69
13 14 3.570559 ACGTTATCCAAATTTGCAACCG 58.429 40.909 12.92 11.97 0.00 4.44
14 15 5.333721 CCAAACGTTATCCAAATTTGCAACC 60.334 40.000 12.92 0.00 0.00 3.77
15 16 5.235401 ACCAAACGTTATCCAAATTTGCAAC 59.765 36.000 12.92 13.60 0.00 4.17
16 17 5.360591 ACCAAACGTTATCCAAATTTGCAA 58.639 33.333 12.92 0.00 0.00 4.08
17 18 4.950050 ACCAAACGTTATCCAAATTTGCA 58.050 34.783 12.92 0.00 0.00 4.08
18 19 5.235401 ACAACCAAACGTTATCCAAATTTGC 59.765 36.000 12.92 0.00 31.77 3.68
19 20 6.836577 ACAACCAAACGTTATCCAAATTTG 57.163 33.333 11.40 11.40 31.77 2.32
20 21 8.943909 TTTACAACCAAACGTTATCCAAATTT 57.056 26.923 0.00 0.00 31.77 1.82
21 22 9.198837 GATTTACAACCAAACGTTATCCAAATT 57.801 29.630 0.00 0.00 31.77 1.82
22 23 8.361139 TGATTTACAACCAAACGTTATCCAAAT 58.639 29.630 0.00 1.88 31.77 2.32
23 24 7.713750 TGATTTACAACCAAACGTTATCCAAA 58.286 30.769 0.00 0.00 31.77 3.28
24 25 7.273320 TGATTTACAACCAAACGTTATCCAA 57.727 32.000 0.00 0.00 31.77 3.53
25 26 6.879276 TGATTTACAACCAAACGTTATCCA 57.121 33.333 0.00 0.00 31.77 3.41
39 40 8.834465 CAAACATCCATTTTGGTTGATTTACAA 58.166 29.630 10.73 0.00 43.03 2.41
40 41 7.443575 CCAAACATCCATTTTGGTTGATTTACA 59.556 33.333 10.73 0.00 45.49 2.41
41 42 7.805700 CCAAACATCCATTTTGGTTGATTTAC 58.194 34.615 10.73 0.00 45.49 2.01
42 43 7.976135 CCAAACATCCATTTTGGTTGATTTA 57.024 32.000 10.73 0.00 45.49 1.40
43 44 6.880942 CCAAACATCCATTTTGGTTGATTT 57.119 33.333 10.73 5.82 45.49 2.17
51 52 5.468592 TGAATCGTCCAAACATCCATTTTG 58.531 37.500 0.00 0.00 34.31 2.44
52 53 5.720371 TGAATCGTCCAAACATCCATTTT 57.280 34.783 0.00 0.00 0.00 1.82
53 54 5.920193 ATGAATCGTCCAAACATCCATTT 57.080 34.783 0.00 0.00 0.00 2.32
54 55 7.122650 ACTTTATGAATCGTCCAAACATCCATT 59.877 33.333 0.00 0.00 0.00 3.16
55 56 6.603201 ACTTTATGAATCGTCCAAACATCCAT 59.397 34.615 0.00 0.00 0.00 3.41
56 57 5.943416 ACTTTATGAATCGTCCAAACATCCA 59.057 36.000 0.00 0.00 0.00 3.41
57 58 6.436843 ACTTTATGAATCGTCCAAACATCC 57.563 37.500 0.00 0.00 0.00 3.51
58 59 7.526608 TGAACTTTATGAATCGTCCAAACATC 58.473 34.615 0.00 0.00 0.00 3.06
59 60 7.362056 CCTGAACTTTATGAATCGTCCAAACAT 60.362 37.037 0.00 0.00 0.00 2.71
60 61 6.072728 CCTGAACTTTATGAATCGTCCAAACA 60.073 38.462 0.00 0.00 0.00 2.83
61 62 6.314784 CCTGAACTTTATGAATCGTCCAAAC 58.685 40.000 0.00 0.00 0.00 2.93
62 63 5.414454 CCCTGAACTTTATGAATCGTCCAAA 59.586 40.000 0.00 0.00 0.00 3.28
63 64 4.941263 CCCTGAACTTTATGAATCGTCCAA 59.059 41.667 0.00 0.00 0.00 3.53
64 65 4.019681 ACCCTGAACTTTATGAATCGTCCA 60.020 41.667 0.00 0.00 0.00 4.02
65 66 4.332819 CACCCTGAACTTTATGAATCGTCC 59.667 45.833 0.00 0.00 0.00 4.79
66 67 4.201822 GCACCCTGAACTTTATGAATCGTC 60.202 45.833 0.00 0.00 0.00 4.20
67 68 3.689649 GCACCCTGAACTTTATGAATCGT 59.310 43.478 0.00 0.00 0.00 3.73
68 69 3.065371 GGCACCCTGAACTTTATGAATCG 59.935 47.826 0.00 0.00 0.00 3.34
69 70 4.016444 TGGCACCCTGAACTTTATGAATC 58.984 43.478 0.00 0.00 0.00 2.52
70 71 4.046286 TGGCACCCTGAACTTTATGAAT 57.954 40.909 0.00 0.00 0.00 2.57
71 72 3.517296 TGGCACCCTGAACTTTATGAA 57.483 42.857 0.00 0.00 0.00 2.57
72 73 3.153919 GTTGGCACCCTGAACTTTATGA 58.846 45.455 0.00 0.00 0.00 2.15
73 74 3.057315 CAGTTGGCACCCTGAACTTTATG 60.057 47.826 7.42 0.00 0.00 1.90
74 75 3.157087 CAGTTGGCACCCTGAACTTTAT 58.843 45.455 7.42 0.00 0.00 1.40
75 76 2.173782 TCAGTTGGCACCCTGAACTTTA 59.826 45.455 12.33 0.00 33.42 1.85
76 77 1.064017 TCAGTTGGCACCCTGAACTTT 60.064 47.619 12.33 0.00 33.42 2.66
77 78 0.550914 TCAGTTGGCACCCTGAACTT 59.449 50.000 12.33 0.00 33.42 2.66
78 79 0.550914 TTCAGTTGGCACCCTGAACT 59.449 50.000 19.49 3.42 39.34 3.01
79 80 1.338020 CTTTCAGTTGGCACCCTGAAC 59.662 52.381 21.89 2.83 42.30 3.18
80 81 1.214175 TCTTTCAGTTGGCACCCTGAA 59.786 47.619 19.49 19.49 41.39 3.02
81 82 0.843309 TCTTTCAGTTGGCACCCTGA 59.157 50.000 11.03 11.03 34.30 3.86
82 83 1.691196 TTCTTTCAGTTGGCACCCTG 58.309 50.000 6.96 6.96 0.00 4.45
83 84 2.031870 GTTTCTTTCAGTTGGCACCCT 58.968 47.619 0.00 0.00 0.00 4.34
84 85 1.068588 GGTTTCTTTCAGTTGGCACCC 59.931 52.381 0.00 0.00 0.00 4.61
85 86 1.754226 TGGTTTCTTTCAGTTGGCACC 59.246 47.619 0.00 0.00 0.00 5.01
86 87 2.799562 GCTGGTTTCTTTCAGTTGGCAC 60.800 50.000 0.00 0.00 33.81 5.01
87 88 1.408702 GCTGGTTTCTTTCAGTTGGCA 59.591 47.619 0.00 0.00 33.81 4.92
88 89 1.408702 TGCTGGTTTCTTTCAGTTGGC 59.591 47.619 0.00 0.00 33.81 4.52
89 90 3.799281 TTGCTGGTTTCTTTCAGTTGG 57.201 42.857 0.00 0.00 33.81 3.77
90 91 4.928615 TGTTTTGCTGGTTTCTTTCAGTTG 59.071 37.500 0.00 0.00 33.81 3.16
91 92 4.929211 GTGTTTTGCTGGTTTCTTTCAGTT 59.071 37.500 0.00 0.00 33.81 3.16
92 93 4.220602 AGTGTTTTGCTGGTTTCTTTCAGT 59.779 37.500 0.00 0.00 33.81 3.41
93 94 4.747810 AGTGTTTTGCTGGTTTCTTTCAG 58.252 39.130 0.00 0.00 0.00 3.02
94 95 4.674101 CGAGTGTTTTGCTGGTTTCTTTCA 60.674 41.667 0.00 0.00 0.00 2.69
95 96 3.791353 CGAGTGTTTTGCTGGTTTCTTTC 59.209 43.478 0.00 0.00 0.00 2.62
96 97 3.192633 ACGAGTGTTTTGCTGGTTTCTTT 59.807 39.130 0.00 0.00 0.00 2.52
97 98 2.752903 ACGAGTGTTTTGCTGGTTTCTT 59.247 40.909 0.00 0.00 0.00 2.52
98 99 2.354821 GACGAGTGTTTTGCTGGTTTCT 59.645 45.455 0.00 0.00 0.00 2.52
99 100 2.096819 TGACGAGTGTTTTGCTGGTTTC 59.903 45.455 0.00 0.00 0.00 2.78
100 101 2.088423 TGACGAGTGTTTTGCTGGTTT 58.912 42.857 0.00 0.00 0.00 3.27
101 102 1.670811 CTGACGAGTGTTTTGCTGGTT 59.329 47.619 0.00 0.00 0.00 3.67
102 103 1.299541 CTGACGAGTGTTTTGCTGGT 58.700 50.000 0.00 0.00 0.00 4.00
103 104 1.299541 ACTGACGAGTGTTTTGCTGG 58.700 50.000 0.00 0.00 0.00 4.85
104 105 2.095853 ACAACTGACGAGTGTTTTGCTG 59.904 45.455 0.00 0.00 30.61 4.41
105 106 2.095853 CACAACTGACGAGTGTTTTGCT 59.904 45.455 0.00 0.00 30.61 3.91
106 107 2.095213 TCACAACTGACGAGTGTTTTGC 59.905 45.455 0.00 0.00 34.94 3.68
107 108 3.670203 GTCACAACTGACGAGTGTTTTG 58.330 45.455 0.00 0.00 37.67 2.44
117 118 4.614993 GCAGTAGAGAGAGTCACAACTGAC 60.615 50.000 16.35 8.15 46.50 3.51
118 119 3.504134 GCAGTAGAGAGAGTCACAACTGA 59.496 47.826 16.35 0.00 35.92 3.41
119 120 3.669290 CGCAGTAGAGAGAGTCACAACTG 60.669 52.174 11.00 11.00 35.28 3.16
120 121 2.486203 CGCAGTAGAGAGAGTCACAACT 59.514 50.000 0.00 0.00 38.88 3.16
121 122 2.226912 ACGCAGTAGAGAGAGTCACAAC 59.773 50.000 0.00 0.00 41.94 3.32
122 123 2.505405 ACGCAGTAGAGAGAGTCACAA 58.495 47.619 0.00 0.00 41.94 3.33
123 124 2.186532 ACGCAGTAGAGAGAGTCACA 57.813 50.000 0.00 0.00 41.94 3.58
135 136 0.723414 CGGAGAGTTCGTACGCAGTA 59.277 55.000 11.24 0.00 45.11 2.74
137 138 1.226323 CCGGAGAGTTCGTACGCAG 60.226 63.158 11.24 0.00 0.00 5.18
138 139 2.872557 CCGGAGAGTTCGTACGCA 59.127 61.111 11.24 0.00 0.00 5.24
139 140 2.578981 GCCGGAGAGTTCGTACGC 60.579 66.667 11.24 0.00 0.00 4.42
140 141 2.101770 GGCCGGAGAGTTCGTACG 59.898 66.667 5.05 9.53 0.00 3.67
141 142 2.101770 CGGCCGGAGAGTTCGTAC 59.898 66.667 20.10 0.00 0.00 3.67
142 143 1.926511 GAACGGCCGGAGAGTTCGTA 61.927 60.000 31.76 0.00 35.56 3.43
143 144 3.278592 GAACGGCCGGAGAGTTCGT 62.279 63.158 31.76 0.57 35.56 3.85
144 145 2.506438 GAACGGCCGGAGAGTTCG 60.506 66.667 31.76 0.00 35.56 3.95
145 146 2.125633 GGAACGGCCGGAGAGTTC 60.126 66.667 31.76 22.35 42.36 3.01
146 147 3.703127 GGGAACGGCCGGAGAGTT 61.703 66.667 31.76 14.62 37.63 3.01
196 197 4.600576 GCTAGGCGCAGGAGGAGC 62.601 72.222 10.83 4.12 42.17 4.70
197 198 3.922640 GGCTAGGCGCAGGAGGAG 61.923 72.222 10.83 0.00 41.67 3.69
223 224 0.542333 GAGGTAAAGGAGGAGGGCAC 59.458 60.000 0.00 0.00 0.00 5.01
224 225 0.976073 CGAGGTAAAGGAGGAGGGCA 60.976 60.000 0.00 0.00 0.00 5.36
225 226 1.823976 CGAGGTAAAGGAGGAGGGC 59.176 63.158 0.00 0.00 0.00 5.19
226 227 1.687297 GGCGAGGTAAAGGAGGAGGG 61.687 65.000 0.00 0.00 0.00 4.30
227 228 1.823976 GGCGAGGTAAAGGAGGAGG 59.176 63.158 0.00 0.00 0.00 4.30
228 229 1.035932 TCGGCGAGGTAAAGGAGGAG 61.036 60.000 4.99 0.00 0.00 3.69
229 230 0.396695 ATCGGCGAGGTAAAGGAGGA 60.397 55.000 17.22 0.00 0.00 3.71
230 231 0.464452 AATCGGCGAGGTAAAGGAGG 59.536 55.000 17.22 0.00 0.00 4.30
231 232 2.202566 GAAATCGGCGAGGTAAAGGAG 58.797 52.381 17.22 0.00 0.00 3.69
232 233 1.134610 GGAAATCGGCGAGGTAAAGGA 60.135 52.381 17.22 0.00 0.00 3.36
233 234 1.296727 GGAAATCGGCGAGGTAAAGG 58.703 55.000 17.22 0.00 0.00 3.11
234 235 1.933853 CTGGAAATCGGCGAGGTAAAG 59.066 52.381 17.22 6.52 0.00 1.85
235 236 2.010043 GCTGGAAATCGGCGAGGTAAA 61.010 52.381 17.22 0.00 38.09 2.01
236 237 0.461339 GCTGGAAATCGGCGAGGTAA 60.461 55.000 17.22 0.00 38.09 2.85
237 238 1.143183 GCTGGAAATCGGCGAGGTA 59.857 57.895 17.22 0.00 38.09 3.08
238 239 2.125106 GCTGGAAATCGGCGAGGT 60.125 61.111 17.22 5.09 38.09 3.85
243 244 2.897350 CGGAGGCTGGAAATCGGC 60.897 66.667 0.00 0.00 46.78 5.54
244 245 2.897350 GCGGAGGCTGGAAATCGG 60.897 66.667 0.00 0.00 35.83 4.18
261 262 3.610669 CAGGAGGATCGGCGGAGG 61.611 72.222 7.21 0.00 34.37 4.30
262 263 4.292178 GCAGGAGGATCGGCGGAG 62.292 72.222 7.21 0.00 34.37 4.63
264 265 4.899239 GTGCAGGAGGATCGGCGG 62.899 72.222 7.21 0.00 38.69 6.13
265 266 3.781770 GAGTGCAGGAGGATCGGCG 62.782 68.421 0.00 0.00 38.69 6.46
266 267 2.107953 GAGTGCAGGAGGATCGGC 59.892 66.667 0.00 0.00 36.73 5.54
267 268 2.818132 GGAGTGCAGGAGGATCGG 59.182 66.667 0.00 0.00 34.37 4.18
268 269 2.415010 CGGAGTGCAGGAGGATCG 59.585 66.667 0.00 0.00 34.37 3.69
269 270 2.060980 ACCGGAGTGCAGGAGGATC 61.061 63.158 9.46 0.00 33.18 3.36
270 271 2.039624 ACCGGAGTGCAGGAGGAT 59.960 61.111 9.46 0.00 33.18 3.24
271 272 2.997315 CACCGGAGTGCAGGAGGA 60.997 66.667 9.46 0.00 37.14 3.71
288 289 1.381165 GGTGTGGTGTGGTGTGGAAC 61.381 60.000 0.00 0.00 37.35 3.62
289 290 1.077357 GGTGTGGTGTGGTGTGGAA 60.077 57.895 0.00 0.00 0.00 3.53
290 291 2.592864 GGTGTGGTGTGGTGTGGA 59.407 61.111 0.00 0.00 0.00 4.02
291 292 2.674563 ATCGGTGTGGTGTGGTGTGG 62.675 60.000 0.00 0.00 0.00 4.17
292 293 0.817634 AATCGGTGTGGTGTGGTGTG 60.818 55.000 0.00 0.00 0.00 3.82
293 294 0.106918 AAATCGGTGTGGTGTGGTGT 60.107 50.000 0.00 0.00 0.00 4.16
294 295 1.028905 AAAATCGGTGTGGTGTGGTG 58.971 50.000 0.00 0.00 0.00 4.17
295 296 2.105134 TCTAAAATCGGTGTGGTGTGGT 59.895 45.455 0.00 0.00 0.00 4.16
296 297 2.773487 TCTAAAATCGGTGTGGTGTGG 58.227 47.619 0.00 0.00 0.00 4.17
297 298 5.153513 CAATTCTAAAATCGGTGTGGTGTG 58.846 41.667 0.00 0.00 0.00 3.82
298 299 4.217550 CCAATTCTAAAATCGGTGTGGTGT 59.782 41.667 0.00 0.00 0.00 4.16
299 300 4.380444 CCCAATTCTAAAATCGGTGTGGTG 60.380 45.833 0.00 0.00 0.00 4.17
300 301 3.761752 CCCAATTCTAAAATCGGTGTGGT 59.238 43.478 0.00 0.00 0.00 4.16
301 302 4.013728 TCCCAATTCTAAAATCGGTGTGG 58.986 43.478 0.00 0.00 0.00 4.17
302 303 4.096382 CCTCCCAATTCTAAAATCGGTGTG 59.904 45.833 0.00 0.00 0.00 3.82
303 304 4.270008 CCTCCCAATTCTAAAATCGGTGT 58.730 43.478 0.00 0.00 0.00 4.16
304 305 3.632145 CCCTCCCAATTCTAAAATCGGTG 59.368 47.826 0.00 0.00 0.00 4.94
305 306 3.526019 TCCCTCCCAATTCTAAAATCGGT 59.474 43.478 0.00 0.00 0.00 4.69
306 307 4.164843 TCCCTCCCAATTCTAAAATCGG 57.835 45.455 0.00 0.00 0.00 4.18
307 308 5.193679 ACTTCCCTCCCAATTCTAAAATCG 58.806 41.667 0.00 0.00 0.00 3.34
308 309 5.594725 GGACTTCCCTCCCAATTCTAAAATC 59.405 44.000 0.00 0.00 0.00 2.17
309 310 5.519808 GGACTTCCCTCCCAATTCTAAAAT 58.480 41.667 0.00 0.00 0.00 1.82
310 311 4.566907 CGGACTTCCCTCCCAATTCTAAAA 60.567 45.833 0.00 0.00 0.00 1.52
311 312 3.054655 CGGACTTCCCTCCCAATTCTAAA 60.055 47.826 0.00 0.00 0.00 1.85
312 313 2.504175 CGGACTTCCCTCCCAATTCTAA 59.496 50.000 0.00 0.00 0.00 2.10
313 314 2.116238 CGGACTTCCCTCCCAATTCTA 58.884 52.381 0.00 0.00 0.00 2.10
314 315 0.912486 CGGACTTCCCTCCCAATTCT 59.088 55.000 0.00 0.00 0.00 2.40
315 316 0.107165 CCGGACTTCCCTCCCAATTC 60.107 60.000 0.00 0.00 0.00 2.17
316 317 0.845102 ACCGGACTTCCCTCCCAATT 60.845 55.000 9.46 0.00 0.00 2.32
317 318 1.229853 ACCGGACTTCCCTCCCAAT 60.230 57.895 9.46 0.00 0.00 3.16
318 319 1.916777 GACCGGACTTCCCTCCCAA 60.917 63.158 9.46 0.00 0.00 4.12
319 320 2.284405 GACCGGACTTCCCTCCCA 60.284 66.667 9.46 0.00 0.00 4.37
320 321 2.039137 AGACCGGACTTCCCTCCC 59.961 66.667 9.46 0.00 0.00 4.30
321 322 1.305046 TGAGACCGGACTTCCCTCC 60.305 63.158 9.46 0.00 0.00 4.30
322 323 1.950973 GCTGAGACCGGACTTCCCTC 61.951 65.000 9.46 5.19 0.00 4.30
323 324 1.985116 GCTGAGACCGGACTTCCCT 60.985 63.158 9.46 0.00 0.00 4.20
324 325 2.579738 GCTGAGACCGGACTTCCC 59.420 66.667 9.46 0.00 0.00 3.97
325 326 1.950973 GAGGCTGAGACCGGACTTCC 61.951 65.000 9.46 10.49 37.08 3.46
326 327 1.513622 GAGGCTGAGACCGGACTTC 59.486 63.158 9.46 2.70 37.08 3.01
355 365 4.388499 GGGACATCGGCGTGGTGT 62.388 66.667 6.85 10.85 0.00 4.16
372 382 4.436998 GAGGTGGAGGCGGACGTG 62.437 72.222 0.00 0.00 0.00 4.49
375 385 4.083862 GTGGAGGTGGAGGCGGAC 62.084 72.222 0.00 0.00 0.00 4.79
734 797 0.036388 CGAACAAGGCAAGCCCTAGA 60.036 55.000 7.62 0.00 45.62 2.43
749 812 1.136500 GTCCTGAGGATACACCCGAAC 59.864 57.143 3.65 0.00 40.05 3.95
904 967 2.709213 AGCTCTTCAGAACAATGGAGC 58.291 47.619 11.65 11.65 44.21 4.70
953 4237 0.907486 TCATCTGGAGCAGGTCAAGG 59.093 55.000 4.07 0.00 31.51 3.61
1020 4309 4.958581 CCTTCCTTAAAGAAGCCATGGATT 59.041 41.667 16.76 16.76 41.65 3.01
1081 4370 1.800681 GCACAATCCCTTGCCGTAC 59.199 57.895 0.00 0.00 35.69 3.67
1131 4420 4.688419 CTGGCCTTGCACAACGCG 62.688 66.667 3.53 3.53 46.97 6.01
1168 4457 3.869912 GCAACCATCTGCTGAAGGACTAA 60.870 47.826 20.11 0.00 39.34 2.24
1246 4535 1.681780 CCCTTTTAAGCGCCCAGATGA 60.682 52.381 2.29 0.00 0.00 2.92
1265 4554 9.436957 TCATTTCTCTGAACATTTTAGTAGTCC 57.563 33.333 0.00 0.00 0.00 3.85
1347 4636 0.599558 TGCTTCTTCCATGCTTGCAC 59.400 50.000 0.00 0.00 0.00 4.57
1542 4831 6.804295 CACGTTTAGCATAGGCAACAATTAAA 59.196 34.615 0.67 0.00 44.61 1.52
1550 4839 2.772077 TCCACGTTTAGCATAGGCAA 57.228 45.000 0.67 0.00 44.61 4.52
1591 4886 5.028375 GCGTTCCTGCATTTTACTTGATAC 58.972 41.667 0.00 0.00 34.15 2.24
1659 4955 1.566231 AGCCTACCCATTCTGGAAAGG 59.434 52.381 8.58 8.58 40.96 3.11
1748 5044 3.569701 GCAAAAACCCTGAATCAGAGACA 59.430 43.478 12.53 0.00 32.44 3.41
1752 5048 5.630121 TCTAAGCAAAAACCCTGAATCAGA 58.370 37.500 12.53 0.00 32.44 3.27
1771 5067 8.871629 TTAACTTTAGCCAAATCACCATCTAA 57.128 30.769 0.00 0.00 0.00 2.10
1837 5133 3.137484 CGAAGAACGGAATGCCAGA 57.863 52.632 0.00 0.00 38.46 3.86
1871 5167 1.005215 CCCTTCCTTCTTGGCACAGAT 59.995 52.381 0.00 0.00 42.39 2.90
1908 5204 7.557719 CCCATGTCTATAACCAAGTCAAAGATT 59.442 37.037 0.00 0.00 0.00 2.40
2093 5389 2.366916 AGACCATCATCGATCCTTCCAC 59.633 50.000 0.00 0.00 0.00 4.02
2113 5409 4.208047 CGGCATTTCTCTGAATAGAACGAG 59.792 45.833 0.00 0.00 35.25 4.18
2115 5411 4.112634 TCGGCATTTCTCTGAATAGAACG 58.887 43.478 0.00 0.00 35.25 3.95
2137 5433 6.324254 ACAGTGTCAGGTTTAACTCTCTTACT 59.676 38.462 0.00 0.00 0.00 2.24
2183 5480 0.030638 CCAAGCACGAAACAACCCTG 59.969 55.000 0.00 0.00 0.00 4.45
2184 5481 0.106918 TCCAAGCACGAAACAACCCT 60.107 50.000 0.00 0.00 0.00 4.34
2200 5497 2.305635 TCCTTGCAGCAATAGTTCTCCA 59.694 45.455 8.67 0.00 0.00 3.86
2209 7479 2.028748 GGAACATTGTCCTTGCAGCAAT 60.029 45.455 8.67 0.00 34.56 3.56
2288 7558 7.798596 ATGCAATTATTTCTACAGAGTCCTG 57.201 36.000 0.00 0.00 45.76 3.86
2295 7565 9.823098 GCTTCATCTATGCAATTATTTCTACAG 57.177 33.333 0.00 0.00 0.00 2.74
2348 7618 8.334263 TGCAATATTGAACTTCACACTCATTA 57.666 30.769 19.73 0.00 0.00 1.90
2377 7647 7.692460 ACATTGCATCGATCATGGTATTTAT 57.308 32.000 0.00 0.00 32.37 1.40
2379 7649 6.486320 TGTACATTGCATCGATCATGGTATTT 59.514 34.615 0.00 0.00 32.37 1.40
2428 7698 7.633361 CTGATATTGCAGCAAATAAATCACC 57.367 36.000 12.97 0.00 0.00 4.02
2627 7897 1.402787 ATAATTTCCGGCCTTGGCAG 58.597 50.000 14.04 9.40 0.00 4.85
2877 8169 4.584638 ATGACCCCAATGCTACAAGTAA 57.415 40.909 0.00 0.00 0.00 2.24
2937 8251 5.102313 GCCCATCGAAGGTTAAAAGATTTG 58.898 41.667 5.87 0.00 0.00 2.32
2938 8252 4.142469 CGCCCATCGAAGGTTAAAAGATTT 60.142 41.667 5.87 0.00 41.67 2.17
3000 8314 5.484644 AGAAGTCCTTACCCCTAAAGTTCTC 59.515 44.000 0.00 0.00 0.00 2.87
3001 8315 5.248705 CAGAAGTCCTTACCCCTAAAGTTCT 59.751 44.000 0.00 0.00 0.00 3.01
3132 8455 2.419297 CCTATGACCAGAGCACCAAGAC 60.419 54.545 0.00 0.00 0.00 3.01
3196 8519 5.452496 GCATAGAGTATTGGAGACTTCAGCA 60.452 44.000 0.00 0.00 0.00 4.41
3264 8588 2.044123 GGAGTACAGCCTCCCATTTG 57.956 55.000 0.00 0.00 44.49 2.32
3350 10118 4.041567 TCTTGAAAGACCTGATGCCAAGTA 59.958 41.667 0.00 0.00 33.39 2.24
3402 11885 4.279169 CGCATCATGGGATATTTGTTTCCT 59.721 41.667 0.00 0.00 31.21 3.36
3424 11907 3.848142 CACCGAAGAGTGCAGACG 58.152 61.111 0.00 0.00 0.00 4.18
3544 12027 6.990798 TGCATTTTGGAGATAAAACATGACA 58.009 32.000 0.00 0.00 32.86 3.58
3555 12038 2.097825 GTGAGGCTGCATTTTGGAGAT 58.902 47.619 0.50 0.00 38.14 2.75
3617 12100 3.990959 AATCTTCCTGAGGTTCCTGAC 57.009 47.619 0.00 0.00 0.00 3.51
3626 12109 7.154435 ACATGAATTGTCAAATCTTCCTGAG 57.846 36.000 0.00 0.00 37.30 3.35
3640 12123 8.938906 GCATTTTGGAGATAAAACATGAATTGT 58.061 29.630 0.00 0.00 41.53 2.71
3641 12124 8.937884 TGCATTTTGGAGATAAAACATGAATTG 58.062 29.630 0.00 0.00 32.86 2.32
3642 12125 9.158233 CTGCATTTTGGAGATAAAACATGAATT 57.842 29.630 0.00 0.00 38.14 2.17
3643 12126 7.279313 GCTGCATTTTGGAGATAAAACATGAAT 59.721 33.333 0.00 0.00 38.14 2.57
3644 12127 6.591062 GCTGCATTTTGGAGATAAAACATGAA 59.409 34.615 0.00 0.00 38.14 2.57
3645 12128 6.101332 GCTGCATTTTGGAGATAAAACATGA 58.899 36.000 0.00 0.00 38.14 3.07
3646 12129 5.292589 GGCTGCATTTTGGAGATAAAACATG 59.707 40.000 0.50 0.00 38.14 3.21
3647 12130 5.188359 AGGCTGCATTTTGGAGATAAAACAT 59.812 36.000 0.50 0.00 38.14 2.71
3648 12131 4.527816 AGGCTGCATTTTGGAGATAAAACA 59.472 37.500 0.50 0.00 38.14 2.83
3649 12132 5.077134 AGGCTGCATTTTGGAGATAAAAC 57.923 39.130 0.50 0.00 38.14 2.43
3650 12133 4.771577 TGAGGCTGCATTTTGGAGATAAAA 59.228 37.500 0.50 0.00 38.14 1.52
3651 12134 4.158394 GTGAGGCTGCATTTTGGAGATAAA 59.842 41.667 0.50 0.00 38.14 1.40
3652 12135 3.696051 GTGAGGCTGCATTTTGGAGATAA 59.304 43.478 0.50 0.00 38.14 1.75
3653 12136 3.054139 AGTGAGGCTGCATTTTGGAGATA 60.054 43.478 0.50 0.00 38.14 1.98
3654 12137 2.097825 GTGAGGCTGCATTTTGGAGAT 58.902 47.619 0.50 0.00 38.14 2.75
3655 12138 1.074405 AGTGAGGCTGCATTTTGGAGA 59.926 47.619 0.50 0.00 38.14 3.71
3656 12139 1.542492 AGTGAGGCTGCATTTTGGAG 58.458 50.000 0.50 0.00 38.97 3.86
3657 12140 1.888512 GAAGTGAGGCTGCATTTTGGA 59.111 47.619 0.50 0.00 0.00 3.53
3658 12141 1.067354 GGAAGTGAGGCTGCATTTTGG 60.067 52.381 0.50 0.00 0.00 3.28
3659 12142 1.891150 AGGAAGTGAGGCTGCATTTTG 59.109 47.619 0.50 0.00 0.00 2.44
3660 12143 2.299326 AGGAAGTGAGGCTGCATTTT 57.701 45.000 0.50 0.00 0.00 1.82
3661 12144 2.299326 AAGGAAGTGAGGCTGCATTT 57.701 45.000 0.50 0.00 0.00 2.32
3662 12145 2.299326 AAAGGAAGTGAGGCTGCATT 57.701 45.000 0.50 0.00 0.00 3.56
3663 12146 2.943199 GCTAAAGGAAGTGAGGCTGCAT 60.943 50.000 0.50 0.00 0.00 3.96
3664 12147 1.611673 GCTAAAGGAAGTGAGGCTGCA 60.612 52.381 0.50 0.00 0.00 4.41
3665 12148 1.090728 GCTAAAGGAAGTGAGGCTGC 58.909 55.000 0.00 0.00 0.00 5.25
3666 12149 1.680249 GGGCTAAAGGAAGTGAGGCTG 60.680 57.143 0.00 0.00 35.01 4.85
3667 12150 0.621082 GGGCTAAAGGAAGTGAGGCT 59.379 55.000 0.00 0.00 35.01 4.58
3668 12151 0.744771 CGGGCTAAAGGAAGTGAGGC 60.745 60.000 0.00 0.00 0.00 4.70
3669 12152 0.613777 ACGGGCTAAAGGAAGTGAGG 59.386 55.000 0.00 0.00 0.00 3.86
3670 12153 1.275291 TCACGGGCTAAAGGAAGTGAG 59.725 52.381 0.00 0.00 34.24 3.51
3671 12154 1.344065 TCACGGGCTAAAGGAAGTGA 58.656 50.000 0.00 0.00 36.43 3.41
3672 12155 2.280628 GATCACGGGCTAAAGGAAGTG 58.719 52.381 0.00 0.00 0.00 3.16
3673 12156 1.906574 TGATCACGGGCTAAAGGAAGT 59.093 47.619 0.00 0.00 0.00 3.01
3674 12157 2.093447 AGTGATCACGGGCTAAAGGAAG 60.093 50.000 19.85 0.00 36.20 3.46
3762 12248 2.225491 TGAAGCAAGCGACCAACAATAC 59.775 45.455 0.00 0.00 0.00 1.89
3789 12275 2.710096 ATCCTGACAACAATACCCGG 57.290 50.000 0.00 0.00 0.00 5.73
3791 12277 8.410912 GGTAAATAAATCCTGACAACAATACCC 58.589 37.037 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.