Multiple sequence alignment - TraesCS1B01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G072700 chr1B 100.000 3533 0 0 1 3533 57103191 57106723 0.000000e+00 6525.0
1 TraesCS1B01G072700 chr1B 87.774 1914 184 20 470 2358 57220244 57222132 0.000000e+00 2193.0
2 TraesCS1B01G072700 chr1B 94.340 1219 68 1 1140 2358 57137689 57138906 0.000000e+00 1868.0
3 TraesCS1B01G072700 chr1B 84.330 1889 257 24 498 2358 57130212 57132089 0.000000e+00 1812.0
4 TraesCS1B01G072700 chr1B 84.123 1921 241 34 480 2358 56501842 56499944 0.000000e+00 1799.0
5 TraesCS1B01G072700 chr1B 82.716 1944 310 20 436 2358 57791721 57789783 0.000000e+00 1705.0
6 TraesCS1B01G072700 chr1B 92.437 1190 61 10 2355 3533 359456092 359457263 0.000000e+00 1672.0
7 TraesCS1B01G072700 chr1B 92.211 1194 59 7 2348 3513 328148756 328149943 0.000000e+00 1659.0
8 TraesCS1B01G072700 chr1B 93.848 1089 43 7 2357 3428 289084640 289085721 0.000000e+00 1618.0
9 TraesCS1B01G072700 chr1B 81.782 1773 281 28 434 2176 57009358 57011118 0.000000e+00 1447.0
10 TraesCS1B01G072700 chr1B 97.059 34 1 0 944 977 57104163 57104196 1.370000e-04 58.4
11 TraesCS1B01G072700 chr1A 89.248 1888 151 28 498 2354 36635532 36637398 0.000000e+00 2314.0
12 TraesCS1B01G072700 chr1A 84.161 1913 259 26 479 2358 36613142 36615043 0.000000e+00 1814.0
13 TraesCS1B01G072700 chr1A 84.155 1906 263 17 479 2353 36188365 36186468 0.000000e+00 1810.0
14 TraesCS1B01G072700 chr1A 82.077 2003 309 31 382 2358 37505455 37503477 0.000000e+00 1664.0
15 TraesCS1B01G072700 chr1A 83.619 1691 244 15 688 2353 36174648 36172966 0.000000e+00 1557.0
16 TraesCS1B01G072700 chr1A 78.265 2006 362 49 398 2352 49354691 49356673 0.000000e+00 1221.0
17 TraesCS1B01G072700 chr1D 94.191 1291 66 8 1072 2358 37446562 37447847 0.000000e+00 1960.0
18 TraesCS1B01G072700 chr1D 84.013 1914 266 19 472 2354 36618246 36616342 0.000000e+00 1803.0
19 TraesCS1B01G072700 chr1D 83.632 1955 279 26 434 2359 37423753 37425695 0.000000e+00 1799.0
20 TraesCS1B01G072700 chr1D 84.168 1838 257 22 546 2361 36624572 36622747 0.000000e+00 1751.0
21 TraesCS1B01G072700 chr1D 83.097 1905 283 24 477 2358 38584045 38582157 0.000000e+00 1698.0
22 TraesCS1B01G072700 chr1D 82.137 1965 293 30 434 2354 38368124 38366174 0.000000e+00 1631.0
23 TraesCS1B01G072700 chr1D 78.339 1902 347 44 496 2358 49426338 49424463 0.000000e+00 1170.0
24 TraesCS1B01G072700 chr1D 89.910 446 33 4 498 937 37442749 37443188 6.620000e-157 564.0
25 TraesCS1B01G072700 chr1D 80.609 722 96 27 410 1102 38560373 38559667 5.230000e-143 518.0
26 TraesCS1B01G072700 chr1D 80.456 614 91 19 761 1351 38589104 38588497 3.240000e-120 442.0
27 TraesCS1B01G072700 chr1D 75.090 835 163 26 536 1347 58869899 58869087 7.260000e-92 348.0
28 TraesCS1B01G072700 chr1D 77.322 463 69 19 494 935 49577116 49576669 1.270000e-59 241.0
29 TraesCS1B01G072700 chr3D 93.613 1190 50 6 2354 3533 268942685 268943858 0.000000e+00 1753.0
30 TraesCS1B01G072700 chr3D 86.876 541 47 12 2990 3519 337659511 337660038 5.080000e-163 584.0
31 TraesCS1B01G072700 chr4B 93.278 1205 46 5 2357 3533 73279972 73278775 0.000000e+00 1744.0
32 TraesCS1B01G072700 chr4B 88.962 453 31 9 3094 3533 58757328 58756882 3.100000e-150 542.0
33 TraesCS1B01G072700 chr4B 91.803 122 9 1 1 121 625334360 625334239 6.070000e-38 169.0
34 TraesCS1B01G072700 chr3A 92.839 1187 67 6 2357 3533 724741322 724740144 0.000000e+00 1705.0
35 TraesCS1B01G072700 chr5B 92.593 1188 70 8 2357 3533 322909451 322908271 0.000000e+00 1690.0
36 TraesCS1B01G072700 chr5B 92.320 1211 59 16 2355 3533 470019923 470018715 0.000000e+00 1690.0
37 TraesCS1B01G072700 chr5B 91.455 1182 75 10 2356 3533 43868188 43869347 0.000000e+00 1600.0
38 TraesCS1B01G072700 chr5B 91.055 1185 64 10 2357 3531 130923659 130924811 0.000000e+00 1563.0
39 TraesCS1B01G072700 chr3B 92.282 1205 59 4 2357 3533 671572019 671570821 0.000000e+00 1679.0
40 TraesCS1B01G072700 chr3B 91.542 1206 61 12 2356 3533 293750530 293749338 0.000000e+00 1624.0
41 TraesCS1B01G072700 chr3B 88.543 1187 68 15 2358 3533 322290075 322288946 0.000000e+00 1376.0
42 TraesCS1B01G072700 chr4A 91.206 1194 77 8 2356 3533 729603450 729604631 0.000000e+00 1598.0
43 TraesCS1B01G072700 chr7B 85.560 554 66 6 2990 3533 240659036 240659585 5.120000e-158 568.0
44 TraesCS1B01G072700 chr7A 90.141 142 12 2 1 140 568477992 568477851 2.170000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G072700 chr1B 57103191 57106723 3532 False 3291.7 6525 98.5295 1 3533 2 chr1B.!!$F8 3532
1 TraesCS1B01G072700 chr1B 57220244 57222132 1888 False 2193.0 2193 87.7740 470 2358 1 chr1B.!!$F4 1888
2 TraesCS1B01G072700 chr1B 57137689 57138906 1217 False 1868.0 1868 94.3400 1140 2358 1 chr1B.!!$F3 1218
3 TraesCS1B01G072700 chr1B 57130212 57132089 1877 False 1812.0 1812 84.3300 498 2358 1 chr1B.!!$F2 1860
4 TraesCS1B01G072700 chr1B 56499944 56501842 1898 True 1799.0 1799 84.1230 480 2358 1 chr1B.!!$R1 1878
5 TraesCS1B01G072700 chr1B 57789783 57791721 1938 True 1705.0 1705 82.7160 436 2358 1 chr1B.!!$R2 1922
6 TraesCS1B01G072700 chr1B 359456092 359457263 1171 False 1672.0 1672 92.4370 2355 3533 1 chr1B.!!$F7 1178
7 TraesCS1B01G072700 chr1B 328148756 328149943 1187 False 1659.0 1659 92.2110 2348 3513 1 chr1B.!!$F6 1165
8 TraesCS1B01G072700 chr1B 289084640 289085721 1081 False 1618.0 1618 93.8480 2357 3428 1 chr1B.!!$F5 1071
9 TraesCS1B01G072700 chr1B 57009358 57011118 1760 False 1447.0 1447 81.7820 434 2176 1 chr1B.!!$F1 1742
10 TraesCS1B01G072700 chr1A 36635532 36637398 1866 False 2314.0 2314 89.2480 498 2354 1 chr1A.!!$F2 1856
11 TraesCS1B01G072700 chr1A 36613142 36615043 1901 False 1814.0 1814 84.1610 479 2358 1 chr1A.!!$F1 1879
12 TraesCS1B01G072700 chr1A 36186468 36188365 1897 True 1810.0 1810 84.1550 479 2353 1 chr1A.!!$R2 1874
13 TraesCS1B01G072700 chr1A 37503477 37505455 1978 True 1664.0 1664 82.0770 382 2358 1 chr1A.!!$R3 1976
14 TraesCS1B01G072700 chr1A 36172966 36174648 1682 True 1557.0 1557 83.6190 688 2353 1 chr1A.!!$R1 1665
15 TraesCS1B01G072700 chr1A 49354691 49356673 1982 False 1221.0 1221 78.2650 398 2352 1 chr1A.!!$F3 1954
16 TraesCS1B01G072700 chr1D 36616342 36618246 1904 True 1803.0 1803 84.0130 472 2354 1 chr1D.!!$R1 1882
17 TraesCS1B01G072700 chr1D 37423753 37425695 1942 False 1799.0 1799 83.6320 434 2359 1 chr1D.!!$F1 1925
18 TraesCS1B01G072700 chr1D 36622747 36624572 1825 True 1751.0 1751 84.1680 546 2361 1 chr1D.!!$R2 1815
19 TraesCS1B01G072700 chr1D 38582157 38584045 1888 True 1698.0 1698 83.0970 477 2358 1 chr1D.!!$R5 1881
20 TraesCS1B01G072700 chr1D 38366174 38368124 1950 True 1631.0 1631 82.1370 434 2354 1 chr1D.!!$R3 1920
21 TraesCS1B01G072700 chr1D 37442749 37447847 5098 False 1262.0 1960 92.0505 498 2358 2 chr1D.!!$F2 1860
22 TraesCS1B01G072700 chr1D 49424463 49426338 1875 True 1170.0 1170 78.3390 496 2358 1 chr1D.!!$R7 1862
23 TraesCS1B01G072700 chr1D 38559667 38560373 706 True 518.0 518 80.6090 410 1102 1 chr1D.!!$R4 692
24 TraesCS1B01G072700 chr1D 38588497 38589104 607 True 442.0 442 80.4560 761 1351 1 chr1D.!!$R6 590
25 TraesCS1B01G072700 chr1D 58869087 58869899 812 True 348.0 348 75.0900 536 1347 1 chr1D.!!$R9 811
26 TraesCS1B01G072700 chr3D 268942685 268943858 1173 False 1753.0 1753 93.6130 2354 3533 1 chr3D.!!$F1 1179
27 TraesCS1B01G072700 chr3D 337659511 337660038 527 False 584.0 584 86.8760 2990 3519 1 chr3D.!!$F2 529
28 TraesCS1B01G072700 chr4B 73278775 73279972 1197 True 1744.0 1744 93.2780 2357 3533 1 chr4B.!!$R2 1176
29 TraesCS1B01G072700 chr3A 724740144 724741322 1178 True 1705.0 1705 92.8390 2357 3533 1 chr3A.!!$R1 1176
30 TraesCS1B01G072700 chr5B 322908271 322909451 1180 True 1690.0 1690 92.5930 2357 3533 1 chr5B.!!$R1 1176
31 TraesCS1B01G072700 chr5B 470018715 470019923 1208 True 1690.0 1690 92.3200 2355 3533 1 chr5B.!!$R2 1178
32 TraesCS1B01G072700 chr5B 43868188 43869347 1159 False 1600.0 1600 91.4550 2356 3533 1 chr5B.!!$F1 1177
33 TraesCS1B01G072700 chr5B 130923659 130924811 1152 False 1563.0 1563 91.0550 2357 3531 1 chr5B.!!$F2 1174
34 TraesCS1B01G072700 chr3B 671570821 671572019 1198 True 1679.0 1679 92.2820 2357 3533 1 chr3B.!!$R3 1176
35 TraesCS1B01G072700 chr3B 293749338 293750530 1192 True 1624.0 1624 91.5420 2356 3533 1 chr3B.!!$R1 1177
36 TraesCS1B01G072700 chr3B 322288946 322290075 1129 True 1376.0 1376 88.5430 2358 3533 1 chr3B.!!$R2 1175
37 TraesCS1B01G072700 chr4A 729603450 729604631 1181 False 1598.0 1598 91.2060 2356 3533 1 chr4A.!!$F1 1177
38 TraesCS1B01G072700 chr7B 240659036 240659585 549 False 568.0 568 85.5600 2990 3533 1 chr7B.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.032615 ATGCGTCTCCCTCTCCTTCT 60.033 55.0 0.0 0.00 0.00 2.85 F
173 174 0.038618 AAAAAGATGAAACGCCCGCC 60.039 50.0 0.0 0.00 0.00 6.13 F
307 308 0.039074 AGAGAACGACAAGCGACAGG 60.039 55.0 0.0 0.00 44.57 4.00 F
309 310 0.039074 AGAACGACAAGCGACAGGAG 60.039 55.0 0.0 0.00 44.57 3.69 F
331 332 0.097325 GAACGCACCACAACGACAAA 59.903 50.0 0.0 0.00 0.00 2.83 F
379 380 0.107508 ACGAGATCCAATGGCTGTGG 60.108 55.0 0.0 1.04 37.51 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 4455 0.990374 ATTGAGAGAGCAGGCACCTT 59.010 50.000 0.00 0.00 0.00 3.50 R
1487 4823 1.897133 TGCTTCTTCCATGCTTGCAAT 59.103 42.857 0.00 0.00 0.00 3.56 R
1735 5077 2.621055 TGCGTTCCTGCATTTTACTTGT 59.379 40.909 0.00 0.00 40.62 3.16 R
2275 5621 3.615496 TCAGGTTTAATTCTCTTACGCGC 59.385 43.478 5.73 0.00 0.00 6.86 R
2304 5650 6.317088 CCATCCATTATGACGCAATATGAAC 58.683 40.000 0.00 0.00 37.86 3.18 R
2576 5923 6.098695 TGTTAGAGTACGTAATGGGCCTAATT 59.901 38.462 4.53 6.05 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.666836 GACTACCTACGATGCGTCTC 57.333 55.000 4.05 0.00 41.54 3.36
20 21 1.263752 GACTACCTACGATGCGTCTCC 59.736 57.143 4.05 0.00 41.54 3.71
21 22 0.592148 CTACCTACGATGCGTCTCCC 59.408 60.000 4.05 0.00 41.54 4.30
22 23 0.182061 TACCTACGATGCGTCTCCCT 59.818 55.000 4.05 0.00 41.54 4.20
23 24 1.102222 ACCTACGATGCGTCTCCCTC 61.102 60.000 4.05 0.00 41.54 4.30
24 25 0.820074 CCTACGATGCGTCTCCCTCT 60.820 60.000 4.05 0.00 41.54 3.69
25 26 0.589223 CTACGATGCGTCTCCCTCTC 59.411 60.000 4.05 0.00 41.54 3.20
26 27 0.818445 TACGATGCGTCTCCCTCTCC 60.818 60.000 4.05 0.00 41.54 3.71
27 28 1.826054 CGATGCGTCTCCCTCTCCT 60.826 63.158 4.05 0.00 0.00 3.69
28 29 1.388065 CGATGCGTCTCCCTCTCCTT 61.388 60.000 4.05 0.00 0.00 3.36
29 30 0.387565 GATGCGTCTCCCTCTCCTTC 59.612 60.000 0.00 0.00 0.00 3.46
30 31 0.032615 ATGCGTCTCCCTCTCCTTCT 60.033 55.000 0.00 0.00 0.00 2.85
31 32 0.681564 TGCGTCTCCCTCTCCTTCTC 60.682 60.000 0.00 0.00 0.00 2.87
32 33 0.395173 GCGTCTCCCTCTCCTTCTCT 60.395 60.000 0.00 0.00 0.00 3.10
33 34 1.675552 CGTCTCCCTCTCCTTCTCTC 58.324 60.000 0.00 0.00 0.00 3.20
34 35 1.749286 CGTCTCCCTCTCCTTCTCTCC 60.749 61.905 0.00 0.00 0.00 3.71
35 36 0.930726 TCTCCCTCTCCTTCTCTCCC 59.069 60.000 0.00 0.00 0.00 4.30
36 37 0.933700 CTCCCTCTCCTTCTCTCCCT 59.066 60.000 0.00 0.00 0.00 4.20
37 38 0.930726 TCCCTCTCCTTCTCTCCCTC 59.069 60.000 0.00 0.00 0.00 4.30
38 39 0.105709 CCCTCTCCTTCTCTCCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
39 40 0.633921 CCTCTCCTTCTCTCCCTCCA 59.366 60.000 0.00 0.00 0.00 3.86
40 41 1.411501 CCTCTCCTTCTCTCCCTCCAG 60.412 61.905 0.00 0.00 0.00 3.86
41 42 1.568597 CTCTCCTTCTCTCCCTCCAGA 59.431 57.143 0.00 0.00 0.00 3.86
42 43 2.003830 TCTCCTTCTCTCCCTCCAGAA 58.996 52.381 0.00 0.00 0.00 3.02
43 44 2.589664 TCTCCTTCTCTCCCTCCAGAAT 59.410 50.000 0.00 0.00 0.00 2.40
44 45 3.013417 TCTCCTTCTCTCCCTCCAGAATT 59.987 47.826 0.00 0.00 0.00 2.17
45 46 3.379452 TCCTTCTCTCCCTCCAGAATTC 58.621 50.000 0.00 0.00 0.00 2.17
46 47 2.102252 CCTTCTCTCCCTCCAGAATTCG 59.898 54.545 0.00 0.00 0.00 3.34
47 48 1.115467 TCTCTCCCTCCAGAATTCGC 58.885 55.000 0.00 0.00 0.00 4.70
48 49 0.105778 CTCTCCCTCCAGAATTCGCC 59.894 60.000 0.00 0.00 0.00 5.54
49 50 0.325671 TCTCCCTCCAGAATTCGCCT 60.326 55.000 0.00 0.00 0.00 5.52
50 51 0.179062 CTCCCTCCAGAATTCGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
51 52 1.821332 CCCTCCAGAATTCGCCTGC 60.821 63.158 0.00 0.00 0.00 4.85
52 53 2.176273 CCTCCAGAATTCGCCTGCG 61.176 63.158 4.92 4.92 41.35 5.18
53 54 2.817423 CTCCAGAATTCGCCTGCGC 61.817 63.158 6.67 0.00 39.59 6.09
54 55 3.880846 CCAGAATTCGCCTGCGCC 61.881 66.667 4.18 0.00 39.59 6.53
55 56 2.821366 CAGAATTCGCCTGCGCCT 60.821 61.111 4.18 0.00 39.59 5.52
56 57 2.512515 AGAATTCGCCTGCGCCTC 60.513 61.111 4.18 3.21 39.59 4.70
57 58 3.929948 GAATTCGCCTGCGCCTCG 61.930 66.667 4.18 5.75 39.59 4.63
58 59 4.451150 AATTCGCCTGCGCCTCGA 62.451 61.111 4.18 8.41 39.59 4.04
59 60 4.880537 ATTCGCCTGCGCCTCGAG 62.881 66.667 4.18 5.13 39.59 4.04
78 79 2.898729 GCACCAGCTGCTAGATAGAA 57.101 50.000 8.66 0.00 43.33 2.10
79 80 3.185246 GCACCAGCTGCTAGATAGAAA 57.815 47.619 8.66 0.00 43.33 2.52
80 81 3.535561 GCACCAGCTGCTAGATAGAAAA 58.464 45.455 8.66 0.00 43.33 2.29
81 82 4.133078 GCACCAGCTGCTAGATAGAAAAT 58.867 43.478 8.66 0.00 43.33 1.82
82 83 4.024218 GCACCAGCTGCTAGATAGAAAATG 60.024 45.833 8.66 0.00 43.33 2.32
83 84 4.514441 CACCAGCTGCTAGATAGAAAATGG 59.486 45.833 8.66 0.00 0.00 3.16
84 85 4.070716 CCAGCTGCTAGATAGAAAATGGG 58.929 47.826 8.66 0.00 0.00 4.00
85 86 4.070716 CAGCTGCTAGATAGAAAATGGGG 58.929 47.826 0.00 0.00 0.00 4.96
86 87 3.976654 AGCTGCTAGATAGAAAATGGGGA 59.023 43.478 0.00 0.00 0.00 4.81
87 88 4.413520 AGCTGCTAGATAGAAAATGGGGAA 59.586 41.667 0.00 0.00 0.00 3.97
88 89 4.517075 GCTGCTAGATAGAAAATGGGGAAC 59.483 45.833 0.00 0.00 0.00 3.62
89 90 4.703897 TGCTAGATAGAAAATGGGGAACG 58.296 43.478 0.00 0.00 0.00 3.95
90 91 4.065789 GCTAGATAGAAAATGGGGAACGG 58.934 47.826 0.00 0.00 0.00 4.44
91 92 2.932261 AGATAGAAAATGGGGAACGGC 58.068 47.619 0.00 0.00 0.00 5.68
92 93 1.602377 GATAGAAAATGGGGAACGGCG 59.398 52.381 4.80 4.80 0.00 6.46
93 94 0.393267 TAGAAAATGGGGAACGGCGG 60.393 55.000 13.24 0.00 0.00 6.13
94 95 1.676303 GAAAATGGGGAACGGCGGA 60.676 57.895 13.24 0.00 0.00 5.54
95 96 1.228613 AAAATGGGGAACGGCGGAA 60.229 52.632 13.24 0.00 0.00 4.30
96 97 1.248101 AAAATGGGGAACGGCGGAAG 61.248 55.000 13.24 0.00 0.00 3.46
97 98 2.132089 AAATGGGGAACGGCGGAAGA 62.132 55.000 13.24 0.00 0.00 2.87
98 99 2.536997 AATGGGGAACGGCGGAAGAG 62.537 60.000 13.24 0.00 0.00 2.85
99 100 4.468689 GGGGAACGGCGGAAGAGG 62.469 72.222 13.24 0.00 0.00 3.69
100 101 3.387947 GGGAACGGCGGAAGAGGA 61.388 66.667 13.24 0.00 0.00 3.71
101 102 2.660802 GGAACGGCGGAAGAGGAA 59.339 61.111 13.24 0.00 0.00 3.36
102 103 1.221021 GGAACGGCGGAAGAGGAAT 59.779 57.895 13.24 0.00 0.00 3.01
103 104 1.090052 GGAACGGCGGAAGAGGAATG 61.090 60.000 13.24 0.00 0.00 2.67
104 105 1.078426 AACGGCGGAAGAGGAATGG 60.078 57.895 13.24 0.00 0.00 3.16
105 106 2.203070 CGGCGGAAGAGGAATGGG 60.203 66.667 0.00 0.00 0.00 4.00
106 107 2.193248 GGCGGAAGAGGAATGGGG 59.807 66.667 0.00 0.00 0.00 4.96
107 108 2.375345 GGCGGAAGAGGAATGGGGA 61.375 63.158 0.00 0.00 0.00 4.81
108 109 1.607612 GCGGAAGAGGAATGGGGAA 59.392 57.895 0.00 0.00 0.00 3.97
109 110 0.748367 GCGGAAGAGGAATGGGGAAC 60.748 60.000 0.00 0.00 0.00 3.62
110 111 0.462047 CGGAAGAGGAATGGGGAACG 60.462 60.000 0.00 0.00 0.00 3.95
111 112 0.107165 GGAAGAGGAATGGGGAACGG 60.107 60.000 0.00 0.00 0.00 4.44
112 113 0.748367 GAAGAGGAATGGGGAACGGC 60.748 60.000 0.00 0.00 0.00 5.68
113 114 2.124278 GAGGAATGGGGAACGGCC 60.124 66.667 0.00 0.00 0.00 6.13
114 115 4.109675 AGGAATGGGGAACGGCCG 62.110 66.667 26.86 26.86 37.63 6.13
115 116 4.104183 GGAATGGGGAACGGCCGA 62.104 66.667 35.90 8.69 37.63 5.54
116 117 2.045731 GAATGGGGAACGGCCGAA 60.046 61.111 35.90 10.04 37.63 4.30
117 118 2.360726 AATGGGGAACGGCCGAAC 60.361 61.111 35.90 23.74 37.63 3.95
118 119 2.814913 GAATGGGGAACGGCCGAACT 62.815 60.000 35.90 16.14 37.63 3.01
119 120 3.622060 ATGGGGAACGGCCGAACTG 62.622 63.158 35.90 1.49 37.63 3.16
120 121 4.011517 GGGGAACGGCCGAACTGA 62.012 66.667 35.90 0.00 37.63 3.41
121 122 2.031465 GGGAACGGCCGAACTGAA 59.969 61.111 35.90 0.00 37.63 3.02
122 123 1.376812 GGGAACGGCCGAACTGAAT 60.377 57.895 35.90 3.57 37.63 2.57
123 124 1.644786 GGGAACGGCCGAACTGAATG 61.645 60.000 35.90 0.00 37.63 2.67
124 125 1.134694 GAACGGCCGAACTGAATGC 59.865 57.895 35.90 0.75 0.00 3.56
125 126 1.298859 GAACGGCCGAACTGAATGCT 61.299 55.000 35.90 0.68 0.00 3.79
126 127 0.889186 AACGGCCGAACTGAATGCTT 60.889 50.000 35.90 8.54 0.00 3.91
127 128 1.298859 ACGGCCGAACTGAATGCTTC 61.299 55.000 35.90 0.00 0.00 3.86
128 129 1.298157 CGGCCGAACTGAATGCTTCA 61.298 55.000 24.07 0.00 38.17 3.02
144 145 4.708726 GCTTCAGCACAAAGAACCATAT 57.291 40.909 0.00 0.00 41.59 1.78
145 146 5.818136 GCTTCAGCACAAAGAACCATATA 57.182 39.130 0.00 0.00 41.59 0.86
146 147 6.194796 GCTTCAGCACAAAGAACCATATAA 57.805 37.500 0.00 0.00 41.59 0.98
147 148 6.030228 GCTTCAGCACAAAGAACCATATAAC 58.970 40.000 0.00 0.00 41.59 1.89
148 149 5.794687 TCAGCACAAAGAACCATATAACG 57.205 39.130 0.00 0.00 0.00 3.18
149 150 5.242434 TCAGCACAAAGAACCATATAACGT 58.758 37.500 0.00 0.00 0.00 3.99
150 151 5.121611 TCAGCACAAAGAACCATATAACGTG 59.878 40.000 0.00 0.00 0.00 4.49
151 152 4.394920 AGCACAAAGAACCATATAACGTGG 59.605 41.667 0.00 0.00 42.55 4.94
152 153 4.393680 GCACAAAGAACCATATAACGTGGA 59.606 41.667 0.00 0.00 39.12 4.02
153 154 5.447279 GCACAAAGAACCATATAACGTGGAG 60.447 44.000 0.00 0.00 39.12 3.86
154 155 5.872617 CACAAAGAACCATATAACGTGGAGA 59.127 40.000 0.00 0.00 39.12 3.71
155 156 6.370442 CACAAAGAACCATATAACGTGGAGAA 59.630 38.462 0.00 0.00 39.12 2.87
156 157 6.938030 ACAAAGAACCATATAACGTGGAGAAA 59.062 34.615 0.00 0.00 39.12 2.52
157 158 7.446013 ACAAAGAACCATATAACGTGGAGAAAA 59.554 33.333 0.00 0.00 39.12 2.29
158 159 7.989416 AAGAACCATATAACGTGGAGAAAAA 57.011 32.000 0.00 0.00 39.12 1.94
159 160 7.611213 AGAACCATATAACGTGGAGAAAAAG 57.389 36.000 0.00 0.00 39.12 2.27
160 161 7.391620 AGAACCATATAACGTGGAGAAAAAGA 58.608 34.615 0.00 0.00 39.12 2.52
161 162 8.047310 AGAACCATATAACGTGGAGAAAAAGAT 58.953 33.333 0.00 0.00 39.12 2.40
162 163 7.553881 ACCATATAACGTGGAGAAAAAGATG 57.446 36.000 0.00 0.00 39.12 2.90
163 164 7.335627 ACCATATAACGTGGAGAAAAAGATGA 58.664 34.615 0.00 0.00 39.12 2.92
164 165 7.827236 ACCATATAACGTGGAGAAAAAGATGAA 59.173 33.333 0.00 0.00 39.12 2.57
165 166 8.673711 CCATATAACGTGGAGAAAAAGATGAAA 58.326 33.333 0.00 0.00 39.12 2.69
166 167 9.490663 CATATAACGTGGAGAAAAAGATGAAAC 57.509 33.333 0.00 0.00 0.00 2.78
167 168 4.468095 ACGTGGAGAAAAAGATGAAACG 57.532 40.909 0.00 0.00 34.85 3.60
168 169 3.226347 CGTGGAGAAAAAGATGAAACGC 58.774 45.455 0.00 0.00 0.00 4.84
169 170 3.565516 GTGGAGAAAAAGATGAAACGCC 58.434 45.455 0.00 0.00 0.00 5.68
170 171 2.556622 TGGAGAAAAAGATGAAACGCCC 59.443 45.455 0.00 0.00 0.00 6.13
171 172 2.414161 GGAGAAAAAGATGAAACGCCCG 60.414 50.000 0.00 0.00 0.00 6.13
172 173 1.068541 AGAAAAAGATGAAACGCCCGC 60.069 47.619 0.00 0.00 0.00 6.13
173 174 0.038618 AAAAAGATGAAACGCCCGCC 60.039 50.000 0.00 0.00 0.00 6.13
174 175 1.873270 AAAAGATGAAACGCCCGCCC 61.873 55.000 0.00 0.00 0.00 6.13
175 176 4.796495 AGATGAAACGCCCGCCCC 62.796 66.667 0.00 0.00 0.00 5.80
184 185 4.570874 GCCCGCCCCCTCATCTTC 62.571 72.222 0.00 0.00 0.00 2.87
185 186 3.089874 CCCGCCCCCTCATCTTCA 61.090 66.667 0.00 0.00 0.00 3.02
186 187 2.507944 CCGCCCCCTCATCTTCAG 59.492 66.667 0.00 0.00 0.00 3.02
187 188 2.066393 CCGCCCCCTCATCTTCAGA 61.066 63.158 0.00 0.00 0.00 3.27
188 189 1.144936 CGCCCCCTCATCTTCAGAC 59.855 63.158 0.00 0.00 0.00 3.51
189 190 1.529309 GCCCCCTCATCTTCAGACC 59.471 63.158 0.00 0.00 0.00 3.85
190 191 0.985490 GCCCCCTCATCTTCAGACCT 60.985 60.000 0.00 0.00 0.00 3.85
191 192 1.127343 CCCCCTCATCTTCAGACCTC 58.873 60.000 0.00 0.00 0.00 3.85
192 193 1.623557 CCCCCTCATCTTCAGACCTCA 60.624 57.143 0.00 0.00 0.00 3.86
193 194 1.484240 CCCCTCATCTTCAGACCTCAC 59.516 57.143 0.00 0.00 0.00 3.51
194 195 2.182827 CCCTCATCTTCAGACCTCACA 58.817 52.381 0.00 0.00 0.00 3.58
195 196 2.093764 CCCTCATCTTCAGACCTCACAC 60.094 54.545 0.00 0.00 0.00 3.82
196 197 2.564504 CCTCATCTTCAGACCTCACACA 59.435 50.000 0.00 0.00 0.00 3.72
197 198 3.007290 CCTCATCTTCAGACCTCACACAA 59.993 47.826 0.00 0.00 0.00 3.33
198 199 4.503817 CCTCATCTTCAGACCTCACACAAA 60.504 45.833 0.00 0.00 0.00 2.83
199 200 5.034852 TCATCTTCAGACCTCACACAAAA 57.965 39.130 0.00 0.00 0.00 2.44
200 201 5.436175 TCATCTTCAGACCTCACACAAAAA 58.564 37.500 0.00 0.00 0.00 1.94
215 216 3.443588 AAAAACAGCCCACGAGCC 58.556 55.556 0.00 0.00 0.00 4.70
216 217 2.200337 AAAAACAGCCCACGAGCCC 61.200 57.895 0.00 0.00 0.00 5.19
217 218 2.920076 AAAAACAGCCCACGAGCCCA 62.920 55.000 0.00 0.00 0.00 5.36
218 219 2.920076 AAAACAGCCCACGAGCCCAA 62.920 55.000 0.00 0.00 0.00 4.12
219 220 4.643387 ACAGCCCACGAGCCCAAC 62.643 66.667 0.00 0.00 0.00 3.77
220 221 4.641645 CAGCCCACGAGCCCAACA 62.642 66.667 0.00 0.00 0.00 3.33
221 222 3.884774 AGCCCACGAGCCCAACAA 61.885 61.111 0.00 0.00 0.00 2.83
222 223 3.670377 GCCCACGAGCCCAACAAC 61.670 66.667 0.00 0.00 0.00 3.32
223 224 2.203280 CCCACGAGCCCAACAACA 60.203 61.111 0.00 0.00 0.00 3.33
224 225 2.551912 CCCACGAGCCCAACAACAC 61.552 63.158 0.00 0.00 0.00 3.32
225 226 1.821759 CCACGAGCCCAACAACACA 60.822 57.895 0.00 0.00 0.00 3.72
226 227 1.380403 CCACGAGCCCAACAACACAA 61.380 55.000 0.00 0.00 0.00 3.33
227 228 0.453793 CACGAGCCCAACAACACAAA 59.546 50.000 0.00 0.00 0.00 2.83
228 229 0.454196 ACGAGCCCAACAACACAAAC 59.546 50.000 0.00 0.00 0.00 2.93
229 230 0.591236 CGAGCCCAACAACACAAACG 60.591 55.000 0.00 0.00 0.00 3.60
230 231 0.736053 GAGCCCAACAACACAAACGA 59.264 50.000 0.00 0.00 0.00 3.85
231 232 0.738389 AGCCCAACAACACAAACGAG 59.262 50.000 0.00 0.00 0.00 4.18
232 233 0.248866 GCCCAACAACACAAACGAGG 60.249 55.000 0.00 0.00 0.00 4.63
233 234 0.248866 CCCAACAACACAAACGAGGC 60.249 55.000 0.00 0.00 0.00 4.70
234 235 0.248866 CCAACAACACAAACGAGGCC 60.249 55.000 0.00 0.00 0.00 5.19
235 236 0.248866 CAACAACACAAACGAGGCCC 60.249 55.000 0.00 0.00 0.00 5.80
236 237 1.720694 AACAACACAAACGAGGCCCG 61.721 55.000 11.48 11.48 45.44 6.13
263 264 4.898829 AAAATGCAGAAACAAAAAGGCC 57.101 36.364 0.00 0.00 0.00 5.19
264 265 2.153366 ATGCAGAAACAAAAAGGCCG 57.847 45.000 0.00 0.00 0.00 6.13
265 266 0.529555 TGCAGAAACAAAAAGGCCGC 60.530 50.000 0.00 0.00 0.00 6.53
266 267 0.249447 GCAGAAACAAAAAGGCCGCT 60.249 50.000 0.00 0.00 0.00 5.52
267 268 1.000717 GCAGAAACAAAAAGGCCGCTA 60.001 47.619 0.00 0.00 0.00 4.26
268 269 2.544903 GCAGAAACAAAAAGGCCGCTAA 60.545 45.455 0.00 0.00 0.00 3.09
269 270 3.049912 CAGAAACAAAAAGGCCGCTAAC 58.950 45.455 0.00 0.00 0.00 2.34
270 271 2.691011 AGAAACAAAAAGGCCGCTAACA 59.309 40.909 0.00 0.00 0.00 2.41
271 272 3.131400 AGAAACAAAAAGGCCGCTAACAA 59.869 39.130 0.00 0.00 0.00 2.83
272 273 2.793278 ACAAAAAGGCCGCTAACAAG 57.207 45.000 0.00 0.00 0.00 3.16
273 274 2.303175 ACAAAAAGGCCGCTAACAAGA 58.697 42.857 0.00 0.00 0.00 3.02
274 275 2.890945 ACAAAAAGGCCGCTAACAAGAT 59.109 40.909 0.00 0.00 0.00 2.40
275 276 3.244976 CAAAAAGGCCGCTAACAAGATG 58.755 45.455 0.00 0.00 0.00 2.90
276 277 1.463674 AAAGGCCGCTAACAAGATGG 58.536 50.000 0.00 0.00 0.00 3.51
277 278 0.394352 AAGGCCGCTAACAAGATGGG 60.394 55.000 0.00 0.00 0.00 4.00
278 279 2.481471 GGCCGCTAACAAGATGGGC 61.481 63.158 0.00 0.00 39.79 5.36
279 280 2.481471 GCCGCTAACAAGATGGGCC 61.481 63.158 0.00 0.00 34.54 5.80
280 281 2.180204 CCGCTAACAAGATGGGCCG 61.180 63.158 0.00 0.00 0.00 6.13
281 282 2.823829 CGCTAACAAGATGGGCCGC 61.824 63.158 0.00 0.00 0.00 6.53
282 283 2.823829 GCTAACAAGATGGGCCGCG 61.824 63.158 0.00 0.00 0.00 6.46
283 284 2.822255 TAACAAGATGGGCCGCGC 60.822 61.111 0.00 0.00 0.00 6.86
284 285 3.613877 TAACAAGATGGGCCGCGCA 62.614 57.895 13.06 13.06 0.00 6.09
291 292 4.529219 TGGGCCGCGCACATAGAG 62.529 66.667 8.75 0.00 36.87 2.43
292 293 4.221422 GGGCCGCGCACATAGAGA 62.221 66.667 8.75 0.00 0.00 3.10
293 294 2.202878 GGCCGCGCACATAGAGAA 60.203 61.111 8.75 0.00 0.00 2.87
294 295 2.526120 GGCCGCGCACATAGAGAAC 61.526 63.158 8.75 0.00 0.00 3.01
295 296 2.860628 GCCGCGCACATAGAGAACG 61.861 63.158 8.75 0.00 0.00 3.95
296 297 1.226575 CCGCGCACATAGAGAACGA 60.227 57.895 8.75 0.00 0.00 3.85
297 298 1.472276 CCGCGCACATAGAGAACGAC 61.472 60.000 8.75 0.00 0.00 4.34
298 299 0.796870 CGCGCACATAGAGAACGACA 60.797 55.000 8.75 0.00 0.00 4.35
299 300 1.346365 GCGCACATAGAGAACGACAA 58.654 50.000 0.30 0.00 0.00 3.18
300 301 1.321743 GCGCACATAGAGAACGACAAG 59.678 52.381 0.30 0.00 0.00 3.16
301 302 1.321743 CGCACATAGAGAACGACAAGC 59.678 52.381 0.00 0.00 0.00 4.01
303 304 2.863739 CACATAGAGAACGACAAGCGA 58.136 47.619 0.00 0.00 44.57 4.93
304 305 2.594654 CACATAGAGAACGACAAGCGAC 59.405 50.000 0.00 0.00 44.57 5.19
305 306 2.228103 ACATAGAGAACGACAAGCGACA 59.772 45.455 0.00 0.00 44.57 4.35
306 307 2.613730 TAGAGAACGACAAGCGACAG 57.386 50.000 0.00 0.00 44.57 3.51
307 308 0.039074 AGAGAACGACAAGCGACAGG 60.039 55.000 0.00 0.00 44.57 4.00
308 309 0.039437 GAGAACGACAAGCGACAGGA 60.039 55.000 0.00 0.00 44.57 3.86
309 310 0.039074 AGAACGACAAGCGACAGGAG 60.039 55.000 0.00 0.00 44.57 3.69
310 311 1.006102 AACGACAAGCGACAGGAGG 60.006 57.895 0.00 0.00 44.57 4.30
311 312 2.125912 CGACAAGCGACAGGAGGG 60.126 66.667 0.00 0.00 44.57 4.30
312 313 2.266055 GACAAGCGACAGGAGGGG 59.734 66.667 0.00 0.00 0.00 4.79
313 314 2.203788 ACAAGCGACAGGAGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
314 315 1.827399 GACAAGCGACAGGAGGGGAA 61.827 60.000 0.00 0.00 0.00 3.97
315 316 1.376037 CAAGCGACAGGAGGGGAAC 60.376 63.158 0.00 0.00 0.00 3.62
316 317 2.943978 AAGCGACAGGAGGGGAACG 61.944 63.158 0.00 0.00 0.00 3.95
318 319 3.691342 CGACAGGAGGGGAACGCA 61.691 66.667 0.00 0.00 46.88 5.24
319 320 2.047179 GACAGGAGGGGAACGCAC 60.047 66.667 0.00 0.00 46.88 5.34
324 325 2.112297 GAGGGGAACGCACCACAA 59.888 61.111 3.64 0.00 46.88 3.33
325 326 2.203294 AGGGGAACGCACCACAAC 60.203 61.111 3.64 0.00 46.88 3.32
326 327 3.656045 GGGGAACGCACCACAACG 61.656 66.667 1.12 0.00 42.57 4.10
327 328 2.589442 GGGAACGCACCACAACGA 60.589 61.111 0.00 0.00 0.00 3.85
328 329 2.629763 GGAACGCACCACAACGAC 59.370 61.111 0.00 0.00 0.00 4.34
329 330 2.174969 GGAACGCACCACAACGACA 61.175 57.895 0.00 0.00 0.00 4.35
330 331 1.707239 GGAACGCACCACAACGACAA 61.707 55.000 0.00 0.00 0.00 3.18
331 332 0.097325 GAACGCACCACAACGACAAA 59.903 50.000 0.00 0.00 0.00 2.83
332 333 0.522180 AACGCACCACAACGACAAAA 59.478 45.000 0.00 0.00 0.00 2.44
333 334 0.179184 ACGCACCACAACGACAAAAC 60.179 50.000 0.00 0.00 0.00 2.43
334 335 0.179187 CGCACCACAACGACAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
335 336 1.729472 CGCACCACAACGACAAAACAA 60.729 47.619 0.00 0.00 0.00 2.83
336 337 1.917303 GCACCACAACGACAAAACAAG 59.083 47.619 0.00 0.00 0.00 3.16
337 338 1.917303 CACCACAACGACAAAACAAGC 59.083 47.619 0.00 0.00 0.00 4.01
338 339 1.816224 ACCACAACGACAAAACAAGCT 59.184 42.857 0.00 0.00 0.00 3.74
339 340 3.011119 ACCACAACGACAAAACAAGCTA 58.989 40.909 0.00 0.00 0.00 3.32
340 341 3.064820 ACCACAACGACAAAACAAGCTAG 59.935 43.478 0.00 0.00 0.00 3.42
341 342 3.311322 CCACAACGACAAAACAAGCTAGA 59.689 43.478 0.00 0.00 0.00 2.43
342 343 4.518217 CACAACGACAAAACAAGCTAGAG 58.482 43.478 0.00 0.00 0.00 2.43
343 344 3.002348 ACAACGACAAAACAAGCTAGAGC 59.998 43.478 0.00 0.00 42.49 4.09
357 358 3.711086 GCTAGAGCGAATCTTGATGACA 58.289 45.455 0.00 0.00 39.64 3.58
358 359 3.735240 GCTAGAGCGAATCTTGATGACAG 59.265 47.826 0.00 0.00 39.64 3.51
359 360 3.176552 AGAGCGAATCTTGATGACAGG 57.823 47.619 0.00 0.00 32.99 4.00
360 361 2.762887 AGAGCGAATCTTGATGACAGGA 59.237 45.455 0.00 0.00 32.99 3.86
361 362 2.863137 GAGCGAATCTTGATGACAGGAC 59.137 50.000 0.00 0.00 35.08 3.85
362 363 1.590238 GCGAATCTTGATGACAGGACG 59.410 52.381 0.00 0.00 35.08 4.79
363 364 2.735444 GCGAATCTTGATGACAGGACGA 60.735 50.000 0.00 0.00 35.08 4.20
364 365 3.111838 CGAATCTTGATGACAGGACGAG 58.888 50.000 0.00 0.00 35.08 4.18
365 366 3.181496 CGAATCTTGATGACAGGACGAGA 60.181 47.826 0.00 0.00 35.08 4.04
366 367 4.498850 CGAATCTTGATGACAGGACGAGAT 60.499 45.833 0.00 0.00 35.08 2.75
367 368 4.582701 ATCTTGATGACAGGACGAGATC 57.417 45.455 0.00 0.00 35.08 2.75
377 378 3.768633 GACGAGATCCAATGGCTGT 57.231 52.632 0.00 0.00 0.00 4.40
378 379 1.293924 GACGAGATCCAATGGCTGTG 58.706 55.000 0.00 0.00 0.00 3.66
379 380 0.107508 ACGAGATCCAATGGCTGTGG 60.108 55.000 0.00 1.04 37.51 4.17
417 418 2.285442 CCCTCCCCGTCCTCCTTT 60.285 66.667 0.00 0.00 0.00 3.11
418 419 1.002533 CCCTCCCCGTCCTCCTTTA 59.997 63.158 0.00 0.00 0.00 1.85
419 420 1.335882 CCCTCCCCGTCCTCCTTTAC 61.336 65.000 0.00 0.00 0.00 2.01
420 421 1.335882 CCTCCCCGTCCTCCTTTACC 61.336 65.000 0.00 0.00 0.00 2.85
421 422 0.325390 CTCCCCGTCCTCCTTTACCT 60.325 60.000 0.00 0.00 0.00 3.08
422 423 0.117742 TCCCCGTCCTCCTTTACCTT 59.882 55.000 0.00 0.00 0.00 3.50
423 424 0.252197 CCCCGTCCTCCTTTACCTTG 59.748 60.000 0.00 0.00 0.00 3.61
424 425 0.392595 CCCGTCCTCCTTTACCTTGC 60.393 60.000 0.00 0.00 0.00 4.01
425 426 0.392595 CCGTCCTCCTTTACCTTGCC 60.393 60.000 0.00 0.00 0.00 4.52
426 427 0.739813 CGTCCTCCTTTACCTTGCCG 60.740 60.000 0.00 0.00 0.00 5.69
427 428 0.611714 GTCCTCCTTTACCTTGCCGA 59.388 55.000 0.00 0.00 0.00 5.54
428 429 0.611714 TCCTCCTTTACCTTGCCGAC 59.388 55.000 0.00 0.00 0.00 4.79
429 430 0.613777 CCTCCTTTACCTTGCCGACT 59.386 55.000 0.00 0.00 0.00 4.18
430 431 1.405661 CCTCCTTTACCTTGCCGACTC 60.406 57.143 0.00 0.00 0.00 3.36
431 432 1.275291 CTCCTTTACCTTGCCGACTCA 59.725 52.381 0.00 0.00 0.00 3.41
432 433 1.695242 TCCTTTACCTTGCCGACTCAA 59.305 47.619 0.00 0.00 0.00 3.02
458 459 2.833582 CCTCCGCCGCTCCTCTTA 60.834 66.667 0.00 0.00 0.00 2.10
463 464 2.187163 GCCGCTCCTCTTACACCC 59.813 66.667 0.00 0.00 0.00 4.61
468 469 1.908483 CTCCTCTTACACCCAGCCC 59.092 63.158 0.00 0.00 0.00 5.19
676 762 2.713531 ATTGTTTCGGCAGGCCACCT 62.714 55.000 5.01 0.00 35.37 4.00
759 851 1.397390 CCTGCATCAAAGATGGCCCC 61.397 60.000 0.00 0.00 0.00 5.80
938 1030 0.460311 AGGACGGGCTTGAAGATACG 59.540 55.000 0.00 0.00 0.00 3.06
939 1031 0.529992 GGACGGGCTTGAAGATACGG 60.530 60.000 0.00 0.00 0.00 4.02
941 1033 1.227556 CGGGCTTGAAGATACGGGG 60.228 63.158 0.00 0.00 0.00 5.73
942 1034 1.912971 GGGCTTGAAGATACGGGGT 59.087 57.895 0.00 0.00 0.00 4.95
943 1035 0.463833 GGGCTTGAAGATACGGGGTG 60.464 60.000 0.00 0.00 0.00 4.61
944 1036 0.463833 GGCTTGAAGATACGGGGTGG 60.464 60.000 0.00 0.00 0.00 4.61
946 1038 1.141053 GCTTGAAGATACGGGGTGGAT 59.859 52.381 0.00 0.00 0.00 3.41
948 1040 2.168458 TGAAGATACGGGGTGGATGA 57.832 50.000 0.00 0.00 0.00 2.92
952 1044 1.074471 ATACGGGGTGGATGAGGCT 60.074 57.895 0.00 0.00 0.00 4.58
954 1046 2.815684 TACGGGGTGGATGAGGCTGT 62.816 60.000 0.00 0.00 0.00 4.40
955 1047 2.273449 GGGGTGGATGAGGCTGTG 59.727 66.667 0.00 0.00 0.00 3.66
957 1049 1.685224 GGGTGGATGAGGCTGTGAA 59.315 57.895 0.00 0.00 0.00 3.18
959 1051 1.021390 GGTGGATGAGGCTGTGAACG 61.021 60.000 0.00 0.00 0.00 3.95
960 1052 0.320771 GTGGATGAGGCTGTGAACGT 60.321 55.000 0.00 0.00 0.00 3.99
961 1053 0.320683 TGGATGAGGCTGTGAACGTG 60.321 55.000 0.00 0.00 0.00 4.49
962 1054 1.639298 GGATGAGGCTGTGAACGTGC 61.639 60.000 0.00 0.00 0.00 5.34
963 1055 0.671781 GATGAGGCTGTGAACGTGCT 60.672 55.000 0.00 0.00 0.00 4.40
964 1056 0.952497 ATGAGGCTGTGAACGTGCTG 60.952 55.000 0.00 0.00 0.00 4.41
965 1057 2.959357 GAGGCTGTGAACGTGCTGC 61.959 63.158 0.00 1.87 0.00 5.25
966 1058 2.974698 GGCTGTGAACGTGCTGCT 60.975 61.111 0.00 0.00 0.00 4.24
968 1060 1.082496 GCTGTGAACGTGCTGCTTC 60.082 57.895 0.00 0.00 0.00 3.86
969 1061 1.775039 GCTGTGAACGTGCTGCTTCA 61.775 55.000 0.00 0.00 0.00 3.02
971 1063 2.013807 GTGAACGTGCTGCTTCACA 58.986 52.632 21.33 5.91 43.86 3.58
1001 1111 0.588252 GTGAACGTGCTGCTTCACAT 59.412 50.000 21.33 0.00 43.86 3.21
1108 4442 1.592131 CTCGAGCTGCTCCAGATGC 60.592 63.158 22.97 0.00 32.44 3.91
1121 4455 2.517959 CCAGATGCTGGTGGAAAAAGA 58.482 47.619 5.31 0.00 45.82 2.52
1143 4477 1.208052 GGTGCCTGCTCTCTCAATGTA 59.792 52.381 0.00 0.00 0.00 2.29
1170 4504 4.805272 GCATATAGCACAGTCATCCATGGT 60.805 45.833 12.58 0.00 44.79 3.55
1191 4525 4.543692 GTTTCTTTAAGGAAGGCGAAACC 58.456 43.478 0.00 0.00 35.98 3.27
1487 4823 5.235850 TGCAACTCCTTAATGACTTACCA 57.764 39.130 0.00 0.00 0.00 3.25
1723 5065 6.176896 TCTAAACGTGGAATGATGGATGAAA 58.823 36.000 0.00 0.00 0.00 2.69
1735 5077 8.929260 AATGATGGATGAAACTATGCTGATAA 57.071 30.769 0.00 0.00 0.00 1.75
2098 5444 4.333926 GTGAGAGGCCTGATGACATTTTAC 59.666 45.833 12.00 0.00 0.00 2.01
2271 5617 4.963318 TGGTTTGACTCTGTTCAGAGAT 57.037 40.909 29.07 16.79 39.14 2.75
2275 5621 5.814705 GGTTTGACTCTGTTCAGAGATATGG 59.185 44.000 29.07 9.22 39.14 2.74
2304 5650 6.867662 AAGAGAATTAAACCTGACACTGTG 57.132 37.500 6.19 6.19 0.00 3.66
2576 5923 2.280308 ACCCTAAGACTAATGGGCCA 57.720 50.000 9.61 9.61 43.25 5.36
2668 6016 7.565680 CCTAACCAACTTATAACCATGACTCT 58.434 38.462 0.00 0.00 0.00 3.24
2744 6092 9.586435 GTTTTATTATTCTCAACCTGAAATGGG 57.414 33.333 0.00 0.00 0.00 4.00
2752 6106 1.383799 CCTGAAATGGGCTGGGACA 59.616 57.895 0.00 0.00 0.00 4.02
2754 6108 0.251297 CTGAAATGGGCTGGGACACA 60.251 55.000 0.00 0.00 0.00 3.72
2798 6153 2.574929 GGACACCATCCGCACGTA 59.425 61.111 0.00 0.00 37.88 3.57
2827 6182 1.019278 CGCGTACAGCCACTTGGATT 61.019 55.000 0.00 0.00 44.76 3.01
2828 6183 1.165270 GCGTACAGCCACTTGGATTT 58.835 50.000 0.00 0.00 40.81 2.17
3022 6378 1.672356 CCGCACAGGAAAGAGTGGG 60.672 63.158 0.00 0.00 45.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.307097 GGAGACGCATCGTAGGTAGT 58.693 55.000 0.00 0.00 41.37 2.73
3 4 0.182061 AGGGAGACGCATCGTAGGTA 59.818 55.000 0.00 0.00 41.37 3.08
4 5 1.076923 AGGGAGACGCATCGTAGGT 60.077 57.895 0.00 0.00 41.37 3.08
8 9 2.122167 GGAGAGGGAGACGCATCGT 61.122 63.158 0.00 0.00 45.10 3.73
9 10 1.388065 AAGGAGAGGGAGACGCATCG 61.388 60.000 0.00 0.00 0.00 3.84
10 11 0.387565 GAAGGAGAGGGAGACGCATC 59.612 60.000 0.00 0.00 0.00 3.91
11 12 0.032615 AGAAGGAGAGGGAGACGCAT 60.033 55.000 0.00 0.00 0.00 4.73
12 13 0.681564 GAGAAGGAGAGGGAGACGCA 60.682 60.000 0.00 0.00 0.00 5.24
13 14 0.395173 AGAGAAGGAGAGGGAGACGC 60.395 60.000 0.00 0.00 0.00 5.19
14 15 1.675552 GAGAGAAGGAGAGGGAGACG 58.324 60.000 0.00 0.00 0.00 4.18
15 16 1.411074 GGGAGAGAAGGAGAGGGAGAC 60.411 61.905 0.00 0.00 0.00 3.36
16 17 0.930726 GGGAGAGAAGGAGAGGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
17 18 0.933700 AGGGAGAGAAGGAGAGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
18 19 0.930726 GAGGGAGAGAAGGAGAGGGA 59.069 60.000 0.00 0.00 0.00 4.20
19 20 0.105709 GGAGGGAGAGAAGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
20 21 0.633921 TGGAGGGAGAGAAGGAGAGG 59.366 60.000 0.00 0.00 0.00 3.69
21 22 1.568597 TCTGGAGGGAGAGAAGGAGAG 59.431 57.143 0.00 0.00 0.00 3.20
22 23 1.687492 TCTGGAGGGAGAGAAGGAGA 58.313 55.000 0.00 0.00 0.00 3.71
23 24 2.541233 TTCTGGAGGGAGAGAAGGAG 57.459 55.000 0.00 0.00 0.00 3.69
24 25 3.379452 GAATTCTGGAGGGAGAGAAGGA 58.621 50.000 0.00 0.00 31.83 3.36
25 26 2.102252 CGAATTCTGGAGGGAGAGAAGG 59.898 54.545 3.52 0.00 31.83 3.46
26 27 2.482839 GCGAATTCTGGAGGGAGAGAAG 60.483 54.545 3.52 0.00 31.83 2.85
27 28 1.482593 GCGAATTCTGGAGGGAGAGAA 59.517 52.381 3.52 0.00 32.83 2.87
28 29 1.115467 GCGAATTCTGGAGGGAGAGA 58.885 55.000 3.52 0.00 0.00 3.10
29 30 0.105778 GGCGAATTCTGGAGGGAGAG 59.894 60.000 3.52 0.00 0.00 3.20
30 31 0.325671 AGGCGAATTCTGGAGGGAGA 60.326 55.000 3.52 0.00 0.00 3.71
31 32 0.179062 CAGGCGAATTCTGGAGGGAG 60.179 60.000 3.52 0.00 0.00 4.30
32 33 1.907739 CAGGCGAATTCTGGAGGGA 59.092 57.895 3.52 0.00 0.00 4.20
33 34 1.821332 GCAGGCGAATTCTGGAGGG 60.821 63.158 3.52 0.00 33.16 4.30
34 35 2.176273 CGCAGGCGAATTCTGGAGG 61.176 63.158 8.15 0.00 42.83 4.30
35 36 2.817423 GCGCAGGCGAATTCTGGAG 61.817 63.158 18.96 0.00 42.83 3.86
36 37 2.819595 GCGCAGGCGAATTCTGGA 60.820 61.111 18.96 0.00 42.83 3.86
60 61 4.514441 CCATTTTCTATCTAGCAGCTGGTG 59.486 45.833 28.10 17.20 0.00 4.17
61 62 4.445448 CCCATTTTCTATCTAGCAGCTGGT 60.445 45.833 23.72 23.72 0.00 4.00
62 63 4.070716 CCCATTTTCTATCTAGCAGCTGG 58.929 47.826 17.12 1.04 0.00 4.85
63 64 4.070716 CCCCATTTTCTATCTAGCAGCTG 58.929 47.826 10.11 10.11 0.00 4.24
64 65 3.976654 TCCCCATTTTCTATCTAGCAGCT 59.023 43.478 0.00 0.00 0.00 4.24
65 66 4.357918 TCCCCATTTTCTATCTAGCAGC 57.642 45.455 0.00 0.00 0.00 5.25
66 67 4.752101 CGTTCCCCATTTTCTATCTAGCAG 59.248 45.833 0.00 0.00 0.00 4.24
67 68 4.444306 CCGTTCCCCATTTTCTATCTAGCA 60.444 45.833 0.00 0.00 0.00 3.49
68 69 4.065789 CCGTTCCCCATTTTCTATCTAGC 58.934 47.826 0.00 0.00 0.00 3.42
69 70 4.065789 GCCGTTCCCCATTTTCTATCTAG 58.934 47.826 0.00 0.00 0.00 2.43
70 71 3.493699 CGCCGTTCCCCATTTTCTATCTA 60.494 47.826 0.00 0.00 0.00 1.98
71 72 2.745152 CGCCGTTCCCCATTTTCTATCT 60.745 50.000 0.00 0.00 0.00 1.98
72 73 1.602377 CGCCGTTCCCCATTTTCTATC 59.398 52.381 0.00 0.00 0.00 2.08
73 74 1.675552 CGCCGTTCCCCATTTTCTAT 58.324 50.000 0.00 0.00 0.00 1.98
74 75 0.393267 CCGCCGTTCCCCATTTTCTA 60.393 55.000 0.00 0.00 0.00 2.10
75 76 1.677633 CCGCCGTTCCCCATTTTCT 60.678 57.895 0.00 0.00 0.00 2.52
76 77 1.245376 TTCCGCCGTTCCCCATTTTC 61.245 55.000 0.00 0.00 0.00 2.29
77 78 1.228613 TTCCGCCGTTCCCCATTTT 60.229 52.632 0.00 0.00 0.00 1.82
78 79 1.677633 CTTCCGCCGTTCCCCATTT 60.678 57.895 0.00 0.00 0.00 2.32
79 80 2.045340 CTTCCGCCGTTCCCCATT 60.045 61.111 0.00 0.00 0.00 3.16
80 81 3.006728 TCTTCCGCCGTTCCCCAT 61.007 61.111 0.00 0.00 0.00 4.00
81 82 3.702048 CTCTTCCGCCGTTCCCCA 61.702 66.667 0.00 0.00 0.00 4.96
82 83 4.468689 CCTCTTCCGCCGTTCCCC 62.469 72.222 0.00 0.00 0.00 4.81
83 84 2.253403 ATTCCTCTTCCGCCGTTCCC 62.253 60.000 0.00 0.00 0.00 3.97
84 85 1.090052 CATTCCTCTTCCGCCGTTCC 61.090 60.000 0.00 0.00 0.00 3.62
85 86 1.090052 CCATTCCTCTTCCGCCGTTC 61.090 60.000 0.00 0.00 0.00 3.95
86 87 1.078426 CCATTCCTCTTCCGCCGTT 60.078 57.895 0.00 0.00 0.00 4.44
87 88 2.584608 CCATTCCTCTTCCGCCGT 59.415 61.111 0.00 0.00 0.00 5.68
88 89 2.203070 CCCATTCCTCTTCCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
89 90 1.921869 TTCCCCATTCCTCTTCCGCC 61.922 60.000 0.00 0.00 0.00 6.13
90 91 0.748367 GTTCCCCATTCCTCTTCCGC 60.748 60.000 0.00 0.00 0.00 5.54
91 92 0.462047 CGTTCCCCATTCCTCTTCCG 60.462 60.000 0.00 0.00 0.00 4.30
92 93 0.107165 CCGTTCCCCATTCCTCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
93 94 0.748367 GCCGTTCCCCATTCCTCTTC 60.748 60.000 0.00 0.00 0.00 2.87
94 95 1.303282 GCCGTTCCCCATTCCTCTT 59.697 57.895 0.00 0.00 0.00 2.85
95 96 2.680370 GGCCGTTCCCCATTCCTCT 61.680 63.158 0.00 0.00 0.00 3.69
96 97 2.124278 GGCCGTTCCCCATTCCTC 60.124 66.667 0.00 0.00 0.00 3.71
97 98 4.109675 CGGCCGTTCCCCATTCCT 62.110 66.667 19.50 0.00 0.00 3.36
98 99 3.631952 TTCGGCCGTTCCCCATTCC 62.632 63.158 27.15 0.00 0.00 3.01
99 100 2.045731 TTCGGCCGTTCCCCATTC 60.046 61.111 27.15 0.00 0.00 2.67
100 101 2.360726 GTTCGGCCGTTCCCCATT 60.361 61.111 27.15 0.00 0.00 3.16
101 102 3.327404 AGTTCGGCCGTTCCCCAT 61.327 61.111 27.15 2.35 0.00 4.00
102 103 4.323477 CAGTTCGGCCGTTCCCCA 62.323 66.667 27.15 0.06 0.00 4.96
103 104 2.814913 ATTCAGTTCGGCCGTTCCCC 62.815 60.000 27.15 9.49 0.00 4.81
104 105 1.376812 ATTCAGTTCGGCCGTTCCC 60.377 57.895 27.15 11.37 0.00 3.97
105 106 1.794222 CATTCAGTTCGGCCGTTCC 59.206 57.895 27.15 14.03 0.00 3.62
106 107 1.134694 GCATTCAGTTCGGCCGTTC 59.865 57.895 27.15 18.78 0.00 3.95
107 108 0.889186 AAGCATTCAGTTCGGCCGTT 60.889 50.000 27.15 9.53 0.00 4.44
108 109 1.298859 GAAGCATTCAGTTCGGCCGT 61.299 55.000 27.15 1.97 46.62 5.68
109 110 1.425428 GAAGCATTCAGTTCGGCCG 59.575 57.895 22.12 22.12 46.62 6.13
123 124 4.708726 ATATGGTTCTTTGTGCTGAAGC 57.291 40.909 0.00 0.00 40.02 3.86
124 125 6.128282 ACGTTATATGGTTCTTTGTGCTGAAG 60.128 38.462 0.00 0.00 0.00 3.02
125 126 5.703592 ACGTTATATGGTTCTTTGTGCTGAA 59.296 36.000 0.00 0.00 0.00 3.02
126 127 5.121611 CACGTTATATGGTTCTTTGTGCTGA 59.878 40.000 0.00 0.00 0.00 4.26
127 128 5.323900 CACGTTATATGGTTCTTTGTGCTG 58.676 41.667 0.00 0.00 0.00 4.41
128 129 4.394920 CCACGTTATATGGTTCTTTGTGCT 59.605 41.667 0.00 0.00 32.08 4.40
129 130 4.393680 TCCACGTTATATGGTTCTTTGTGC 59.606 41.667 0.00 0.00 38.47 4.57
130 131 5.872617 TCTCCACGTTATATGGTTCTTTGTG 59.127 40.000 0.00 0.00 38.47 3.33
131 132 6.045072 TCTCCACGTTATATGGTTCTTTGT 57.955 37.500 0.00 0.00 38.47 2.83
132 133 6.978343 TTCTCCACGTTATATGGTTCTTTG 57.022 37.500 0.00 0.00 38.47 2.77
133 134 7.989416 TTTTCTCCACGTTATATGGTTCTTT 57.011 32.000 0.00 0.00 38.47 2.52
134 135 7.881232 TCTTTTTCTCCACGTTATATGGTTCTT 59.119 33.333 0.00 0.00 38.47 2.52
135 136 7.391620 TCTTTTTCTCCACGTTATATGGTTCT 58.608 34.615 0.00 0.00 38.47 3.01
136 137 7.605410 TCTTTTTCTCCACGTTATATGGTTC 57.395 36.000 0.00 0.00 38.47 3.62
137 138 7.827236 TCATCTTTTTCTCCACGTTATATGGTT 59.173 33.333 0.00 0.00 38.47 3.67
138 139 7.335627 TCATCTTTTTCTCCACGTTATATGGT 58.664 34.615 0.00 0.00 38.47 3.55
139 140 7.786178 TCATCTTTTTCTCCACGTTATATGG 57.214 36.000 0.00 0.00 38.71 2.74
140 141 9.490663 GTTTCATCTTTTTCTCCACGTTATATG 57.509 33.333 0.00 0.00 0.00 1.78
141 142 8.388103 CGTTTCATCTTTTTCTCCACGTTATAT 58.612 33.333 0.00 0.00 0.00 0.86
142 143 7.622672 GCGTTTCATCTTTTTCTCCACGTTATA 60.623 37.037 0.00 0.00 0.00 0.98
143 144 6.599437 CGTTTCATCTTTTTCTCCACGTTAT 58.401 36.000 0.00 0.00 0.00 1.89
144 145 5.559417 GCGTTTCATCTTTTTCTCCACGTTA 60.559 40.000 0.00 0.00 0.00 3.18
145 146 4.788521 GCGTTTCATCTTTTTCTCCACGTT 60.789 41.667 0.00 0.00 0.00 3.99
146 147 3.303791 GCGTTTCATCTTTTTCTCCACGT 60.304 43.478 0.00 0.00 0.00 4.49
147 148 3.226347 GCGTTTCATCTTTTTCTCCACG 58.774 45.455 0.00 0.00 0.00 4.94
148 149 3.565516 GGCGTTTCATCTTTTTCTCCAC 58.434 45.455 0.00 0.00 0.00 4.02
149 150 2.556622 GGGCGTTTCATCTTTTTCTCCA 59.443 45.455 0.00 0.00 0.00 3.86
150 151 2.414161 CGGGCGTTTCATCTTTTTCTCC 60.414 50.000 0.00 0.00 0.00 3.71
151 152 2.851534 CGGGCGTTTCATCTTTTTCTC 58.148 47.619 0.00 0.00 0.00 2.87
152 153 1.068541 GCGGGCGTTTCATCTTTTTCT 60.069 47.619 0.00 0.00 0.00 2.52
153 154 1.336877 GCGGGCGTTTCATCTTTTTC 58.663 50.000 0.00 0.00 0.00 2.29
154 155 0.038618 GGCGGGCGTTTCATCTTTTT 60.039 50.000 0.00 0.00 0.00 1.94
155 156 1.584495 GGCGGGCGTTTCATCTTTT 59.416 52.632 0.00 0.00 0.00 2.27
156 157 2.340328 GGGCGGGCGTTTCATCTTT 61.340 57.895 0.00 0.00 0.00 2.52
157 158 2.750237 GGGCGGGCGTTTCATCTT 60.750 61.111 0.00 0.00 0.00 2.40
158 159 4.796495 GGGGCGGGCGTTTCATCT 62.796 66.667 0.00 0.00 0.00 2.90
167 168 4.570874 GAAGATGAGGGGGCGGGC 62.571 72.222 0.00 0.00 0.00 6.13
168 169 3.089874 TGAAGATGAGGGGGCGGG 61.090 66.667 0.00 0.00 0.00 6.13
169 170 2.066393 TCTGAAGATGAGGGGGCGG 61.066 63.158 0.00 0.00 0.00 6.13
170 171 1.144936 GTCTGAAGATGAGGGGGCG 59.855 63.158 0.00 0.00 0.00 6.13
171 172 0.985490 AGGTCTGAAGATGAGGGGGC 60.985 60.000 0.00 0.00 0.00 5.80
172 173 1.127343 GAGGTCTGAAGATGAGGGGG 58.873 60.000 0.00 0.00 0.00 5.40
173 174 1.484240 GTGAGGTCTGAAGATGAGGGG 59.516 57.143 0.00 0.00 0.00 4.79
174 175 2.093764 GTGTGAGGTCTGAAGATGAGGG 60.094 54.545 0.00 0.00 0.00 4.30
175 176 2.564504 TGTGTGAGGTCTGAAGATGAGG 59.435 50.000 0.00 0.00 0.00 3.86
176 177 3.949842 TGTGTGAGGTCTGAAGATGAG 57.050 47.619 0.00 0.00 0.00 2.90
177 178 4.687901 TTTGTGTGAGGTCTGAAGATGA 57.312 40.909 0.00 0.00 0.00 2.92
178 179 5.756195 TTTTTGTGTGAGGTCTGAAGATG 57.244 39.130 0.00 0.00 0.00 2.90
198 199 2.200337 GGGCTCGTGGGCTGTTTTT 61.200 57.895 0.00 0.00 40.65 1.94
199 200 2.597510 GGGCTCGTGGGCTGTTTT 60.598 61.111 0.00 0.00 40.65 2.43
200 201 3.429372 TTGGGCTCGTGGGCTGTTT 62.429 57.895 0.00 0.00 40.65 2.83
201 202 3.884774 TTGGGCTCGTGGGCTGTT 61.885 61.111 0.00 0.00 40.65 3.16
202 203 4.643387 GTTGGGCTCGTGGGCTGT 62.643 66.667 0.00 0.00 40.65 4.40
203 204 4.641645 TGTTGGGCTCGTGGGCTG 62.642 66.667 0.00 0.00 40.65 4.85
204 205 3.884774 TTGTTGGGCTCGTGGGCT 61.885 61.111 0.00 0.00 40.65 5.19
205 206 3.670377 GTTGTTGGGCTCGTGGGC 61.670 66.667 0.00 0.00 40.05 5.36
206 207 2.203280 TGTTGTTGGGCTCGTGGG 60.203 61.111 0.00 0.00 0.00 4.61
207 208 1.380403 TTGTGTTGTTGGGCTCGTGG 61.380 55.000 0.00 0.00 0.00 4.94
208 209 0.453793 TTTGTGTTGTTGGGCTCGTG 59.546 50.000 0.00 0.00 0.00 4.35
209 210 0.454196 GTTTGTGTTGTTGGGCTCGT 59.546 50.000 0.00 0.00 0.00 4.18
210 211 0.591236 CGTTTGTGTTGTTGGGCTCG 60.591 55.000 0.00 0.00 0.00 5.03
211 212 0.736053 TCGTTTGTGTTGTTGGGCTC 59.264 50.000 0.00 0.00 0.00 4.70
212 213 0.738389 CTCGTTTGTGTTGTTGGGCT 59.262 50.000 0.00 0.00 0.00 5.19
213 214 0.248866 CCTCGTTTGTGTTGTTGGGC 60.249 55.000 0.00 0.00 0.00 5.36
214 215 0.248866 GCCTCGTTTGTGTTGTTGGG 60.249 55.000 0.00 0.00 0.00 4.12
215 216 0.248866 GGCCTCGTTTGTGTTGTTGG 60.249 55.000 0.00 0.00 0.00 3.77
216 217 0.248866 GGGCCTCGTTTGTGTTGTTG 60.249 55.000 0.84 0.00 0.00 3.33
217 218 1.720694 CGGGCCTCGTTTGTGTTGTT 61.721 55.000 0.84 0.00 0.00 2.83
218 219 2.184167 CGGGCCTCGTTTGTGTTGT 61.184 57.895 0.84 0.00 0.00 3.32
219 220 2.637025 CGGGCCTCGTTTGTGTTG 59.363 61.111 0.84 0.00 0.00 3.33
241 242 4.201901 CGGCCTTTTTGTTTCTGCATTTTT 60.202 37.500 0.00 0.00 0.00 1.94
242 243 3.312146 CGGCCTTTTTGTTTCTGCATTTT 59.688 39.130 0.00 0.00 0.00 1.82
243 244 2.871633 CGGCCTTTTTGTTTCTGCATTT 59.128 40.909 0.00 0.00 0.00 2.32
244 245 2.482864 CGGCCTTTTTGTTTCTGCATT 58.517 42.857 0.00 0.00 0.00 3.56
245 246 1.873486 GCGGCCTTTTTGTTTCTGCAT 60.873 47.619 0.00 0.00 0.00 3.96
246 247 0.529555 GCGGCCTTTTTGTTTCTGCA 60.530 50.000 0.00 0.00 0.00 4.41
247 248 0.249447 AGCGGCCTTTTTGTTTCTGC 60.249 50.000 0.00 0.00 0.00 4.26
248 249 3.049912 GTTAGCGGCCTTTTTGTTTCTG 58.950 45.455 0.00 0.00 0.00 3.02
249 250 2.691011 TGTTAGCGGCCTTTTTGTTTCT 59.309 40.909 0.00 0.00 0.00 2.52
250 251 3.086818 TGTTAGCGGCCTTTTTGTTTC 57.913 42.857 0.00 0.00 0.00 2.78
251 252 3.131400 TCTTGTTAGCGGCCTTTTTGTTT 59.869 39.130 0.00 0.00 0.00 2.83
252 253 2.691011 TCTTGTTAGCGGCCTTTTTGTT 59.309 40.909 0.00 0.00 0.00 2.83
253 254 2.303175 TCTTGTTAGCGGCCTTTTTGT 58.697 42.857 0.00 0.00 0.00 2.83
254 255 3.244976 CATCTTGTTAGCGGCCTTTTTG 58.755 45.455 0.00 0.00 0.00 2.44
255 256 2.231235 CCATCTTGTTAGCGGCCTTTTT 59.769 45.455 0.00 0.00 0.00 1.94
256 257 1.818674 CCATCTTGTTAGCGGCCTTTT 59.181 47.619 0.00 0.00 0.00 2.27
257 258 1.463674 CCATCTTGTTAGCGGCCTTT 58.536 50.000 0.00 0.00 0.00 3.11
258 259 0.394352 CCCATCTTGTTAGCGGCCTT 60.394 55.000 0.00 0.00 0.00 4.35
259 260 1.224592 CCCATCTTGTTAGCGGCCT 59.775 57.895 0.00 0.00 0.00 5.19
260 261 2.481471 GCCCATCTTGTTAGCGGCC 61.481 63.158 0.00 0.00 0.00 6.13
261 262 2.481471 GGCCCATCTTGTTAGCGGC 61.481 63.158 0.00 0.00 0.00 6.53
262 263 2.180204 CGGCCCATCTTGTTAGCGG 61.180 63.158 0.00 0.00 0.00 5.52
263 264 2.823829 GCGGCCCATCTTGTTAGCG 61.824 63.158 0.00 0.00 0.00 4.26
264 265 2.823829 CGCGGCCCATCTTGTTAGC 61.824 63.158 0.00 0.00 0.00 3.09
265 266 2.823829 GCGCGGCCCATCTTGTTAG 61.824 63.158 8.83 0.00 0.00 2.34
266 267 2.822255 GCGCGGCCCATCTTGTTA 60.822 61.111 8.83 0.00 0.00 2.41
270 271 3.399105 TATGTGCGCGGCCCATCTT 62.399 57.895 8.83 0.00 0.00 2.40
271 272 3.814615 CTATGTGCGCGGCCCATCT 62.815 63.158 8.83 0.00 0.00 2.90
272 273 3.349006 CTATGTGCGCGGCCCATC 61.349 66.667 8.83 0.00 0.00 3.51
273 274 3.814615 CTCTATGTGCGCGGCCCAT 62.815 63.158 8.83 5.98 0.00 4.00
274 275 4.529219 CTCTATGTGCGCGGCCCA 62.529 66.667 8.83 0.00 0.00 5.36
275 276 3.733344 TTCTCTATGTGCGCGGCCC 62.733 63.158 8.83 0.00 0.00 5.80
276 277 2.202878 TTCTCTATGTGCGCGGCC 60.203 61.111 8.83 0.00 0.00 6.13
277 278 2.860628 CGTTCTCTATGTGCGCGGC 61.861 63.158 8.83 0.00 0.00 6.53
278 279 1.226575 TCGTTCTCTATGTGCGCGG 60.227 57.895 8.83 0.00 0.00 6.46
279 280 0.796870 TGTCGTTCTCTATGTGCGCG 60.797 55.000 0.00 0.00 0.00 6.86
280 281 1.321743 CTTGTCGTTCTCTATGTGCGC 59.678 52.381 0.00 0.00 0.00 6.09
281 282 1.321743 GCTTGTCGTTCTCTATGTGCG 59.678 52.381 0.00 0.00 0.00 5.34
282 283 1.321743 CGCTTGTCGTTCTCTATGTGC 59.678 52.381 0.00 0.00 0.00 4.57
283 284 2.594654 GTCGCTTGTCGTTCTCTATGTG 59.405 50.000 0.00 0.00 39.67 3.21
284 285 2.228103 TGTCGCTTGTCGTTCTCTATGT 59.772 45.455 0.00 0.00 39.67 2.29
285 286 2.848887 CTGTCGCTTGTCGTTCTCTATG 59.151 50.000 0.00 0.00 39.67 2.23
286 287 2.159366 CCTGTCGCTTGTCGTTCTCTAT 60.159 50.000 0.00 0.00 39.67 1.98
287 288 1.199327 CCTGTCGCTTGTCGTTCTCTA 59.801 52.381 0.00 0.00 39.67 2.43
288 289 0.039074 CCTGTCGCTTGTCGTTCTCT 60.039 55.000 0.00 0.00 39.67 3.10
289 290 0.039437 TCCTGTCGCTTGTCGTTCTC 60.039 55.000 0.00 0.00 39.67 2.87
290 291 0.039074 CTCCTGTCGCTTGTCGTTCT 60.039 55.000 0.00 0.00 39.67 3.01
291 292 1.009389 CCTCCTGTCGCTTGTCGTTC 61.009 60.000 0.00 0.00 39.67 3.95
292 293 1.006102 CCTCCTGTCGCTTGTCGTT 60.006 57.895 0.00 0.00 39.67 3.85
293 294 2.651361 CCTCCTGTCGCTTGTCGT 59.349 61.111 0.00 0.00 39.67 4.34
294 295 2.125912 CCCTCCTGTCGCTTGTCG 60.126 66.667 0.00 0.00 40.15 4.35
295 296 1.827399 TTCCCCTCCTGTCGCTTGTC 61.827 60.000 0.00 0.00 0.00 3.18
296 297 1.841556 TTCCCCTCCTGTCGCTTGT 60.842 57.895 0.00 0.00 0.00 3.16
297 298 1.376037 GTTCCCCTCCTGTCGCTTG 60.376 63.158 0.00 0.00 0.00 4.01
298 299 2.943978 CGTTCCCCTCCTGTCGCTT 61.944 63.158 0.00 0.00 0.00 4.68
299 300 3.382832 CGTTCCCCTCCTGTCGCT 61.383 66.667 0.00 0.00 0.00 4.93
301 302 3.691342 TGCGTTCCCCTCCTGTCG 61.691 66.667 0.00 0.00 0.00 4.35
302 303 2.047179 GTGCGTTCCCCTCCTGTC 60.047 66.667 0.00 0.00 0.00 3.51
303 304 3.637273 GGTGCGTTCCCCTCCTGT 61.637 66.667 0.00 0.00 0.00 4.00
304 305 3.636231 TGGTGCGTTCCCCTCCTG 61.636 66.667 0.00 0.00 0.00 3.86
305 306 3.637273 GTGGTGCGTTCCCCTCCT 61.637 66.667 0.00 0.00 0.00 3.69
306 307 3.485346 TTGTGGTGCGTTCCCCTCC 62.485 63.158 0.00 0.00 0.00 4.30
307 308 2.112297 TTGTGGTGCGTTCCCCTC 59.888 61.111 0.00 0.00 0.00 4.30
308 309 2.203294 GTTGTGGTGCGTTCCCCT 60.203 61.111 0.00 0.00 0.00 4.79
309 310 3.656045 CGTTGTGGTGCGTTCCCC 61.656 66.667 0.00 0.00 0.00 4.81
310 311 2.589442 TCGTTGTGGTGCGTTCCC 60.589 61.111 0.00 0.00 0.00 3.97
311 312 1.707239 TTGTCGTTGTGGTGCGTTCC 61.707 55.000 0.00 0.00 0.00 3.62
312 313 0.097325 TTTGTCGTTGTGGTGCGTTC 59.903 50.000 0.00 0.00 0.00 3.95
313 314 0.522180 TTTTGTCGTTGTGGTGCGTT 59.478 45.000 0.00 0.00 0.00 4.84
314 315 0.179184 GTTTTGTCGTTGTGGTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
315 316 0.179187 TGTTTTGTCGTTGTGGTGCG 60.179 50.000 0.00 0.00 0.00 5.34
316 317 1.917303 CTTGTTTTGTCGTTGTGGTGC 59.083 47.619 0.00 0.00 0.00 5.01
317 318 1.917303 GCTTGTTTTGTCGTTGTGGTG 59.083 47.619 0.00 0.00 0.00 4.17
318 319 1.816224 AGCTTGTTTTGTCGTTGTGGT 59.184 42.857 0.00 0.00 0.00 4.16
319 320 2.559998 AGCTTGTTTTGTCGTTGTGG 57.440 45.000 0.00 0.00 0.00 4.17
320 321 4.518217 CTCTAGCTTGTTTTGTCGTTGTG 58.482 43.478 0.00 0.00 0.00 3.33
321 322 3.002348 GCTCTAGCTTGTTTTGTCGTTGT 59.998 43.478 0.00 0.00 38.21 3.32
322 323 3.545633 GCTCTAGCTTGTTTTGTCGTTG 58.454 45.455 0.00 0.00 38.21 4.10
323 324 2.221055 CGCTCTAGCTTGTTTTGTCGTT 59.779 45.455 0.00 0.00 39.32 3.85
324 325 1.792949 CGCTCTAGCTTGTTTTGTCGT 59.207 47.619 0.00 0.00 39.32 4.34
325 326 2.058798 TCGCTCTAGCTTGTTTTGTCG 58.941 47.619 0.00 0.00 39.32 4.35
326 327 4.390297 AGATTCGCTCTAGCTTGTTTTGTC 59.610 41.667 0.00 0.00 39.32 3.18
327 328 4.319177 AGATTCGCTCTAGCTTGTTTTGT 58.681 39.130 0.00 0.00 39.32 2.83
328 329 4.935885 AGATTCGCTCTAGCTTGTTTTG 57.064 40.909 0.00 0.00 39.32 2.44
329 330 4.997395 TCAAGATTCGCTCTAGCTTGTTTT 59.003 37.500 0.00 0.00 37.71 2.43
330 331 4.569943 TCAAGATTCGCTCTAGCTTGTTT 58.430 39.130 0.00 0.00 37.71 2.83
331 332 4.193826 TCAAGATTCGCTCTAGCTTGTT 57.806 40.909 0.00 0.00 37.71 2.83
332 333 3.876274 TCAAGATTCGCTCTAGCTTGT 57.124 42.857 0.00 0.00 37.71 3.16
333 334 4.208873 GTCATCAAGATTCGCTCTAGCTTG 59.791 45.833 0.00 0.00 39.32 4.01
334 335 4.142071 TGTCATCAAGATTCGCTCTAGCTT 60.142 41.667 0.00 0.00 39.32 3.74
335 336 3.382865 TGTCATCAAGATTCGCTCTAGCT 59.617 43.478 0.00 0.00 39.32 3.32
336 337 3.711086 TGTCATCAAGATTCGCTCTAGC 58.289 45.455 0.00 0.00 32.41 3.42
337 338 4.037327 TCCTGTCATCAAGATTCGCTCTAG 59.963 45.833 0.00 0.00 32.41 2.43
338 339 3.954258 TCCTGTCATCAAGATTCGCTCTA 59.046 43.478 0.00 0.00 32.41 2.43
339 340 2.762887 TCCTGTCATCAAGATTCGCTCT 59.237 45.455 0.00 0.00 34.96 4.09
340 341 2.863137 GTCCTGTCATCAAGATTCGCTC 59.137 50.000 0.00 0.00 0.00 5.03
341 342 2.736719 CGTCCTGTCATCAAGATTCGCT 60.737 50.000 0.00 0.00 0.00 4.93
342 343 1.590238 CGTCCTGTCATCAAGATTCGC 59.410 52.381 0.00 0.00 0.00 4.70
343 344 3.111838 CTCGTCCTGTCATCAAGATTCG 58.888 50.000 0.00 0.00 0.00 3.34
344 345 4.377839 TCTCGTCCTGTCATCAAGATTC 57.622 45.455 0.00 0.00 0.00 2.52
345 346 4.202202 GGATCTCGTCCTGTCATCAAGATT 60.202 45.833 0.00 0.00 44.16 2.40
346 347 3.320541 GGATCTCGTCCTGTCATCAAGAT 59.679 47.826 0.00 0.00 44.16 2.40
347 348 2.690497 GGATCTCGTCCTGTCATCAAGA 59.310 50.000 0.00 0.00 44.16 3.02
348 349 3.090952 GGATCTCGTCCTGTCATCAAG 57.909 52.381 0.00 0.00 44.16 3.02
359 360 1.293924 CACAGCCATTGGATCTCGTC 58.706 55.000 6.95 0.00 0.00 4.20
360 361 0.107508 CCACAGCCATTGGATCTCGT 60.108 55.000 6.95 0.00 36.02 4.18
361 362 0.178767 TCCACAGCCATTGGATCTCG 59.821 55.000 6.95 0.00 38.28 4.04
362 363 1.211457 AGTCCACAGCCATTGGATCTC 59.789 52.381 6.95 0.00 45.05 2.75
363 364 1.293062 AGTCCACAGCCATTGGATCT 58.707 50.000 6.95 0.00 45.05 2.75
364 365 2.843701 CTAGTCCACAGCCATTGGATC 58.156 52.381 6.95 0.00 45.05 3.36
365 366 1.133976 GCTAGTCCACAGCCATTGGAT 60.134 52.381 6.95 0.00 45.05 3.41
366 367 0.253044 GCTAGTCCACAGCCATTGGA 59.747 55.000 6.95 0.00 41.06 3.53
367 368 2.785868 GCTAGTCCACAGCCATTGG 58.214 57.895 0.00 0.00 32.68 3.16
374 375 3.701604 GACGCCGGCTAGTCCACAG 62.702 68.421 26.68 7.84 34.01 3.66
375 376 3.755628 GACGCCGGCTAGTCCACA 61.756 66.667 26.68 0.00 34.01 4.17
396 397 3.752167 GAGGACGGGGAGGGGAGA 61.752 72.222 0.00 0.00 0.00 3.71
401 402 1.335882 GGTAAAGGAGGACGGGGAGG 61.336 65.000 0.00 0.00 0.00 4.30
403 404 0.117742 AAGGTAAAGGAGGACGGGGA 59.882 55.000 0.00 0.00 0.00 4.81
404 405 0.252197 CAAGGTAAAGGAGGACGGGG 59.748 60.000 0.00 0.00 0.00 5.73
406 407 0.392595 GGCAAGGTAAAGGAGGACGG 60.393 60.000 0.00 0.00 0.00 4.79
408 409 0.611714 TCGGCAAGGTAAAGGAGGAC 59.388 55.000 0.00 0.00 0.00 3.85
417 418 1.373748 GCGTTGAGTCGGCAAGGTA 60.374 57.895 0.00 0.00 36.37 3.08
418 419 2.665185 GCGTTGAGTCGGCAAGGT 60.665 61.111 0.00 0.00 36.37 3.50
449 450 1.222113 GGCTGGGTGTAAGAGGAGC 59.778 63.158 0.00 0.00 0.00 4.70
456 457 1.765074 GGACTTGGGCTGGGTGTAA 59.235 57.895 0.00 0.00 0.00 2.41
458 459 3.953775 CGGACTTGGGCTGGGTGT 61.954 66.667 0.00 0.00 0.00 4.16
938 1030 1.852157 TTCACAGCCTCATCCACCCC 61.852 60.000 0.00 0.00 0.00 4.95
939 1031 0.678048 GTTCACAGCCTCATCCACCC 60.678 60.000 0.00 0.00 0.00 4.61
941 1033 0.320771 ACGTTCACAGCCTCATCCAC 60.321 55.000 0.00 0.00 0.00 4.02
942 1034 0.320683 CACGTTCACAGCCTCATCCA 60.321 55.000 0.00 0.00 0.00 3.41
943 1035 1.639298 GCACGTTCACAGCCTCATCC 61.639 60.000 0.00 0.00 0.00 3.51
944 1036 0.671781 AGCACGTTCACAGCCTCATC 60.672 55.000 0.00 0.00 0.00 2.92
946 1038 1.595109 CAGCACGTTCACAGCCTCA 60.595 57.895 0.00 0.00 0.00 3.86
948 1040 2.947938 AAGCAGCACGTTCACAGCCT 62.948 55.000 0.00 0.00 0.00 4.58
952 1044 4.530581 TGAAGCAGCACGTTCACA 57.469 50.000 0.00 0.00 0.00 3.58
954 1046 1.159713 CCTGTGAAGCAGCACGTTCA 61.160 55.000 0.00 0.00 43.71 3.18
955 1047 0.880278 TCCTGTGAAGCAGCACGTTC 60.880 55.000 0.00 0.00 43.71 3.95
957 1049 0.952497 CATCCTGTGAAGCAGCACGT 60.952 55.000 0.00 0.00 43.71 4.49
959 1051 1.085091 CTCATCCTGTGAAGCAGCAC 58.915 55.000 0.00 2.36 43.71 4.40
960 1052 0.035725 CCTCATCCTGTGAAGCAGCA 60.036 55.000 0.00 0.00 43.71 4.41
961 1053 1.375098 GCCTCATCCTGTGAAGCAGC 61.375 60.000 0.00 0.00 42.63 5.25
962 1054 0.252479 AGCCTCATCCTGTGAAGCAG 59.748 55.000 1.99 0.00 44.98 4.24
963 1055 0.035725 CAGCCTCATCCTGTGAAGCA 60.036 55.000 1.99 0.00 44.98 3.91
964 1056 0.035630 ACAGCCTCATCCTGTGAAGC 60.036 55.000 0.00 0.00 43.28 3.86
969 1061 0.036952 CGTTCACAGCCTCATCCTGT 60.037 55.000 0.00 0.00 43.92 4.00
971 1063 0.036952 CACGTTCACAGCCTCATCCT 60.037 55.000 0.00 0.00 0.00 3.24
1108 4442 1.341209 GGCACCTTCTTTTTCCACCAG 59.659 52.381 0.00 0.00 0.00 4.00
1112 4446 1.039856 GCAGGCACCTTCTTTTTCCA 58.960 50.000 0.00 0.00 0.00 3.53
1121 4455 0.990374 ATTGAGAGAGCAGGCACCTT 59.010 50.000 0.00 0.00 0.00 3.50
1143 4477 3.244353 GGATGACTGTGCTATATGCCACT 60.244 47.826 8.45 0.00 42.00 4.00
1170 4504 4.208746 TGGTTTCGCCTTCCTTAAAGAAA 58.791 39.130 0.00 0.00 37.12 2.52
1487 4823 1.897133 TGCTTCTTCCATGCTTGCAAT 59.103 42.857 0.00 0.00 0.00 3.56
1699 5041 5.351948 TCATCCATCATTCCACGTTTAGA 57.648 39.130 0.00 0.00 0.00 2.10
1723 5065 8.279970 TGCATTTTACTTGTTATCAGCATAGT 57.720 30.769 0.00 0.00 0.00 2.12
1735 5077 2.621055 TGCGTTCCTGCATTTTACTTGT 59.379 40.909 0.00 0.00 40.62 3.16
2098 5444 7.517417 GCAGTATCCGTCAATCAGTGAATTAAG 60.517 40.741 0.00 0.00 38.23 1.85
2271 5617 4.508861 GGTTTAATTCTCTTACGCGCCATA 59.491 41.667 5.73 0.00 0.00 2.74
2275 5621 3.615496 TCAGGTTTAATTCTCTTACGCGC 59.385 43.478 5.73 0.00 0.00 6.86
2304 5650 6.317088 CCATCCATTATGACGCAATATGAAC 58.683 40.000 0.00 0.00 37.86 3.18
2576 5923 6.098695 TGTTAGAGTACGTAATGGGCCTAATT 59.901 38.462 4.53 6.05 0.00 1.40
2668 6016 2.613133 GGTGTTAGGTTTGTGTTGCGTA 59.387 45.455 0.00 0.00 0.00 4.42
2744 6092 3.119137 GGTCCAAAATAATGTGTCCCAGC 60.119 47.826 0.00 0.00 0.00 4.85
2752 6106 7.619512 TTTGTTAAGGGGTCCAAAATAATGT 57.380 32.000 0.00 0.00 0.00 2.71
2754 6108 8.719596 ACTTTTTGTTAAGGGGTCCAAAATAAT 58.280 29.630 0.00 0.00 36.85 1.28
2798 6153 3.891586 CTGTACGCGTGCACGTCCT 62.892 63.158 36.80 22.48 44.43 3.85
2810 6165 2.422597 TGAAATCCAAGTGGCTGTACG 58.577 47.619 0.00 0.00 34.44 3.67
2827 6182 0.400213 GTCCAGGTGGTGTCCATGAA 59.600 55.000 0.00 0.00 35.28 2.57
2828 6183 0.766288 TGTCCAGGTGGTGTCCATGA 60.766 55.000 0.00 0.00 35.28 3.07
3022 6378 0.890683 CATTCTCCAACACAAGCCCC 59.109 55.000 0.00 0.00 0.00 5.80
3032 6388 1.195115 CCCTCCTCGTCATTCTCCAA 58.805 55.000 0.00 0.00 0.00 3.53
3069 6435 2.047274 CTGTGACATCGGGCGGTT 60.047 61.111 0.00 0.00 0.00 4.44
3071 6437 2.507110 AAGTCTGTGACATCGGGCGG 62.507 60.000 0.46 0.00 34.60 6.13
3073 6439 0.798776 CAAAGTCTGTGACATCGGGC 59.201 55.000 0.46 0.00 34.60 6.13
3074 6440 2.341257 CTCAAAGTCTGTGACATCGGG 58.659 52.381 0.46 0.00 34.60 5.14
3213 6589 2.187946 GGGAGATGCGTGGTCTGG 59.812 66.667 0.00 0.00 0.00 3.86
3267 6643 4.827087 CGGCGATGAGGCTGCAGT 62.827 66.667 16.64 0.00 44.22 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.