Multiple sequence alignment - TraesCS1B01G071800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G071800 chr1B 100.000 6814 0 0 1 6814 56882314 56889127 0.000000e+00 12584
1 TraesCS1B01G071800 chr1A 94.947 3424 143 20 3410 6813 36274039 36277452 0.000000e+00 5337
2 TraesCS1B01G071800 chr1A 92.719 2802 135 33 12 2793 36270364 36273116 0.000000e+00 3980
3 TraesCS1B01G071800 chr1A 88.390 267 25 6 5982 6245 68157039 68157302 3.970000e-82 316
4 TraesCS1B01G071800 chr1A 85.127 316 33 11 2791 3102 36273417 36273112 1.850000e-80 311
5 TraesCS1B01G071800 chr1D 92.245 2824 151 37 11 2793 36834885 36837681 0.000000e+00 3940
6 TraesCS1B01G071800 chr1D 96.353 1426 46 5 4809 6230 36839717 36841140 0.000000e+00 2340
7 TraesCS1B01G071800 chr1D 93.855 1074 49 4 3738 4803 36838566 36839630 0.000000e+00 1602
8 TraesCS1B01G071800 chr1D 95.925 589 23 1 6226 6813 36841374 36841962 0.000000e+00 953
9 TraesCS1B01G071800 chr1D 88.545 323 21 7 2791 3102 36837994 36837677 1.790000e-100 377
10 TraesCS1B01G071800 chr1D 94.850 233 12 0 3410 3642 36838331 36838563 1.400000e-96 364
11 TraesCS1B01G071800 chr1D 88.210 229 22 4 5983 6210 334816411 334816635 1.130000e-67 268
12 TraesCS1B01G071800 chr1D 89.252 214 19 4 5998 6209 303702761 303702550 1.460000e-66 265
13 TraesCS1B01G071800 chr4B 89.963 269 24 3 5979 6245 258762327 258762594 1.820000e-90 344
14 TraesCS1B01G071800 chr6A 88.406 276 25 7 5973 6245 569480564 569480293 6.590000e-85 326
15 TraesCS1B01G071800 chr3D 89.394 264 21 7 5986 6245 467323885 467323625 6.590000e-85 326
16 TraesCS1B01G071800 chr7A 86.689 293 32 7 5983 6271 350641437 350641726 1.100000e-82 318
17 TraesCS1B01G071800 chr3A 87.681 276 28 6 5974 6245 175624699 175624426 3.970000e-82 316
18 TraesCS1B01G071800 chr7D 87.365 277 29 6 5973 6245 227781516 227781790 5.130000e-81 313
19 TraesCS1B01G071800 chr4A 86.853 251 28 5 5986 6233 333762977 333762729 6.730000e-70 276
20 TraesCS1B01G071800 chr5A 86.885 244 26 5 5973 6213 371479518 371479278 1.130000e-67 268
21 TraesCS1B01G071800 chr3B 86.937 222 25 4 5986 6205 50047551 50047770 5.280000e-61 246
22 TraesCS1B01G071800 chr5D 86.283 226 29 2 5986 6210 477725248 477725024 1.900000e-60 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G071800 chr1B 56882314 56889127 6813 False 12584.0 12584 100.0000 1 6814 1 chr1B.!!$F1 6813
1 TraesCS1B01G071800 chr1A 36270364 36277452 7088 False 4658.5 5337 93.8330 12 6813 2 chr1A.!!$F2 6801
2 TraesCS1B01G071800 chr1D 36834885 36841962 7077 False 1839.8 3940 94.6456 11 6813 5 chr1D.!!$F2 6802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 536 0.037590 CTGACCAACCCCGGAATTCA 59.962 55.000 0.73 0.00 0.00 2.57 F
1536 1574 0.178921 TGGAGAGGAAGAGCACCACT 60.179 55.000 0.00 0.00 0.00 4.00 F
1745 1783 0.108662 TGTAGGTCATCGCTGCAGTG 60.109 55.000 21.43 21.43 0.00 3.66 F
2916 2962 0.099436 GCTGATTCACGGTTGGATGC 59.901 55.000 0.00 0.00 0.00 3.91 F
2994 3040 0.038744 GGGTGCAGATATCCCCCATG 59.961 60.000 10.85 0.00 35.32 3.66 F
3064 3110 0.178068 CTTAGGAGGCGGCAGCTTTA 59.822 55.000 13.08 0.00 44.37 1.85 F
3065 3111 0.178068 TTAGGAGGCGGCAGCTTTAG 59.822 55.000 13.08 0.00 44.37 1.85 F
3644 4097 0.321671 TCAGCCTCTTCCACTTTCCG 59.678 55.000 0.00 0.00 0.00 4.30 F
4022 4475 1.207593 CTAACGCCAGCAGCAACAC 59.792 57.895 0.00 0.00 44.04 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1766 0.608130 AACACTGCAGCGATGACCTA 59.392 50.000 15.27 0.00 0.00 3.08 R
2858 2904 0.038166 TGGGTCCTCCATTGCAGTTC 59.962 55.000 0.00 0.00 41.46 3.01 R
2975 3021 0.038744 CATGGGGGATATCTGCACCC 59.961 60.000 14.44 14.44 34.79 4.61 R
3727 4180 0.238289 CACCCATGCAAACGAGTGAC 59.762 55.000 0.00 0.00 0.00 3.67 R
3988 4441 1.068610 GTTAGCTTTCCGTGCATGCAA 60.069 47.619 24.58 3.69 0.00 4.08 R
4110 4564 1.453928 GAGTAATGGGGTGGCCTGC 60.454 63.158 3.32 0.00 0.00 4.85 R
4694 5156 2.061773 AGAAGACAAACGTGAGCATCG 58.938 47.619 0.00 0.00 38.61 3.84 R
5328 5875 1.925255 ACACCCTTGACCATCCATGAT 59.075 47.619 0.00 0.00 0.00 2.45 R
5982 6529 2.102109 TTGAACCGCAGAAGCCCGTA 62.102 55.000 0.00 0.00 37.52 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.897657 AGGGACTATTCGGATACCTCA 57.102 47.619 0.00 0.00 36.02 3.86
30 31 4.194678 AGGGACTATTCGGATACCTCAA 57.805 45.455 0.00 0.00 36.02 3.02
83 84 0.391263 CCGGCTTCTTAAACCTCGCT 60.391 55.000 0.00 0.00 0.00 4.93
148 149 4.778143 GCCGCCACCACCACCTAG 62.778 72.222 0.00 0.00 0.00 3.02
203 204 1.298563 CACACAGCGGCAACACTTG 60.299 57.895 1.45 0.00 0.00 3.16
295 296 0.245539 ATAACACACGTCCTGGACCG 59.754 55.000 20.68 17.06 0.00 4.79
491 516 2.688477 GATCTCCTTCTCCCATCTGGT 58.312 52.381 0.00 0.00 34.77 4.00
508 533 1.683441 GTCTGACCAACCCCGGAAT 59.317 57.895 0.73 0.00 0.00 3.01
511 536 0.037590 CTGACCAACCCCGGAATTCA 59.962 55.000 0.73 0.00 0.00 2.57
522 547 2.423538 CCCGGAATTCACATCAGGAAAC 59.576 50.000 0.73 0.00 34.50 2.78
596 621 1.518903 GGCTCCAGCGGCAATAATCC 61.519 60.000 1.45 0.00 43.26 3.01
629 654 1.007271 CGGATCGTGGAGGAATCCG 60.007 63.158 8.44 8.44 46.38 4.18
709 734 1.079750 GAGGAACCCTCGAGCACAC 60.080 63.158 6.99 0.00 41.08 3.82
710 735 1.534235 AGGAACCCTCGAGCACACT 60.534 57.895 6.99 0.00 0.00 3.55
712 737 0.606604 GGAACCCTCGAGCACACTAA 59.393 55.000 6.99 0.00 0.00 2.24
736 766 3.312890 GAATGAGGAGGAGGATGGAGAA 58.687 50.000 0.00 0.00 0.00 2.87
737 767 2.468301 TGAGGAGGAGGATGGAGAAG 57.532 55.000 0.00 0.00 0.00 2.85
807 838 2.677979 GGCTCACTTTCGGGTTCGC 61.678 63.158 0.00 0.00 36.13 4.70
809 840 1.663702 CTCACTTTCGGGTTCGCGT 60.664 57.895 5.77 0.00 36.13 6.01
832 863 1.815421 CTTCGGGCCGTGGATCTTG 60.815 63.158 27.32 4.51 0.00 3.02
833 864 3.323758 TTCGGGCCGTGGATCTTGG 62.324 63.158 27.32 0.00 0.00 3.61
834 865 4.096003 CGGGCCGTGGATCTTGGT 62.096 66.667 19.97 0.00 0.00 3.67
851 882 1.541310 GGTTGGGCTTTTAGTGGGCC 61.541 60.000 0.00 0.00 46.56 5.80
853 884 2.754254 GGGCTTTTAGTGGGCCGG 60.754 66.667 0.00 0.00 46.10 6.13
877 908 4.357947 GTCGGGCAGCGACTCACA 62.358 66.667 8.72 0.00 33.98 3.58
878 909 4.357947 TCGGGCAGCGACTCACAC 62.358 66.667 0.00 0.00 0.00 3.82
880 911 2.740055 GGGCAGCGACTCACACAG 60.740 66.667 0.00 0.00 0.00 3.66
881 912 2.029666 GGCAGCGACTCACACAGT 59.970 61.111 0.00 0.00 38.45 3.55
1158 1191 4.468689 GACGGCGGGAAGAAGGGG 62.469 72.222 13.24 0.00 0.00 4.79
1169 1202 0.995803 AAGAAGGGGAGGAAGAAGCC 59.004 55.000 0.00 0.00 0.00 4.35
1302 1335 4.802999 CTTGGTTGGAATCTTTGAAGCTC 58.197 43.478 0.00 0.00 0.00 4.09
1303 1336 3.157087 TGGTTGGAATCTTTGAAGCTCC 58.843 45.455 0.00 5.31 0.00 4.70
1304 1337 3.157087 GGTTGGAATCTTTGAAGCTCCA 58.843 45.455 9.16 9.16 36.54 3.86
1305 1338 3.766051 GGTTGGAATCTTTGAAGCTCCAT 59.234 43.478 12.35 0.00 37.49 3.41
1306 1339 4.381292 GGTTGGAATCTTTGAAGCTCCATG 60.381 45.833 12.35 0.00 37.49 3.66
1307 1340 4.305539 TGGAATCTTTGAAGCTCCATGA 57.694 40.909 0.00 0.00 34.69 3.07
1323 1356 5.709164 GCTCCATGACCATGAGCTTAATTAT 59.291 40.000 18.39 0.00 41.20 1.28
1412 1450 4.081406 CTGAACATGAATCCCAGGTCAAA 58.919 43.478 0.00 0.00 39.08 2.69
1432 1470 6.636850 GTCAAATTTGATTGTACAGTGACCAC 59.363 38.462 23.05 2.36 39.73 4.16
1433 1471 6.545666 TCAAATTTGATTGTACAGTGACCACT 59.454 34.615 16.91 0.00 35.52 4.00
1472 1510 3.498927 AGCACTGCTCATATTTGTTGC 57.501 42.857 0.00 0.00 30.62 4.17
1523 1561 4.958509 ACATATGTTGCAGAGATGGAGAG 58.041 43.478 1.41 0.00 0.00 3.20
1530 1568 1.069049 GCAGAGATGGAGAGGAAGAGC 59.931 57.143 0.00 0.00 0.00 4.09
1531 1569 2.386779 CAGAGATGGAGAGGAAGAGCA 58.613 52.381 0.00 0.00 0.00 4.26
1536 1574 0.178921 TGGAGAGGAAGAGCACCACT 60.179 55.000 0.00 0.00 0.00 4.00
1701 1739 3.781079 TTTTCACTGTTTGTGCTGAGG 57.219 42.857 0.00 0.00 45.81 3.86
1728 1766 5.296780 TGAGCTCGAAAATTTCTCTTGTTGT 59.703 36.000 9.64 0.00 0.00 3.32
1745 1783 0.108662 TGTAGGTCATCGCTGCAGTG 60.109 55.000 21.43 21.43 0.00 3.66
1980 2018 5.190992 TGCTTTAATGAATGCATGGCTAG 57.809 39.130 0.00 0.00 39.92 3.42
1998 2036 3.062234 GCTAGTGTTTCAGACATAACCGC 59.938 47.826 0.00 0.00 41.10 5.68
2056 2094 8.215736 AGGGTTAGTAAAAGTAACAATCAGTGT 58.784 33.333 6.90 0.00 44.64 3.55
2260 2303 7.785033 ACAATCTCTTTGTTTTCATTCTGGTT 58.215 30.769 0.00 0.00 46.51 3.67
2362 2405 5.824624 TGTGATTTTCTGCTCACTCTTTCTT 59.175 36.000 3.56 0.00 41.83 2.52
2479 2523 2.091333 AGGTTGGTTGTCTCCCATGTTT 60.091 45.455 0.00 0.00 0.00 2.83
2553 2597 3.558418 TGTAGAGTTTTGAAGCGGTGAAC 59.442 43.478 0.00 0.00 0.00 3.18
2610 2655 2.180432 AGGTAAAACTGTTCTCCCGC 57.820 50.000 0.00 0.00 0.00 6.13
2714 2760 6.808008 TTCCTTTATGAGAAGTTCTTGCTG 57.192 37.500 6.88 0.00 0.00 4.41
2761 2807 2.084546 GAAAAGGATCGGGTTCCACTG 58.915 52.381 3.38 0.00 38.32 3.66
2777 2823 5.925506 TCCACTGTCATAAGATAACGGAA 57.074 39.130 0.00 0.00 0.00 4.30
2789 2835 8.993121 CATAAGATAACGGAACAGAAAGCATAT 58.007 33.333 0.00 0.00 0.00 1.78
2793 2839 8.827677 AGATAACGGAACAGAAAGCATATAAAC 58.172 33.333 0.00 0.00 0.00 2.01
2795 2841 7.448748 AACGGAACAGAAAGCATATAAACTT 57.551 32.000 0.00 0.00 0.00 2.66
2796 2842 7.073342 ACGGAACAGAAAGCATATAAACTTC 57.927 36.000 0.00 0.00 0.00 3.01
2797 2843 6.653320 ACGGAACAGAAAGCATATAAACTTCA 59.347 34.615 0.00 0.00 0.00 3.02
2799 2845 7.148407 CGGAACAGAAAGCATATAAACTTCACT 60.148 37.037 0.00 0.00 0.00 3.41
2800 2846 7.965107 GGAACAGAAAGCATATAAACTTCACTG 59.035 37.037 15.44 15.44 36.83 3.66
2803 2849 6.599244 CAGAAAGCATATAAACTTCACTGGGA 59.401 38.462 12.31 0.00 32.06 4.37
2804 2850 7.121168 CAGAAAGCATATAAACTTCACTGGGAA 59.879 37.037 0.00 0.00 32.06 3.97
2805 2851 7.836183 AGAAAGCATATAAACTTCACTGGGAAT 59.164 33.333 0.00 0.00 34.32 3.01
2814 2860 6.901081 AACTTCACTGGGAATAAAAGGAAG 57.099 37.500 0.00 0.00 37.21 3.46
2815 2861 5.953571 ACTTCACTGGGAATAAAAGGAAGT 58.046 37.500 0.00 0.00 38.96 3.01
2817 2863 7.523415 ACTTCACTGGGAATAAAAGGAAGTAA 58.477 34.615 0.00 0.00 41.15 2.24
2818 2864 8.002459 ACTTCACTGGGAATAAAAGGAAGTAAA 58.998 33.333 0.00 0.00 41.15 2.01
2819 2865 8.950007 TTCACTGGGAATAAAAGGAAGTAAAT 57.050 30.769 0.00 0.00 0.00 1.40
2820 2866 8.575649 TCACTGGGAATAAAAGGAAGTAAATC 57.424 34.615 0.00 0.00 0.00 2.17
2821 2867 7.614192 TCACTGGGAATAAAAGGAAGTAAATCC 59.386 37.037 0.00 0.00 39.96 3.01
2875 2921 1.815003 CAAGAACTGCAATGGAGGACC 59.185 52.381 6.73 0.00 0.00 4.46
2886 2932 2.656947 TGGAGGACCCAAAAACTGAG 57.343 50.000 0.00 0.00 43.29 3.35
2891 2937 1.704641 GACCCAAAAACTGAGGGCTT 58.295 50.000 0.00 0.00 46.88 4.35
2892 2938 2.039418 GACCCAAAAACTGAGGGCTTT 58.961 47.619 0.00 0.00 46.88 3.51
2893 2939 1.762370 ACCCAAAAACTGAGGGCTTTG 59.238 47.619 0.00 0.00 46.88 2.77
2907 2953 1.135575 GGCTTTGAAGGCTGATTCACG 60.136 52.381 9.76 0.00 46.98 4.35
2909 2955 2.154462 CTTTGAAGGCTGATTCACGGT 58.846 47.619 0.00 0.00 38.87 4.83
2911 2957 1.522668 TGAAGGCTGATTCACGGTTG 58.477 50.000 0.00 0.00 34.31 3.77
2912 2958 0.804989 GAAGGCTGATTCACGGTTGG 59.195 55.000 0.00 0.00 0.00 3.77
2914 2960 0.620556 AGGCTGATTCACGGTTGGAT 59.379 50.000 0.00 0.00 0.00 3.41
2916 2962 0.099436 GCTGATTCACGGTTGGATGC 59.901 55.000 0.00 0.00 0.00 3.91
2917 2963 1.742761 CTGATTCACGGTTGGATGCT 58.257 50.000 0.00 0.00 0.00 3.79
2918 2964 1.399440 CTGATTCACGGTTGGATGCTG 59.601 52.381 0.00 0.00 0.00 4.41
2919 2965 1.003003 TGATTCACGGTTGGATGCTGA 59.997 47.619 0.00 0.00 0.00 4.26
2920 2966 2.292267 GATTCACGGTTGGATGCTGAT 58.708 47.619 0.00 0.00 0.00 2.90
2921 2967 1.452110 TTCACGGTTGGATGCTGATG 58.548 50.000 0.00 0.00 0.00 3.07
2922 2968 0.392863 TCACGGTTGGATGCTGATGG 60.393 55.000 0.00 0.00 0.00 3.51
2923 2969 0.677731 CACGGTTGGATGCTGATGGT 60.678 55.000 0.00 0.00 0.00 3.55
2924 2970 0.392998 ACGGTTGGATGCTGATGGTC 60.393 55.000 0.00 0.00 0.00 4.02
2926 2972 1.138859 CGGTTGGATGCTGATGGTCTA 59.861 52.381 0.00 0.00 0.00 2.59
2927 2973 2.419990 CGGTTGGATGCTGATGGTCTAA 60.420 50.000 0.00 0.00 0.00 2.10
2928 2974 3.620488 GGTTGGATGCTGATGGTCTAAA 58.380 45.455 0.00 0.00 0.00 1.85
2952 2998 8.504812 AAAAACTGTTTGATGCTGGTTATTTT 57.495 26.923 6.53 0.00 0.00 1.82
2953 2999 7.481275 AAACTGTTTGATGCTGGTTATTTTG 57.519 32.000 4.73 0.00 0.00 2.44
2954 3000 5.540911 ACTGTTTGATGCTGGTTATTTTGG 58.459 37.500 0.00 0.00 0.00 3.28
2955 3001 4.314121 TGTTTGATGCTGGTTATTTTGGC 58.686 39.130 0.00 0.00 0.00 4.52
2956 3002 4.040217 TGTTTGATGCTGGTTATTTTGGCT 59.960 37.500 0.00 0.00 0.00 4.75
2957 3003 3.872511 TGATGCTGGTTATTTTGGCTG 57.127 42.857 0.00 0.00 0.00 4.85
2959 3005 3.831333 TGATGCTGGTTATTTTGGCTGAA 59.169 39.130 0.00 0.00 0.00 3.02
2960 3006 4.282957 TGATGCTGGTTATTTTGGCTGAAA 59.717 37.500 0.00 0.00 0.00 2.69
2961 3007 4.888326 TGCTGGTTATTTTGGCTGAAAT 57.112 36.364 5.12 5.12 33.95 2.17
2962 3008 5.991933 TGCTGGTTATTTTGGCTGAAATA 57.008 34.783 3.55 3.55 31.96 1.40
2963 3009 6.543430 TGCTGGTTATTTTGGCTGAAATAT 57.457 33.333 7.22 0.00 33.01 1.28
2964 3010 6.339730 TGCTGGTTATTTTGGCTGAAATATG 58.660 36.000 7.22 2.48 33.01 1.78
2965 3011 6.154192 TGCTGGTTATTTTGGCTGAAATATGA 59.846 34.615 7.22 0.00 33.01 2.15
2966 3012 6.698766 GCTGGTTATTTTGGCTGAAATATGAG 59.301 38.462 7.22 5.77 33.01 2.90
2967 3013 6.572519 TGGTTATTTTGGCTGAAATATGAGC 58.427 36.000 7.22 0.00 33.01 4.26
2968 3014 6.380846 TGGTTATTTTGGCTGAAATATGAGCT 59.619 34.615 0.00 0.00 33.01 4.09
2969 3015 6.698766 GGTTATTTTGGCTGAAATATGAGCTG 59.301 38.462 0.00 0.00 33.01 4.24
2971 3017 2.353357 TGGCTGAAATATGAGCTGGG 57.647 50.000 0.00 0.00 35.42 4.45
2972 3018 0.957362 GGCTGAAATATGAGCTGGGC 59.043 55.000 0.00 0.00 35.42 5.36
2973 3019 1.478288 GGCTGAAATATGAGCTGGGCT 60.478 52.381 0.00 0.00 43.88 5.19
2974 3020 1.607628 GCTGAAATATGAGCTGGGCTG 59.392 52.381 0.00 0.00 39.88 4.85
2975 3021 2.228059 CTGAAATATGAGCTGGGCTGG 58.772 52.381 0.00 0.00 39.88 4.85
2976 3022 1.133699 TGAAATATGAGCTGGGCTGGG 60.134 52.381 0.00 0.00 39.88 4.45
2977 3023 0.186873 AAATATGAGCTGGGCTGGGG 59.813 55.000 0.00 0.00 39.88 4.96
2978 3024 0.995675 AATATGAGCTGGGCTGGGGT 60.996 55.000 0.00 0.00 39.88 4.95
2979 3025 1.713005 ATATGAGCTGGGCTGGGGTG 61.713 60.000 0.00 0.00 39.88 4.61
2984 3030 3.736224 CTGGGCTGGGGTGCAGAT 61.736 66.667 0.00 0.00 34.04 2.90
2985 3031 2.286045 TGGGCTGGGGTGCAGATA 60.286 61.111 0.00 0.00 34.04 1.98
2986 3032 1.697394 TGGGCTGGGGTGCAGATAT 60.697 57.895 0.00 0.00 34.04 1.63
2987 3033 1.073897 GGGCTGGGGTGCAGATATC 59.926 63.158 0.00 0.00 34.04 1.63
2988 3034 1.073897 GGCTGGGGTGCAGATATCC 59.926 63.158 0.00 0.00 34.04 2.59
2989 3035 1.073897 GCTGGGGTGCAGATATCCC 59.926 63.158 0.54 0.54 40.41 3.85
2992 3038 4.002006 GGGTGCAGATATCCCCCA 57.998 61.111 10.85 0.00 35.32 4.96
2993 3039 2.479562 GGGTGCAGATATCCCCCAT 58.520 57.895 10.85 0.00 35.32 4.00
2994 3040 0.038744 GGGTGCAGATATCCCCCATG 59.961 60.000 10.85 0.00 35.32 3.66
2995 3041 0.773644 GGTGCAGATATCCCCCATGT 59.226 55.000 0.00 0.00 0.00 3.21
2996 3042 1.985159 GGTGCAGATATCCCCCATGTA 59.015 52.381 0.00 0.00 0.00 2.29
2997 3043 2.375174 GGTGCAGATATCCCCCATGTAA 59.625 50.000 0.00 0.00 0.00 2.41
2998 3044 3.010584 GGTGCAGATATCCCCCATGTAAT 59.989 47.826 0.00 0.00 0.00 1.89
3000 3046 5.103940 GGTGCAGATATCCCCCATGTAATAT 60.104 44.000 0.00 0.00 0.00 1.28
3001 3047 5.824624 GTGCAGATATCCCCCATGTAATATG 59.175 44.000 0.00 0.00 0.00 1.78
3005 3051 8.220559 GCAGATATCCCCCATGTAATATGTAAT 58.779 37.037 0.00 0.00 0.00 1.89
3012 3058 9.581289 TCCCCCATGTAATATGTAATAAGTTTG 57.419 33.333 0.00 0.00 29.06 2.93
3013 3059 8.303876 CCCCCATGTAATATGTAATAAGTTTGC 58.696 37.037 0.00 0.00 29.06 3.68
3014 3060 8.020819 CCCCATGTAATATGTAATAAGTTTGCG 58.979 37.037 0.00 0.00 29.06 4.85
3015 3061 8.564574 CCCATGTAATATGTAATAAGTTTGCGT 58.435 33.333 0.00 0.00 29.06 5.24
3016 3062 9.944663 CCATGTAATATGTAATAAGTTTGCGTT 57.055 29.630 0.00 0.00 29.06 4.84
3018 3064 9.858247 ATGTAATATGTAATAAGTTTGCGTTCG 57.142 29.630 0.00 0.00 29.06 3.95
3019 3065 8.871862 TGTAATATGTAATAAGTTTGCGTTCGT 58.128 29.630 0.00 0.00 29.06 3.85
3020 3066 9.693157 GTAATATGTAATAAGTTTGCGTTCGTT 57.307 29.630 0.00 0.00 29.06 3.85
3025 3071 8.832487 TGTAATAAGTTTGCGTTCGTTTAAAA 57.168 26.923 0.00 0.00 0.00 1.52
3026 3072 8.732227 TGTAATAAGTTTGCGTTCGTTTAAAAC 58.268 29.630 0.00 0.00 0.00 2.43
3027 3073 7.974243 AATAAGTTTGCGTTCGTTTAAAACT 57.026 28.000 0.00 0.00 41.54 2.66
3028 3074 7.974243 ATAAGTTTGCGTTCGTTTAAAACTT 57.026 28.000 20.73 20.73 46.90 2.66
3030 3076 7.427238 AAGTTTGCGTTCGTTTAAAACTTAG 57.573 32.000 18.21 0.00 44.81 2.18
3034 3080 6.528014 TGCGTTCGTTTAAAACTTAGATCA 57.472 33.333 0.00 0.00 0.00 2.92
3037 3083 6.617953 GCGTTCGTTTAAAACTTAGATCAGCT 60.618 38.462 0.00 0.00 0.00 4.24
3038 3084 6.732392 CGTTCGTTTAAAACTTAGATCAGCTG 59.268 38.462 7.63 7.63 0.00 4.24
3039 3085 7.358931 CGTTCGTTTAAAACTTAGATCAGCTGA 60.359 37.037 20.79 20.79 0.00 4.26
3040 3086 8.443937 GTTCGTTTAAAACTTAGATCAGCTGAT 58.556 33.333 29.09 29.09 37.51 2.90
3041 3087 8.547967 TCGTTTAAAACTTAGATCAGCTGATT 57.452 30.769 29.26 20.17 34.37 2.57
3043 3089 9.907576 CGTTTAAAACTTAGATCAGCTGATTAG 57.092 33.333 29.26 25.20 34.37 1.73
3061 3107 3.474570 CCTTAGGAGGCGGCAGCT 61.475 66.667 13.08 0.00 44.37 4.24
3062 3108 2.586792 CTTAGGAGGCGGCAGCTT 59.413 61.111 13.08 0.00 44.37 3.74
3063 3109 1.078143 CTTAGGAGGCGGCAGCTTT 60.078 57.895 13.08 0.00 44.37 3.51
3064 3110 0.178068 CTTAGGAGGCGGCAGCTTTA 59.822 55.000 13.08 0.00 44.37 1.85
3065 3111 0.178068 TTAGGAGGCGGCAGCTTTAG 59.822 55.000 13.08 0.00 44.37 1.85
3066 3112 2.311688 TAGGAGGCGGCAGCTTTAGC 62.312 60.000 13.08 0.00 44.37 3.09
3081 3127 3.685272 GCTTTAGCTCGCTCTTTTACCTT 59.315 43.478 0.00 0.00 38.21 3.50
3082 3128 4.154375 GCTTTAGCTCGCTCTTTTACCTTT 59.846 41.667 0.00 0.00 38.21 3.11
3083 3129 5.334957 GCTTTAGCTCGCTCTTTTACCTTTT 60.335 40.000 0.00 0.00 38.21 2.27
3084 3130 5.607119 TTAGCTCGCTCTTTTACCTTTTG 57.393 39.130 0.00 0.00 0.00 2.44
3085 3131 2.226674 AGCTCGCTCTTTTACCTTTTGC 59.773 45.455 0.00 0.00 0.00 3.68
3086 3132 2.031157 GCTCGCTCTTTTACCTTTTGCA 60.031 45.455 0.00 0.00 0.00 4.08
3088 3134 2.292292 TCGCTCTTTTACCTTTTGCACC 59.708 45.455 0.00 0.00 0.00 5.01
3089 3135 2.034053 CGCTCTTTTACCTTTTGCACCA 59.966 45.455 0.00 0.00 0.00 4.17
3090 3136 3.642705 GCTCTTTTACCTTTTGCACCAG 58.357 45.455 0.00 0.00 0.00 4.00
3091 3137 3.552890 GCTCTTTTACCTTTTGCACCAGG 60.553 47.826 8.59 8.59 36.10 4.45
3092 3138 3.888930 CTCTTTTACCTTTTGCACCAGGA 59.111 43.478 15.99 0.00 33.90 3.86
3093 3139 4.479158 TCTTTTACCTTTTGCACCAGGAT 58.521 39.130 15.99 4.56 33.90 3.24
3094 3140 4.280677 TCTTTTACCTTTTGCACCAGGATG 59.719 41.667 15.99 3.13 33.90 3.51
3095 3141 3.517296 TTACCTTTTGCACCAGGATGA 57.483 42.857 15.99 0.13 39.69 2.92
3096 3142 2.610438 ACCTTTTGCACCAGGATGAT 57.390 45.000 15.99 0.00 39.69 2.45
3098 3144 3.242011 ACCTTTTGCACCAGGATGATTT 58.758 40.909 15.99 0.00 39.69 2.17
3123 3226 2.227388 CCTTTGGCTAAAGCACAGTCTG 59.773 50.000 16.54 0.00 41.55 3.51
3151 3255 7.013274 TCCCTGTCTTTTAACAATCTGTTCAAG 59.987 37.037 0.00 1.11 40.22 3.02
3203 3307 7.378181 CACAAACTTATTCAGCATAACCCTTT 58.622 34.615 0.00 0.00 0.00 3.11
3211 3315 6.855763 TTCAGCATAACCCTTTCATCATTT 57.144 33.333 0.00 0.00 0.00 2.32
3212 3316 6.855763 TCAGCATAACCCTTTCATCATTTT 57.144 33.333 0.00 0.00 0.00 1.82
3213 3317 7.243604 TCAGCATAACCCTTTCATCATTTTT 57.756 32.000 0.00 0.00 0.00 1.94
3239 3343 3.875865 GGTAACCCTTCCATCGCTT 57.124 52.632 0.00 0.00 0.00 4.68
3261 3365 2.857592 CAGCTAATGGTGCAATGGAC 57.142 50.000 0.00 0.00 34.79 4.02
3294 3398 7.147724 CCCCCTTTTCTTTTCTTATATTGGGTC 60.148 40.741 0.00 0.00 0.00 4.46
3304 3691 8.575649 TTTCTTATATTGGGTCTTCTTGTTCC 57.424 34.615 0.00 0.00 0.00 3.62
3345 3732 4.974645 ACCAAGTTCTTACATGAGTCCA 57.025 40.909 0.00 0.00 0.00 4.02
3357 3744 4.579869 ACATGAGTCCATAAGTTGTCACC 58.420 43.478 0.00 0.00 0.00 4.02
3384 3771 8.866970 ATCCAATTCAATTTTTGGTTGCTTAT 57.133 26.923 10.04 0.00 42.47 1.73
3385 3772 8.688747 TCCAATTCAATTTTTGGTTGCTTATT 57.311 26.923 10.04 0.00 42.47 1.40
3400 3787 3.084786 GCTTATTTGGAGTGGCACTTCT 58.915 45.455 25.63 9.32 0.00 2.85
3401 3788 3.119708 GCTTATTTGGAGTGGCACTTCTG 60.120 47.826 25.63 10.38 0.00 3.02
3519 3972 5.009510 GGAGACGATGAAGAATCTGATCTGA 59.990 44.000 4.63 4.63 32.61 3.27
3565 4018 5.486735 TGCCAAAAATTCATTCCTGTCAT 57.513 34.783 0.00 0.00 0.00 3.06
3578 4031 8.877864 TCATTCCTGTCATTGGTAAATAACTT 57.122 30.769 0.00 0.00 0.00 2.66
3633 4086 9.528489 TTTTTGTTATTTAGGTTATCAGCCTCT 57.472 29.630 0.00 0.00 37.54 3.69
3644 4097 0.321671 TCAGCCTCTTCCACTTTCCG 59.678 55.000 0.00 0.00 0.00 4.30
3680 4133 1.753649 ACGATGACCAGATCCTCACTG 59.246 52.381 0.00 0.00 35.43 3.66
3698 4151 9.312904 TCCTCACTGGAATTTTGAAATATTTCT 57.687 29.630 24.77 7.97 42.94 2.52
3804 4257 1.950909 TGATGGTGACCGGTTTTTGAC 59.049 47.619 9.42 0.54 0.00 3.18
3817 4270 4.150451 CGGTTTTTGACAAATCAAGATGGC 59.850 41.667 0.50 0.00 45.54 4.40
3834 4287 5.380043 AGATGGCATATGGAAAGTAAGTGG 58.620 41.667 0.00 0.00 0.00 4.00
3840 4293 5.496556 CATATGGAAAGTAAGTGGTGTCCA 58.503 41.667 0.00 0.00 39.38 4.02
3852 4305 3.511146 AGTGGTGTCCAATTTAAGCATGG 59.489 43.478 0.00 0.00 34.18 3.66
3875 4328 5.067674 GGCCAATTATCACAACAGCTATTGA 59.932 40.000 12.63 0.00 33.57 2.57
3885 4338 5.514204 CACAACAGCTATTGAATAAGCTTGC 59.486 40.000 12.63 0.56 35.17 4.01
3889 4342 6.352516 ACAGCTATTGAATAAGCTTGCTACT 58.647 36.000 9.86 0.00 35.17 2.57
3914 4367 9.279904 CTAGATATGATTGCTAACTAGTTACGC 57.720 37.037 20.85 20.85 0.00 4.42
3924 4377 6.474427 TGCTAACTAGTTACGCAATGTGATAC 59.526 38.462 24.84 0.00 31.41 2.24
3956 4409 9.083422 TGTCCTGTAACATGGAAATTTTATCAA 57.917 29.630 0.00 0.00 33.72 2.57
3988 4441 9.705290 CTAAATGTTTGGCTGGTTTACTAATTT 57.295 29.630 0.00 0.00 0.00 1.82
4013 4466 1.787847 CACGGAAAGCTAACGCCAG 59.212 57.895 4.76 0.00 36.60 4.85
4022 4475 1.207593 CTAACGCCAGCAGCAACAC 59.792 57.895 0.00 0.00 44.04 3.32
4080 4533 9.744468 ATTTCAACTTCGTAAAGCTATTTGTTT 57.256 25.926 0.00 0.00 35.81 2.83
4139 4593 2.420687 CCCCATTACTCTTGACTCTGGC 60.421 54.545 0.00 0.00 0.00 4.85
4356 4810 4.658901 TCTGGTAAACCTTCTTTCTGTCCT 59.341 41.667 0.02 0.00 36.82 3.85
4369 4823 7.730364 TCTTTCTGTCCTTATGAACAAACTC 57.270 36.000 0.00 0.00 0.00 3.01
4464 4925 2.095969 CGCTGCCGACTTTTGATTTGTA 60.096 45.455 0.00 0.00 36.29 2.41
4698 5160 1.849219 GCTTCGTAGCAGTCTTCGATG 59.151 52.381 9.38 0.00 46.95 3.84
4699 5161 1.849219 CTTCGTAGCAGTCTTCGATGC 59.151 52.381 0.37 0.37 40.80 3.91
4843 5387 2.887151 ATTTTGAGACAGGGGGAGTG 57.113 50.000 0.00 0.00 0.00 3.51
4844 5388 1.518367 TTTTGAGACAGGGGGAGTGT 58.482 50.000 0.00 0.00 0.00 3.55
4857 5401 3.937079 GGGGGAGTGTTATACAACGAAAG 59.063 47.826 0.00 0.00 37.48 2.62
4880 5424 6.327934 AGATAAGTGATGCATGAAAAAGCAC 58.672 36.000 2.46 3.90 44.49 4.40
4895 5439 3.864789 AAGCACCTTGGATACCATAGG 57.135 47.619 13.36 13.36 37.61 2.57
4934 5478 5.559427 TCATACATAGCGCAAATTTGTGT 57.441 34.783 27.52 20.39 40.65 3.72
4940 5484 5.125417 ACATAGCGCAAATTTGTGTATTCCT 59.875 36.000 27.52 19.16 40.65 3.36
5073 5617 6.433093 GGTAAATGTCCCTTGCTCTTCTAAAA 59.567 38.462 0.00 0.00 0.00 1.52
5132 5677 9.267071 ACATAATATCCCTTGCCTTTTAAAGTT 57.733 29.630 3.91 0.00 0.00 2.66
5236 5783 5.838531 ACTTTTAACGAACCAACCATTCA 57.161 34.783 0.00 0.00 0.00 2.57
5269 5816 4.454161 CGAGATCTGTCCAGGTAGTGATAG 59.546 50.000 0.00 0.00 0.00 2.08
5328 5875 0.822944 CCCCATGCGCATGTATTGGA 60.823 55.000 39.70 5.09 37.11 3.53
5430 5977 8.859156 TCATCAATTAGTTTAAAATTTGCTCGC 58.141 29.630 0.00 0.00 0.00 5.03
5498 6045 4.431131 CCACCCCGCTTGCATCCT 62.431 66.667 0.00 0.00 0.00 3.24
5501 6048 0.466189 CACCCCGCTTGCATCCTTAT 60.466 55.000 0.00 0.00 0.00 1.73
5747 6294 2.158608 AGCTTCCCTTGCTGTTGTTACT 60.159 45.455 0.00 0.00 39.56 2.24
5823 6370 2.504367 GTGACAAGTAGCCAACATGGT 58.496 47.619 0.00 0.00 40.46 3.55
5891 6438 7.696992 TCACAGATAGTCATACTACAACACA 57.303 36.000 0.00 0.00 32.84 3.72
5964 6511 6.982141 TGTTTATGTGACTACGTTGAAGAACT 59.018 34.615 3.44 0.00 0.00 3.01
5982 6529 9.066892 TGAAGAACTTAGCTTGATAAAACATGT 57.933 29.630 0.00 0.00 0.00 3.21
6069 6616 6.739331 TTTCCTATGTGGGTTGTTTGATTT 57.261 33.333 0.00 0.00 36.20 2.17
6082 6629 9.535878 GGGTTGTTTGATTTGTAAGATTGTAAA 57.464 29.630 0.00 0.00 0.00 2.01
6240 7027 2.408050 GCATGCCAGTCTATTCCTACG 58.592 52.381 6.36 0.00 0.00 3.51
6271 7058 0.677731 CTGCGAATCAAAGAGGCCCA 60.678 55.000 0.00 0.00 0.00 5.36
6300 7087 4.567159 GCTTAACTGATCCTTGTTCGTAGG 59.433 45.833 0.00 0.00 0.00 3.18
6362 7149 6.064717 AGAAAGAATCTGCAAGTGTTAACCT 58.935 36.000 2.48 0.00 36.88 3.50
6379 7166 8.464404 GTGTTAACCTTTAAAAGAACAGGAAGT 58.536 33.333 2.48 0.00 0.00 3.01
6460 7248 5.982890 TTAGGCTGGTACGTACTTAACTT 57.017 39.130 24.07 10.97 0.00 2.66
6494 7282 6.016527 TGTCGATGTACTACCATTCTACATCC 60.017 42.308 10.12 1.09 41.74 3.51
6693 7481 8.282592 CACCATGTAGTATGCACAATATAACAC 58.717 37.037 0.00 0.00 29.56 3.32
6719 7507 4.758674 TCTTCTGATTTGCTTCCAGTCTTG 59.241 41.667 0.00 0.00 0.00 3.02
6720 7508 4.356405 TCTGATTTGCTTCCAGTCTTGA 57.644 40.909 0.00 0.00 0.00 3.02
6756 7544 7.094508 TGTTCAGATCAGACTCATTCTAGTC 57.905 40.000 0.00 0.00 45.20 2.59
6813 7601 1.203237 TGATGGGACGGTCATGTCAT 58.797 50.000 10.76 7.68 40.72 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.320870 TCCGAATAGTCCCTTTTGTGTTC 58.679 43.478 0.00 0.00 0.00 3.18
1 2 4.360951 TCCGAATAGTCCCTTTTGTGTT 57.639 40.909 0.00 0.00 0.00 3.32
2 3 4.569719 ATCCGAATAGTCCCTTTTGTGT 57.430 40.909 0.00 0.00 0.00 3.72
3 4 4.814771 GGTATCCGAATAGTCCCTTTTGTG 59.185 45.833 0.00 0.00 0.00 3.33
4 5 4.720273 AGGTATCCGAATAGTCCCTTTTGT 59.280 41.667 0.00 0.00 0.00 2.83
5 6 5.163343 TGAGGTATCCGAATAGTCCCTTTTG 60.163 44.000 0.00 0.00 0.00 2.44
6 7 4.966805 TGAGGTATCCGAATAGTCCCTTTT 59.033 41.667 0.00 0.00 0.00 2.27
7 8 4.553678 TGAGGTATCCGAATAGTCCCTTT 58.446 43.478 0.00 0.00 0.00 3.11
8 9 4.194678 TGAGGTATCCGAATAGTCCCTT 57.805 45.455 0.00 0.00 0.00 3.95
9 10 3.897657 TGAGGTATCCGAATAGTCCCT 57.102 47.619 0.00 0.00 0.00 4.20
29 30 3.958935 GCATATGCAGAGCCATTCGCTT 61.959 50.000 22.84 0.00 44.72 4.68
30 31 2.479856 GCATATGCAGAGCCATTCGCT 61.480 52.381 22.84 0.00 46.39 4.93
99 100 1.895707 GCAAGGAGATCGGCCATGG 60.896 63.158 7.63 7.63 0.00 3.66
148 149 3.432326 GGATGGTCTGGATGAGTACAACC 60.432 52.174 0.00 0.00 39.06 3.77
203 204 1.808945 CTGTGAATTGTGGGTGAGCTC 59.191 52.381 6.82 6.82 0.00 4.09
426 439 4.180946 CAGCGACCTCGACCTCGG 62.181 72.222 8.62 0.00 43.02 4.63
459 484 2.143419 GGAGATCCCGATGGTGGCT 61.143 63.158 0.00 0.00 0.00 4.75
465 490 0.972883 GGGAGAAGGAGATCCCGATG 59.027 60.000 0.00 0.00 45.63 3.84
466 491 3.466714 GGGAGAAGGAGATCCCGAT 57.533 57.895 0.00 0.00 45.63 4.18
491 516 0.326927 GAATTCCGGGGTTGGTCAGA 59.673 55.000 0.00 0.00 0.00 3.27
499 524 0.255890 CCTGATGTGAATTCCGGGGT 59.744 55.000 0.00 0.00 0.00 4.95
500 525 0.546122 TCCTGATGTGAATTCCGGGG 59.454 55.000 0.00 0.00 0.00 5.73
502 527 3.347216 AGTTTCCTGATGTGAATTCCGG 58.653 45.455 2.27 0.00 0.00 5.14
504 529 4.142816 CGTGAGTTTCCTGATGTGAATTCC 60.143 45.833 2.27 0.00 0.00 3.01
508 533 3.744238 TCGTGAGTTTCCTGATGTGAA 57.256 42.857 0.00 0.00 0.00 3.18
511 536 2.224281 TGCTTCGTGAGTTTCCTGATGT 60.224 45.455 0.00 0.00 0.00 3.06
522 547 0.792640 AATCGTGCTTGCTTCGTGAG 59.207 50.000 9.41 0.00 0.00 3.51
590 615 3.739300 CGAGGTAATTCGTTGCGGATTAT 59.261 43.478 5.68 0.00 39.14 1.28
591 616 3.117794 CGAGGTAATTCGTTGCGGATTA 58.882 45.455 0.00 0.00 36.41 1.75
596 621 1.521423 GATCCGAGGTAATTCGTTGCG 59.479 52.381 0.00 0.00 38.88 4.85
597 622 1.521423 CGATCCGAGGTAATTCGTTGC 59.479 52.381 0.00 0.00 38.88 4.17
599 624 2.480759 CCACGATCCGAGGTAATTCGTT 60.481 50.000 0.00 0.00 40.72 3.85
600 625 1.066605 CCACGATCCGAGGTAATTCGT 59.933 52.381 0.00 0.00 43.18 3.85
629 654 1.649267 GATTCTGCGAAATCCGGCC 59.351 57.895 0.00 0.00 39.04 6.13
709 734 2.667470 TCCTCCTCCTCATTCGGTTAG 58.333 52.381 0.00 0.00 0.00 2.34
710 735 2.840640 TCCTCCTCCTCATTCGGTTA 57.159 50.000 0.00 0.00 0.00 2.85
712 737 1.418334 CATCCTCCTCCTCATTCGGT 58.582 55.000 0.00 0.00 0.00 4.69
816 847 3.781307 CCAAGATCCACGGCCCGA 61.781 66.667 11.71 0.00 0.00 5.14
827 858 3.165071 CCACTAAAAGCCCAACCAAGAT 58.835 45.455 0.00 0.00 0.00 2.40
832 863 1.541310 GGCCCACTAAAAGCCCAACC 61.541 60.000 0.00 0.00 41.00 3.77
833 864 1.873270 CGGCCCACTAAAAGCCCAAC 61.873 60.000 0.00 0.00 44.13 3.77
834 865 1.605165 CGGCCCACTAAAAGCCCAA 60.605 57.895 0.00 0.00 44.13 4.12
861 892 4.357947 GTGTGAGTCGCTGCCCGA 62.358 66.667 5.11 0.00 45.15 5.14
871 902 0.530744 ACACGTGTGACTGTGTGAGT 59.469 50.000 22.71 0.00 46.87 3.41
884 915 2.052237 GAAACGGCAGCACACGTG 60.052 61.111 15.48 15.48 43.31 4.49
1154 1187 2.689034 CCGGCTTCTTCCTCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
1158 1191 2.736826 CCTCCCCGGCTTCTTCCTC 61.737 68.421 0.00 0.00 0.00 3.71
1302 1335 9.850628 CAATTATAATTAAGCTCATGGTCATGG 57.149 33.333 10.34 3.75 39.24 3.66
1303 1336 9.350357 GCAATTATAATTAAGCTCATGGTCATG 57.650 33.333 10.34 4.67 40.09 3.07
1304 1337 9.305555 AGCAATTATAATTAAGCTCATGGTCAT 57.694 29.630 14.27 0.00 0.00 3.06
1305 1338 8.696043 AGCAATTATAATTAAGCTCATGGTCA 57.304 30.769 14.27 0.00 0.00 4.02
1306 1339 9.403110 CAAGCAATTATAATTAAGCTCATGGTC 57.597 33.333 18.32 0.79 29.52 4.02
1307 1340 9.135189 TCAAGCAATTATAATTAAGCTCATGGT 57.865 29.630 18.32 6.10 29.52 3.55
1323 1356 7.624549 AGGTTCTATGAGTTCTCAAGCAATTA 58.375 34.615 6.60 0.00 0.00 1.40
1412 1450 5.003804 GGAGTGGTCACTGTACAATCAAAT 58.996 41.667 8.49 0.00 42.66 2.32
1432 1470 2.079170 TCAGTGGATAGCTCTGGGAG 57.921 55.000 0.00 0.00 0.00 4.30
1433 1471 2.392662 CTTCAGTGGATAGCTCTGGGA 58.607 52.381 0.00 0.00 0.00 4.37
1523 1561 1.374758 CGTGGAGTGGTGCTCTTCC 60.375 63.158 0.00 0.00 43.62 3.46
1536 1574 3.902086 TCGACCGTTGCACGTGGA 61.902 61.111 18.88 12.78 40.58 4.02
1539 1577 3.547249 ATCGTCGACCGTTGCACGT 62.547 57.895 10.58 0.00 40.58 4.49
1701 1739 3.339141 AGAGAAATTTTCGAGCTCACCC 58.661 45.455 15.40 0.00 34.02 4.61
1728 1766 0.608130 AACACTGCAGCGATGACCTA 59.392 50.000 15.27 0.00 0.00 3.08
1745 1783 2.555220 CGATGCTAACGCCGAATAAC 57.445 50.000 0.00 0.00 34.43 1.89
1963 2001 5.651576 TGAAACACTAGCCATGCATTCATTA 59.348 36.000 0.00 0.00 0.00 1.90
1980 2018 1.796459 ACGCGGTTATGTCTGAAACAC 59.204 47.619 12.47 0.00 41.75 3.32
2056 2094 4.262463 CCCAAAGAGTGAGCTTACACAGTA 60.262 45.833 11.65 0.00 42.45 2.74
2169 2210 6.756542 CAGAACGATCACATTGTTATACCTCA 59.243 38.462 0.00 0.00 37.01 3.86
2260 2303 7.068839 TCCAGTGGCACTTTAAAATACTTGAAA 59.931 33.333 19.43 0.00 0.00 2.69
2339 2382 5.938438 AGAAAGAGTGAGCAGAAAATCAC 57.062 39.130 0.00 0.00 44.97 3.06
2362 2405 4.022416 CCCGATTCTTGTTTCCAATGTCAA 60.022 41.667 0.00 0.00 0.00 3.18
2671 2717 3.874392 AGTTGCCAATGAATAACAGCC 57.126 42.857 0.00 0.00 0.00 4.85
2734 2780 1.004394 ACCCGATCCTTTTCTGGAACC 59.996 52.381 0.00 0.00 39.85 3.62
2735 2781 2.491675 ACCCGATCCTTTTCTGGAAC 57.508 50.000 0.00 0.00 39.85 3.62
2737 2783 1.280998 GGAACCCGATCCTTTTCTGGA 59.719 52.381 0.00 0.00 40.82 3.86
2761 2807 6.312918 TGCTTTCTGTTCCGTTATCTTATGAC 59.687 38.462 0.00 0.00 0.00 3.06
2777 2823 6.375455 CCCAGTGAAGTTTATATGCTTTCTGT 59.625 38.462 0.00 0.00 31.67 3.41
2789 2835 8.002459 ACTTCCTTTTATTCCCAGTGAAGTTTA 58.998 33.333 0.00 0.00 38.32 2.01
2793 2839 7.996098 TTACTTCCTTTTATTCCCAGTGAAG 57.004 36.000 0.00 0.00 36.14 3.02
2795 2841 7.614192 GGATTTACTTCCTTTTATTCCCAGTGA 59.386 37.037 0.00 0.00 32.68 3.41
2796 2842 7.615757 AGGATTTACTTCCTTTTATTCCCAGTG 59.384 37.037 0.00 0.00 43.88 3.66
2797 2843 7.709601 AGGATTTACTTCCTTTTATTCCCAGT 58.290 34.615 0.00 0.00 43.88 4.00
2855 2901 1.815003 GGTCCTCCATTGCAGTTCTTG 59.185 52.381 0.00 0.00 0.00 3.02
2856 2902 1.272147 GGGTCCTCCATTGCAGTTCTT 60.272 52.381 0.00 0.00 35.00 2.52
2857 2903 0.329596 GGGTCCTCCATTGCAGTTCT 59.670 55.000 0.00 0.00 35.00 3.01
2858 2904 0.038166 TGGGTCCTCCATTGCAGTTC 59.962 55.000 0.00 0.00 41.46 3.01
2859 2905 0.482446 TTGGGTCCTCCATTGCAGTT 59.518 50.000 0.00 0.00 46.52 3.16
2860 2906 0.482446 TTTGGGTCCTCCATTGCAGT 59.518 50.000 0.00 0.00 46.52 4.40
2861 2907 1.631405 TTTTGGGTCCTCCATTGCAG 58.369 50.000 0.00 0.00 46.52 4.41
2862 2908 1.691434 GTTTTTGGGTCCTCCATTGCA 59.309 47.619 0.00 0.00 46.52 4.08
2863 2909 1.970640 AGTTTTTGGGTCCTCCATTGC 59.029 47.619 0.00 0.00 46.52 3.56
2864 2910 3.230134 TCAGTTTTTGGGTCCTCCATTG 58.770 45.455 0.00 0.00 46.52 2.82
2865 2911 3.500343 CTCAGTTTTTGGGTCCTCCATT 58.500 45.455 0.00 0.00 46.52 3.16
2866 2912 2.225117 CCTCAGTTTTTGGGTCCTCCAT 60.225 50.000 0.00 0.00 46.52 3.41
2867 2913 1.144913 CCTCAGTTTTTGGGTCCTCCA 59.855 52.381 0.00 0.00 45.43 3.86
2868 2914 1.547901 CCCTCAGTTTTTGGGTCCTCC 60.548 57.143 0.00 0.00 36.32 4.30
2872 2918 1.704641 AAGCCCTCAGTTTTTGGGTC 58.295 50.000 0.00 0.00 42.77 4.46
2874 2920 2.038659 TCAAAGCCCTCAGTTTTTGGG 58.961 47.619 0.00 0.00 43.62 4.12
2875 2921 3.493176 CCTTCAAAGCCCTCAGTTTTTGG 60.493 47.826 0.00 0.00 32.76 3.28
2877 2923 2.103094 GCCTTCAAAGCCCTCAGTTTTT 59.897 45.455 0.00 0.00 0.00 1.94
2881 2927 0.251077 CAGCCTTCAAAGCCCTCAGT 60.251 55.000 0.00 0.00 0.00 3.41
2885 2931 1.076024 TGAATCAGCCTTCAAAGCCCT 59.924 47.619 0.00 0.00 32.35 5.19
2886 2932 1.203287 GTGAATCAGCCTTCAAAGCCC 59.797 52.381 0.00 0.00 36.92 5.19
2888 2934 1.135575 CCGTGAATCAGCCTTCAAAGC 60.136 52.381 0.00 0.00 36.92 3.51
2891 2937 1.879380 CAACCGTGAATCAGCCTTCAA 59.121 47.619 0.00 0.00 36.92 2.69
2892 2938 1.522668 CAACCGTGAATCAGCCTTCA 58.477 50.000 0.00 0.00 32.84 3.02
2893 2939 0.804989 CCAACCGTGAATCAGCCTTC 59.195 55.000 0.00 0.00 0.00 3.46
2900 2946 1.737838 TCAGCATCCAACCGTGAATC 58.262 50.000 0.00 0.00 0.00 2.52
2903 2949 0.392863 CCATCAGCATCCAACCGTGA 60.393 55.000 0.00 0.00 0.00 4.35
2904 2950 0.677731 ACCATCAGCATCCAACCGTG 60.678 55.000 0.00 0.00 0.00 4.94
2905 2951 0.392998 GACCATCAGCATCCAACCGT 60.393 55.000 0.00 0.00 0.00 4.83
2907 2953 3.281727 TTAGACCATCAGCATCCAACC 57.718 47.619 0.00 0.00 0.00 3.77
2927 2973 8.397148 CAAAATAACCAGCATCAAACAGTTTTT 58.603 29.630 0.00 0.00 0.00 1.94
2928 2974 7.012232 CCAAAATAACCAGCATCAAACAGTTTT 59.988 33.333 0.00 0.00 0.00 2.43
2932 2978 4.389687 GCCAAAATAACCAGCATCAAACAG 59.610 41.667 0.00 0.00 0.00 3.16
2933 2979 4.040217 AGCCAAAATAACCAGCATCAAACA 59.960 37.500 0.00 0.00 0.00 2.83
2934 2980 4.389687 CAGCCAAAATAACCAGCATCAAAC 59.610 41.667 0.00 0.00 0.00 2.93
2935 2981 4.282957 TCAGCCAAAATAACCAGCATCAAA 59.717 37.500 0.00 0.00 0.00 2.69
2936 2982 3.831333 TCAGCCAAAATAACCAGCATCAA 59.169 39.130 0.00 0.00 0.00 2.57
2937 2983 3.429492 TCAGCCAAAATAACCAGCATCA 58.571 40.909 0.00 0.00 0.00 3.07
2938 2984 4.454728 TTCAGCCAAAATAACCAGCATC 57.545 40.909 0.00 0.00 0.00 3.91
2940 2986 4.888326 ATTTCAGCCAAAATAACCAGCA 57.112 36.364 0.00 0.00 0.00 4.41
2941 2987 6.572519 TCATATTTCAGCCAAAATAACCAGC 58.427 36.000 5.50 0.00 35.38 4.85
2944 2990 6.698766 CAGCTCATATTTCAGCCAAAATAACC 59.301 38.462 5.50 0.00 35.38 2.85
2945 2991 6.698766 CCAGCTCATATTTCAGCCAAAATAAC 59.301 38.462 5.50 0.00 35.38 1.89
2949 2995 3.448301 CCCAGCTCATATTTCAGCCAAAA 59.552 43.478 0.00 0.00 36.17 2.44
2950 2996 3.025978 CCCAGCTCATATTTCAGCCAAA 58.974 45.455 0.00 0.00 36.17 3.28
2952 2998 1.751733 GCCCAGCTCATATTTCAGCCA 60.752 52.381 0.00 0.00 36.17 4.75
2953 2999 0.957362 GCCCAGCTCATATTTCAGCC 59.043 55.000 0.00 0.00 36.17 4.85
2954 3000 1.607628 CAGCCCAGCTCATATTTCAGC 59.392 52.381 0.00 0.00 36.40 4.26
2955 3001 2.228059 CCAGCCCAGCTCATATTTCAG 58.772 52.381 0.00 0.00 36.40 3.02
2956 3002 1.133699 CCCAGCCCAGCTCATATTTCA 60.134 52.381 0.00 0.00 36.40 2.69
2957 3003 1.613836 CCCAGCCCAGCTCATATTTC 58.386 55.000 0.00 0.00 36.40 2.17
2959 3005 0.995675 ACCCCAGCCCAGCTCATATT 60.996 55.000 0.00 0.00 36.40 1.28
2960 3006 1.386485 ACCCCAGCCCAGCTCATAT 60.386 57.895 0.00 0.00 36.40 1.78
2961 3007 2.042762 ACCCCAGCCCAGCTCATA 59.957 61.111 0.00 0.00 36.40 2.15
2962 3008 3.736224 CACCCCAGCCCAGCTCAT 61.736 66.667 0.00 0.00 36.40 2.90
2967 3013 1.713005 ATATCTGCACCCCAGCCCAG 61.713 60.000 0.00 0.00 41.50 4.45
2968 3014 1.697394 ATATCTGCACCCCAGCCCA 60.697 57.895 0.00 0.00 41.50 5.36
2969 3015 1.073897 GATATCTGCACCCCAGCCC 59.926 63.158 0.00 0.00 41.50 5.19
2971 3017 1.073897 GGGATATCTGCACCCCAGC 59.926 63.158 2.05 0.00 41.50 4.85
2975 3021 0.038744 CATGGGGGATATCTGCACCC 59.961 60.000 14.44 14.44 34.79 4.61
2976 3022 0.773644 ACATGGGGGATATCTGCACC 59.226 55.000 2.05 0.00 36.65 5.01
2977 3023 3.788227 TTACATGGGGGATATCTGCAC 57.212 47.619 2.05 0.00 0.00 4.57
2978 3024 5.492162 ACATATTACATGGGGGATATCTGCA 59.508 40.000 2.05 0.00 0.00 4.41
2979 3025 6.006275 ACATATTACATGGGGGATATCTGC 57.994 41.667 2.05 0.00 0.00 4.26
2986 3032 9.581289 CAAACTTATTACATATTACATGGGGGA 57.419 33.333 0.00 0.00 0.00 4.81
2987 3033 8.303876 GCAAACTTATTACATATTACATGGGGG 58.696 37.037 0.00 0.00 0.00 5.40
2988 3034 8.020819 CGCAAACTTATTACATATTACATGGGG 58.979 37.037 0.00 0.00 0.00 4.96
2989 3035 8.564574 ACGCAAACTTATTACATATTACATGGG 58.435 33.333 0.00 0.00 0.00 4.00
2990 3036 9.944663 AACGCAAACTTATTACATATTACATGG 57.055 29.630 0.00 0.00 0.00 3.66
2992 3038 9.858247 CGAACGCAAACTTATTACATATTACAT 57.142 29.630 0.00 0.00 0.00 2.29
2993 3039 8.871862 ACGAACGCAAACTTATTACATATTACA 58.128 29.630 0.00 0.00 0.00 2.41
2994 3040 9.693157 AACGAACGCAAACTTATTACATATTAC 57.307 29.630 0.00 0.00 0.00 1.89
3000 3046 8.732227 GTTTTAAACGAACGCAAACTTATTACA 58.268 29.630 0.00 0.00 0.00 2.41
3001 3047 8.946935 AGTTTTAAACGAACGCAAACTTATTAC 58.053 29.630 1.95 0.00 34.70 1.89
3005 3051 8.386606 TCTAAGTTTTAAACGAACGCAAACTTA 58.613 29.630 19.98 19.98 42.89 2.24
3006 3052 7.242783 TCTAAGTTTTAAACGAACGCAAACTT 58.757 30.769 19.92 19.92 45.30 2.66
3009 3055 7.408123 TGATCTAAGTTTTAAACGAACGCAAA 58.592 30.769 1.95 0.00 36.23 3.68
3010 3056 6.946165 TGATCTAAGTTTTAAACGAACGCAA 58.054 32.000 1.95 0.00 36.23 4.85
3012 3058 5.503720 GCTGATCTAAGTTTTAAACGAACGC 59.496 40.000 1.95 0.00 36.23 4.84
3013 3059 6.732392 CAGCTGATCTAAGTTTTAAACGAACG 59.268 38.462 8.42 0.00 36.23 3.95
3014 3060 7.793902 TCAGCTGATCTAAGTTTTAAACGAAC 58.206 34.615 13.74 0.00 36.23 3.95
3015 3061 7.956420 TCAGCTGATCTAAGTTTTAAACGAA 57.044 32.000 13.74 0.00 36.23 3.85
3016 3062 8.547967 AATCAGCTGATCTAAGTTTTAAACGA 57.452 30.769 28.83 0.00 32.87 3.85
3017 3063 9.907576 CTAATCAGCTGATCTAAGTTTTAAACG 57.092 33.333 28.83 1.94 32.87 3.60
3018 3064 9.709600 GCTAATCAGCTGATCTAAGTTTTAAAC 57.290 33.333 28.83 7.76 44.93 2.01
3045 3091 0.178068 TAAAGCTGCCGCCTCCTAAG 59.822 55.000 0.00 0.00 36.60 2.18
3047 3093 1.823295 CTAAAGCTGCCGCCTCCTA 59.177 57.895 0.00 0.00 36.60 2.94
3048 3094 2.586792 CTAAAGCTGCCGCCTCCT 59.413 61.111 0.00 0.00 36.60 3.69
3049 3095 3.205536 GCTAAAGCTGCCGCCTCC 61.206 66.667 0.00 0.00 38.21 4.30
3059 3105 3.263261 AGGTAAAAGAGCGAGCTAAAGC 58.737 45.455 0.00 0.00 42.49 3.51
3060 3106 5.864628 AAAGGTAAAAGAGCGAGCTAAAG 57.135 39.130 0.00 0.00 0.00 1.85
3061 3107 5.562113 GCAAAAGGTAAAAGAGCGAGCTAAA 60.562 40.000 0.00 0.00 0.00 1.85
3062 3108 4.083484 GCAAAAGGTAAAAGAGCGAGCTAA 60.083 41.667 0.00 0.00 0.00 3.09
3063 3109 3.435671 GCAAAAGGTAAAAGAGCGAGCTA 59.564 43.478 0.00 0.00 0.00 3.32
3064 3110 2.226674 GCAAAAGGTAAAAGAGCGAGCT 59.773 45.455 0.00 0.00 0.00 4.09
3065 3111 2.031157 TGCAAAAGGTAAAAGAGCGAGC 60.031 45.455 0.00 0.00 0.00 5.03
3066 3112 3.555518 GTGCAAAAGGTAAAAGAGCGAG 58.444 45.455 0.00 0.00 0.00 5.03
3067 3113 2.292292 GGTGCAAAAGGTAAAAGAGCGA 59.708 45.455 0.00 0.00 0.00 4.93
3068 3114 2.034053 TGGTGCAAAAGGTAAAAGAGCG 59.966 45.455 0.00 0.00 0.00 5.03
3070 3116 3.888930 TCCTGGTGCAAAAGGTAAAAGAG 59.111 43.478 14.08 0.00 34.94 2.85
3072 3118 4.280677 TCATCCTGGTGCAAAAGGTAAAAG 59.719 41.667 14.08 3.77 34.94 2.27
3075 3121 3.517296 TCATCCTGGTGCAAAAGGTAA 57.483 42.857 14.08 0.00 34.94 2.85
3076 3122 3.737559 ATCATCCTGGTGCAAAAGGTA 57.262 42.857 14.08 3.94 34.94 3.08
3077 3123 2.610438 ATCATCCTGGTGCAAAAGGT 57.390 45.000 14.08 1.75 34.94 3.50
3098 3144 3.704061 ACTGTGCTTTAGCCAAAGGAAAA 59.296 39.130 6.75 0.00 42.83 2.29
3110 3213 2.906389 ACAGGGATCAGACTGTGCTTTA 59.094 45.455 13.90 0.00 45.54 1.85
3117 3220 5.551233 TGTTAAAAGACAGGGATCAGACTG 58.449 41.667 9.06 9.06 40.48 3.51
3123 3226 7.174946 TGAACAGATTGTTAAAAGACAGGGATC 59.825 37.037 0.00 0.00 41.28 3.36
3220 3324 0.255033 AAGCGATGGAAGGGTTACCC 59.745 55.000 13.56 13.56 45.90 3.69
3221 3325 2.835027 CTAAGCGATGGAAGGGTTACC 58.165 52.381 0.00 0.00 0.00 2.85
3222 3326 2.210961 GCTAAGCGATGGAAGGGTTAC 58.789 52.381 0.00 0.00 0.00 2.50
3223 3327 1.834896 TGCTAAGCGATGGAAGGGTTA 59.165 47.619 0.00 0.00 0.00 2.85
3224 3328 0.618458 TGCTAAGCGATGGAAGGGTT 59.382 50.000 0.00 0.00 0.00 4.11
3225 3329 0.179000 CTGCTAAGCGATGGAAGGGT 59.821 55.000 0.00 0.00 0.00 4.34
3226 3330 1.162800 GCTGCTAAGCGATGGAAGGG 61.163 60.000 0.00 0.00 40.27 3.95
3227 3331 2.315246 GCTGCTAAGCGATGGAAGG 58.685 57.895 0.00 0.00 40.27 3.46
3237 3341 3.243301 CCATTGCACCATTAGCTGCTAAG 60.243 47.826 24.55 15.59 34.29 2.18
3238 3342 2.689471 CCATTGCACCATTAGCTGCTAA 59.311 45.455 23.00 23.00 34.29 3.09
3239 3343 2.092484 TCCATTGCACCATTAGCTGCTA 60.092 45.455 5.02 5.02 34.29 3.49
3280 3384 7.695055 TGGAACAAGAAGACCCAATATAAGAA 58.305 34.615 0.00 0.00 31.92 2.52
3281 3385 7.037586 ACTGGAACAAGAAGACCCAATATAAGA 60.038 37.037 0.00 0.00 38.70 2.10
3282 3386 7.112779 ACTGGAACAAGAAGACCCAATATAAG 58.887 38.462 0.00 0.00 38.70 1.73
3283 3387 7.027874 ACTGGAACAAGAAGACCCAATATAA 57.972 36.000 0.00 0.00 38.70 0.98
3284 3388 6.636454 ACTGGAACAAGAAGACCCAATATA 57.364 37.500 0.00 0.00 38.70 0.86
3321 3708 5.163248 TGGACTCATGTAAGAACTTGGTTCA 60.163 40.000 12.06 0.00 44.11 3.18
3327 3714 8.157476 ACAACTTATGGACTCATGTAAGAACTT 58.843 33.333 5.74 0.00 34.96 2.66
3345 3732 5.496556 TGAATTGGATCGGTGACAACTTAT 58.503 37.500 0.00 0.00 0.00 1.73
3384 3771 3.118038 ACTTACAGAAGTGCCACTCCAAA 60.118 43.478 0.00 0.00 44.50 3.28
3385 3772 2.438021 ACTTACAGAAGTGCCACTCCAA 59.562 45.455 0.00 0.00 44.50 3.53
3466 3919 2.974794 AGCTGTCATATGAGTATGGCCA 59.025 45.455 8.56 8.56 41.26 5.36
3503 3956 8.303780 AGTTATCAGTCAGATCAGATTCTTCA 57.696 34.615 0.00 0.00 38.19 3.02
3519 3972 7.596248 GCATGTTTTCACAATGAAGTTATCAGT 59.404 33.333 0.00 0.00 37.70 3.41
3605 4058 9.528489 AGGCTGATAACCTAAATAACAAAAAGA 57.472 29.630 0.00 0.00 35.10 2.52
3644 4097 2.890808 TCGTGGCTATGATCTGGAAC 57.109 50.000 0.00 0.00 0.00 3.62
3727 4180 0.238289 CACCCATGCAAACGAGTGAC 59.762 55.000 0.00 0.00 0.00 3.67
3729 4182 1.135603 CATCACCCATGCAAACGAGTG 60.136 52.381 0.00 0.00 0.00 3.51
3731 4184 1.452110 TCATCACCCATGCAAACGAG 58.548 50.000 0.00 0.00 31.70 4.18
3732 4185 1.539388 GTTCATCACCCATGCAAACGA 59.461 47.619 0.00 0.00 31.70 3.85
3733 4186 1.541147 AGTTCATCACCCATGCAAACG 59.459 47.619 0.00 0.00 31.70 3.60
3787 4240 1.835494 TTGTCAAAAACCGGTCACCA 58.165 45.000 8.04 0.00 0.00 4.17
3793 4246 4.685628 CCATCTTGATTTGTCAAAAACCGG 59.314 41.667 0.00 0.00 0.00 5.28
3804 4257 6.812998 ACTTTCCATATGCCATCTTGATTTG 58.187 36.000 0.00 0.00 0.00 2.32
3817 4270 5.496556 TGGACACCACTTACTTTCCATATG 58.503 41.667 0.00 0.00 0.00 1.78
3834 4287 2.233431 TGGCCATGCTTAAATTGGACAC 59.767 45.455 0.00 0.00 43.64 3.67
3840 4293 6.887013 TGTGATAATTGGCCATGCTTAAATT 58.113 32.000 6.09 3.72 0.00 1.82
3852 4305 6.135290 TCAATAGCTGTTGTGATAATTGGC 57.865 37.500 20.91 0.00 0.00 4.52
3875 4328 9.160496 GCAATCATATCTAGTAGCAAGCTTATT 57.840 33.333 0.00 0.00 0.00 1.40
3889 4342 8.789762 TGCGTAACTAGTTAGCAATCATATCTA 58.210 33.333 24.84 8.59 34.66 1.98
3900 4353 5.968387 ATCACATTGCGTAACTAGTTAGC 57.032 39.130 15.68 18.92 0.00 3.09
3914 4367 5.592054 ACAGGACATAGACGTATCACATTG 58.408 41.667 0.00 0.00 0.00 2.82
3924 4377 4.649088 TCCATGTTACAGGACATAGACG 57.351 45.455 0.00 0.00 38.15 4.18
3956 4409 4.159557 ACCAGCCAAACATTTAGTGGAAT 58.840 39.130 0.00 0.00 34.05 3.01
3965 4418 7.041440 GCAAAATTAGTAAACCAGCCAAACATT 60.041 33.333 0.00 0.00 0.00 2.71
3973 4426 4.928615 TGCATGCAAAATTAGTAAACCAGC 59.071 37.500 20.30 0.00 0.00 4.85
3988 4441 1.068610 GTTAGCTTTCCGTGCATGCAA 60.069 47.619 24.58 3.69 0.00 4.08
4022 4475 3.879295 AGATGGTTCACTCAAACACACAG 59.121 43.478 0.00 0.00 33.21 3.66
4030 4483 5.034852 TGTCTTTGAGATGGTTCACTCAA 57.965 39.130 0.00 0.00 46.70 3.02
4106 4559 1.505151 TAATGGGGTGGCCTGCAGAA 61.505 55.000 17.39 0.00 0.00 3.02
4110 4564 1.453928 GAGTAATGGGGTGGCCTGC 60.454 63.158 3.32 0.00 0.00 4.85
4139 4593 5.118357 GCAATATCACTTAGCTCGATCACTG 59.882 44.000 0.00 0.00 0.00 3.66
4356 4810 7.744087 AACATAGCACAGAGTTTGTTCATAA 57.256 32.000 0.00 0.00 38.16 1.90
4444 4905 2.422276 ACAAATCAAAAGTCGGCAGC 57.578 45.000 0.00 0.00 0.00 5.25
4464 4925 7.228706 ACGAGGAAGACAAGTTTTGAAACATAT 59.771 33.333 9.08 0.00 41.30 1.78
4609 5070 7.608308 ATTAACAGAAGCAGATTTCAGAGAC 57.392 36.000 0.00 0.00 0.00 3.36
4694 5156 2.061773 AGAAGACAAACGTGAGCATCG 58.938 47.619 0.00 0.00 38.61 3.84
4698 5160 5.847670 AATTAGAGAAGACAAACGTGAGC 57.152 39.130 0.00 0.00 0.00 4.26
4699 5161 7.869016 TGTAATTAGAGAAGACAAACGTGAG 57.131 36.000 0.00 0.00 0.00 3.51
4816 5360 5.970640 TCCCCCTGTCTCAAAATATAAGACT 59.029 40.000 3.69 0.00 40.07 3.24
4843 5387 8.600625 TGCATCACTTATCTTTCGTTGTATAAC 58.399 33.333 0.00 0.00 0.00 1.89
4844 5388 8.710835 TGCATCACTTATCTTTCGTTGTATAA 57.289 30.769 0.00 0.00 0.00 0.98
4857 5401 5.517770 GGTGCTTTTTCATGCATCACTTATC 59.482 40.000 0.00 0.00 41.45 1.75
4880 5424 4.771114 TCAACACCTATGGTATCCAAGG 57.229 45.455 12.15 12.15 36.95 3.61
4895 5439 5.941733 TGTATGAACATTCTGCATCAACAC 58.058 37.500 0.00 0.00 0.00 3.32
4962 5506 7.514721 ACAGGGTAATTCCGTCATGTTATTAT 58.485 34.615 0.00 0.00 37.00 1.28
5159 5705 9.764363 TGCTAACTACTGGATATTCTTTATGTG 57.236 33.333 0.00 0.00 0.00 3.21
5223 5770 5.050431 CGGTGAAAATTTGAATGGTTGGTTC 60.050 40.000 0.00 0.00 0.00 3.62
5236 5783 4.651778 TGGACAGATCTCGGTGAAAATTT 58.348 39.130 0.00 0.00 0.00 1.82
5328 5875 1.925255 ACACCCTTGACCATCCATGAT 59.075 47.619 0.00 0.00 0.00 2.45
5430 5977 9.691362 AATGTAGTGTTAATTTTAAGCAAGTGG 57.309 29.630 0.00 0.00 0.00 4.00
5475 6022 3.717294 CAAGCGGGGTGGGCTAGT 61.717 66.667 0.00 0.00 40.53 2.57
5517 6064 6.795098 ACAGCAATTAGTGACACGAAATAA 57.205 33.333 5.19 0.00 0.00 1.40
5747 6294 2.453521 ACTCCACCGCTAAGACATGTA 58.546 47.619 0.00 0.00 0.00 2.29
5823 6370 8.421249 AATTCAATGATTTTACCTTCTCCACA 57.579 30.769 0.00 0.00 0.00 4.17
5870 6417 8.409371 ACATCTGTGTTGTAGTATGACTATCTG 58.591 37.037 0.00 0.00 34.01 2.90
5964 6511 5.065474 GCCCGTACATGTTTTATCAAGCTAA 59.935 40.000 2.30 0.00 0.00 3.09
5982 6529 2.102109 TTGAACCGCAGAAGCCCGTA 62.102 55.000 0.00 0.00 37.52 4.02
5984 6531 2.187599 CTTTGAACCGCAGAAGCCCG 62.188 60.000 0.00 0.00 37.52 6.13
6053 6600 6.723298 ATCTTACAAATCAAACAACCCACA 57.277 33.333 0.00 0.00 0.00 4.17
6082 6629 9.768215 TGAATCCTTAGGAAAAATTTCTATGGT 57.232 29.630 4.56 1.50 37.35 3.55
6091 6640 7.910584 AGTGCAAATGAATCCTTAGGAAAAAT 58.089 30.769 4.56 0.00 34.34 1.82
6240 7027 4.173036 TGATTCGCAGGATTTCCAAAAC 57.827 40.909 0.00 0.00 38.89 2.43
6271 7058 8.150945 ACGAACAAGGATCAGTTAAGCATATAT 58.849 33.333 0.00 0.00 0.00 0.86
6331 7118 8.677148 ACACTTGCAGATTCTTTCTAGTTAAA 57.323 30.769 0.00 0.00 31.77 1.52
6460 7248 5.242171 TGGTAGTACATCGACAACTCAAAGA 59.758 40.000 2.06 0.00 0.00 2.52
6494 7282 2.355756 CACTGGCTCCAAAATCATACCG 59.644 50.000 0.00 0.00 0.00 4.02
6652 7440 0.250124 TGGTGTGGTTCTTGCCTACG 60.250 55.000 0.00 0.00 0.00 3.51
6693 7481 5.415077 AGACTGGAAGCAAATCAGAAGAATG 59.585 40.000 0.00 0.00 37.60 2.67
6696 7484 4.630644 AGACTGGAAGCAAATCAGAAGA 57.369 40.909 0.00 0.00 37.60 2.87
6719 7507 8.324567 GTCTGATCTGAACATATTCGAAAAGTC 58.675 37.037 0.00 0.00 37.69 3.01
6720 7508 8.037758 AGTCTGATCTGAACATATTCGAAAAGT 58.962 33.333 0.00 0.00 37.69 2.66
6756 7544 6.880822 TTACTAGATTTTGATGGAACGACG 57.119 37.500 0.00 0.00 0.00 5.12
6791 7579 2.769095 TGACATGACCGTCCCATCATTA 59.231 45.455 0.00 0.00 33.18 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.