Multiple sequence alignment - TraesCS1B01G071500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G071500 chr1B 100.000 7436 0 0 1 7436 56323275 56315840 0.000000e+00 13732.0
1 TraesCS1B01G071500 chr1B 78.818 203 29 8 6816 7004 200762905 200763107 2.820000e-24 124.0
2 TraesCS1B01G071500 chr1D 94.964 6712 233 50 25 6709 36545926 36539293 0.000000e+00 10425.0
3 TraesCS1B01G071500 chr1D 84.254 362 31 12 7036 7387 36539252 36538907 5.560000e-86 329.0
4 TraesCS1B01G071500 chr1D 100.000 35 0 0 7402 7436 36538907 36538873 1.730000e-06 65.8
5 TraesCS1B01G071500 chr1A 94.656 6755 246 52 1 6713 35944393 35937712 0.000000e+00 10368.0
6 TraesCS1B01G071500 chr2A 81.500 200 23 7 6810 6995 692710574 692710375 1.290000e-32 152.0
7 TraesCS1B01G071500 chr2A 100.000 29 0 0 6842 6870 30859559 30859531 4.000000e-03 54.7
8 TraesCS1B01G071500 chr7A 82.659 173 22 5 6839 7004 7671994 7672165 6.010000e-31 147.0
9 TraesCS1B01G071500 chr6B 84.375 160 14 5 6841 6994 669355240 669355086 6.010000e-31 147.0
10 TraesCS1B01G071500 chr2B 80.488 205 23 7 6810 6998 646135298 646135501 2.800000e-29 141.0
11 TraesCS1B01G071500 chr7D 81.395 172 24 5 6839 7004 570453614 570453445 4.680000e-27 134.0
12 TraesCS1B01G071500 chr3D 82.390 159 22 1 6859 7011 376174195 376174353 4.680000e-27 134.0
13 TraesCS1B01G071500 chr6D 79.048 210 27 11 6816 7011 306320049 306319843 2.180000e-25 128.0
14 TraesCS1B01G071500 chr2D 79.024 205 27 9 6815 7004 584529730 584529933 7.830000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G071500 chr1B 56315840 56323275 7435 True 13732.0 13732 100.000000 1 7436 1 chr1B.!!$R1 7435
1 TraesCS1B01G071500 chr1D 36538873 36545926 7053 True 3606.6 10425 93.072667 25 7436 3 chr1D.!!$R1 7411
2 TraesCS1B01G071500 chr1A 35937712 35944393 6681 True 10368.0 10368 94.656000 1 6713 1 chr1A.!!$R1 6712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 695 0.034756 CCGGTGAATATCCCATCGCA 59.965 55.000 0.00 0.0 36.87 5.10 F
777 805 0.039165 GGCGGTTTTGGCTCTTCTTG 60.039 55.000 0.00 0.0 0.00 3.02 F
1472 1504 0.319728 CCTCTGTCCTGTCACCTGTG 59.680 60.000 0.00 0.0 0.00 3.66 F
1988 2027 0.394899 CTGATGAGCCAAGGTTCCCC 60.395 60.000 0.31 0.0 0.00 4.81 F
3424 3466 1.067060 GCAGAGTTGGGCGAAAAACTT 59.933 47.619 0.00 0.0 36.77 2.66 F
4672 4723 1.152756 AAACAAGCAGCGGGAGGTT 60.153 52.632 0.00 0.0 39.46 3.50 F
5761 5817 0.033405 TTACCAGGACGGGGAGAGAG 60.033 60.000 0.00 0.0 40.22 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2027 1.214589 CTCGGGGACAGGTAACACG 59.785 63.158 0.00 0.00 41.41 4.49 R
2258 2297 2.544685 CCAGCTAGGTCAACGAGATTG 58.455 52.381 0.00 0.00 39.94 2.67 R
3029 3069 2.094494 TGCCGCAAACACTTCTGAAAAA 60.094 40.909 0.00 0.00 0.00 1.94 R
3841 3892 2.663119 GCAAGTTTCATTGAATGTCGGC 59.337 45.455 4.93 4.17 31.55 5.54 R
5267 5322 1.608717 CTCGAAGGCCACCTACAGCT 61.609 60.000 5.01 0.00 31.13 4.24 R
6255 6312 0.174389 GCAGCTCCTCGATTGACTCA 59.826 55.000 0.00 0.00 0.00 3.41 R
6988 7048 0.261991 TCCGCTATCTCCCTCTTGGT 59.738 55.000 0.00 0.00 34.77 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.688159 GCAGGCAAAGCTGGGGTG 61.688 66.667 0.00 0.00 0.00 4.61
26 27 2.993264 CAGGCAAAGCTGGGGTGG 60.993 66.667 0.00 0.00 0.00 4.61
27 28 4.305956 AGGCAAAGCTGGGGTGGG 62.306 66.667 0.00 0.00 0.00 4.61
28 29 4.299796 GGCAAAGCTGGGGTGGGA 62.300 66.667 0.00 0.00 0.00 4.37
29 30 2.677875 GCAAAGCTGGGGTGGGAG 60.678 66.667 0.00 0.00 0.00 4.30
175 186 3.064987 CTGCCATTGCCTCTGCTGC 62.065 63.158 0.00 0.00 38.71 5.25
176 187 3.834799 GCCATTGCCTCTGCTGCC 61.835 66.667 0.00 0.00 38.71 4.85
177 188 2.361992 CCATTGCCTCTGCTGCCA 60.362 61.111 0.00 0.00 38.71 4.92
178 189 2.707849 CCATTGCCTCTGCTGCCAC 61.708 63.158 0.00 0.00 38.71 5.01
179 190 1.677966 CATTGCCTCTGCTGCCACT 60.678 57.895 0.00 0.00 38.71 4.00
180 191 1.677966 ATTGCCTCTGCTGCCACTG 60.678 57.895 0.00 0.00 38.71 3.66
184 195 4.031129 CTCTGCTGCCACTGCCCT 62.031 66.667 0.00 0.00 36.33 5.19
237 256 2.223971 CGACTACCACCACACTTGTCTT 60.224 50.000 0.00 0.00 0.00 3.01
238 257 3.131396 GACTACCACCACACTTGTCTTG 58.869 50.000 0.00 0.00 0.00 3.02
264 283 2.822399 GGATTGGATCGCCTCGGT 59.178 61.111 0.00 0.00 34.31 4.69
299 318 2.433318 GTCAGCGTGAGTGCTCCC 60.433 66.667 0.00 0.00 45.23 4.30
319 338 1.005975 CGTTCCTCGATCGATTTGTGC 60.006 52.381 19.78 6.39 42.86 4.57
446 465 2.295909 TGCCCAAGTTCTTGGATTTTCG 59.704 45.455 27.06 13.65 44.82 3.46
449 468 4.739436 GCCCAAGTTCTTGGATTTTCGTTT 60.739 41.667 27.06 0.00 44.82 3.60
455 474 5.065474 AGTTCTTGGATTTTCGTTTCGTTCA 59.935 36.000 0.00 0.00 0.00 3.18
461 480 6.961576 TGGATTTTCGTTTCGTTCAGTTATT 58.038 32.000 0.00 0.00 0.00 1.40
477 496 7.290857 TCAGTTATTAGTTCGTGATTTCTGC 57.709 36.000 0.00 0.00 0.00 4.26
506 525 3.754965 AGATCTGTGTTTTTGGCAGCTA 58.245 40.909 0.00 0.00 0.00 3.32
519 538 5.973899 TTGGCAGCTAATAAAATGTGACA 57.026 34.783 0.00 0.00 0.00 3.58
551 570 4.829064 TTTTCTGTCTTCCATTTCACCG 57.171 40.909 0.00 0.00 0.00 4.94
553 572 1.697432 TCTGTCTTCCATTTCACCGGT 59.303 47.619 0.00 0.00 0.00 5.28
577 604 1.377202 GAGCATGCTCCGGTTTCCA 60.377 57.895 33.31 0.00 37.11 3.53
626 653 1.666888 GGTCTGATTTGCCAAACAGCG 60.667 52.381 12.16 0.00 34.65 5.18
668 695 0.034756 CCGGTGAATATCCCATCGCA 59.965 55.000 0.00 0.00 36.87 5.10
669 696 1.542328 CCGGTGAATATCCCATCGCAA 60.542 52.381 0.00 0.00 36.87 4.85
723 751 0.809385 CTCGCTCCCGTTGTCTCTTA 59.191 55.000 0.00 0.00 35.54 2.10
739 767 5.748630 TGTCTCTTACTGCATTATTACTGCG 59.251 40.000 2.11 0.57 42.62 5.18
773 801 2.983592 CCGGCGGTTTTGGCTCTT 60.984 61.111 19.97 0.00 0.00 2.85
774 802 2.561373 CGGCGGTTTTGGCTCTTC 59.439 61.111 0.00 0.00 0.00 2.87
775 803 1.966451 CGGCGGTTTTGGCTCTTCT 60.966 57.895 0.00 0.00 0.00 2.85
776 804 1.515521 CGGCGGTTTTGGCTCTTCTT 61.516 55.000 0.00 0.00 0.00 2.52
777 805 0.039165 GGCGGTTTTGGCTCTTCTTG 60.039 55.000 0.00 0.00 0.00 3.02
778 806 0.664466 GCGGTTTTGGCTCTTCTTGC 60.664 55.000 0.00 0.00 0.00 4.01
779 807 0.954452 CGGTTTTGGCTCTTCTTGCT 59.046 50.000 0.00 0.00 0.00 3.91
803 831 4.021916 CTCCTCTGATCTGGCCAAATTTT 58.978 43.478 7.01 0.00 0.00 1.82
864 893 1.949799 ACTCTGGTTCCTGATCAGCT 58.050 50.000 17.76 0.00 0.00 4.24
901 930 9.535878 TTTTTATGTTTTACAGTTCACCATTCC 57.464 29.630 0.00 0.00 0.00 3.01
906 935 1.901591 ACAGTTCACCATTCCAGCAG 58.098 50.000 0.00 0.00 0.00 4.24
1161 1190 2.012673 GTCAATGTGCAGGTCATCCTC 58.987 52.381 0.00 0.00 43.07 3.71
1196 1225 2.291217 TGAGGAGAGCTCAGCAGTTCTA 60.291 50.000 17.77 0.00 40.14 2.10
1197 1226 2.757868 GAGGAGAGCTCAGCAGTTCTAA 59.242 50.000 17.77 0.00 40.14 2.10
1198 1227 2.760092 AGGAGAGCTCAGCAGTTCTAAG 59.240 50.000 17.77 0.00 40.14 2.18
1253 1284 2.880268 CCACTCACACTCTGCAATTTGA 59.120 45.455 0.00 0.00 0.00 2.69
1266 1297 2.557317 CAATTTGATGCATTCAGGCCC 58.443 47.619 0.00 0.00 35.27 5.80
1308 1339 1.070289 GGGAATACTCCGGTGGTGATC 59.930 57.143 8.63 8.12 43.51 2.92
1311 1342 2.454336 ATACTCCGGTGGTGATCTCA 57.546 50.000 8.63 0.00 0.00 3.27
1317 1348 1.671979 CGGTGGTGATCTCATGCAAT 58.328 50.000 0.00 0.00 0.00 3.56
1353 1384 2.900273 GCCGCCACTCAGGTCATA 59.100 61.111 0.00 0.00 40.61 2.15
1420 1451 2.743636 TCATCTTCCACGGTCACTTC 57.256 50.000 0.00 0.00 0.00 3.01
1421 1452 2.248248 TCATCTTCCACGGTCACTTCT 58.752 47.619 0.00 0.00 0.00 2.85
1426 1458 0.888619 TCCACGGTCACTTCTGCTAG 59.111 55.000 0.00 0.00 0.00 3.42
1443 1475 4.286707 TGCTAGGCTATTACCTCACTCAA 58.713 43.478 0.00 0.00 41.50 3.02
1472 1504 0.319728 CCTCTGTCCTGTCACCTGTG 59.680 60.000 0.00 0.00 0.00 3.66
1523 1561 5.518812 TGTTGTTGACTTCATGTATGCAAC 58.481 37.500 13.39 13.39 36.92 4.17
1524 1562 5.299028 TGTTGTTGACTTCATGTATGCAACT 59.701 36.000 17.87 0.00 37.21 3.16
1525 1563 5.361135 TGTTGACTTCATGTATGCAACTG 57.639 39.130 17.87 0.00 37.21 3.16
1526 1564 4.161333 GTTGACTTCATGTATGCAACTGC 58.839 43.478 13.16 0.00 42.50 4.40
1736 1774 3.322191 ACCAGAAAGGCCAAGGTAAAA 57.678 42.857 5.01 0.00 43.14 1.52
1762 1801 8.918961 TTGTTAACATTTTGTACTTGAAGTGG 57.081 30.769 9.56 0.00 0.00 4.00
1783 1822 7.666623 AGTGGATTAAAAATGTACCTTTGGTG 58.333 34.615 0.00 0.00 36.19 4.17
1988 2027 0.394899 CTGATGAGCCAAGGTTCCCC 60.395 60.000 0.31 0.00 0.00 4.81
2258 2297 5.221204 GGAGATGATCAAAATTGGGAAGCTC 60.221 44.000 0.00 0.00 0.00 4.09
2267 2306 2.859165 TTGGGAAGCTCAATCTCGTT 57.141 45.000 0.00 0.00 0.00 3.85
2270 2309 2.003301 GGGAAGCTCAATCTCGTTGAC 58.997 52.381 0.00 0.00 41.79 3.18
2548 2588 2.009681 TCTCCTGACTGCACCTGTTA 57.990 50.000 0.00 0.00 0.00 2.41
2938 2978 7.461749 TCAAGGACCTTTACTCTGAAATTGAT 58.538 34.615 3.21 0.00 0.00 2.57
2961 3001 3.066203 CGCCTTAAACAAGGTTTGTCTGT 59.934 43.478 4.69 0.00 44.59 3.41
3279 3320 4.902448 AGAGGCTAGGGATAAGGTTAGTTG 59.098 45.833 0.00 0.00 0.00 3.16
3280 3321 4.632292 AGGCTAGGGATAAGGTTAGTTGT 58.368 43.478 0.00 0.00 0.00 3.32
3281 3322 5.785123 AGGCTAGGGATAAGGTTAGTTGTA 58.215 41.667 0.00 0.00 0.00 2.41
3359 3401 2.094675 ACACAATCTATGGGCAGCAAC 58.905 47.619 0.00 0.00 35.04 4.17
3376 3418 4.023707 CAGCAACTGGTGGAACTAAAAGAG 60.024 45.833 0.86 0.00 39.67 2.85
3424 3466 1.067060 GCAGAGTTGGGCGAAAAACTT 59.933 47.619 0.00 0.00 36.77 2.66
3441 3483 8.770828 CGAAAAACTTGAGAAAACTCAGGTATA 58.229 33.333 13.56 0.00 41.76 1.47
3475 3518 4.312443 CAGCTCATGGTTTTGCAATCTTT 58.688 39.130 0.00 0.00 0.00 2.52
3476 3519 4.387862 CAGCTCATGGTTTTGCAATCTTTC 59.612 41.667 0.00 0.00 0.00 2.62
3612 3655 9.561270 GTCTACTATCAAAGAAAAGGAATTTGC 57.439 33.333 0.00 0.00 34.63 3.68
3983 4034 3.914426 ATAGGTTCGGCATCTCAACTT 57.086 42.857 0.00 0.00 0.00 2.66
4217 4268 5.801350 TGCAATCCTTCGTATCTTCAAAG 57.199 39.130 0.00 0.00 0.00 2.77
4297 4348 4.037565 TGCTATGTAAGGTGGAGTATGACG 59.962 45.833 0.00 0.00 0.00 4.35
4672 4723 1.152756 AAACAAGCAGCGGGAGGTT 60.153 52.632 0.00 0.00 39.46 3.50
4699 4752 9.109393 TGTAATATTTTGAGGCACTAGAACATC 57.891 33.333 0.00 0.00 41.55 3.06
4709 4762 6.294473 AGGCACTAGAACATCTGATATTTGG 58.706 40.000 0.00 0.00 36.02 3.28
4776 4829 2.537792 TAAGAGCCGTGGAAGCGTCG 62.538 60.000 0.00 0.00 34.64 5.12
5092 5145 5.529060 AGAAAGAAGAAGCTGGTAAGTGTTG 59.471 40.000 0.00 0.00 0.00 3.33
5113 5166 8.607459 GTGTTGTCCATATCTTCTGTAATTCAG 58.393 37.037 0.00 0.00 44.85 3.02
5532 5587 5.751509 GGAGATTTTGGTGCTTAACGTTTTT 59.248 36.000 5.91 0.00 0.00 1.94
5657 5712 7.969690 AGATAGCATAGTCAGGTATTAGCAT 57.030 36.000 0.00 0.00 30.48 3.79
5660 5715 9.126151 GATAGCATAGTCAGGTATTAGCATAGA 57.874 37.037 0.00 0.00 30.48 1.98
5674 5729 9.717942 GTATTAGCATAGAAACTGATCTGGAAT 57.282 33.333 4.49 0.00 0.00 3.01
5680 5735 9.674824 GCATAGAAACTGATCTGGAATATTTTG 57.325 33.333 4.49 0.00 0.00 2.44
5688 5743 9.484806 ACTGATCTGGAATATTTTGGAATTTCT 57.515 29.630 4.49 0.00 0.00 2.52
5689 5744 9.962783 CTGATCTGGAATATTTTGGAATTTCTC 57.037 33.333 0.00 0.00 0.00 2.87
5709 5764 8.934507 TTTCTCTTCTATCTTAAGCTAGCAAC 57.065 34.615 18.83 0.00 0.00 4.17
5710 5765 6.730175 TCTCTTCTATCTTAAGCTAGCAACG 58.270 40.000 18.83 2.26 0.00 4.10
5711 5766 6.542735 TCTCTTCTATCTTAAGCTAGCAACGA 59.457 38.462 18.83 8.08 0.00 3.85
5717 5772 8.144478 TCTATCTTAAGCTAGCAACGATGAATT 58.856 33.333 18.83 1.18 0.00 2.17
5733 5788 5.007921 CGATGAATTGCAAGTGATCATGGTA 59.992 40.000 22.69 0.00 31.24 3.25
5740 5796 3.488047 GCAAGTGATCATGGTATGTGCAC 60.488 47.826 10.75 10.75 36.44 4.57
5761 5817 0.033405 TTACCAGGACGGGGAGAGAG 60.033 60.000 0.00 0.00 40.22 3.20
5871 5927 8.603242 TCTTCCATTGACAGTAAGTTCTTAAC 57.397 34.615 0.00 0.00 0.00 2.01
5877 5933 5.593968 TGACAGTAAGTTCTTAACGCTTCA 58.406 37.500 0.00 0.00 36.23 3.02
5903 5959 3.433306 ACTAAAACACAGGGCATAGCA 57.567 42.857 0.00 0.00 0.00 3.49
5905 5961 5.110814 ACTAAAACACAGGGCATAGCATA 57.889 39.130 0.00 0.00 0.00 3.14
5973 6029 0.108585 AAGTTGACCATGAGGCGTGT 59.891 50.000 0.00 0.00 39.06 4.49
5999 6055 0.323542 ATCGTCTCCGTTCTCACCCT 60.324 55.000 0.00 0.00 35.01 4.34
6161 6217 3.949842 TCATCCTTGACAGTGACTGAG 57.050 47.619 20.97 6.19 35.18 3.35
6191 6248 5.713025 TGCATTGCATCTTTCTCCTTAAAC 58.287 37.500 7.38 0.00 31.71 2.01
6219 6276 0.665068 TGGATGAACCGTCGTGTTCG 60.665 55.000 16.55 0.00 46.04 3.95
6246 6303 3.781770 GAGGCGGCAGATCGACCTG 62.782 68.421 13.08 1.03 39.34 4.00
6255 6312 4.087892 ATCGACCTGCCAAGCGCT 62.088 61.111 2.64 2.64 38.78 5.92
6261 6318 2.357881 CTGCCAAGCGCTGAGTCA 60.358 61.111 12.58 1.43 38.65 3.41
6311 6368 0.603569 GAGCTCCTCAGGTCGTTTCA 59.396 55.000 0.87 0.00 37.41 2.69
6327 6384 4.135153 CACGAGTCGAGGGCTGGG 62.135 72.222 21.50 0.00 0.00 4.45
6350 6407 2.125512 GCAGGCGAACGGAGACAT 60.126 61.111 0.00 0.00 0.00 3.06
6379 6436 2.125912 CGGAGGCACAAGAGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
6381 6438 2.343758 GAGGCACAAGAGTCGGCA 59.656 61.111 0.00 0.00 0.00 5.69
6382 6439 1.078848 GAGGCACAAGAGTCGGCAT 60.079 57.895 0.00 0.00 0.00 4.40
6385 6442 3.084579 CACAAGAGTCGGCATCGC 58.915 61.111 0.00 0.00 36.13 4.58
6405 6462 2.745100 TCGTCGTCGGTCAGGGAG 60.745 66.667 1.55 0.00 37.69 4.30
6447 6504 7.105241 AGCCAGAAATTAGATTCATCCAAAC 57.895 36.000 0.00 0.00 0.00 2.93
6464 6524 1.821216 AACCATGTACAAAGGAGCCG 58.179 50.000 20.82 0.00 0.00 5.52
6480 6540 4.024641 AGGAGCCGTTTGTTTAGTTTTACG 60.025 41.667 0.00 0.00 0.00 3.18
6481 6541 4.260743 GGAGCCGTTTGTTTAGTTTTACGT 60.261 41.667 0.00 0.00 0.00 3.57
6494 6554 7.856145 TTAGTTTTACGTTTTACCCAGTTGA 57.144 32.000 0.00 0.00 0.00 3.18
6538 6598 9.752961 CATCCATTTGATTAATTGCTATTGTCA 57.247 29.630 3.49 5.39 0.00 3.58
6583 6643 3.305398 CTGGTCACCAGTGAAGAGTAC 57.695 52.381 16.65 0.00 45.82 2.73
6595 6655 6.078479 CAGTGAAGAGTACGTGTACTTACTG 58.922 44.000 20.33 20.33 45.63 2.74
6659 6719 6.017400 AGGCAACACAGTGAAAGAATAATG 57.983 37.500 7.81 0.00 41.41 1.90
6709 6769 8.781196 CATTGAGCTGAGTATTATGCTTAATGT 58.219 33.333 17.31 2.79 45.72 2.71
6713 6773 6.204301 AGCTGAGTATTATGCTTAATGTGCTG 59.796 38.462 13.61 8.14 30.96 4.41
6714 6774 6.304356 TGAGTATTATGCTTAATGTGCTGC 57.696 37.500 13.61 0.00 30.64 5.25
6716 6776 6.318396 TGAGTATTATGCTTAATGTGCTGCAA 59.682 34.615 2.77 0.00 38.96 4.08
6717 6777 6.498304 AGTATTATGCTTAATGTGCTGCAAC 58.502 36.000 2.77 0.00 38.96 4.17
6718 6778 2.267188 ATGCTTAATGTGCTGCAACG 57.733 45.000 2.77 0.00 38.96 4.10
6719 6779 0.950836 TGCTTAATGTGCTGCAACGT 59.049 45.000 2.77 0.00 32.12 3.99
6721 6781 1.715519 GCTTAATGTGCTGCAACGTTG 59.284 47.619 23.90 23.90 31.77 4.10
6723 6783 2.397777 TAATGTGCTGCAACGTTGTG 57.602 45.000 27.78 21.04 31.77 3.33
6724 6784 0.737804 AATGTGCTGCAACGTTGTGA 59.262 45.000 27.78 14.81 0.00 3.58
6725 6785 0.737804 ATGTGCTGCAACGTTGTGAA 59.262 45.000 27.78 14.08 0.00 3.18
6726 6786 0.523519 TGTGCTGCAACGTTGTGAAA 59.476 45.000 27.78 10.47 0.00 2.69
6727 6787 1.068264 TGTGCTGCAACGTTGTGAAAA 60.068 42.857 27.78 9.80 0.00 2.29
6728 6788 1.583404 GTGCTGCAACGTTGTGAAAAG 59.417 47.619 27.78 17.83 0.00 2.27
6729 6789 1.470494 TGCTGCAACGTTGTGAAAAGA 59.530 42.857 27.78 4.97 0.00 2.52
6730 6790 2.111756 GCTGCAACGTTGTGAAAAGAG 58.888 47.619 27.78 13.55 0.00 2.85
6731 6791 2.111756 CTGCAACGTTGTGAAAAGAGC 58.888 47.619 27.78 11.85 0.00 4.09
6732 6792 1.202245 TGCAACGTTGTGAAAAGAGCC 60.202 47.619 27.78 8.94 0.00 4.70
6733 6793 1.864029 GCAACGTTGTGAAAAGAGCCC 60.864 52.381 27.78 4.40 0.00 5.19
6734 6794 0.661020 AACGTTGTGAAAAGAGCCCG 59.339 50.000 0.00 0.00 0.00 6.13
6735 6795 0.463116 ACGTTGTGAAAAGAGCCCGT 60.463 50.000 0.00 0.00 0.00 5.28
6736 6796 1.202557 ACGTTGTGAAAAGAGCCCGTA 60.203 47.619 0.00 0.00 0.00 4.02
6737 6797 2.073816 CGTTGTGAAAAGAGCCCGTAT 58.926 47.619 0.00 0.00 0.00 3.06
6738 6798 2.159707 CGTTGTGAAAAGAGCCCGTATG 60.160 50.000 0.00 0.00 0.00 2.39
6739 6799 1.448985 TGTGAAAAGAGCCCGTATGC 58.551 50.000 0.00 0.00 0.00 3.14
6740 6800 1.271108 TGTGAAAAGAGCCCGTATGCA 60.271 47.619 0.00 0.00 0.00 3.96
6741 6801 1.130561 GTGAAAAGAGCCCGTATGCAC 59.869 52.381 0.00 0.00 0.00 4.57
6742 6802 1.003118 TGAAAAGAGCCCGTATGCACT 59.997 47.619 0.00 0.00 33.39 4.40
6743 6803 2.235155 TGAAAAGAGCCCGTATGCACTA 59.765 45.455 0.00 0.00 31.67 2.74
6744 6804 2.604046 AAAGAGCCCGTATGCACTAG 57.396 50.000 0.00 0.00 31.67 2.57
6745 6805 1.486211 AAGAGCCCGTATGCACTAGT 58.514 50.000 0.00 0.00 31.67 2.57
6746 6806 2.359981 AGAGCCCGTATGCACTAGTA 57.640 50.000 0.00 0.00 30.05 1.82
6747 6807 1.955080 AGAGCCCGTATGCACTAGTAC 59.045 52.381 0.00 0.00 30.05 2.73
6748 6808 1.000496 GAGCCCGTATGCACTAGTACC 60.000 57.143 0.00 0.00 0.00 3.34
6749 6809 1.038280 GCCCGTATGCACTAGTACCT 58.962 55.000 0.00 0.00 0.00 3.08
6750 6810 1.000496 GCCCGTATGCACTAGTACCTC 60.000 57.143 0.00 0.00 0.00 3.85
6751 6811 2.584236 CCCGTATGCACTAGTACCTCT 58.416 52.381 0.00 0.00 0.00 3.69
6752 6812 2.293677 CCCGTATGCACTAGTACCTCTG 59.706 54.545 0.00 0.00 0.00 3.35
6753 6813 2.950309 CCGTATGCACTAGTACCTCTGT 59.050 50.000 0.00 0.00 0.00 3.41
6754 6814 3.003482 CCGTATGCACTAGTACCTCTGTC 59.997 52.174 0.00 0.00 0.00 3.51
6755 6815 3.003482 CGTATGCACTAGTACCTCTGTCC 59.997 52.174 0.00 0.00 0.00 4.02
6756 6816 2.901338 TGCACTAGTACCTCTGTCCT 57.099 50.000 0.00 0.00 0.00 3.85
6757 6817 3.170991 TGCACTAGTACCTCTGTCCTT 57.829 47.619 0.00 0.00 0.00 3.36
6758 6818 2.826128 TGCACTAGTACCTCTGTCCTTG 59.174 50.000 0.00 0.00 0.00 3.61
6759 6819 2.826725 GCACTAGTACCTCTGTCCTTGT 59.173 50.000 0.00 0.00 0.00 3.16
6760 6820 3.258622 GCACTAGTACCTCTGTCCTTGTT 59.741 47.826 0.00 0.00 0.00 2.83
6761 6821 4.262506 GCACTAGTACCTCTGTCCTTGTTT 60.263 45.833 0.00 0.00 0.00 2.83
6762 6822 5.047519 GCACTAGTACCTCTGTCCTTGTTTA 60.048 44.000 0.00 0.00 0.00 2.01
6763 6823 6.351117 GCACTAGTACCTCTGTCCTTGTTTAT 60.351 42.308 0.00 0.00 0.00 1.40
6764 6824 7.612677 CACTAGTACCTCTGTCCTTGTTTATT 58.387 38.462 0.00 0.00 0.00 1.40
6765 6825 8.746530 CACTAGTACCTCTGTCCTTGTTTATTA 58.253 37.037 0.00 0.00 0.00 0.98
6766 6826 8.968969 ACTAGTACCTCTGTCCTTGTTTATTAG 58.031 37.037 0.00 0.00 0.00 1.73
6767 6827 7.793948 AGTACCTCTGTCCTTGTTTATTAGT 57.206 36.000 0.00 0.00 0.00 2.24
6768 6828 7.838884 AGTACCTCTGTCCTTGTTTATTAGTC 58.161 38.462 0.00 0.00 0.00 2.59
6769 6829 6.051179 ACCTCTGTCCTTGTTTATTAGTCC 57.949 41.667 0.00 0.00 0.00 3.85
6770 6830 5.045797 ACCTCTGTCCTTGTTTATTAGTCCC 60.046 44.000 0.00 0.00 0.00 4.46
6771 6831 5.189934 CCTCTGTCCTTGTTTATTAGTCCCT 59.810 44.000 0.00 0.00 0.00 4.20
6772 6832 6.295719 TCTGTCCTTGTTTATTAGTCCCTC 57.704 41.667 0.00 0.00 0.00 4.30
6773 6833 6.023603 TCTGTCCTTGTTTATTAGTCCCTCT 58.976 40.000 0.00 0.00 0.00 3.69
6774 6834 6.154706 TCTGTCCTTGTTTATTAGTCCCTCTC 59.845 42.308 0.00 0.00 0.00 3.20
6775 6835 5.105473 TGTCCTTGTTTATTAGTCCCTCTCG 60.105 44.000 0.00 0.00 0.00 4.04
6776 6836 5.021458 TCCTTGTTTATTAGTCCCTCTCGT 58.979 41.667 0.00 0.00 0.00 4.18
6777 6837 6.096001 GTCCTTGTTTATTAGTCCCTCTCGTA 59.904 42.308 0.00 0.00 0.00 3.43
6778 6838 6.837568 TCCTTGTTTATTAGTCCCTCTCGTAT 59.162 38.462 0.00 0.00 0.00 3.06
6779 6839 7.343833 TCCTTGTTTATTAGTCCCTCTCGTATT 59.656 37.037 0.00 0.00 0.00 1.89
6780 6840 7.985752 CCTTGTTTATTAGTCCCTCTCGTATTT 59.014 37.037 0.00 0.00 0.00 1.40
6782 6842 9.807649 TTGTTTATTAGTCCCTCTCGTATTTAC 57.192 33.333 0.00 0.00 0.00 2.01
6814 6874 8.837099 ATTTTGACCATGATTAATAACCCTCA 57.163 30.769 0.00 0.00 0.00 3.86
6815 6875 8.837099 TTTTGACCATGATTAATAACCCTCAT 57.163 30.769 0.00 0.00 0.00 2.90
6816 6876 9.928618 TTTTGACCATGATTAATAACCCTCATA 57.071 29.630 0.00 0.00 0.00 2.15
6885 6945 9.843334 TGTAACAAAAATAATATCACCGGAAAC 57.157 29.630 9.46 0.00 0.00 2.78
6893 6953 9.621629 AAATAATATCACCGGAAACTATGTTCA 57.378 29.630 9.46 0.00 0.00 3.18
6894 6954 9.621629 AATAATATCACCGGAAACTATGTTCAA 57.378 29.630 9.46 0.00 0.00 2.69
6895 6955 7.931578 AATATCACCGGAAACTATGTTCAAA 57.068 32.000 9.46 0.00 0.00 2.69
6896 6956 8.519799 AATATCACCGGAAACTATGTTCAAAT 57.480 30.769 9.46 0.00 0.00 2.32
6897 6957 9.621629 AATATCACCGGAAACTATGTTCAAATA 57.378 29.630 9.46 0.00 0.00 1.40
6898 6958 6.730960 TCACCGGAAACTATGTTCAAATAC 57.269 37.500 9.46 0.00 0.00 1.89
6899 6959 6.231951 TCACCGGAAACTATGTTCAAATACA 58.768 36.000 9.46 0.00 0.00 2.29
6900 6960 6.711194 TCACCGGAAACTATGTTCAAATACAA 59.289 34.615 9.46 0.00 0.00 2.41
6901 6961 7.228906 TCACCGGAAACTATGTTCAAATACAAA 59.771 33.333 9.46 0.00 0.00 2.83
6902 6962 8.026607 CACCGGAAACTATGTTCAAATACAAAT 58.973 33.333 9.46 0.00 0.00 2.32
6903 6963 8.581578 ACCGGAAACTATGTTCAAATACAAATT 58.418 29.630 9.46 0.00 0.00 1.82
6904 6964 9.072294 CCGGAAACTATGTTCAAATACAAATTC 57.928 33.333 0.00 0.00 0.00 2.17
6905 6965 9.619316 CGGAAACTATGTTCAAATACAAATTCA 57.381 29.630 0.00 0.00 0.00 2.57
6923 6983 9.913451 ACAAATTCAACAACATAATTTTTCGTG 57.087 25.926 0.00 0.00 32.05 4.35
6926 6986 8.864069 ATTCAACAACATAATTTTTCGTGACA 57.136 26.923 0.00 0.00 0.00 3.58
6927 6987 8.864069 TTCAACAACATAATTTTTCGTGACAT 57.136 26.923 0.00 0.00 0.00 3.06
6928 6988 8.279695 TCAACAACATAATTTTTCGTGACATG 57.720 30.769 0.00 0.00 0.00 3.21
6929 6989 6.689178 ACAACATAATTTTTCGTGACATGC 57.311 33.333 0.00 0.00 0.00 4.06
6930 6990 6.212235 ACAACATAATTTTTCGTGACATGCA 58.788 32.000 0.00 0.00 0.00 3.96
6931 6991 6.867816 ACAACATAATTTTTCGTGACATGCAT 59.132 30.769 0.00 0.00 0.00 3.96
6932 6992 7.384660 ACAACATAATTTTTCGTGACATGCATT 59.615 29.630 0.00 0.00 0.00 3.56
6933 6993 8.858186 CAACATAATTTTTCGTGACATGCATTA 58.142 29.630 0.00 0.00 0.00 1.90
6934 6994 8.978564 ACATAATTTTTCGTGACATGCATTAA 57.021 26.923 0.00 0.00 0.00 1.40
6935 6995 9.585099 ACATAATTTTTCGTGACATGCATTAAT 57.415 25.926 0.00 0.00 0.00 1.40
6942 7002 8.978564 TTTCGTGACATGCATTAATATTTTGT 57.021 26.923 0.00 0.00 0.00 2.83
6943 7003 8.978564 TTCGTGACATGCATTAATATTTTGTT 57.021 26.923 0.00 0.00 0.00 2.83
6945 7005 9.715123 TCGTGACATGCATTAATATTTTGTTAG 57.285 29.630 0.00 0.00 0.00 2.34
6946 7006 9.502145 CGTGACATGCATTAATATTTTGTTAGT 57.498 29.630 0.00 0.00 0.00 2.24
6966 7026 9.383519 TGTTAGTTAAATTCAAAATTTGGCACA 57.616 25.926 5.83 0.00 0.00 4.57
6982 7042 4.636249 TGGCACAAAATACAAAATGGACC 58.364 39.130 0.00 0.00 31.92 4.46
6983 7043 4.101585 TGGCACAAAATACAAAATGGACCA 59.898 37.500 0.00 0.00 31.92 4.02
6984 7044 5.059833 GGCACAAAATACAAAATGGACCAA 58.940 37.500 0.00 0.00 0.00 3.67
6985 7045 5.704978 GGCACAAAATACAAAATGGACCAAT 59.295 36.000 0.00 0.00 0.00 3.16
6986 7046 6.876257 GGCACAAAATACAAAATGGACCAATA 59.124 34.615 0.00 0.00 0.00 1.90
6987 7047 7.389053 GGCACAAAATACAAAATGGACCAATAA 59.611 33.333 0.00 0.00 0.00 1.40
6988 7048 8.778358 GCACAAAATACAAAATGGACCAATAAA 58.222 29.630 0.00 0.00 0.00 1.40
6990 7050 9.278978 ACAAAATACAAAATGGACCAATAAACC 57.721 29.630 0.00 0.00 0.00 3.27
6991 7051 9.277783 CAAAATACAAAATGGACCAATAAACCA 57.722 29.630 0.00 0.00 38.09 3.67
6992 7052 9.853177 AAAATACAAAATGGACCAATAAACCAA 57.147 25.926 0.00 0.00 37.24 3.67
6993 7053 9.500785 AAATACAAAATGGACCAATAAACCAAG 57.499 29.630 0.00 0.00 37.24 3.61
6994 7054 6.739331 ACAAAATGGACCAATAAACCAAGA 57.261 33.333 0.00 0.00 37.24 3.02
6995 7055 6.758254 ACAAAATGGACCAATAAACCAAGAG 58.242 36.000 0.00 0.00 37.24 2.85
6996 7056 6.165577 CAAAATGGACCAATAAACCAAGAGG 58.834 40.000 0.00 0.00 37.24 3.69
6997 7057 3.449746 TGGACCAATAAACCAAGAGGG 57.550 47.619 0.00 0.00 44.81 4.30
6998 7058 2.990284 TGGACCAATAAACCAAGAGGGA 59.010 45.455 0.00 0.00 41.15 4.20
6999 7059 3.010138 TGGACCAATAAACCAAGAGGGAG 59.990 47.826 0.00 0.00 41.15 4.30
7000 7060 3.265995 GGACCAATAAACCAAGAGGGAGA 59.734 47.826 0.00 0.00 41.15 3.71
7001 7061 4.079730 GGACCAATAAACCAAGAGGGAGAT 60.080 45.833 0.00 0.00 41.15 2.75
7002 7062 5.132144 GGACCAATAAACCAAGAGGGAGATA 59.868 44.000 0.00 0.00 41.15 1.98
7003 7063 6.253946 ACCAATAAACCAAGAGGGAGATAG 57.746 41.667 0.00 0.00 41.15 2.08
7004 7064 5.066593 CCAATAAACCAAGAGGGAGATAGC 58.933 45.833 0.00 0.00 41.15 2.97
7005 7065 2.990066 AAACCAAGAGGGAGATAGCG 57.010 50.000 0.00 0.00 41.15 4.26
7006 7066 1.123928 AACCAAGAGGGAGATAGCGG 58.876 55.000 0.00 0.00 41.15 5.52
7007 7067 0.261991 ACCAAGAGGGAGATAGCGGA 59.738 55.000 0.00 0.00 41.15 5.54
7008 7068 1.133009 ACCAAGAGGGAGATAGCGGAT 60.133 52.381 0.00 0.00 41.15 4.18
7009 7069 1.274728 CCAAGAGGGAGATAGCGGATG 59.725 57.143 0.00 0.00 40.01 3.51
7010 7070 2.242926 CAAGAGGGAGATAGCGGATGA 58.757 52.381 0.00 0.00 0.00 2.92
7011 7071 2.830923 CAAGAGGGAGATAGCGGATGAT 59.169 50.000 0.00 0.00 0.00 2.45
7012 7072 3.182887 AGAGGGAGATAGCGGATGATT 57.817 47.619 0.00 0.00 0.00 2.57
7013 7073 3.515562 AGAGGGAGATAGCGGATGATTT 58.484 45.455 0.00 0.00 0.00 2.17
7014 7074 3.906846 AGAGGGAGATAGCGGATGATTTT 59.093 43.478 0.00 0.00 0.00 1.82
7015 7075 4.020662 AGAGGGAGATAGCGGATGATTTTC 60.021 45.833 0.00 0.00 0.00 2.29
7016 7076 3.008485 AGGGAGATAGCGGATGATTTTCC 59.992 47.826 0.00 0.00 0.00 3.13
7017 7077 3.339141 GGAGATAGCGGATGATTTTCCC 58.661 50.000 0.00 0.00 31.61 3.97
7023 7083 2.091665 AGCGGATGATTTTCCCTCCATT 60.092 45.455 0.00 0.00 31.61 3.16
7024 7084 2.695147 GCGGATGATTTTCCCTCCATTT 59.305 45.455 0.00 0.00 31.61 2.32
7037 7097 9.699703 TTTTCCCTCCATTTAAAATAAGAAACG 57.300 29.630 0.00 0.00 0.00 3.60
7038 7098 8.411991 TTCCCTCCATTTAAAATAAGAAACGT 57.588 30.769 0.00 0.00 0.00 3.99
7039 7099 8.047413 TCCCTCCATTTAAAATAAGAAACGTC 57.953 34.615 0.00 0.00 0.00 4.34
7054 7122 5.116180 AGAAACGTCTGATGACAAAAGTGA 58.884 37.500 3.44 0.00 43.06 3.41
7055 7123 5.760253 AGAAACGTCTGATGACAAAAGTGAT 59.240 36.000 3.44 0.00 43.06 3.06
7086 7154 1.890174 GGTGCAAATGTACCTGGGC 59.110 57.895 12.72 0.00 45.69 5.36
7091 7159 1.094785 CAAATGTACCTGGGCGAAGG 58.905 55.000 0.00 3.46 43.57 3.46
7111 7179 3.953612 AGGCAAACATTCTTGAGTGTTCA 59.046 39.130 11.00 0.00 37.56 3.18
7124 7192 5.981088 TGAGTGTTCACCCTACGTATAAA 57.019 39.130 0.00 0.00 0.00 1.40
7132 7200 9.887629 TGTTCACCCTACGTATAAATTTTCATA 57.112 29.630 0.00 0.00 0.00 2.15
7152 7220 9.987272 TTTCATATAGAGATCACATTCATTCGT 57.013 29.630 0.00 0.00 0.00 3.85
7153 7221 8.976986 TCATATAGAGATCACATTCATTCGTG 57.023 34.615 0.00 0.00 34.34 4.35
7154 7222 8.796475 TCATATAGAGATCACATTCATTCGTGA 58.204 33.333 0.00 0.00 45.62 4.35
7164 7232 4.022068 ACATTCATTCGTGATGCTTTGGTT 60.022 37.500 0.00 0.00 35.64 3.67
7186 7254 1.422531 AAAAGCAAATCAGGCACCCA 58.577 45.000 0.00 0.00 0.00 4.51
7192 7260 3.148412 GCAAATCAGGCACCCAAAAATT 58.852 40.909 0.00 0.00 0.00 1.82
7202 7270 6.936335 CAGGCACCCAAAAATTCTTAAGAAAT 59.064 34.615 21.26 10.97 37.61 2.17
7203 7271 6.936335 AGGCACCCAAAAATTCTTAAGAAATG 59.064 34.615 21.26 16.18 37.61 2.32
7204 7272 6.934083 GGCACCCAAAAATTCTTAAGAAATGA 59.066 34.615 21.26 0.00 37.61 2.57
7205 7273 7.118245 GGCACCCAAAAATTCTTAAGAAATGAG 59.882 37.037 21.26 11.40 37.61 2.90
7206 7274 7.360353 GCACCCAAAAATTCTTAAGAAATGAGC 60.360 37.037 21.26 15.89 37.61 4.26
7207 7275 7.874528 CACCCAAAAATTCTTAAGAAATGAGCT 59.125 33.333 21.26 1.49 37.61 4.09
7208 7276 8.432013 ACCCAAAAATTCTTAAGAAATGAGCTT 58.568 29.630 21.26 7.72 37.61 3.74
7209 7277 8.929746 CCCAAAAATTCTTAAGAAATGAGCTTC 58.070 33.333 21.26 0.00 37.61 3.86
7210 7278 9.702494 CCAAAAATTCTTAAGAAATGAGCTTCT 57.298 29.630 21.26 0.00 37.61 2.85
7219 7287 4.649692 AGAAATGAGCTTCTTCTGAGCAA 58.350 39.130 5.40 0.00 31.39 3.91
7239 7307 5.870978 AGCAAATGGAATGTTATTTCTGCAC 59.129 36.000 0.00 0.00 0.00 4.57
7266 7334 5.689383 TTTTGCACAGGAGTAGAACATTC 57.311 39.130 0.00 0.00 0.00 2.67
7270 7338 3.430929 GCACAGGAGTAGAACATTCGGAT 60.431 47.826 0.00 0.00 0.00 4.18
7278 7346 7.287005 AGGAGTAGAACATTCGGATATGTGTTA 59.713 37.037 6.58 2.19 38.69 2.41
7323 7399 2.045561 TTTTCTGTTCACCCGAGCAA 57.954 45.000 0.00 0.00 31.35 3.91
7342 7418 4.458295 AGCAAAAAGTCCATGTCTGATGAG 59.542 41.667 0.00 0.00 0.00 2.90
7343 7419 4.380233 GCAAAAAGTCCATGTCTGATGAGG 60.380 45.833 0.00 0.00 0.00 3.86
7352 7428 5.427806 TCCATGTCTGATGAGGAAATCTCTT 59.572 40.000 0.00 0.00 42.86 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.314852 TCTTCTATCTGTCCCACTCCCA 59.685 50.000 0.00 0.00 0.00 4.37
25 26 3.033659 TCTTCTATCTGTCCCACTCCC 57.966 52.381 0.00 0.00 0.00 4.30
26 27 3.181470 GCTTCTTCTATCTGTCCCACTCC 60.181 52.174 0.00 0.00 0.00 3.85
27 28 3.490078 CGCTTCTTCTATCTGTCCCACTC 60.490 52.174 0.00 0.00 0.00 3.51
28 29 2.428890 CGCTTCTTCTATCTGTCCCACT 59.571 50.000 0.00 0.00 0.00 4.00
29 30 2.482142 CCGCTTCTTCTATCTGTCCCAC 60.482 54.545 0.00 0.00 0.00 4.61
237 256 2.369257 GATCCAATCCGAGCGGCTCA 62.369 60.000 27.83 11.47 34.68 4.26
238 257 1.666234 GATCCAATCCGAGCGGCTC 60.666 63.158 19.92 19.92 34.68 4.70
293 312 2.771639 CGATCGAGGAACGGGAGCA 61.772 63.158 10.26 0.00 42.82 4.26
299 318 1.005975 GCACAAATCGATCGAGGAACG 60.006 52.381 23.84 12.37 44.09 3.95
319 338 3.317430 AGAACAAGAAGCAAAGCCAGAAG 59.683 43.478 0.00 0.00 0.00 2.85
446 465 7.097342 TCACGAACTAATAACTGAACGAAAC 57.903 36.000 0.00 0.00 0.00 2.78
449 468 7.811236 AGAAATCACGAACTAATAACTGAACGA 59.189 33.333 0.00 0.00 0.00 3.85
455 474 5.220416 GCGCAGAAATCACGAACTAATAACT 60.220 40.000 0.30 0.00 0.00 2.24
461 480 1.337354 TGGCGCAGAAATCACGAACTA 60.337 47.619 10.83 0.00 0.00 2.24
519 538 9.671279 AATGGAAGACAGAAAAAGAAACAATTT 57.329 25.926 0.00 0.00 0.00 1.82
530 549 3.568007 CCGGTGAAATGGAAGACAGAAAA 59.432 43.478 0.00 0.00 0.00 2.29
551 570 0.379669 CGGAGCATGCTCAAATCACC 59.620 55.000 40.37 25.27 44.40 4.02
553 572 0.035152 ACCGGAGCATGCTCAAATCA 60.035 50.000 40.37 0.00 44.40 2.57
577 604 5.529060 GGAGATCTTTTCTAATGCCACGAAT 59.471 40.000 0.00 0.00 33.74 3.34
723 751 3.128589 CCCAAACGCAGTAATAATGCAGT 59.871 43.478 13.20 8.60 45.00 4.40
739 767 1.378646 GGCCACTAGGAGCCCAAAC 60.379 63.158 13.03 0.00 43.76 2.93
761 789 1.603931 GCAGCAAGAAGAGCCAAAACC 60.604 52.381 0.00 0.00 0.00 3.27
768 796 0.249955 AGAGGAGCAGCAAGAAGAGC 59.750 55.000 0.00 0.00 0.00 4.09
769 797 1.549620 TCAGAGGAGCAGCAAGAAGAG 59.450 52.381 0.00 0.00 0.00 2.85
770 798 1.637338 TCAGAGGAGCAGCAAGAAGA 58.363 50.000 0.00 0.00 0.00 2.87
771 799 2.168936 AGATCAGAGGAGCAGCAAGAAG 59.831 50.000 0.00 0.00 0.00 2.85
772 800 2.093606 CAGATCAGAGGAGCAGCAAGAA 60.094 50.000 0.00 0.00 0.00 2.52
773 801 1.481363 CAGATCAGAGGAGCAGCAAGA 59.519 52.381 0.00 0.00 0.00 3.02
774 802 1.473610 CCAGATCAGAGGAGCAGCAAG 60.474 57.143 0.00 0.00 0.00 4.01
775 803 0.540454 CCAGATCAGAGGAGCAGCAA 59.460 55.000 0.00 0.00 0.00 3.91
776 804 1.969200 GCCAGATCAGAGGAGCAGCA 61.969 60.000 0.00 0.00 32.99 4.41
777 805 1.227615 GCCAGATCAGAGGAGCAGC 60.228 63.158 0.00 0.00 0.00 5.25
778 806 1.335882 TGGCCAGATCAGAGGAGCAG 61.336 60.000 0.00 0.00 0.00 4.24
779 807 0.911045 TTGGCCAGATCAGAGGAGCA 60.911 55.000 5.11 0.00 0.00 4.26
1161 1190 0.900421 TCCTCACTCACCTGCATCTG 59.100 55.000 0.00 0.00 0.00 2.90
1196 1225 4.274459 GCATGACACTGAACTTCTGAACTT 59.726 41.667 0.00 0.00 0.00 2.66
1197 1226 3.812053 GCATGACACTGAACTTCTGAACT 59.188 43.478 0.00 0.00 0.00 3.01
1198 1227 3.812053 AGCATGACACTGAACTTCTGAAC 59.188 43.478 0.00 0.00 0.00 3.18
1266 1297 3.312828 CTTTGTCTCGTCTTCACTCAGG 58.687 50.000 0.00 0.00 0.00 3.86
1353 1384 2.292267 CGGTCAATCTGCTTATTGGCT 58.708 47.619 13.45 0.00 40.53 4.75
1420 1451 3.891977 TGAGTGAGGTAATAGCCTAGCAG 59.108 47.826 0.00 0.00 39.34 4.24
1421 1452 3.910989 TGAGTGAGGTAATAGCCTAGCA 58.089 45.455 0.00 0.00 39.34 3.49
1426 1458 4.130118 CACCATTGAGTGAGGTAATAGCC 58.870 47.826 0.00 0.00 40.34 3.93
1523 1561 8.725148 AGACTAAATATGAGTCAAAACTTGCAG 58.275 33.333 16.49 0.00 44.86 4.41
1524 1562 8.621532 AGACTAAATATGAGTCAAAACTTGCA 57.378 30.769 16.49 0.00 44.86 4.08
1688 1726 6.318900 CACCTCCTTCCATTGTATAGGTTTTC 59.681 42.308 0.00 0.00 33.67 2.29
1736 1774 9.528018 CCACTTCAAGTACAAAATGTTAACAAT 57.472 29.630 13.23 0.25 0.00 2.71
1761 1800 6.367695 GCACACCAAAGGTACATTTTTAATCC 59.632 38.462 2.09 0.00 32.11 3.01
1762 1801 6.926272 TGCACACCAAAGGTACATTTTTAATC 59.074 34.615 2.09 0.00 32.11 1.75
1783 1822 2.417243 GCCAATGGTAAGGAACATGCAC 60.417 50.000 0.00 0.00 0.00 4.57
1988 2027 1.214589 CTCGGGGACAGGTAACACG 59.785 63.158 0.00 0.00 41.41 4.49
2258 2297 2.544685 CCAGCTAGGTCAACGAGATTG 58.455 52.381 0.00 0.00 39.94 2.67
2270 2309 7.116948 CGTGATATATTTTCTGAACCAGCTAGG 59.883 40.741 0.00 0.00 45.67 3.02
2777 2817 9.541724 CATCAATATTTACGGATTATCCAAACG 57.458 33.333 12.17 0.00 35.91 3.60
3028 3068 3.123050 GCCGCAAACACTTCTGAAAAAT 58.877 40.909 0.00 0.00 0.00 1.82
3029 3069 2.094494 TGCCGCAAACACTTCTGAAAAA 60.094 40.909 0.00 0.00 0.00 1.94
3211 3252 4.365514 TTTTTCTGTCATGGCCTGAGTA 57.634 40.909 3.32 0.00 33.51 2.59
3279 3320 6.038161 TGGTTTGCTGTGACATGCTTATATAC 59.962 38.462 8.13 0.00 0.00 1.47
3280 3321 6.118852 TGGTTTGCTGTGACATGCTTATATA 58.881 36.000 8.13 0.00 0.00 0.86
3281 3322 4.949238 TGGTTTGCTGTGACATGCTTATAT 59.051 37.500 8.13 0.00 0.00 0.86
3359 3401 6.655003 TCATAAAGCTCTTTTAGTTCCACCAG 59.345 38.462 0.00 0.00 34.86 4.00
3768 3811 5.871524 TGAGCTTGTGATTCTATGTCAAGAC 59.128 40.000 7.28 0.00 38.06 3.01
3785 3828 6.318144 ACTGAAATCAAGTATGGATGAGCTTG 59.682 38.462 0.00 0.00 39.52 4.01
3841 3892 2.663119 GCAAGTTTCATTGAATGTCGGC 59.337 45.455 4.93 4.17 31.55 5.54
3983 4034 3.054434 CCATCACAAAGTAGGGGTGATCA 60.054 47.826 3.70 0.00 46.29 2.92
4217 4268 3.384789 GGGGAAACTTAATTGCCTCATCC 59.615 47.826 0.14 0.00 40.37 3.51
4297 4348 5.709966 CCTAAAAATGGGTAACTCAAGCAC 58.290 41.667 0.00 0.00 0.00 4.40
4672 4723 8.856153 TGTTCTAGTGCCTCAAAATATTACAA 57.144 30.769 0.00 0.00 0.00 2.41
4709 4762 4.846779 TGTTGGAACAGAATGGCTTAAC 57.153 40.909 0.00 0.00 43.62 2.01
4776 4829 5.057149 ACAGTAATATTTGAGATGGACCGC 58.943 41.667 0.00 0.00 0.00 5.68
5113 5166 6.478344 CACTCAGATAGTCACAGGCTAAAATC 59.522 42.308 0.00 0.00 35.76 2.17
5185 5240 9.958180 TTCAACTCCTTAATCAATCATAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
5201 5256 6.204882 GCAGTTGTGTAATAGTTCAACTCCTT 59.795 38.462 0.00 0.00 45.36 3.36
5267 5322 1.608717 CTCGAAGGCCACCTACAGCT 61.609 60.000 5.01 0.00 31.13 4.24
5309 5364 3.645884 TGAAATTTCTTTCTGCAGCTGC 58.354 40.909 31.89 31.89 41.18 5.25
5532 5587 6.697019 GTCTTAGTTTTGCTGCAGATTTCAAA 59.303 34.615 20.43 15.08 0.00 2.69
5534 5589 5.560760 CGTCTTAGTTTTGCTGCAGATTTCA 60.561 40.000 20.43 2.14 0.00 2.69
5657 5712 9.973661 TTCCAAAATATTCCAGATCAGTTTCTA 57.026 29.630 0.00 0.00 0.00 2.10
5680 5735 9.203421 GCTAGCTTAAGATAGAAGAGAAATTCC 57.797 37.037 27.68 5.17 36.19 3.01
5681 5736 9.757227 TGCTAGCTTAAGATAGAAGAGAAATTC 57.243 33.333 27.68 9.21 36.19 2.17
5687 5742 6.730175 TCGTTGCTAGCTTAAGATAGAAGAG 58.270 40.000 27.68 16.17 36.19 2.85
5688 5743 6.694877 TCGTTGCTAGCTTAAGATAGAAGA 57.305 37.500 27.68 17.32 36.19 2.87
5689 5744 7.142021 TCATCGTTGCTAGCTTAAGATAGAAG 58.858 38.462 27.68 15.67 36.19 2.85
5709 5764 4.201980 ACCATGATCACTTGCAATTCATCG 60.202 41.667 0.00 2.70 0.00 3.84
5710 5765 5.258456 ACCATGATCACTTGCAATTCATC 57.742 39.130 0.00 0.00 0.00 2.92
5711 5766 6.322969 ACATACCATGATCACTTGCAATTCAT 59.677 34.615 0.00 4.18 0.00 2.57
5717 5772 2.684374 GCACATACCATGATCACTTGCA 59.316 45.455 0.00 0.00 0.00 4.08
5721 5776 3.920231 AGTGCACATACCATGATCACT 57.080 42.857 21.04 10.14 39.50 3.41
5722 5777 4.970662 AAAGTGCACATACCATGATCAC 57.029 40.909 21.04 1.34 36.80 3.06
5723 5778 4.881273 GGTAAAGTGCACATACCATGATCA 59.119 41.667 31.37 0.00 39.12 2.92
5724 5779 4.881273 TGGTAAAGTGCACATACCATGATC 59.119 41.667 33.50 17.60 43.06 2.92
5733 5788 1.610624 CCGTCCTGGTAAAGTGCACAT 60.611 52.381 21.04 3.48 0.00 3.21
5740 5796 0.824759 CTCTCCCCGTCCTGGTAAAG 59.175 60.000 0.00 0.00 35.15 1.85
5761 5817 2.432972 CGCAGCAATTGGTTGGCC 60.433 61.111 7.57 0.00 35.83 5.36
5871 5927 5.107453 CCTGTGTTTTAGTAACTCTGAAGCG 60.107 44.000 0.00 0.00 0.00 4.68
5877 5933 4.699925 TGCCCTGTGTTTTAGTAACTCT 57.300 40.909 0.00 0.00 0.00 3.24
5905 5961 9.617523 AAGTTGTCATCAAAATGAGGAAAAATT 57.382 25.926 5.18 5.18 42.53 1.82
5955 6011 0.603707 CACACGCCTCATGGTCAACT 60.604 55.000 0.00 0.00 35.27 3.16
5999 6055 1.602323 GTCATTTCCCCGTGGCACA 60.602 57.895 19.09 0.00 0.00 4.57
6179 6236 4.124238 CACCTGTCACGTTTAAGGAGAAA 58.876 43.478 12.85 0.00 33.78 2.52
6191 6248 1.014044 CGGTTCATCCACCTGTCACG 61.014 60.000 0.00 0.00 34.22 4.35
6235 6292 2.169789 CGCTTGGCAGGTCGATCTG 61.170 63.158 21.67 21.67 37.79 2.90
6237 6294 3.567797 GCGCTTGGCAGGTCGATC 61.568 66.667 15.17 0.00 42.87 3.69
6246 6303 1.427020 GATTGACTCAGCGCTTGGC 59.573 57.895 7.50 6.63 44.05 4.52
6255 6312 0.174389 GCAGCTCCTCGATTGACTCA 59.826 55.000 0.00 0.00 0.00 3.41
6261 6318 2.496817 GTCCGCAGCTCCTCGATT 59.503 61.111 1.57 0.00 0.00 3.34
6309 6366 3.062466 CCAGCCCTCGACTCGTGA 61.062 66.667 2.07 0.00 0.00 4.35
6311 6368 4.680537 ACCCAGCCCTCGACTCGT 62.681 66.667 0.00 0.00 0.00 4.18
6327 6384 3.423154 CCGTTCGCCTGCTTCCAC 61.423 66.667 0.00 0.00 0.00 4.02
6369 6426 2.125512 GGCGATGCCGACTCTTGT 60.126 61.111 0.00 0.00 41.56 3.16
6388 6445 2.745100 CTCCCTGACCGACGACGA 60.745 66.667 9.28 0.00 42.66 4.20
6426 6483 8.472413 ACATGGTTTGGATGAATCTAATTTCTG 58.528 33.333 0.00 0.00 0.00 3.02
6445 6502 1.073284 ACGGCTCCTTTGTACATGGTT 59.927 47.619 13.10 0.00 0.00 3.67
6447 6504 1.821216 AACGGCTCCTTTGTACATGG 58.179 50.000 0.00 2.51 0.00 3.66
6464 6524 8.680707 TGGGTAAAACGTAAAACTAAACAAAC 57.319 30.769 0.00 0.00 0.00 2.93
6480 6540 4.944048 ACAGCAAATCAACTGGGTAAAAC 58.056 39.130 0.00 0.00 38.25 2.43
6481 6541 5.127845 TCAACAGCAAATCAACTGGGTAAAA 59.872 36.000 0.00 0.00 38.25 1.52
6494 6554 3.382546 GGATGGCACTATCAACAGCAAAT 59.617 43.478 0.00 0.00 0.00 2.32
6538 6598 1.215423 AGAACAGCAAACCCCTCAACT 59.785 47.619 0.00 0.00 0.00 3.16
6583 6643 2.600420 CTGATGCAGCAGTAAGTACACG 59.400 50.000 23.67 0.00 0.00 4.49
6595 6655 3.474600 ACATTAGATCCACTGATGCAGC 58.525 45.455 0.00 0.00 43.51 5.25
6659 6719 4.051237 GTCTTCCATTGGTGCTCAAAAAC 58.949 43.478 1.86 0.00 39.05 2.43
6709 6769 1.470494 TCTTTTCACAACGTTGCAGCA 59.530 42.857 27.61 8.82 0.00 4.41
6713 6773 1.477105 GGCTCTTTTCACAACGTTGC 58.523 50.000 27.61 10.41 0.00 4.17
6714 6774 1.596954 CGGGCTCTTTTCACAACGTTG 60.597 52.381 26.20 26.20 0.00 4.10
6716 6776 0.463116 ACGGGCTCTTTTCACAACGT 60.463 50.000 0.00 0.00 0.00 3.99
6717 6777 1.504359 TACGGGCTCTTTTCACAACG 58.496 50.000 0.00 0.00 0.00 4.10
6718 6778 2.414161 GCATACGGGCTCTTTTCACAAC 60.414 50.000 0.00 0.00 0.00 3.32
6719 6779 1.810151 GCATACGGGCTCTTTTCACAA 59.190 47.619 0.00 0.00 0.00 3.33
6721 6781 1.130561 GTGCATACGGGCTCTTTTCAC 59.869 52.381 0.00 0.00 34.04 3.18
6723 6783 1.739067 AGTGCATACGGGCTCTTTTC 58.261 50.000 0.00 0.00 34.19 2.29
6724 6784 2.236395 ACTAGTGCATACGGGCTCTTTT 59.764 45.455 0.00 0.00 38.46 2.27
6725 6785 1.831736 ACTAGTGCATACGGGCTCTTT 59.168 47.619 0.00 0.00 38.46 2.52
6726 6786 1.486211 ACTAGTGCATACGGGCTCTT 58.514 50.000 0.00 0.00 38.46 2.85
6727 6787 1.955080 GTACTAGTGCATACGGGCTCT 59.045 52.381 5.39 5.99 40.40 4.09
6728 6788 1.000496 GGTACTAGTGCATACGGGCTC 60.000 57.143 13.26 0.00 34.04 4.70
6729 6789 1.038280 GGTACTAGTGCATACGGGCT 58.962 55.000 13.26 0.00 34.04 5.19
6730 6790 1.000496 GAGGTACTAGTGCATACGGGC 60.000 57.143 13.26 0.00 41.55 6.13
6731 6791 2.293677 CAGAGGTACTAGTGCATACGGG 59.706 54.545 13.26 0.00 41.55 5.28
6732 6792 2.950309 ACAGAGGTACTAGTGCATACGG 59.050 50.000 13.26 6.59 41.55 4.02
6733 6793 3.003482 GGACAGAGGTACTAGTGCATACG 59.997 52.174 13.26 3.05 41.55 3.06
6734 6794 4.208746 AGGACAGAGGTACTAGTGCATAC 58.791 47.826 13.26 0.00 41.55 2.39
6735 6795 4.521536 AGGACAGAGGTACTAGTGCATA 57.478 45.455 13.26 0.00 41.55 3.14
6736 6796 3.390175 AGGACAGAGGTACTAGTGCAT 57.610 47.619 13.26 5.44 41.55 3.96
6737 6797 2.826128 CAAGGACAGAGGTACTAGTGCA 59.174 50.000 13.26 0.00 41.55 4.57
6738 6798 2.826725 ACAAGGACAGAGGTACTAGTGC 59.173 50.000 5.39 3.50 41.55 4.40
6739 6799 5.470047 AAACAAGGACAGAGGTACTAGTG 57.530 43.478 5.39 0.00 41.55 2.74
6740 6800 7.793948 AATAAACAAGGACAGAGGTACTAGT 57.206 36.000 0.00 0.00 41.55 2.57
6741 6801 8.968969 ACTAATAAACAAGGACAGAGGTACTAG 58.031 37.037 0.00 0.00 41.55 2.57
6742 6802 8.890410 ACTAATAAACAAGGACAGAGGTACTA 57.110 34.615 0.00 0.00 41.55 1.82
6744 6804 7.040494 GGACTAATAAACAAGGACAGAGGTAC 58.960 42.308 0.00 0.00 0.00 3.34
6745 6805 6.155737 GGGACTAATAAACAAGGACAGAGGTA 59.844 42.308 0.00 0.00 0.00 3.08
6746 6806 5.045797 GGGACTAATAAACAAGGACAGAGGT 60.046 44.000 0.00 0.00 0.00 3.85
6747 6807 5.189934 AGGGACTAATAAACAAGGACAGAGG 59.810 44.000 0.00 0.00 36.02 3.69
6748 6808 6.155393 AGAGGGACTAATAAACAAGGACAGAG 59.845 42.308 0.00 0.00 41.55 3.35
6749 6809 6.023603 AGAGGGACTAATAAACAAGGACAGA 58.976 40.000 0.00 0.00 41.55 3.41
6750 6810 6.301169 AGAGGGACTAATAAACAAGGACAG 57.699 41.667 0.00 0.00 41.55 3.51
6751 6811 5.105473 CGAGAGGGACTAATAAACAAGGACA 60.105 44.000 0.00 0.00 41.55 4.02
6752 6812 5.105432 ACGAGAGGGACTAATAAACAAGGAC 60.105 44.000 0.00 0.00 41.55 3.85
6753 6813 5.021458 ACGAGAGGGACTAATAAACAAGGA 58.979 41.667 0.00 0.00 41.55 3.36
6754 6814 5.340439 ACGAGAGGGACTAATAAACAAGG 57.660 43.478 0.00 0.00 41.55 3.61
6755 6815 8.943909 AAATACGAGAGGGACTAATAAACAAG 57.056 34.615 0.00 0.00 41.55 3.16
6756 6816 9.807649 GTAAATACGAGAGGGACTAATAAACAA 57.192 33.333 0.00 0.00 41.55 2.83
6769 6829 7.650504 TCAAAATATGACCGTAAATACGAGAGG 59.349 37.037 14.15 0.59 41.81 3.69
6770 6830 8.570096 TCAAAATATGACCGTAAATACGAGAG 57.430 34.615 14.15 0.93 41.81 3.20
6788 6848 9.928618 TGAGGGTTATTAATCATGGTCAAAATA 57.071 29.630 0.00 0.00 0.00 1.40
6789 6849 8.837099 TGAGGGTTATTAATCATGGTCAAAAT 57.163 30.769 0.00 0.00 0.00 1.82
6790 6850 8.837099 ATGAGGGTTATTAATCATGGTCAAAA 57.163 30.769 0.00 0.00 31.36 2.44
6859 6919 9.843334 GTTTCCGGTGATATTATTTTTGTTACA 57.157 29.630 0.00 0.00 0.00 2.41
6867 6927 9.621629 TGAACATAGTTTCCGGTGATATTATTT 57.378 29.630 0.00 0.00 0.00 1.40
6868 6928 9.621629 TTGAACATAGTTTCCGGTGATATTATT 57.378 29.630 0.00 0.00 0.00 1.40
6869 6929 9.621629 TTTGAACATAGTTTCCGGTGATATTAT 57.378 29.630 0.00 0.00 0.00 1.28
6870 6930 9.621629 ATTTGAACATAGTTTCCGGTGATATTA 57.378 29.630 0.00 0.00 0.00 0.98
6871 6931 7.931578 TTTGAACATAGTTTCCGGTGATATT 57.068 32.000 0.00 0.00 0.00 1.28
6872 6932 9.052759 GTATTTGAACATAGTTTCCGGTGATAT 57.947 33.333 0.00 0.00 0.00 1.63
6873 6933 8.041919 TGTATTTGAACATAGTTTCCGGTGATA 58.958 33.333 0.00 0.00 0.00 2.15
6874 6934 6.882140 TGTATTTGAACATAGTTTCCGGTGAT 59.118 34.615 0.00 0.00 0.00 3.06
6875 6935 6.231951 TGTATTTGAACATAGTTTCCGGTGA 58.768 36.000 0.00 0.00 0.00 4.02
6876 6936 6.489127 TGTATTTGAACATAGTTTCCGGTG 57.511 37.500 0.00 0.00 0.00 4.94
6877 6937 7.513371 TTTGTATTTGAACATAGTTTCCGGT 57.487 32.000 0.00 0.00 0.00 5.28
6878 6938 8.980143 AATTTGTATTTGAACATAGTTTCCGG 57.020 30.769 0.00 0.00 0.00 5.14
6879 6939 9.619316 TGAATTTGTATTTGAACATAGTTTCCG 57.381 29.630 0.00 0.00 0.00 4.30
6897 6957 9.913451 CACGAAAAATTATGTTGTTGAATTTGT 57.087 25.926 0.00 0.00 34.01 2.83
6900 6960 9.307121 TGTCACGAAAAATTATGTTGTTGAATT 57.693 25.926 0.00 0.00 0.00 2.17
6901 6961 8.864069 TGTCACGAAAAATTATGTTGTTGAAT 57.136 26.923 0.00 0.00 0.00 2.57
6902 6962 8.750416 CATGTCACGAAAAATTATGTTGTTGAA 58.250 29.630 0.00 0.00 0.00 2.69
6903 6963 7.096271 GCATGTCACGAAAAATTATGTTGTTGA 60.096 33.333 0.00 0.00 0.00 3.18
6904 6964 7.003072 GCATGTCACGAAAAATTATGTTGTTG 58.997 34.615 0.00 0.00 0.00 3.33
6905 6965 6.699204 TGCATGTCACGAAAAATTATGTTGTT 59.301 30.769 0.00 0.00 0.00 2.83
6906 6966 6.212235 TGCATGTCACGAAAAATTATGTTGT 58.788 32.000 0.00 0.00 0.00 3.32
6907 6967 6.687653 TGCATGTCACGAAAAATTATGTTG 57.312 33.333 0.00 0.00 0.00 3.33
6908 6968 7.887996 AATGCATGTCACGAAAAATTATGTT 57.112 28.000 0.00 0.00 0.00 2.71
6909 6969 8.978564 TTAATGCATGTCACGAAAAATTATGT 57.021 26.923 0.00 0.00 0.00 2.29
6916 6976 9.416794 ACAAAATATTAATGCATGTCACGAAAA 57.583 25.926 0.00 0.00 0.00 2.29
6917 6977 8.978564 ACAAAATATTAATGCATGTCACGAAA 57.021 26.923 0.00 0.00 0.00 3.46
6918 6978 8.978564 AACAAAATATTAATGCATGTCACGAA 57.021 26.923 0.00 0.00 0.00 3.85
6919 6979 9.715123 CTAACAAAATATTAATGCATGTCACGA 57.285 29.630 0.00 0.00 0.00 4.35
6920 6980 9.502145 ACTAACAAAATATTAATGCATGTCACG 57.498 29.630 0.00 0.00 0.00 4.35
6940 7000 9.383519 TGTGCCAAATTTTGAATTTAACTAACA 57.616 25.926 10.72 0.00 0.00 2.41
6952 7012 9.512435 CATTTTGTATTTTGTGCCAAATTTTGA 57.488 25.926 10.72 0.00 0.00 2.69
6953 7013 8.753175 CCATTTTGTATTTTGTGCCAAATTTTG 58.247 29.630 1.99 1.99 0.00 2.44
6954 7014 8.689972 TCCATTTTGTATTTTGTGCCAAATTTT 58.310 25.926 1.89 0.00 0.00 1.82
6955 7015 8.134261 GTCCATTTTGTATTTTGTGCCAAATTT 58.866 29.630 1.89 0.00 0.00 1.82
6956 7016 7.255416 GGTCCATTTTGTATTTTGTGCCAAATT 60.255 33.333 1.89 2.10 0.00 1.82
6957 7017 6.206438 GGTCCATTTTGTATTTTGTGCCAAAT 59.794 34.615 1.89 0.00 0.00 2.32
6958 7018 5.529060 GGTCCATTTTGTATTTTGTGCCAAA 59.471 36.000 0.00 0.00 0.00 3.28
6959 7019 5.059833 GGTCCATTTTGTATTTTGTGCCAA 58.940 37.500 0.00 0.00 0.00 4.52
6960 7020 4.101585 TGGTCCATTTTGTATTTTGTGCCA 59.898 37.500 0.00 0.00 0.00 4.92
6961 7021 4.636249 TGGTCCATTTTGTATTTTGTGCC 58.364 39.130 0.00 0.00 0.00 5.01
6962 7022 6.799926 ATTGGTCCATTTTGTATTTTGTGC 57.200 33.333 0.00 0.00 0.00 4.57
6964 7024 9.278978 GGTTTATTGGTCCATTTTGTATTTTGT 57.721 29.630 0.00 0.00 0.00 2.83
6965 7025 9.277783 TGGTTTATTGGTCCATTTTGTATTTTG 57.722 29.630 0.00 0.00 0.00 2.44
6966 7026 9.853177 TTGGTTTATTGGTCCATTTTGTATTTT 57.147 25.926 0.00 0.00 0.00 1.82
6967 7027 9.500785 CTTGGTTTATTGGTCCATTTTGTATTT 57.499 29.630 0.00 0.00 0.00 1.40
6968 7028 8.875168 TCTTGGTTTATTGGTCCATTTTGTATT 58.125 29.630 0.00 0.00 0.00 1.89
6969 7029 8.429237 TCTTGGTTTATTGGTCCATTTTGTAT 57.571 30.769 0.00 0.00 0.00 2.29
6970 7030 7.039363 CCTCTTGGTTTATTGGTCCATTTTGTA 60.039 37.037 0.00 0.00 0.00 2.41
6971 7031 6.239572 CCTCTTGGTTTATTGGTCCATTTTGT 60.240 38.462 0.00 0.00 0.00 2.83
6972 7032 6.165577 CCTCTTGGTTTATTGGTCCATTTTG 58.834 40.000 0.00 0.00 0.00 2.44
6973 7033 5.248248 CCCTCTTGGTTTATTGGTCCATTTT 59.752 40.000 0.00 0.00 0.00 1.82
6974 7034 4.777366 CCCTCTTGGTTTATTGGTCCATTT 59.223 41.667 0.00 0.00 0.00 2.32
6975 7035 4.045334 TCCCTCTTGGTTTATTGGTCCATT 59.955 41.667 0.00 0.00 34.77 3.16
6976 7036 3.596046 TCCCTCTTGGTTTATTGGTCCAT 59.404 43.478 0.00 0.00 34.77 3.41
6977 7037 2.990284 TCCCTCTTGGTTTATTGGTCCA 59.010 45.455 0.00 0.00 34.77 4.02
6978 7038 3.265995 TCTCCCTCTTGGTTTATTGGTCC 59.734 47.826 0.00 0.00 34.77 4.46
6979 7039 4.569719 TCTCCCTCTTGGTTTATTGGTC 57.430 45.455 0.00 0.00 34.77 4.02
6980 7040 5.398012 GCTATCTCCCTCTTGGTTTATTGGT 60.398 44.000 0.00 0.00 34.77 3.67
6981 7041 5.066593 GCTATCTCCCTCTTGGTTTATTGG 58.933 45.833 0.00 0.00 34.77 3.16
6982 7042 4.752101 CGCTATCTCCCTCTTGGTTTATTG 59.248 45.833 0.00 0.00 34.77 1.90
6983 7043 4.202367 CCGCTATCTCCCTCTTGGTTTATT 60.202 45.833 0.00 0.00 34.77 1.40
6984 7044 3.325135 CCGCTATCTCCCTCTTGGTTTAT 59.675 47.826 0.00 0.00 34.77 1.40
6985 7045 2.698797 CCGCTATCTCCCTCTTGGTTTA 59.301 50.000 0.00 0.00 34.77 2.01
6986 7046 1.486726 CCGCTATCTCCCTCTTGGTTT 59.513 52.381 0.00 0.00 34.77 3.27
6987 7047 1.123928 CCGCTATCTCCCTCTTGGTT 58.876 55.000 0.00 0.00 34.77 3.67
6988 7048 0.261991 TCCGCTATCTCCCTCTTGGT 59.738 55.000 0.00 0.00 34.77 3.67
6989 7049 1.274728 CATCCGCTATCTCCCTCTTGG 59.725 57.143 0.00 0.00 0.00 3.61
6990 7050 2.242926 TCATCCGCTATCTCCCTCTTG 58.757 52.381 0.00 0.00 0.00 3.02
6991 7051 2.685106 TCATCCGCTATCTCCCTCTT 57.315 50.000 0.00 0.00 0.00 2.85
6992 7052 2.917713 ATCATCCGCTATCTCCCTCT 57.082 50.000 0.00 0.00 0.00 3.69
6993 7053 3.971245 AAATCATCCGCTATCTCCCTC 57.029 47.619 0.00 0.00 0.00 4.30
6994 7054 3.008485 GGAAAATCATCCGCTATCTCCCT 59.992 47.826 0.00 0.00 0.00 4.20
6995 7055 3.339141 GGAAAATCATCCGCTATCTCCC 58.661 50.000 0.00 0.00 0.00 4.30
6996 7056 3.008485 AGGGAAAATCATCCGCTATCTCC 59.992 47.826 0.00 0.00 40.62 3.71
6997 7057 4.249661 GAGGGAAAATCATCCGCTATCTC 58.750 47.826 0.00 0.00 40.62 2.75
6998 7058 3.008485 GGAGGGAAAATCATCCGCTATCT 59.992 47.826 0.00 0.00 40.62 1.98
6999 7059 3.244561 TGGAGGGAAAATCATCCGCTATC 60.245 47.826 0.00 0.00 40.62 2.08
7000 7060 2.711009 TGGAGGGAAAATCATCCGCTAT 59.289 45.455 0.00 0.00 40.62 2.97
7001 7061 2.123589 TGGAGGGAAAATCATCCGCTA 58.876 47.619 0.00 0.00 40.62 4.26
7002 7062 0.918983 TGGAGGGAAAATCATCCGCT 59.081 50.000 0.00 0.00 40.62 5.52
7003 7063 1.986882 ATGGAGGGAAAATCATCCGC 58.013 50.000 0.00 0.00 40.62 5.54
7004 7064 6.463995 TTTAAATGGAGGGAAAATCATCCG 57.536 37.500 0.00 0.00 40.62 4.18
7011 7071 9.699703 CGTTTCTTATTTTAAATGGAGGGAAAA 57.300 29.630 0.00 0.00 0.00 2.29
7012 7072 8.862085 ACGTTTCTTATTTTAAATGGAGGGAAA 58.138 29.630 0.00 2.15 0.00 3.13
7013 7073 8.411991 ACGTTTCTTATTTTAAATGGAGGGAA 57.588 30.769 0.00 0.00 0.00 3.97
7014 7074 7.886446 AGACGTTTCTTATTTTAAATGGAGGGA 59.114 33.333 0.00 0.00 0.00 4.20
7015 7075 7.968405 CAGACGTTTCTTATTTTAAATGGAGGG 59.032 37.037 0.00 0.00 0.00 4.30
7016 7076 8.726988 TCAGACGTTTCTTATTTTAAATGGAGG 58.273 33.333 0.00 0.00 0.00 4.30
7037 7097 7.065563 AGCAGAATATCACTTTTGTCATCAGAC 59.934 37.037 0.00 0.00 45.19 3.51
7038 7098 7.108194 AGCAGAATATCACTTTTGTCATCAGA 58.892 34.615 0.00 0.00 0.00 3.27
7039 7099 7.317842 AGCAGAATATCACTTTTGTCATCAG 57.682 36.000 0.00 0.00 0.00 2.90
7047 7115 4.018050 ACCTGGGAGCAGAATATCACTTTT 60.018 41.667 0.00 0.00 0.00 2.27
7054 7122 1.216064 TGCACCTGGGAGCAGAATAT 58.784 50.000 11.38 0.00 36.84 1.28
7055 7123 0.991146 TTGCACCTGGGAGCAGAATA 59.009 50.000 14.31 0.00 42.11 1.75
7086 7154 3.003689 ACACTCAAGAATGTTTGCCTTCG 59.996 43.478 0.00 0.00 0.00 3.79
7091 7159 4.044426 GGTGAACACTCAAGAATGTTTGC 58.956 43.478 0.00 0.00 39.13 3.68
7172 7240 4.644498 AGAATTTTTGGGTGCCTGATTTG 58.356 39.130 0.00 0.00 0.00 2.32
7176 7244 5.144100 TCTTAAGAATTTTTGGGTGCCTGA 58.856 37.500 1.68 0.00 0.00 3.86
7192 7260 6.593382 GCTCAGAAGAAGCTCATTTCTTAAGA 59.407 38.462 0.00 0.00 45.00 2.10
7202 7270 3.079578 CCATTTGCTCAGAAGAAGCTCA 58.920 45.455 0.00 0.00 0.00 4.26
7203 7271 3.341823 TCCATTTGCTCAGAAGAAGCTC 58.658 45.455 0.00 0.00 0.00 4.09
7204 7272 3.430042 TCCATTTGCTCAGAAGAAGCT 57.570 42.857 0.00 0.00 0.00 3.74
7205 7273 4.082354 ACATTCCATTTGCTCAGAAGAAGC 60.082 41.667 0.00 0.00 0.00 3.86
7206 7274 5.640189 ACATTCCATTTGCTCAGAAGAAG 57.360 39.130 0.00 0.00 0.00 2.85
7207 7275 7.707624 ATAACATTCCATTTGCTCAGAAGAA 57.292 32.000 0.00 0.00 0.00 2.52
7208 7276 7.707624 AATAACATTCCATTTGCTCAGAAGA 57.292 32.000 0.00 0.00 0.00 2.87
7209 7277 8.248945 AGAAATAACATTCCATTTGCTCAGAAG 58.751 33.333 0.00 0.00 0.00 2.85
7210 7278 8.030692 CAGAAATAACATTCCATTTGCTCAGAA 58.969 33.333 0.00 0.00 0.00 3.02
7211 7279 7.541162 CAGAAATAACATTCCATTTGCTCAGA 58.459 34.615 0.00 0.00 0.00 3.27
7212 7280 6.255020 GCAGAAATAACATTCCATTTGCTCAG 59.745 38.462 0.00 0.00 0.00 3.35
7219 7287 5.895636 TCGTGCAGAAATAACATTCCATT 57.104 34.783 0.00 0.00 0.00 3.16
7239 7307 5.147162 GTTCTACTCCTGTGCAAAATTTCG 58.853 41.667 0.00 0.00 0.00 3.46
7310 7386 1.001706 GGACTTTTTGCTCGGGTGAAC 60.002 52.381 0.00 0.00 0.00 3.18
7317 7393 2.807967 TCAGACATGGACTTTTTGCTCG 59.192 45.455 0.00 0.00 0.00 5.03
7323 7399 4.916041 TCCTCATCAGACATGGACTTTT 57.084 40.909 0.00 0.00 0.00 2.27
7392 7468 9.902684 ACAGAGATTTCTTCATCTGATTGTTAT 57.097 29.630 7.97 0.00 41.35 1.89
7393 7469 9.730705 AACAGAGATTTCTTCATCTGATTGTTA 57.269 29.630 7.97 0.00 41.35 2.41
7394 7470 8.512956 CAACAGAGATTTCTTCATCTGATTGTT 58.487 33.333 7.97 2.40 41.35 2.83
7395 7471 7.881751 TCAACAGAGATTTCTTCATCTGATTGT 59.118 33.333 7.97 0.00 41.35 2.71
7396 7472 8.265165 TCAACAGAGATTTCTTCATCTGATTG 57.735 34.615 7.97 8.38 41.35 2.67
7397 7473 8.859236 TTCAACAGAGATTTCTTCATCTGATT 57.141 30.769 7.97 0.00 41.35 2.57
7398 7474 8.859236 TTTCAACAGAGATTTCTTCATCTGAT 57.141 30.769 7.97 0.00 41.35 2.90
7399 7475 8.681486 TTTTCAACAGAGATTTCTTCATCTGA 57.319 30.769 7.97 0.00 41.35 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.