Multiple sequence alignment - TraesCS1B01G070200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G070200 chr1B 100.000 2579 0 0 1 2579 55337071 55339649 0.000000e+00 4763.0
1 TraesCS1B01G070200 chr3A 96.020 2010 57 13 587 2577 696805041 696807046 0.000000e+00 3247.0
2 TraesCS1B01G070200 chr3A 95.769 2009 66 3 587 2577 696775843 696777850 0.000000e+00 3221.0
3 TraesCS1B01G070200 chr3A 95.672 2010 67 4 587 2577 696848937 696850945 0.000000e+00 3212.0
4 TraesCS1B01G070200 chr3A 95.674 2011 66 4 587 2577 696871717 696873726 0.000000e+00 3212.0
5 TraesCS1B01G070200 chr3A 95.473 2010 71 4 587 2577 696826462 696828470 0.000000e+00 3190.0
6 TraesCS1B01G070200 chr2B 95.620 2009 68 4 588 2577 641594575 641592568 0.000000e+00 3205.0
7 TraesCS1B01G070200 chr4B 95.878 1698 52 2 898 2577 74247071 74245374 0.000000e+00 2732.0
8 TraesCS1B01G070200 chr4B 85.965 114 14 2 2465 2577 29876352 29876464 1.250000e-23 121.0
9 TraesCS1B01G070200 chr4A 93.654 457 24 5 1 455 727403588 727403135 0.000000e+00 678.0
10 TraesCS1B01G070200 chr6D 99.522 209 1 0 1 209 427062205 427062413 5.210000e-102 381.0
11 TraesCS1B01G070200 chr2D 96.226 212 7 1 245 455 261958782 261958571 1.900000e-91 346.0
12 TraesCS1B01G070200 chr2D 96.190 105 4 0 111 215 261958880 261958776 3.410000e-39 172.0
13 TraesCS1B01G070200 chr6A 80.734 109 21 0 2466 2574 53061260 53061152 4.570000e-13 86.1
14 TraesCS1B01G070200 chr7A 75.595 168 29 11 219 379 690893703 690893541 3.560000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G070200 chr1B 55337071 55339649 2578 False 4763 4763 100.000 1 2579 1 chr1B.!!$F1 2578
1 TraesCS1B01G070200 chr3A 696805041 696807046 2005 False 3247 3247 96.020 587 2577 1 chr3A.!!$F2 1990
2 TraesCS1B01G070200 chr3A 696775843 696777850 2007 False 3221 3221 95.769 587 2577 1 chr3A.!!$F1 1990
3 TraesCS1B01G070200 chr3A 696848937 696850945 2008 False 3212 3212 95.672 587 2577 1 chr3A.!!$F4 1990
4 TraesCS1B01G070200 chr3A 696871717 696873726 2009 False 3212 3212 95.674 587 2577 1 chr3A.!!$F5 1990
5 TraesCS1B01G070200 chr3A 696826462 696828470 2008 False 3190 3190 95.473 587 2577 1 chr3A.!!$F3 1990
6 TraesCS1B01G070200 chr2B 641592568 641594575 2007 True 3205 3205 95.620 588 2577 1 chr2B.!!$R1 1989
7 TraesCS1B01G070200 chr4B 74245374 74247071 1697 True 2732 2732 95.878 898 2577 1 chr4B.!!$R1 1679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 548 0.106719 ACCCCCTAACATTCCATGCG 60.107 55.0 0.0 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1836 0.036858 GCTTCCGCTCCTCTCTTTGT 60.037 55.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.595823 GATATTTGTAGGCTAACTGTTACTTGA 57.404 33.333 0.00 0.00 0.00 3.02
27 28 9.953565 ATATTTGTAGGCTAACTGTTACTTGAA 57.046 29.630 0.00 0.00 0.00 2.69
28 29 8.685838 ATTTGTAGGCTAACTGTTACTTGAAA 57.314 30.769 0.00 0.00 0.00 2.69
29 30 7.724305 TTGTAGGCTAACTGTTACTTGAAAG 57.276 36.000 0.00 0.00 0.00 2.62
30 31 6.228258 TGTAGGCTAACTGTTACTTGAAAGG 58.772 40.000 0.00 0.00 0.00 3.11
31 32 4.072839 AGGCTAACTGTTACTTGAAAGGC 58.927 43.478 0.00 0.00 0.00 4.35
32 33 3.818773 GGCTAACTGTTACTTGAAAGGCA 59.181 43.478 0.00 0.00 0.00 4.75
33 34 4.459337 GGCTAACTGTTACTTGAAAGGCAT 59.541 41.667 0.00 0.00 0.00 4.40
34 35 5.393962 GCTAACTGTTACTTGAAAGGCATG 58.606 41.667 0.00 0.00 0.00 4.06
35 36 3.923017 ACTGTTACTTGAAAGGCATGC 57.077 42.857 9.90 9.90 0.00 4.06
36 37 3.490348 ACTGTTACTTGAAAGGCATGCT 58.510 40.909 18.92 0.00 0.00 3.79
37 38 4.651778 ACTGTTACTTGAAAGGCATGCTA 58.348 39.130 18.92 0.00 0.00 3.49
38 39 5.256474 ACTGTTACTTGAAAGGCATGCTAT 58.744 37.500 18.92 3.63 0.00 2.97
39 40 5.711976 ACTGTTACTTGAAAGGCATGCTATT 59.288 36.000 18.92 12.77 0.00 1.73
40 41 5.953183 TGTTACTTGAAAGGCATGCTATTG 58.047 37.500 18.92 4.28 0.00 1.90
41 42 5.476599 TGTTACTTGAAAGGCATGCTATTGT 59.523 36.000 18.92 9.54 0.00 2.71
42 43 6.015519 TGTTACTTGAAAGGCATGCTATTGTT 60.016 34.615 18.92 4.68 0.00 2.83
43 44 4.813027 ACTTGAAAGGCATGCTATTGTTG 58.187 39.130 18.92 6.42 0.00 3.33
44 45 4.281688 ACTTGAAAGGCATGCTATTGTTGT 59.718 37.500 18.92 7.05 0.00 3.32
45 46 5.476599 ACTTGAAAGGCATGCTATTGTTGTA 59.523 36.000 18.92 0.00 0.00 2.41
46 47 5.309323 TGAAAGGCATGCTATTGTTGTAC 57.691 39.130 18.92 0.00 0.00 2.90
47 48 5.009631 TGAAAGGCATGCTATTGTTGTACT 58.990 37.500 18.92 0.00 0.00 2.73
48 49 5.476599 TGAAAGGCATGCTATTGTTGTACTT 59.523 36.000 18.92 5.18 0.00 2.24
49 50 5.982890 AAGGCATGCTATTGTTGTACTTT 57.017 34.783 18.92 0.00 0.00 2.66
50 51 5.567138 AGGCATGCTATTGTTGTACTTTC 57.433 39.130 18.92 0.00 0.00 2.62
51 52 5.256474 AGGCATGCTATTGTTGTACTTTCT 58.744 37.500 18.92 0.00 0.00 2.52
52 53 5.355350 AGGCATGCTATTGTTGTACTTTCTC 59.645 40.000 18.92 0.00 0.00 2.87
53 54 5.355350 GGCATGCTATTGTTGTACTTTCTCT 59.645 40.000 18.92 0.00 0.00 3.10
54 55 6.127897 GGCATGCTATTGTTGTACTTTCTCTT 60.128 38.462 18.92 0.00 0.00 2.85
55 56 7.065803 GGCATGCTATTGTTGTACTTTCTCTTA 59.934 37.037 18.92 0.00 0.00 2.10
56 57 8.119226 GCATGCTATTGTTGTACTTTCTCTTAG 58.881 37.037 11.37 0.00 0.00 2.18
57 58 9.155975 CATGCTATTGTTGTACTTTCTCTTAGT 57.844 33.333 0.00 0.00 0.00 2.24
58 59 9.726438 ATGCTATTGTTGTACTTTCTCTTAGTT 57.274 29.630 0.00 0.00 0.00 2.24
59 60 8.988934 TGCTATTGTTGTACTTTCTCTTAGTTG 58.011 33.333 0.00 0.00 0.00 3.16
60 61 8.443937 GCTATTGTTGTACTTTCTCTTAGTTGG 58.556 37.037 0.00 0.00 0.00 3.77
61 62 9.706691 CTATTGTTGTACTTTCTCTTAGTTGGA 57.293 33.333 0.00 0.00 0.00 3.53
63 64 8.974060 TTGTTGTACTTTCTCTTAGTTGGATT 57.026 30.769 0.00 0.00 0.00 3.01
65 66 9.706691 TGTTGTACTTTCTCTTAGTTGGATTAG 57.293 33.333 0.00 0.00 0.00 1.73
66 67 9.924650 GTTGTACTTTCTCTTAGTTGGATTAGA 57.075 33.333 0.00 0.00 0.00 2.10
74 75 8.792830 TCTCTTAGTTGGATTAGATTTGTTGG 57.207 34.615 0.00 0.00 0.00 3.77
75 76 8.602424 TCTCTTAGTTGGATTAGATTTGTTGGA 58.398 33.333 0.00 0.00 0.00 3.53
76 77 9.401058 CTCTTAGTTGGATTAGATTTGTTGGAT 57.599 33.333 0.00 0.00 0.00 3.41
77 78 9.396022 TCTTAGTTGGATTAGATTTGTTGGATC 57.604 33.333 0.00 0.00 0.00 3.36
78 79 9.401058 CTTAGTTGGATTAGATTTGTTGGATCT 57.599 33.333 0.00 0.00 37.59 2.75
79 80 9.753674 TTAGTTGGATTAGATTTGTTGGATCTT 57.246 29.630 0.00 0.00 35.56 2.40
80 81 8.286191 AGTTGGATTAGATTTGTTGGATCTTC 57.714 34.615 0.00 0.00 35.56 2.87
81 82 7.340487 AGTTGGATTAGATTTGTTGGATCTTCC 59.660 37.037 0.00 0.00 35.56 3.46
82 83 6.730447 TGGATTAGATTTGTTGGATCTTCCA 58.270 36.000 4.29 4.29 46.61 3.53
97 98 8.801882 TGGATCTTCCAACGTTTATTCTATTT 57.198 30.769 0.00 0.00 45.00 1.40
98 99 8.673711 TGGATCTTCCAACGTTTATTCTATTTG 58.326 33.333 0.00 0.00 45.00 2.32
99 100 7.644157 GGATCTTCCAACGTTTATTCTATTTGC 59.356 37.037 0.00 0.00 36.28 3.68
100 101 7.441890 TCTTCCAACGTTTATTCTATTTGCA 57.558 32.000 0.00 0.00 0.00 4.08
101 102 8.050778 TCTTCCAACGTTTATTCTATTTGCAT 57.949 30.769 0.00 0.00 0.00 3.96
102 103 9.168451 TCTTCCAACGTTTATTCTATTTGCATA 57.832 29.630 0.00 0.00 0.00 3.14
103 104 9.950680 CTTCCAACGTTTATTCTATTTGCATAT 57.049 29.630 0.00 0.00 0.00 1.78
104 105 9.729023 TTCCAACGTTTATTCTATTTGCATATG 57.271 29.630 0.00 0.00 0.00 1.78
105 106 8.898761 TCCAACGTTTATTCTATTTGCATATGT 58.101 29.630 0.00 0.00 0.00 2.29
106 107 8.957028 CCAACGTTTATTCTATTTGCATATGTG 58.043 33.333 0.00 0.00 0.00 3.21
118 119 3.648339 GCATATGTGCCAATCGGATTT 57.352 42.857 2.47 0.00 45.76 2.17
119 120 4.764679 GCATATGTGCCAATCGGATTTA 57.235 40.909 2.47 0.00 45.76 1.40
120 121 5.119931 GCATATGTGCCAATCGGATTTAA 57.880 39.130 2.47 0.00 45.76 1.52
121 122 5.527951 GCATATGTGCCAATCGGATTTAAA 58.472 37.500 2.47 0.00 45.76 1.52
122 123 5.982516 GCATATGTGCCAATCGGATTTAAAA 59.017 36.000 2.47 0.00 45.76 1.52
123 124 6.478344 GCATATGTGCCAATCGGATTTAAAAA 59.522 34.615 2.47 0.00 45.76 1.94
124 125 7.306749 GCATATGTGCCAATCGGATTTAAAAAG 60.307 37.037 2.47 0.00 45.76 2.27
125 126 5.713792 TGTGCCAATCGGATTTAAAAAGA 57.286 34.783 0.00 0.00 0.00 2.52
126 127 5.708948 TGTGCCAATCGGATTTAAAAAGAG 58.291 37.500 0.00 0.00 0.00 2.85
127 128 5.242838 TGTGCCAATCGGATTTAAAAAGAGT 59.757 36.000 0.00 0.00 0.00 3.24
128 129 5.800438 GTGCCAATCGGATTTAAAAAGAGTC 59.200 40.000 0.00 0.00 0.00 3.36
129 130 5.105917 TGCCAATCGGATTTAAAAAGAGTCC 60.106 40.000 0.00 0.00 0.00 3.85
130 131 5.678871 GCCAATCGGATTTAAAAAGAGTCCC 60.679 44.000 0.00 0.00 0.00 4.46
131 132 5.448632 CCAATCGGATTTAAAAAGAGTCCCG 60.449 44.000 0.00 0.00 37.29 5.14
132 133 3.004862 TCGGATTTAAAAAGAGTCCCGC 58.995 45.455 0.00 0.00 36.06 6.13
133 134 3.007635 CGGATTTAAAAAGAGTCCCGCT 58.992 45.455 0.00 0.00 0.00 5.52
134 135 3.439129 CGGATTTAAAAAGAGTCCCGCTT 59.561 43.478 0.00 0.00 0.00 4.68
135 136 4.436986 CGGATTTAAAAAGAGTCCCGCTTC 60.437 45.833 0.00 0.00 0.00 3.86
136 137 4.436986 GGATTTAAAAAGAGTCCCGCTTCG 60.437 45.833 0.00 0.00 0.00 3.79
138 139 0.108019 AAAAAGAGTCCCGCTTCGGT 59.892 50.000 4.47 0.00 46.80 4.69
139 140 0.971386 AAAAGAGTCCCGCTTCGGTA 59.029 50.000 4.47 0.00 46.80 4.02
140 141 0.245813 AAAGAGTCCCGCTTCGGTAC 59.754 55.000 4.47 0.00 46.80 3.34
141 142 0.896940 AAGAGTCCCGCTTCGGTACA 60.897 55.000 3.93 0.00 46.80 2.90
142 143 0.896940 AGAGTCCCGCTTCGGTACAA 60.897 55.000 3.93 0.00 46.80 2.41
143 144 0.175073 GAGTCCCGCTTCGGTACAAT 59.825 55.000 3.93 0.00 46.80 2.71
144 145 1.406539 GAGTCCCGCTTCGGTACAATA 59.593 52.381 3.93 0.00 46.80 1.90
145 146 2.035576 GAGTCCCGCTTCGGTACAATAT 59.964 50.000 3.93 0.00 46.80 1.28
146 147 2.132762 GTCCCGCTTCGGTACAATATG 58.867 52.381 4.47 0.00 46.80 1.78
147 148 1.069513 TCCCGCTTCGGTACAATATGG 59.930 52.381 4.47 0.00 46.80 2.74
148 149 1.069513 CCCGCTTCGGTACAATATGGA 59.930 52.381 4.47 0.00 46.80 3.41
149 150 2.132762 CCGCTTCGGTACAATATGGAC 58.867 52.381 0.00 0.00 42.73 4.02
161 162 7.865706 GTACAATATGGACCTTTGACAGATT 57.134 36.000 8.71 0.00 0.00 2.40
162 163 8.958119 GTACAATATGGACCTTTGACAGATTA 57.042 34.615 8.71 0.00 0.00 1.75
163 164 9.561069 GTACAATATGGACCTTTGACAGATTAT 57.439 33.333 8.71 0.00 0.00 1.28
165 166 9.561069 ACAATATGGACCTTTGACAGATTATAC 57.439 33.333 8.71 0.00 0.00 1.47
166 167 8.712363 CAATATGGACCTTTGACAGATTATACG 58.288 37.037 0.00 0.00 0.00 3.06
167 168 5.018539 TGGACCTTTGACAGATTATACGG 57.981 43.478 0.00 0.00 0.00 4.02
168 169 4.141801 TGGACCTTTGACAGATTATACGGG 60.142 45.833 0.00 0.00 0.00 5.28
169 170 4.141779 GGACCTTTGACAGATTATACGGGT 60.142 45.833 0.00 0.00 0.00 5.28
170 171 4.766375 ACCTTTGACAGATTATACGGGTG 58.234 43.478 0.00 0.00 0.00 4.61
171 172 3.560068 CCTTTGACAGATTATACGGGTGC 59.440 47.826 0.00 0.00 0.00 5.01
172 173 2.502213 TGACAGATTATACGGGTGCG 57.498 50.000 0.00 0.00 0.00 5.34
173 174 1.067974 TGACAGATTATACGGGTGCGG 59.932 52.381 0.00 0.00 0.00 5.69
174 175 1.338973 GACAGATTATACGGGTGCGGA 59.661 52.381 0.00 0.00 0.00 5.54
175 176 1.758280 ACAGATTATACGGGTGCGGAA 59.242 47.619 0.00 0.00 0.00 4.30
176 177 2.168936 ACAGATTATACGGGTGCGGAAA 59.831 45.455 0.00 0.00 0.00 3.13
177 178 2.800544 CAGATTATACGGGTGCGGAAAG 59.199 50.000 0.00 0.00 0.00 2.62
178 179 2.140717 GATTATACGGGTGCGGAAAGG 58.859 52.381 0.00 0.00 0.00 3.11
179 180 0.462403 TTATACGGGTGCGGAAAGGC 60.462 55.000 0.00 0.00 0.00 4.35
180 181 2.632136 TATACGGGTGCGGAAAGGCG 62.632 60.000 0.00 0.00 35.06 5.52
189 190 4.193334 GGAAAGGCGGCGGCAATC 62.193 66.667 34.87 28.51 42.47 2.67
190 191 4.536687 GAAAGGCGGCGGCAATCG 62.537 66.667 34.87 0.00 42.47 3.34
195 196 4.811761 GCGGCGGCAATCGAACAC 62.812 66.667 9.78 0.00 42.43 3.32
196 197 3.418913 CGGCGGCAATCGAACACA 61.419 61.111 10.53 0.00 42.43 3.72
197 198 2.950673 GGCGGCAATCGAACACAA 59.049 55.556 3.07 0.00 42.43 3.33
198 199 1.154225 GGCGGCAATCGAACACAAG 60.154 57.895 3.07 0.00 42.43 3.16
199 200 1.573829 GGCGGCAATCGAACACAAGA 61.574 55.000 3.07 0.00 42.43 3.02
200 201 0.452784 GCGGCAATCGAACACAAGAC 60.453 55.000 0.00 0.00 42.43 3.01
201 202 0.165944 CGGCAATCGAACACAAGACC 59.834 55.000 0.00 0.00 42.43 3.85
202 203 1.523758 GGCAATCGAACACAAGACCT 58.476 50.000 0.00 0.00 0.00 3.85
203 204 1.464997 GGCAATCGAACACAAGACCTC 59.535 52.381 0.00 0.00 0.00 3.85
204 205 1.464997 GCAATCGAACACAAGACCTCC 59.535 52.381 0.00 0.00 0.00 4.30
205 206 2.872038 GCAATCGAACACAAGACCTCCT 60.872 50.000 0.00 0.00 0.00 3.69
206 207 2.738846 CAATCGAACACAAGACCTCCTG 59.261 50.000 0.00 0.00 0.00 3.86
207 208 0.679505 TCGAACACAAGACCTCCTGG 59.320 55.000 0.00 0.00 39.83 4.45
219 220 3.425162 ACCTCCTGGTCTCAATCAAAC 57.575 47.619 0.00 0.00 44.78 2.93
220 221 2.711009 ACCTCCTGGTCTCAATCAAACA 59.289 45.455 0.00 0.00 44.78 2.83
221 222 3.138283 ACCTCCTGGTCTCAATCAAACAA 59.862 43.478 0.00 0.00 44.78 2.83
222 223 3.755378 CCTCCTGGTCTCAATCAAACAAG 59.245 47.826 0.00 0.00 0.00 3.16
223 224 3.149196 TCCTGGTCTCAATCAAACAAGC 58.851 45.455 0.00 0.00 0.00 4.01
224 225 2.229784 CCTGGTCTCAATCAAACAAGCC 59.770 50.000 0.00 0.00 0.00 4.35
225 226 1.879380 TGGTCTCAATCAAACAAGCCG 59.121 47.619 0.00 0.00 0.00 5.52
226 227 2.151202 GGTCTCAATCAAACAAGCCGA 58.849 47.619 0.00 0.00 0.00 5.54
227 228 2.552315 GGTCTCAATCAAACAAGCCGAA 59.448 45.455 0.00 0.00 0.00 4.30
228 229 3.555518 GTCTCAATCAAACAAGCCGAAC 58.444 45.455 0.00 0.00 0.00 3.95
229 230 2.552315 TCTCAATCAAACAAGCCGAACC 59.448 45.455 0.00 0.00 0.00 3.62
230 231 2.293122 CTCAATCAAACAAGCCGAACCA 59.707 45.455 0.00 0.00 0.00 3.67
231 232 2.034053 TCAATCAAACAAGCCGAACCAC 59.966 45.455 0.00 0.00 0.00 4.16
232 233 1.981256 ATCAAACAAGCCGAACCACT 58.019 45.000 0.00 0.00 0.00 4.00
233 234 2.623878 TCAAACAAGCCGAACCACTA 57.376 45.000 0.00 0.00 0.00 2.74
234 235 2.489971 TCAAACAAGCCGAACCACTAG 58.510 47.619 0.00 0.00 0.00 2.57
235 236 2.103432 TCAAACAAGCCGAACCACTAGA 59.897 45.455 0.00 0.00 0.00 2.43
236 237 2.165319 AACAAGCCGAACCACTAGAC 57.835 50.000 0.00 0.00 0.00 2.59
237 238 1.339097 ACAAGCCGAACCACTAGACT 58.661 50.000 0.00 0.00 0.00 3.24
238 239 2.522185 ACAAGCCGAACCACTAGACTA 58.478 47.619 0.00 0.00 0.00 2.59
239 240 2.895404 ACAAGCCGAACCACTAGACTAA 59.105 45.455 0.00 0.00 0.00 2.24
240 241 3.056749 ACAAGCCGAACCACTAGACTAAG 60.057 47.826 0.00 0.00 0.00 2.18
241 242 2.805194 AGCCGAACCACTAGACTAAGT 58.195 47.619 0.00 0.00 0.00 2.24
242 243 2.754002 AGCCGAACCACTAGACTAAGTC 59.246 50.000 0.00 0.00 0.00 3.01
243 244 2.490903 GCCGAACCACTAGACTAAGTCA 59.509 50.000 0.00 0.00 34.60 3.41
244 245 3.130693 GCCGAACCACTAGACTAAGTCAT 59.869 47.826 0.00 0.00 34.60 3.06
245 246 4.734108 GCCGAACCACTAGACTAAGTCATC 60.734 50.000 0.00 0.00 34.60 2.92
246 247 4.641094 CCGAACCACTAGACTAAGTCATCT 59.359 45.833 0.00 0.00 34.60 2.90
247 248 5.220892 CCGAACCACTAGACTAAGTCATCTC 60.221 48.000 0.00 0.00 34.60 2.75
248 249 5.587043 CGAACCACTAGACTAAGTCATCTCT 59.413 44.000 0.00 0.00 34.60 3.10
249 250 6.762187 CGAACCACTAGACTAAGTCATCTCTA 59.238 42.308 0.00 0.00 34.60 2.43
250 251 7.442969 CGAACCACTAGACTAAGTCATCTCTAT 59.557 40.741 0.00 0.00 34.60 1.98
251 252 9.127277 GAACCACTAGACTAAGTCATCTCTATT 57.873 37.037 0.00 0.00 34.60 1.73
252 253 8.458573 ACCACTAGACTAAGTCATCTCTATTG 57.541 38.462 0.00 0.00 34.60 1.90
253 254 8.275758 ACCACTAGACTAAGTCATCTCTATTGA 58.724 37.037 0.00 0.00 34.60 2.57
254 255 8.564574 CCACTAGACTAAGTCATCTCTATTGAC 58.435 40.741 0.00 0.00 43.05 3.18
255 256 9.114952 CACTAGACTAAGTCATCTCTATTGACA 57.885 37.037 0.00 0.00 44.73 3.58
256 257 9.688091 ACTAGACTAAGTCATCTCTATTGACAA 57.312 33.333 0.00 0.00 44.73 3.18
261 262 9.757227 ACTAAGTCATCTCTATTGACAATTAGC 57.243 33.333 5.89 0.00 44.73 3.09
262 263 9.755804 CTAAGTCATCTCTATTGACAATTAGCA 57.244 33.333 5.89 0.00 44.73 3.49
263 264 8.659925 AAGTCATCTCTATTGACAATTAGCAG 57.340 34.615 5.89 0.00 44.73 4.24
264 265 6.705381 AGTCATCTCTATTGACAATTAGCAGC 59.295 38.462 5.89 0.00 44.73 5.25
265 266 6.481313 GTCATCTCTATTGACAATTAGCAGCA 59.519 38.462 5.89 0.00 42.43 4.41
266 267 6.481313 TCATCTCTATTGACAATTAGCAGCAC 59.519 38.462 5.89 0.00 0.00 4.40
267 268 4.805719 TCTCTATTGACAATTAGCAGCACG 59.194 41.667 5.89 0.00 0.00 5.34
268 269 3.871006 TCTATTGACAATTAGCAGCACGG 59.129 43.478 5.89 0.00 0.00 4.94
269 270 2.177394 TTGACAATTAGCAGCACGGA 57.823 45.000 0.00 0.00 0.00 4.69
270 271 2.177394 TGACAATTAGCAGCACGGAA 57.823 45.000 0.00 0.00 0.00 4.30
271 272 2.710377 TGACAATTAGCAGCACGGAAT 58.290 42.857 0.00 0.00 0.00 3.01
272 273 3.867857 TGACAATTAGCAGCACGGAATA 58.132 40.909 0.00 0.00 0.00 1.75
273 274 4.450976 TGACAATTAGCAGCACGGAATAT 58.549 39.130 0.00 0.00 0.00 1.28
274 275 4.881273 TGACAATTAGCAGCACGGAATATT 59.119 37.500 0.00 0.00 0.00 1.28
275 276 6.052360 TGACAATTAGCAGCACGGAATATTA 58.948 36.000 0.00 0.00 0.00 0.98
276 277 6.540551 TGACAATTAGCAGCACGGAATATTAA 59.459 34.615 0.00 0.00 0.00 1.40
277 278 6.959361 ACAATTAGCAGCACGGAATATTAAG 58.041 36.000 0.00 0.00 0.00 1.85
278 279 6.765989 ACAATTAGCAGCACGGAATATTAAGA 59.234 34.615 0.00 0.00 0.00 2.10
279 280 7.282224 ACAATTAGCAGCACGGAATATTAAGAA 59.718 33.333 0.00 0.00 0.00 2.52
280 281 6.598753 TTAGCAGCACGGAATATTAAGAAC 57.401 37.500 0.00 0.00 0.00 3.01
281 282 4.770795 AGCAGCACGGAATATTAAGAACT 58.229 39.130 0.00 0.00 0.00 3.01
282 283 5.914033 AGCAGCACGGAATATTAAGAACTA 58.086 37.500 0.00 0.00 0.00 2.24
283 284 6.525629 AGCAGCACGGAATATTAAGAACTAT 58.474 36.000 0.00 0.00 0.00 2.12
284 285 6.425114 AGCAGCACGGAATATTAAGAACTATG 59.575 38.462 0.00 0.00 0.00 2.23
285 286 6.593978 CAGCACGGAATATTAAGAACTATGC 58.406 40.000 0.00 0.00 0.00 3.14
286 287 5.405571 AGCACGGAATATTAAGAACTATGCG 59.594 40.000 0.00 0.00 33.51 4.73
287 288 5.404366 GCACGGAATATTAAGAACTATGCGA 59.596 40.000 0.00 0.00 0.00 5.10
288 289 6.073980 GCACGGAATATTAAGAACTATGCGAA 60.074 38.462 0.00 0.00 0.00 4.70
289 290 7.502339 CACGGAATATTAAGAACTATGCGAAG 58.498 38.462 0.00 0.00 0.00 3.79
331 332 6.952935 TTTTCAAAATTTGTACGCAGTTGT 57.047 29.167 5.56 0.00 37.78 3.32
332 333 6.952935 TTTCAAAATTTGTACGCAGTTGTT 57.047 29.167 5.56 0.00 37.78 2.83
333 334 6.952935 TTCAAAATTTGTACGCAGTTGTTT 57.047 29.167 5.56 0.00 37.78 2.83
334 335 6.952935 TCAAAATTTGTACGCAGTTGTTTT 57.047 29.167 5.56 0.00 37.78 2.43
335 336 8.462143 TTCAAAATTTGTACGCAGTTGTTTTA 57.538 26.923 5.56 0.00 37.78 1.52
336 337 8.462143 TCAAAATTTGTACGCAGTTGTTTTAA 57.538 26.923 5.56 0.00 37.78 1.52
337 338 8.922676 TCAAAATTTGTACGCAGTTGTTTTAAA 58.077 25.926 5.56 0.00 37.78 1.52
338 339 9.695884 CAAAATTTGTACGCAGTTGTTTTAAAT 57.304 25.926 0.00 0.00 37.78 1.40
339 340 9.695884 AAAATTTGTACGCAGTTGTTTTAAATG 57.304 25.926 0.00 0.00 37.78 2.32
340 341 5.874892 TTGTACGCAGTTGTTTTAAATGC 57.125 34.783 2.37 2.37 37.78 3.56
341 342 4.921547 TGTACGCAGTTGTTTTAAATGCA 58.078 34.783 11.73 0.00 37.78 3.96
342 343 5.340803 TGTACGCAGTTGTTTTAAATGCAA 58.659 33.333 11.73 6.58 37.78 4.08
343 344 5.805486 TGTACGCAGTTGTTTTAAATGCAAA 59.195 32.000 11.73 0.00 37.78 3.68
344 345 5.137524 ACGCAGTTGTTTTAAATGCAAAC 57.862 34.783 11.73 0.00 37.78 2.93
345 346 4.627467 ACGCAGTTGTTTTAAATGCAAACA 59.373 33.333 11.73 0.00 37.78 2.83
346 347 5.293079 ACGCAGTTGTTTTAAATGCAAACAT 59.707 32.000 11.73 0.00 42.34 2.71
347 348 6.183360 ACGCAGTTGTTTTAAATGCAAACATT 60.183 30.769 11.73 0.00 44.42 2.71
362 363 9.635520 AATGCAAACATTTTTCAAAATTGTGAA 57.364 22.222 6.98 6.98 44.21 3.18
363 364 9.635520 ATGCAAACATTTTTCAAAATTGTGAAA 57.364 22.222 18.05 18.05 43.92 2.69
374 375 9.604626 TTTCAAAATTGTGAAAACATTGAACAC 57.395 25.926 19.37 0.00 42.94 3.32
375 376 8.315391 TCAAAATTGTGAAAACATTGAACACA 57.685 26.923 0.00 0.00 39.22 3.72
381 382 7.895975 TGTGAAAACATTGAACACAATTTGA 57.104 28.000 2.79 0.00 38.28 2.69
382 383 8.315391 TGTGAAAACATTGAACACAATTTGAA 57.685 26.923 2.79 0.00 38.28 2.69
383 384 8.777413 TGTGAAAACATTGAACACAATTTGAAA 58.223 25.926 2.79 0.00 38.28 2.69
384 385 9.771915 GTGAAAACATTGAACACAATTTGAAAT 57.228 25.926 2.79 0.00 32.76 2.17
388 389 9.991388 AAACATTGAACACAATTTGAAATTCTG 57.009 25.926 2.79 2.31 32.76 3.02
389 390 8.945481 ACATTGAACACAATTTGAAATTCTGA 57.055 26.923 11.91 0.00 32.76 3.27
390 391 9.550406 ACATTGAACACAATTTGAAATTCTGAT 57.450 25.926 11.91 1.26 32.76 2.90
392 393 9.767228 ATTGAACACAATTTGAAATTCTGATCA 57.233 25.926 12.36 12.36 31.23 2.92
393 394 9.597170 TTGAACACAATTTGAAATTCTGATCAA 57.403 25.926 19.57 19.57 33.93 2.57
394 395 9.597170 TGAACACAATTTGAAATTCTGATCAAA 57.403 25.926 13.46 7.22 46.23 2.69
420 421 8.839310 TTTTCAAAATGAGAACAAAAGTTGGA 57.161 26.923 0.00 0.00 34.12 3.53
421 422 8.839310 TTTCAAAATGAGAACAAAAGTTGGAA 57.161 26.923 0.00 0.00 34.12 3.53
422 423 9.447157 TTTCAAAATGAGAACAAAAGTTGGAAT 57.553 25.926 0.00 0.00 34.12 3.01
429 430 9.696917 ATGAGAACAAAAGTTGGAATAATGAAC 57.303 29.630 0.00 0.00 34.12 3.18
430 431 8.690884 TGAGAACAAAAGTTGGAATAATGAACA 58.309 29.630 0.00 0.00 34.12 3.18
431 432 9.696917 GAGAACAAAAGTTGGAATAATGAACAT 57.303 29.630 0.00 0.00 34.12 2.71
458 459 7.979115 TTTTAGAACACGAACAAAATTCCTG 57.021 32.000 0.00 0.00 0.00 3.86
459 460 6.928979 TTAGAACACGAACAAAATTCCTGA 57.071 33.333 0.00 0.00 0.00 3.86
460 461 5.828299 AGAACACGAACAAAATTCCTGAA 57.172 34.783 0.00 0.00 0.00 3.02
461 462 5.821204 AGAACACGAACAAAATTCCTGAAG 58.179 37.500 0.00 0.00 0.00 3.02
462 463 5.357032 AGAACACGAACAAAATTCCTGAAGT 59.643 36.000 0.00 0.00 0.00 3.01
463 464 5.576447 ACACGAACAAAATTCCTGAAGTT 57.424 34.783 0.00 0.00 0.00 2.66
464 465 5.578776 ACACGAACAAAATTCCTGAAGTTC 58.421 37.500 0.00 0.00 33.82 3.01
465 466 5.124776 ACACGAACAAAATTCCTGAAGTTCA 59.875 36.000 5.25 5.25 36.16 3.18
466 467 6.183360 ACACGAACAAAATTCCTGAAGTTCAT 60.183 34.615 5.91 0.00 36.16 2.57
467 468 7.012894 ACACGAACAAAATTCCTGAAGTTCATA 59.987 33.333 5.91 0.00 36.16 2.15
468 469 7.535258 CACGAACAAAATTCCTGAAGTTCATAG 59.465 37.037 5.91 1.33 36.16 2.23
469 470 7.023575 CGAACAAAATTCCTGAAGTTCATAGG 58.976 38.462 5.91 5.41 36.16 2.57
470 471 7.094805 CGAACAAAATTCCTGAAGTTCATAGGA 60.095 37.037 5.91 7.88 38.78 2.94
474 475 4.908601 TTCCTGAAGTTCATAGGAAGCA 57.091 40.909 18.15 2.34 43.64 3.91
475 476 4.908601 TCCTGAAGTTCATAGGAAGCAA 57.091 40.909 5.91 0.00 37.66 3.91
476 477 4.579869 TCCTGAAGTTCATAGGAAGCAAC 58.420 43.478 5.91 0.00 37.66 4.17
477 478 3.691609 CCTGAAGTTCATAGGAAGCAACC 59.308 47.826 5.91 0.00 32.62 3.77
478 479 4.566488 CCTGAAGTTCATAGGAAGCAACCT 60.566 45.833 5.91 6.90 43.32 3.50
479 480 4.326826 TGAAGTTCATAGGAAGCAACCTG 58.673 43.478 0.08 0.00 40.81 4.00
480 481 2.716217 AGTTCATAGGAAGCAACCTGC 58.284 47.619 11.19 0.00 45.46 4.85
489 490 4.181051 GCAACCTGCAGTCCCTTT 57.819 55.556 13.81 0.00 44.26 3.11
490 491 1.662044 GCAACCTGCAGTCCCTTTG 59.338 57.895 13.81 8.63 44.26 2.77
491 492 1.109323 GCAACCTGCAGTCCCTTTGT 61.109 55.000 13.81 0.00 44.26 2.83
492 493 1.817740 GCAACCTGCAGTCCCTTTGTA 60.818 52.381 13.81 0.00 44.26 2.41
493 494 2.154462 CAACCTGCAGTCCCTTTGTAG 58.846 52.381 13.81 0.00 0.00 2.74
494 495 3.558674 CCTGCAGTCCCTTTGTAGG 57.441 57.895 13.81 0.00 41.08 3.18
495 496 0.693049 CCTGCAGTCCCTTTGTAGGT 59.307 55.000 13.81 0.00 41.72 3.08
496 497 1.611673 CCTGCAGTCCCTTTGTAGGTG 60.612 57.143 13.81 0.00 41.72 4.00
497 498 0.400213 TGCAGTCCCTTTGTAGGTGG 59.600 55.000 0.00 0.00 40.19 4.61
498 499 0.690762 GCAGTCCCTTTGTAGGTGGA 59.309 55.000 0.00 0.00 40.19 4.02
499 500 1.282157 GCAGTCCCTTTGTAGGTGGAT 59.718 52.381 0.00 0.00 40.19 3.41
500 501 2.681097 GCAGTCCCTTTGTAGGTGGATC 60.681 54.545 0.00 0.00 40.19 3.36
501 502 2.840651 CAGTCCCTTTGTAGGTGGATCT 59.159 50.000 0.00 0.00 40.19 2.75
502 503 2.840651 AGTCCCTTTGTAGGTGGATCTG 59.159 50.000 0.00 0.00 40.19 2.90
503 504 2.838202 GTCCCTTTGTAGGTGGATCTGA 59.162 50.000 0.00 0.00 40.19 3.27
504 505 3.263425 GTCCCTTTGTAGGTGGATCTGAA 59.737 47.826 0.00 0.00 40.19 3.02
505 506 3.913799 TCCCTTTGTAGGTGGATCTGAAA 59.086 43.478 0.00 0.00 40.19 2.69
506 507 4.352595 TCCCTTTGTAGGTGGATCTGAAAA 59.647 41.667 0.00 0.00 40.19 2.29
507 508 5.076873 CCCTTTGTAGGTGGATCTGAAAAA 58.923 41.667 0.00 0.00 40.19 1.94
532 533 7.536895 ACGTTTTGTTTTTACATAAAACCCC 57.463 32.000 9.78 0.00 38.91 4.95
533 534 6.538021 ACGTTTTGTTTTTACATAAAACCCCC 59.462 34.615 9.78 0.00 38.91 5.40
534 535 6.762187 CGTTTTGTTTTTACATAAAACCCCCT 59.238 34.615 9.78 0.00 38.91 4.79
535 536 7.924947 CGTTTTGTTTTTACATAAAACCCCCTA 59.075 33.333 9.78 0.00 38.91 3.53
536 537 9.610705 GTTTTGTTTTTACATAAAACCCCCTAA 57.389 29.630 9.78 0.00 38.88 2.69
537 538 9.610705 TTTTGTTTTTACATAAAACCCCCTAAC 57.389 29.630 9.78 0.00 38.88 2.34
538 539 7.909485 TGTTTTTACATAAAACCCCCTAACA 57.091 32.000 9.78 0.00 38.88 2.41
539 540 8.493787 TGTTTTTACATAAAACCCCCTAACAT 57.506 30.769 9.78 0.00 38.88 2.71
540 541 8.935741 TGTTTTTACATAAAACCCCCTAACATT 58.064 29.630 9.78 0.00 38.88 2.71
541 542 9.426837 GTTTTTACATAAAACCCCCTAACATTC 57.573 33.333 0.00 0.00 35.14 2.67
542 543 7.721409 TTTACATAAAACCCCCTAACATTCC 57.279 36.000 0.00 0.00 0.00 3.01
543 544 5.278127 ACATAAAACCCCCTAACATTCCA 57.722 39.130 0.00 0.00 0.00 3.53
544 545 5.849140 ACATAAAACCCCCTAACATTCCAT 58.151 37.500 0.00 0.00 0.00 3.41
545 546 5.660864 ACATAAAACCCCCTAACATTCCATG 59.339 40.000 0.00 0.00 0.00 3.66
546 547 2.159179 AACCCCCTAACATTCCATGC 57.841 50.000 0.00 0.00 0.00 4.06
547 548 0.106719 ACCCCCTAACATTCCATGCG 60.107 55.000 0.00 0.00 0.00 4.73
548 549 1.455383 CCCCCTAACATTCCATGCGC 61.455 60.000 0.00 0.00 0.00 6.09
549 550 0.751277 CCCCTAACATTCCATGCGCA 60.751 55.000 14.96 14.96 0.00 6.09
550 551 0.664761 CCCTAACATTCCATGCGCAG 59.335 55.000 18.32 8.11 0.00 5.18
551 552 1.382522 CCTAACATTCCATGCGCAGT 58.617 50.000 18.32 3.63 0.00 4.40
552 553 1.064505 CCTAACATTCCATGCGCAGTG 59.935 52.381 18.32 14.09 0.00 3.66
553 554 0.451383 TAACATTCCATGCGCAGTGC 59.549 50.000 18.32 4.58 46.70 4.40
554 555 1.246056 AACATTCCATGCGCAGTGCT 61.246 50.000 18.32 0.00 46.63 4.40
555 556 1.063649 CATTCCATGCGCAGTGCTC 59.936 57.895 18.32 5.71 46.63 4.26
556 557 2.117156 ATTCCATGCGCAGTGCTCC 61.117 57.895 18.32 4.59 46.63 4.70
557 558 2.547640 ATTCCATGCGCAGTGCTCCT 62.548 55.000 18.32 0.00 46.63 3.69
558 559 2.749044 CCATGCGCAGTGCTCCTT 60.749 61.111 18.32 0.00 46.63 3.36
559 560 2.758089 CCATGCGCAGTGCTCCTTC 61.758 63.158 18.32 0.00 46.63 3.46
560 561 2.437359 ATGCGCAGTGCTCCTTCC 60.437 61.111 18.32 0.00 46.63 3.46
561 562 2.964310 ATGCGCAGTGCTCCTTCCT 61.964 57.895 18.32 0.00 46.63 3.36
562 563 2.817396 GCGCAGTGCTCCTTCCTC 60.817 66.667 14.33 0.00 41.73 3.71
563 564 2.977178 CGCAGTGCTCCTTCCTCT 59.023 61.111 14.33 0.00 0.00 3.69
564 565 1.153667 CGCAGTGCTCCTTCCTCTC 60.154 63.158 14.33 0.00 0.00 3.20
565 566 1.220477 GCAGTGCTCCTTCCTCTCC 59.780 63.158 8.18 0.00 0.00 3.71
566 567 1.548357 GCAGTGCTCCTTCCTCTCCA 61.548 60.000 8.18 0.00 0.00 3.86
567 568 0.536260 CAGTGCTCCTTCCTCTCCAG 59.464 60.000 0.00 0.00 0.00 3.86
568 569 0.116143 AGTGCTCCTTCCTCTCCAGT 59.884 55.000 0.00 0.00 0.00 4.00
569 570 0.248843 GTGCTCCTTCCTCTCCAGTG 59.751 60.000 0.00 0.00 0.00 3.66
570 571 0.178921 TGCTCCTTCCTCTCCAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
571 572 1.077169 TGCTCCTTCCTCTCCAGTGTA 59.923 52.381 0.00 0.00 0.00 2.90
572 573 2.292521 TGCTCCTTCCTCTCCAGTGTAT 60.293 50.000 0.00 0.00 0.00 2.29
573 574 2.769095 GCTCCTTCCTCTCCAGTGTATT 59.231 50.000 0.00 0.00 0.00 1.89
574 575 3.181470 GCTCCTTCCTCTCCAGTGTATTC 60.181 52.174 0.00 0.00 0.00 1.75
575 576 4.026744 CTCCTTCCTCTCCAGTGTATTCA 58.973 47.826 0.00 0.00 0.00 2.57
576 577 4.425772 TCCTTCCTCTCCAGTGTATTCAA 58.574 43.478 0.00 0.00 0.00 2.69
577 578 4.223032 TCCTTCCTCTCCAGTGTATTCAAC 59.777 45.833 0.00 0.00 0.00 3.18
578 579 4.508662 CTTCCTCTCCAGTGTATTCAACC 58.491 47.826 0.00 0.00 0.00 3.77
579 580 2.838202 TCCTCTCCAGTGTATTCAACCC 59.162 50.000 0.00 0.00 0.00 4.11
580 581 2.571653 CCTCTCCAGTGTATTCAACCCA 59.428 50.000 0.00 0.00 0.00 4.51
581 582 3.600388 CTCTCCAGTGTATTCAACCCAC 58.400 50.000 0.00 0.00 0.00 4.61
582 583 2.028476 TCTCCAGTGTATTCAACCCACG 60.028 50.000 0.00 0.00 34.34 4.94
583 584 1.972075 TCCAGTGTATTCAACCCACGA 59.028 47.619 0.00 0.00 34.34 4.35
584 585 2.073816 CCAGTGTATTCAACCCACGAC 58.926 52.381 0.00 0.00 34.34 4.34
585 586 2.289444 CCAGTGTATTCAACCCACGACT 60.289 50.000 0.00 0.00 34.34 4.18
595 596 3.299977 CCACGACTGGTCCGTCCA 61.300 66.667 7.87 0.00 45.01 4.02
620 621 0.179205 GACGGTTCGTGTAGTCTCCG 60.179 60.000 0.00 0.00 41.37 4.63
651 652 3.993736 GTGTGTTTTTCCACAGCAAACTT 59.006 39.130 0.00 0.00 45.45 2.66
660 661 0.814457 ACAGCAAACTTTGTCGGCAA 59.186 45.000 0.00 0.00 0.00 4.52
694 695 2.550699 ATCCGCTTTCCAATCCGCCA 62.551 55.000 0.00 0.00 0.00 5.69
778 779 8.602424 TCAATTTCCTGTAAATCTGGTTCTCTA 58.398 33.333 0.00 0.00 36.76 2.43
1047 1048 2.420687 GGAGGGAGTGGAATGTAAGCTG 60.421 54.545 0.00 0.00 0.00 4.24
1208 1209 2.767644 ACTTTAGCAGGGGTTTGGTT 57.232 45.000 0.00 0.00 0.00 3.67
1250 1251 3.462954 TGCAAGGATATGGGAAGGAATCA 59.537 43.478 0.00 0.00 0.00 2.57
1357 1358 5.476945 GTGATGGAAGATTTTGTACCCAGTT 59.523 40.000 0.00 0.00 0.00 3.16
1638 1657 5.975113 AGATGATGAAGAGGATAAGGAGGA 58.025 41.667 0.00 0.00 0.00 3.71
1643 1662 5.700402 TGAAGAGGATAAGGAGGAAAAGG 57.300 43.478 0.00 0.00 0.00 3.11
1814 1836 6.701400 GCAACAATTTTAAGAGGAAGCTCAAA 59.299 34.615 0.00 0.00 0.00 2.69
1816 1838 7.346751 ACAATTTTAAGAGGAAGCTCAAACA 57.653 32.000 0.00 0.00 0.00 2.83
1828 1850 1.462670 GCTCAAACAAAGAGAGGAGCG 59.537 52.381 0.00 0.00 38.44 5.03
2106 2128 6.763610 GCTTAGAAGATGGCTTGTGTACTAAT 59.236 38.462 0.00 0.00 33.61 1.73
2354 2376 4.614535 CGAACCAAAGAAGAGAAATGCTGG 60.615 45.833 0.00 0.00 0.00 4.85
2424 2446 1.200948 GATCCTGTTTGTGAAGCTGGC 59.799 52.381 0.00 0.00 0.00 4.85
2462 2484 8.703336 GGAAGAAAATACAAACTCTGAATTTGC 58.297 33.333 11.13 0.00 40.10 3.68
2570 2592 2.231380 GGGGCTTCTGGACCTCCAA 61.231 63.158 0.00 0.00 46.97 3.53
2577 2599 2.282180 TGGACCTCCAAAAGCGGC 60.282 61.111 0.00 0.00 44.35 6.53
2578 2600 2.034221 GGACCTCCAAAAGCGGCT 59.966 61.111 0.00 0.00 35.64 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.595823 TCAAGTAACAGTTAGCCTACAAATATC 57.404 33.333 0.00 0.00 0.00 1.63
1 2 9.953565 TTCAAGTAACAGTTAGCCTACAAATAT 57.046 29.630 0.00 0.00 0.00 1.28
2 3 9.781633 TTTCAAGTAACAGTTAGCCTACAAATA 57.218 29.630 0.00 0.00 0.00 1.40
3 4 8.685838 TTTCAAGTAACAGTTAGCCTACAAAT 57.314 30.769 0.00 0.00 0.00 2.32
4 5 7.227910 CCTTTCAAGTAACAGTTAGCCTACAAA 59.772 37.037 0.00 0.00 0.00 2.83
5 6 6.708949 CCTTTCAAGTAACAGTTAGCCTACAA 59.291 38.462 0.00 0.00 0.00 2.41
6 7 6.228258 CCTTTCAAGTAACAGTTAGCCTACA 58.772 40.000 0.00 0.00 0.00 2.74
7 8 5.121925 GCCTTTCAAGTAACAGTTAGCCTAC 59.878 44.000 0.00 0.00 0.00 3.18
8 9 5.221762 TGCCTTTCAAGTAACAGTTAGCCTA 60.222 40.000 0.00 0.00 0.00 3.93
9 10 4.072839 GCCTTTCAAGTAACAGTTAGCCT 58.927 43.478 0.00 0.00 0.00 4.58
10 11 3.818773 TGCCTTTCAAGTAACAGTTAGCC 59.181 43.478 0.00 0.00 0.00 3.93
11 12 5.393962 CATGCCTTTCAAGTAACAGTTAGC 58.606 41.667 0.00 0.00 0.00 3.09
12 13 5.182001 AGCATGCCTTTCAAGTAACAGTTAG 59.818 40.000 15.66 0.00 0.00 2.34
13 14 5.070001 AGCATGCCTTTCAAGTAACAGTTA 58.930 37.500 15.66 0.00 0.00 2.24
14 15 3.891366 AGCATGCCTTTCAAGTAACAGTT 59.109 39.130 15.66 0.00 0.00 3.16
15 16 3.490348 AGCATGCCTTTCAAGTAACAGT 58.510 40.909 15.66 0.00 0.00 3.55
16 17 5.824904 ATAGCATGCCTTTCAAGTAACAG 57.175 39.130 15.66 0.00 0.00 3.16
17 18 5.476599 ACAATAGCATGCCTTTCAAGTAACA 59.523 36.000 15.66 0.00 0.00 2.41
18 19 5.954335 ACAATAGCATGCCTTTCAAGTAAC 58.046 37.500 15.66 0.00 0.00 2.50
19 20 6.015519 ACAACAATAGCATGCCTTTCAAGTAA 60.016 34.615 15.66 0.00 0.00 2.24
20 21 5.476599 ACAACAATAGCATGCCTTTCAAGTA 59.523 36.000 15.66 0.00 0.00 2.24
21 22 4.281688 ACAACAATAGCATGCCTTTCAAGT 59.718 37.500 15.66 3.44 0.00 3.16
22 23 4.813027 ACAACAATAGCATGCCTTTCAAG 58.187 39.130 15.66 2.75 0.00 3.02
23 24 4.870123 ACAACAATAGCATGCCTTTCAA 57.130 36.364 15.66 0.00 0.00 2.69
24 25 5.009631 AGTACAACAATAGCATGCCTTTCA 58.990 37.500 15.66 0.00 0.00 2.69
25 26 5.567138 AGTACAACAATAGCATGCCTTTC 57.433 39.130 15.66 0.00 0.00 2.62
26 27 5.982890 AAGTACAACAATAGCATGCCTTT 57.017 34.783 15.66 5.39 0.00 3.11
27 28 5.711976 AGAAAGTACAACAATAGCATGCCTT 59.288 36.000 15.66 5.60 0.00 4.35
28 29 5.256474 AGAAAGTACAACAATAGCATGCCT 58.744 37.500 15.66 4.37 0.00 4.75
29 30 5.355350 AGAGAAAGTACAACAATAGCATGCC 59.645 40.000 15.66 0.00 0.00 4.40
30 31 6.428385 AGAGAAAGTACAACAATAGCATGC 57.572 37.500 10.51 10.51 0.00 4.06
31 32 9.155975 ACTAAGAGAAAGTACAACAATAGCATG 57.844 33.333 0.00 0.00 0.00 4.06
32 33 9.726438 AACTAAGAGAAAGTACAACAATAGCAT 57.274 29.630 0.00 0.00 0.00 3.79
33 34 8.988934 CAACTAAGAGAAAGTACAACAATAGCA 58.011 33.333 0.00 0.00 0.00 3.49
34 35 8.443937 CCAACTAAGAGAAAGTACAACAATAGC 58.556 37.037 0.00 0.00 0.00 2.97
35 36 9.706691 TCCAACTAAGAGAAAGTACAACAATAG 57.293 33.333 0.00 0.00 0.00 1.73
37 38 9.574516 AATCCAACTAAGAGAAAGTACAACAAT 57.425 29.630 0.00 0.00 0.00 2.71
38 39 8.974060 AATCCAACTAAGAGAAAGTACAACAA 57.026 30.769 0.00 0.00 0.00 2.83
39 40 9.706691 CTAATCCAACTAAGAGAAAGTACAACA 57.293 33.333 0.00 0.00 0.00 3.33
40 41 9.924650 TCTAATCCAACTAAGAGAAAGTACAAC 57.075 33.333 0.00 0.00 0.00 3.32
48 49 9.231297 CCAACAAATCTAATCCAACTAAGAGAA 57.769 33.333 0.00 0.00 0.00 2.87
49 50 8.602424 TCCAACAAATCTAATCCAACTAAGAGA 58.398 33.333 0.00 0.00 0.00 3.10
50 51 8.792830 TCCAACAAATCTAATCCAACTAAGAG 57.207 34.615 0.00 0.00 0.00 2.85
51 52 9.396022 GATCCAACAAATCTAATCCAACTAAGA 57.604 33.333 0.00 0.00 0.00 2.10
52 53 9.401058 AGATCCAACAAATCTAATCCAACTAAG 57.599 33.333 0.00 0.00 31.71 2.18
53 54 9.753674 AAGATCCAACAAATCTAATCCAACTAA 57.246 29.630 0.00 0.00 33.15 2.24
54 55 9.396022 GAAGATCCAACAAATCTAATCCAACTA 57.604 33.333 0.00 0.00 33.15 2.24
55 56 7.340487 GGAAGATCCAACAAATCTAATCCAACT 59.660 37.037 0.00 0.00 36.28 3.16
56 57 7.122650 TGGAAGATCCAACAAATCTAATCCAAC 59.877 37.037 0.00 0.00 45.00 3.77
57 58 7.181361 TGGAAGATCCAACAAATCTAATCCAA 58.819 34.615 0.00 0.00 45.00 3.53
58 59 6.730447 TGGAAGATCCAACAAATCTAATCCA 58.270 36.000 0.00 3.51 45.00 3.41
72 73 8.673711 CAAATAGAATAAACGTTGGAAGATCCA 58.326 33.333 0.00 0.00 46.61 3.41
73 74 7.644157 GCAAATAGAATAAACGTTGGAAGATCC 59.356 37.037 0.00 0.00 36.96 3.36
74 75 8.181573 TGCAAATAGAATAAACGTTGGAAGATC 58.818 33.333 0.00 0.00 0.00 2.75
75 76 8.050778 TGCAAATAGAATAAACGTTGGAAGAT 57.949 30.769 0.00 0.00 0.00 2.40
76 77 7.441890 TGCAAATAGAATAAACGTTGGAAGA 57.558 32.000 0.00 0.00 0.00 2.87
77 78 9.950680 ATATGCAAATAGAATAAACGTTGGAAG 57.049 29.630 0.00 0.00 0.00 3.46
78 79 9.729023 CATATGCAAATAGAATAAACGTTGGAA 57.271 29.630 0.00 0.00 0.00 3.53
79 80 8.898761 ACATATGCAAATAGAATAAACGTTGGA 58.101 29.630 0.00 0.00 0.00 3.53
80 81 8.957028 CACATATGCAAATAGAATAAACGTTGG 58.043 33.333 0.00 0.00 0.00 3.77
99 100 7.920151 TCTTTTTAAATCCGATTGGCACATATG 59.080 33.333 0.00 0.00 39.30 1.78
100 101 8.006298 TCTTTTTAAATCCGATTGGCACATAT 57.994 30.769 0.00 0.00 39.30 1.78
101 102 7.122055 ACTCTTTTTAAATCCGATTGGCACATA 59.878 33.333 0.00 0.00 39.30 2.29
102 103 6.071391 ACTCTTTTTAAATCCGATTGGCACAT 60.071 34.615 0.00 0.00 39.30 3.21
103 104 5.242838 ACTCTTTTTAAATCCGATTGGCACA 59.757 36.000 0.00 0.00 34.14 4.57
104 105 5.709966 ACTCTTTTTAAATCCGATTGGCAC 58.290 37.500 0.00 0.00 34.14 5.01
105 106 5.105917 GGACTCTTTTTAAATCCGATTGGCA 60.106 40.000 0.00 0.00 34.14 4.92
106 107 5.340803 GGACTCTTTTTAAATCCGATTGGC 58.659 41.667 0.00 0.00 34.14 4.52
107 108 5.448632 CGGGACTCTTTTTAAATCCGATTGG 60.449 44.000 0.00 0.00 38.64 3.16
108 109 5.569413 CGGGACTCTTTTTAAATCCGATTG 58.431 41.667 0.00 0.00 38.64 2.67
109 110 4.095932 GCGGGACTCTTTTTAAATCCGATT 59.904 41.667 0.00 0.00 38.64 3.34
110 111 3.626217 GCGGGACTCTTTTTAAATCCGAT 59.374 43.478 0.00 0.00 38.64 4.18
111 112 3.004862 GCGGGACTCTTTTTAAATCCGA 58.995 45.455 0.00 0.00 38.64 4.55
112 113 3.007635 AGCGGGACTCTTTTTAAATCCG 58.992 45.455 0.00 0.00 39.26 4.18
113 114 4.436986 CGAAGCGGGACTCTTTTTAAATCC 60.437 45.833 0.00 0.00 31.42 3.01
114 115 4.436986 CCGAAGCGGGACTCTTTTTAAATC 60.437 45.833 0.00 0.00 44.15 2.17
115 116 3.439129 CCGAAGCGGGACTCTTTTTAAAT 59.561 43.478 0.00 0.00 44.15 1.40
116 117 2.809696 CCGAAGCGGGACTCTTTTTAAA 59.190 45.455 0.00 0.00 44.15 1.52
117 118 2.419667 CCGAAGCGGGACTCTTTTTAA 58.580 47.619 0.00 0.00 44.15 1.52
118 119 2.088950 CCGAAGCGGGACTCTTTTTA 57.911 50.000 0.00 0.00 44.15 1.52
119 120 2.928416 CCGAAGCGGGACTCTTTTT 58.072 52.632 0.00 0.00 44.15 1.94
120 121 4.695560 CCGAAGCGGGACTCTTTT 57.304 55.556 0.00 0.00 44.15 2.27
130 131 2.132762 GGTCCATATTGTACCGAAGCG 58.867 52.381 0.00 0.00 0.00 4.68
131 132 3.470645 AGGTCCATATTGTACCGAAGC 57.529 47.619 0.00 0.00 38.37 3.86
132 133 5.293569 GTCAAAGGTCCATATTGTACCGAAG 59.706 44.000 0.00 0.00 38.37 3.79
133 134 5.180271 GTCAAAGGTCCATATTGTACCGAA 58.820 41.667 0.00 0.00 38.37 4.30
134 135 4.223255 TGTCAAAGGTCCATATTGTACCGA 59.777 41.667 0.00 0.00 38.37 4.69
135 136 4.509616 TGTCAAAGGTCCATATTGTACCG 58.490 43.478 0.00 0.00 38.37 4.02
136 137 5.741011 TCTGTCAAAGGTCCATATTGTACC 58.259 41.667 0.00 0.00 0.00 3.34
137 138 7.865706 AATCTGTCAAAGGTCCATATTGTAC 57.134 36.000 0.00 0.00 0.00 2.90
139 140 9.561069 GTATAATCTGTCAAAGGTCCATATTGT 57.439 33.333 0.00 0.00 0.00 2.71
140 141 8.712363 CGTATAATCTGTCAAAGGTCCATATTG 58.288 37.037 0.00 0.00 0.00 1.90
141 142 7.878127 CCGTATAATCTGTCAAAGGTCCATATT 59.122 37.037 0.00 0.00 0.00 1.28
142 143 7.386851 CCGTATAATCTGTCAAAGGTCCATAT 58.613 38.462 0.00 0.00 0.00 1.78
143 144 6.239487 CCCGTATAATCTGTCAAAGGTCCATA 60.239 42.308 0.00 0.00 0.00 2.74
144 145 5.454755 CCCGTATAATCTGTCAAAGGTCCAT 60.455 44.000 0.00 0.00 0.00 3.41
145 146 4.141801 CCCGTATAATCTGTCAAAGGTCCA 60.142 45.833 0.00 0.00 0.00 4.02
146 147 4.141779 ACCCGTATAATCTGTCAAAGGTCC 60.142 45.833 0.00 0.00 0.00 4.46
147 148 4.809426 CACCCGTATAATCTGTCAAAGGTC 59.191 45.833 0.00 0.00 0.00 3.85
148 149 4.766375 CACCCGTATAATCTGTCAAAGGT 58.234 43.478 0.00 0.00 0.00 3.50
149 150 3.560068 GCACCCGTATAATCTGTCAAAGG 59.440 47.826 0.00 0.00 0.00 3.11
150 151 3.245284 CGCACCCGTATAATCTGTCAAAG 59.755 47.826 0.00 0.00 0.00 2.77
151 152 3.191669 CGCACCCGTATAATCTGTCAAA 58.808 45.455 0.00 0.00 0.00 2.69
152 153 2.482316 CCGCACCCGTATAATCTGTCAA 60.482 50.000 0.00 0.00 0.00 3.18
153 154 1.067974 CCGCACCCGTATAATCTGTCA 59.932 52.381 0.00 0.00 0.00 3.58
154 155 1.338973 TCCGCACCCGTATAATCTGTC 59.661 52.381 0.00 0.00 0.00 3.51
155 156 1.405872 TCCGCACCCGTATAATCTGT 58.594 50.000 0.00 0.00 0.00 3.41
156 157 2.519377 TTCCGCACCCGTATAATCTG 57.481 50.000 0.00 0.00 0.00 2.90
157 158 2.224209 CCTTTCCGCACCCGTATAATCT 60.224 50.000 0.00 0.00 0.00 2.40
158 159 2.140717 CCTTTCCGCACCCGTATAATC 58.859 52.381 0.00 0.00 0.00 1.75
159 160 1.812708 GCCTTTCCGCACCCGTATAAT 60.813 52.381 0.00 0.00 0.00 1.28
160 161 0.462403 GCCTTTCCGCACCCGTATAA 60.462 55.000 0.00 0.00 0.00 0.98
161 162 1.144496 GCCTTTCCGCACCCGTATA 59.856 57.895 0.00 0.00 0.00 1.47
162 163 2.124860 GCCTTTCCGCACCCGTAT 60.125 61.111 0.00 0.00 0.00 3.06
163 164 4.745751 CGCCTTTCCGCACCCGTA 62.746 66.667 0.00 0.00 0.00 4.02
172 173 4.193334 GATTGCCGCCGCCTTTCC 62.193 66.667 0.00 0.00 0.00 3.13
173 174 4.536687 CGATTGCCGCCGCCTTTC 62.537 66.667 0.00 0.00 0.00 2.62
178 179 4.811761 GTGTTCGATTGCCGCCGC 62.812 66.667 0.00 0.00 38.37 6.53
179 180 2.832818 CTTGTGTTCGATTGCCGCCG 62.833 60.000 0.00 0.00 38.37 6.46
180 181 1.154225 CTTGTGTTCGATTGCCGCC 60.154 57.895 0.00 0.00 38.37 6.13
181 182 0.452784 GTCTTGTGTTCGATTGCCGC 60.453 55.000 0.00 0.00 38.37 6.53
182 183 0.165944 GGTCTTGTGTTCGATTGCCG 59.834 55.000 0.00 0.00 40.25 5.69
183 184 1.464997 GAGGTCTTGTGTTCGATTGCC 59.535 52.381 0.00 0.00 0.00 4.52
184 185 1.464997 GGAGGTCTTGTGTTCGATTGC 59.535 52.381 0.00 0.00 0.00 3.56
185 186 2.738846 CAGGAGGTCTTGTGTTCGATTG 59.261 50.000 0.00 0.00 0.00 2.67
186 187 2.289694 CCAGGAGGTCTTGTGTTCGATT 60.290 50.000 0.00 0.00 0.00 3.34
187 188 1.276421 CCAGGAGGTCTTGTGTTCGAT 59.724 52.381 0.00 0.00 0.00 3.59
188 189 0.679505 CCAGGAGGTCTTGTGTTCGA 59.320 55.000 0.00 0.00 0.00 3.71
189 190 3.217242 CCAGGAGGTCTTGTGTTCG 57.783 57.895 0.00 0.00 0.00 3.95
200 201 3.423539 TGTTTGATTGAGACCAGGAGG 57.576 47.619 0.00 0.00 42.21 4.30
201 202 3.190118 GCTTGTTTGATTGAGACCAGGAG 59.810 47.826 0.00 0.00 0.00 3.69
202 203 3.149196 GCTTGTTTGATTGAGACCAGGA 58.851 45.455 0.00 0.00 0.00 3.86
203 204 2.229784 GGCTTGTTTGATTGAGACCAGG 59.770 50.000 0.00 0.00 0.00 4.45
204 205 2.095567 CGGCTTGTTTGATTGAGACCAG 60.096 50.000 0.00 0.00 0.00 4.00
205 206 1.879380 CGGCTTGTTTGATTGAGACCA 59.121 47.619 0.00 0.00 0.00 4.02
206 207 2.151202 TCGGCTTGTTTGATTGAGACC 58.849 47.619 0.00 0.00 0.00 3.85
207 208 3.555518 GTTCGGCTTGTTTGATTGAGAC 58.444 45.455 0.00 0.00 0.00 3.36
208 209 2.552315 GGTTCGGCTTGTTTGATTGAGA 59.448 45.455 0.00 0.00 0.00 3.27
209 210 2.293122 TGGTTCGGCTTGTTTGATTGAG 59.707 45.455 0.00 0.00 0.00 3.02
210 211 2.034053 GTGGTTCGGCTTGTTTGATTGA 59.966 45.455 0.00 0.00 0.00 2.57
211 212 2.034558 AGTGGTTCGGCTTGTTTGATTG 59.965 45.455 0.00 0.00 0.00 2.67
212 213 2.306847 AGTGGTTCGGCTTGTTTGATT 58.693 42.857 0.00 0.00 0.00 2.57
213 214 1.981256 AGTGGTTCGGCTTGTTTGAT 58.019 45.000 0.00 0.00 0.00 2.57
214 215 2.103432 TCTAGTGGTTCGGCTTGTTTGA 59.897 45.455 0.00 0.00 0.00 2.69
215 216 2.223377 GTCTAGTGGTTCGGCTTGTTTG 59.777 50.000 0.00 0.00 0.00 2.93
216 217 2.104281 AGTCTAGTGGTTCGGCTTGTTT 59.896 45.455 0.00 0.00 0.00 2.83
217 218 1.692519 AGTCTAGTGGTTCGGCTTGTT 59.307 47.619 0.00 0.00 0.00 2.83
218 219 1.339097 AGTCTAGTGGTTCGGCTTGT 58.661 50.000 0.00 0.00 0.00 3.16
219 220 3.056749 ACTTAGTCTAGTGGTTCGGCTTG 60.057 47.826 0.00 0.00 0.00 4.01
220 221 3.163467 ACTTAGTCTAGTGGTTCGGCTT 58.837 45.455 0.00 0.00 0.00 4.35
221 222 2.754002 GACTTAGTCTAGTGGTTCGGCT 59.246 50.000 4.94 0.00 0.00 5.52
222 223 2.490903 TGACTTAGTCTAGTGGTTCGGC 59.509 50.000 13.86 0.00 33.15 5.54
223 224 4.641094 AGATGACTTAGTCTAGTGGTTCGG 59.359 45.833 13.86 0.00 33.15 4.30
224 225 5.587043 AGAGATGACTTAGTCTAGTGGTTCG 59.413 44.000 13.86 0.00 33.15 3.95
225 226 8.685838 ATAGAGATGACTTAGTCTAGTGGTTC 57.314 38.462 13.86 2.59 33.15 3.62
226 227 8.908903 CAATAGAGATGACTTAGTCTAGTGGTT 58.091 37.037 13.86 0.00 35.15 3.67
227 228 8.275758 TCAATAGAGATGACTTAGTCTAGTGGT 58.724 37.037 13.86 0.00 37.89 4.16
228 229 8.564574 GTCAATAGAGATGACTTAGTCTAGTGG 58.435 40.741 13.86 0.00 43.03 4.00
229 230 9.114952 TGTCAATAGAGATGACTTAGTCTAGTG 57.885 37.037 13.86 6.78 45.81 2.74
230 231 9.688091 TTGTCAATAGAGATGACTTAGTCTAGT 57.312 33.333 13.86 0.00 45.81 2.57
235 236 9.757227 GCTAATTGTCAATAGAGATGACTTAGT 57.243 33.333 10.29 0.00 45.81 2.24
236 237 9.755804 TGCTAATTGTCAATAGAGATGACTTAG 57.244 33.333 10.29 8.89 45.81 2.18
237 238 9.755804 CTGCTAATTGTCAATAGAGATGACTTA 57.244 33.333 10.29 0.00 45.81 2.24
238 239 7.226325 GCTGCTAATTGTCAATAGAGATGACTT 59.774 37.037 10.29 0.00 45.81 3.01
239 240 6.705381 GCTGCTAATTGTCAATAGAGATGACT 59.295 38.462 10.29 0.00 45.81 3.41
240 241 6.481313 TGCTGCTAATTGTCAATAGAGATGAC 59.519 38.462 0.00 0.00 45.82 3.06
241 242 6.481313 GTGCTGCTAATTGTCAATAGAGATGA 59.519 38.462 0.00 0.00 0.00 2.92
242 243 6.563567 CGTGCTGCTAATTGTCAATAGAGATG 60.564 42.308 0.00 4.64 0.00 2.90
243 244 5.464722 CGTGCTGCTAATTGTCAATAGAGAT 59.535 40.000 0.00 0.00 0.00 2.75
244 245 4.805719 CGTGCTGCTAATTGTCAATAGAGA 59.194 41.667 0.00 0.00 0.00 3.10
245 246 4.025396 CCGTGCTGCTAATTGTCAATAGAG 60.025 45.833 0.00 1.13 0.00 2.43
246 247 3.871006 CCGTGCTGCTAATTGTCAATAGA 59.129 43.478 0.00 0.00 0.00 1.98
247 248 3.871006 TCCGTGCTGCTAATTGTCAATAG 59.129 43.478 0.00 0.00 0.00 1.73
248 249 3.867857 TCCGTGCTGCTAATTGTCAATA 58.132 40.909 0.00 0.00 0.00 1.90
249 250 2.710377 TCCGTGCTGCTAATTGTCAAT 58.290 42.857 0.00 0.00 0.00 2.57
250 251 2.177394 TCCGTGCTGCTAATTGTCAA 57.823 45.000 0.00 0.00 0.00 3.18
251 252 2.177394 TTCCGTGCTGCTAATTGTCA 57.823 45.000 0.00 0.00 0.00 3.58
252 253 5.424121 AATATTCCGTGCTGCTAATTGTC 57.576 39.130 0.00 0.00 0.00 3.18
253 254 6.765989 TCTTAATATTCCGTGCTGCTAATTGT 59.234 34.615 0.00 0.00 0.00 2.71
254 255 7.189693 TCTTAATATTCCGTGCTGCTAATTG 57.810 36.000 0.00 0.00 0.00 2.32
255 256 7.499232 AGTTCTTAATATTCCGTGCTGCTAATT 59.501 33.333 0.00 0.00 0.00 1.40
256 257 6.992715 AGTTCTTAATATTCCGTGCTGCTAAT 59.007 34.615 0.00 0.00 0.00 1.73
257 258 6.346096 AGTTCTTAATATTCCGTGCTGCTAA 58.654 36.000 0.00 0.00 0.00 3.09
258 259 5.914033 AGTTCTTAATATTCCGTGCTGCTA 58.086 37.500 0.00 0.00 0.00 3.49
259 260 4.770795 AGTTCTTAATATTCCGTGCTGCT 58.229 39.130 0.00 0.00 0.00 4.24
260 261 6.593978 CATAGTTCTTAATATTCCGTGCTGC 58.406 40.000 0.00 0.00 0.00 5.25
261 262 6.593978 GCATAGTTCTTAATATTCCGTGCTG 58.406 40.000 0.00 0.00 0.00 4.41
262 263 5.405571 CGCATAGTTCTTAATATTCCGTGCT 59.594 40.000 0.00 0.00 0.00 4.40
263 264 5.404366 TCGCATAGTTCTTAATATTCCGTGC 59.596 40.000 0.00 0.00 0.00 5.34
264 265 7.402811 TTCGCATAGTTCTTAATATTCCGTG 57.597 36.000 0.00 0.00 0.00 4.94
265 266 6.145696 GCTTCGCATAGTTCTTAATATTCCGT 59.854 38.462 0.00 0.00 0.00 4.69
266 267 6.145534 TGCTTCGCATAGTTCTTAATATTCCG 59.854 38.462 0.00 0.00 31.71 4.30
267 268 7.421530 TGCTTCGCATAGTTCTTAATATTCC 57.578 36.000 0.00 0.00 31.71 3.01
268 269 8.335356 TGTTGCTTCGCATAGTTCTTAATATTC 58.665 33.333 0.00 0.00 38.76 1.75
269 270 8.208718 TGTTGCTTCGCATAGTTCTTAATATT 57.791 30.769 0.00 0.00 38.76 1.28
270 271 7.786178 TGTTGCTTCGCATAGTTCTTAATAT 57.214 32.000 0.00 0.00 38.76 1.28
271 272 7.786178 ATGTTGCTTCGCATAGTTCTTAATA 57.214 32.000 0.00 0.00 38.76 0.98
272 273 6.683974 ATGTTGCTTCGCATAGTTCTTAAT 57.316 33.333 0.00 0.00 38.76 1.40
273 274 7.786178 ATATGTTGCTTCGCATAGTTCTTAA 57.214 32.000 0.00 0.00 38.76 1.85
274 275 7.786178 AATATGTTGCTTCGCATAGTTCTTA 57.214 32.000 0.00 0.00 38.76 2.10
275 276 6.683974 AATATGTTGCTTCGCATAGTTCTT 57.316 33.333 0.00 0.00 38.76 2.52
276 277 6.316140 TCAAATATGTTGCTTCGCATAGTTCT 59.684 34.615 0.00 0.00 38.76 3.01
277 278 6.486248 TCAAATATGTTGCTTCGCATAGTTC 58.514 36.000 0.00 0.00 38.76 3.01
278 279 6.435430 TCAAATATGTTGCTTCGCATAGTT 57.565 33.333 0.00 0.00 38.76 2.24
279 280 6.435430 TTCAAATATGTTGCTTCGCATAGT 57.565 33.333 0.00 0.00 38.76 2.12
280 281 6.914215 ACATTCAAATATGTTGCTTCGCATAG 59.086 34.615 0.00 0.00 38.76 2.23
281 282 6.794374 ACATTCAAATATGTTGCTTCGCATA 58.206 32.000 0.00 0.00 38.76 3.14
282 283 5.653507 ACATTCAAATATGTTGCTTCGCAT 58.346 33.333 0.00 0.00 38.76 4.73
283 284 5.058149 ACATTCAAATATGTTGCTTCGCA 57.942 34.783 0.00 0.00 35.24 5.10
284 285 6.393720 AAACATTCAAATATGTTGCTTCGC 57.606 33.333 3.05 0.00 45.44 4.70
307 308 7.352719 ACAACTGCGTACAAATTTTGAAAAA 57.647 28.000 15.81 0.00 0.00 1.94
308 309 6.952935 ACAACTGCGTACAAATTTTGAAAA 57.047 29.167 15.81 0.00 0.00 2.29
309 310 6.952935 AACAACTGCGTACAAATTTTGAAA 57.047 29.167 15.81 0.99 0.00 2.69
310 311 6.952935 AAACAACTGCGTACAAATTTTGAA 57.047 29.167 15.81 0.00 0.00 2.69
311 312 6.952935 AAAACAACTGCGTACAAATTTTGA 57.047 29.167 15.81 0.00 0.00 2.69
312 313 9.695884 ATTTAAAACAACTGCGTACAAATTTTG 57.304 25.926 7.59 7.59 0.00 2.44
313 314 9.695884 CATTTAAAACAACTGCGTACAAATTTT 57.304 25.926 0.00 0.00 0.00 1.82
314 315 7.848539 GCATTTAAAACAACTGCGTACAAATTT 59.151 29.630 0.00 0.00 0.00 1.82
315 316 7.010552 TGCATTTAAAACAACTGCGTACAAATT 59.989 29.630 6.32 0.00 35.63 1.82
316 317 6.477033 TGCATTTAAAACAACTGCGTACAAAT 59.523 30.769 6.32 0.00 35.63 2.32
317 318 5.805486 TGCATTTAAAACAACTGCGTACAAA 59.195 32.000 6.32 0.00 35.63 2.83
318 319 5.340803 TGCATTTAAAACAACTGCGTACAA 58.659 33.333 6.32 0.00 35.63 2.41
319 320 4.921547 TGCATTTAAAACAACTGCGTACA 58.078 34.783 6.32 0.00 35.63 2.90
320 321 5.874892 TTGCATTTAAAACAACTGCGTAC 57.125 34.783 6.32 0.00 35.63 3.67
321 322 5.805486 TGTTTGCATTTAAAACAACTGCGTA 59.195 32.000 6.54 0.00 42.83 4.42
322 323 4.627467 TGTTTGCATTTAAAACAACTGCGT 59.373 33.333 6.54 0.00 42.83 5.24
323 324 5.136250 TGTTTGCATTTAAAACAACTGCG 57.864 34.783 6.54 0.00 42.83 5.18
336 337 9.635520 TTCACAATTTTGAAAAATGTTTGCATT 57.364 22.222 8.52 0.00 38.53 3.56
337 338 9.635520 TTTCACAATTTTGAAAAATGTTTGCAT 57.364 22.222 15.60 0.00 41.48 3.96
348 349 9.604626 GTGTTCAATGTTTTCACAATTTTGAAA 57.395 25.926 14.29 14.29 39.46 2.69
349 350 8.777413 TGTGTTCAATGTTTTCACAATTTTGAA 58.223 25.926 2.88 2.88 37.20 2.69
350 351 8.315391 TGTGTTCAATGTTTTCACAATTTTGA 57.685 26.923 0.00 0.00 36.16 2.69
351 352 8.945758 TTGTGTTCAATGTTTTCACAATTTTG 57.054 26.923 0.00 0.00 41.77 2.44
357 358 7.895975 TCAAATTGTGTTCAATGTTTTCACA 57.104 28.000 0.00 0.00 42.60 3.58
358 359 9.771915 ATTTCAAATTGTGTTCAATGTTTTCAC 57.228 25.926 0.00 0.00 42.60 3.18
362 363 9.991388 CAGAATTTCAAATTGTGTTCAATGTTT 57.009 25.926 11.09 0.00 42.60 2.83
363 364 9.381033 TCAGAATTTCAAATTGTGTTCAATGTT 57.619 25.926 17.17 0.00 42.60 2.71
364 365 8.945481 TCAGAATTTCAAATTGTGTTCAATGT 57.055 26.923 17.17 0.00 42.60 2.71
366 367 9.767228 TGATCAGAATTTCAAATTGTGTTCAAT 57.233 25.926 22.38 10.09 44.94 2.57
367 368 9.597170 TTGATCAGAATTTCAAATTGTGTTCAA 57.403 25.926 27.06 27.06 38.01 2.69
368 369 9.597170 TTTGATCAGAATTTCAAATTGTGTTCA 57.403 25.926 21.42 21.42 37.03 3.18
394 395 9.447157 TCCAACTTTTGTTCTCATTTTGAAAAT 57.553 25.926 0.00 0.00 41.35 1.82
395 396 8.839310 TCCAACTTTTGTTCTCATTTTGAAAA 57.161 26.923 0.00 0.00 41.35 2.29
396 397 8.839310 TTCCAACTTTTGTTCTCATTTTGAAA 57.161 26.923 0.00 0.00 41.35 2.69
403 404 9.696917 GTTCATTATTCCAACTTTTGTTCTCAT 57.303 29.630 0.00 0.00 41.35 2.90
404 405 8.690884 TGTTCATTATTCCAACTTTTGTTCTCA 58.309 29.630 0.00 0.00 41.35 3.27
405 406 9.696917 ATGTTCATTATTCCAACTTTTGTTCTC 57.303 29.630 0.00 0.00 41.35 2.87
433 434 8.244802 TCAGGAATTTTGTTCGTGTTCTAAAAA 58.755 29.630 9.43 0.00 36.18 1.94
434 435 7.763356 TCAGGAATTTTGTTCGTGTTCTAAAA 58.237 30.769 9.43 0.00 36.18 1.52
435 436 7.323049 TCAGGAATTTTGTTCGTGTTCTAAA 57.677 32.000 9.43 0.00 36.18 1.85
436 437 6.928979 TCAGGAATTTTGTTCGTGTTCTAA 57.071 33.333 9.43 0.00 36.18 2.10
437 438 6.540914 ACTTCAGGAATTTTGTTCGTGTTCTA 59.459 34.615 9.43 0.00 36.18 2.10
438 439 5.357032 ACTTCAGGAATTTTGTTCGTGTTCT 59.643 36.000 9.43 0.00 36.18 3.01
439 440 5.578776 ACTTCAGGAATTTTGTTCGTGTTC 58.421 37.500 9.43 0.00 36.18 3.18
440 441 5.576447 ACTTCAGGAATTTTGTTCGTGTT 57.424 34.783 9.43 0.00 36.18 3.32
441 442 5.124776 TGAACTTCAGGAATTTTGTTCGTGT 59.875 36.000 9.43 0.00 37.27 4.49
442 443 5.577835 TGAACTTCAGGAATTTTGTTCGTG 58.422 37.500 4.59 4.59 37.27 4.35
443 444 5.828299 TGAACTTCAGGAATTTTGTTCGT 57.172 34.783 0.00 0.00 37.27 3.85
444 445 7.023575 CCTATGAACTTCAGGAATTTTGTTCG 58.976 38.462 0.00 0.00 37.27 3.95
445 446 8.110860 TCCTATGAACTTCAGGAATTTTGTTC 57.889 34.615 0.00 0.00 35.52 3.18
446 447 8.477419 TTCCTATGAACTTCAGGAATTTTGTT 57.523 30.769 7.95 0.00 42.24 2.83
447 448 7.309438 GCTTCCTATGAACTTCAGGAATTTTGT 60.309 37.037 11.19 0.00 45.14 2.83
448 449 7.031975 GCTTCCTATGAACTTCAGGAATTTTG 58.968 38.462 11.19 3.93 45.14 2.44
449 450 6.721208 TGCTTCCTATGAACTTCAGGAATTTT 59.279 34.615 11.19 0.00 45.14 1.82
450 451 6.248433 TGCTTCCTATGAACTTCAGGAATTT 58.752 36.000 11.19 0.00 45.14 1.82
451 452 5.819991 TGCTTCCTATGAACTTCAGGAATT 58.180 37.500 11.19 0.00 45.14 2.17
452 453 5.441718 TGCTTCCTATGAACTTCAGGAAT 57.558 39.130 11.19 0.00 45.14 3.01
453 454 4.908601 TGCTTCCTATGAACTTCAGGAA 57.091 40.909 10.57 10.57 44.32 3.36
454 455 4.565652 GGTTGCTTCCTATGAACTTCAGGA 60.566 45.833 0.00 0.00 36.68 3.86
455 456 3.691609 GGTTGCTTCCTATGAACTTCAGG 59.308 47.826 0.00 0.00 0.00 3.86
456 457 4.394300 CAGGTTGCTTCCTATGAACTTCAG 59.606 45.833 0.00 0.00 35.87 3.02
457 458 4.326826 CAGGTTGCTTCCTATGAACTTCA 58.673 43.478 0.00 0.00 35.87 3.02
458 459 3.127721 GCAGGTTGCTTCCTATGAACTTC 59.872 47.826 0.32 0.00 40.96 3.01
459 460 3.084786 GCAGGTTGCTTCCTATGAACTT 58.915 45.455 0.32 0.00 40.96 2.66
460 461 2.040278 TGCAGGTTGCTTCCTATGAACT 59.960 45.455 2.48 0.00 45.31 3.01
461 462 2.421424 CTGCAGGTTGCTTCCTATGAAC 59.579 50.000 5.57 0.00 45.31 3.18
462 463 2.040278 ACTGCAGGTTGCTTCCTATGAA 59.960 45.455 19.93 0.00 45.31 2.57
463 464 1.630369 ACTGCAGGTTGCTTCCTATGA 59.370 47.619 19.93 0.00 45.31 2.15
464 465 2.012673 GACTGCAGGTTGCTTCCTATG 58.987 52.381 19.93 0.00 45.31 2.23
465 466 1.065126 GGACTGCAGGTTGCTTCCTAT 60.065 52.381 19.93 0.00 45.31 2.57
466 467 0.324943 GGACTGCAGGTTGCTTCCTA 59.675 55.000 19.93 0.00 45.31 2.94
467 468 1.073897 GGACTGCAGGTTGCTTCCT 59.926 57.895 19.93 0.00 45.31 3.36
468 469 1.973812 GGGACTGCAGGTTGCTTCC 60.974 63.158 19.93 14.18 45.31 3.46
469 470 0.538287 AAGGGACTGCAGGTTGCTTC 60.538 55.000 19.93 4.85 45.31 3.86
470 471 0.106015 AAAGGGACTGCAGGTTGCTT 60.106 50.000 19.93 2.68 45.31 3.91
471 472 0.825010 CAAAGGGACTGCAGGTTGCT 60.825 55.000 19.93 0.00 45.31 3.91
472 473 1.109323 ACAAAGGGACTGCAGGTTGC 61.109 55.000 19.93 2.57 45.29 4.17
473 474 2.154462 CTACAAAGGGACTGCAGGTTG 58.846 52.381 19.93 15.05 40.86 3.77
474 475 1.073923 CCTACAAAGGGACTGCAGGTT 59.926 52.381 19.93 0.00 40.86 3.50
475 476 0.693049 CCTACAAAGGGACTGCAGGT 59.307 55.000 19.93 6.71 40.86 4.00
476 477 3.558674 CCTACAAAGGGACTGCAGG 57.441 57.895 19.93 0.00 40.86 4.85
507 508 7.065563 GGGGGTTTTATGTAAAAACAAAACGTT 59.934 33.333 13.51 0.00 42.97 3.99
508 509 6.538021 GGGGGTTTTATGTAAAAACAAAACGT 59.462 34.615 13.51 0.00 42.97 3.99
509 510 6.762187 AGGGGGTTTTATGTAAAAACAAAACG 59.238 34.615 13.51 0.00 42.97 3.60
510 511 9.610705 TTAGGGGGTTTTATGTAAAAACAAAAC 57.389 29.630 13.51 0.00 42.97 2.43
511 512 9.610705 GTTAGGGGGTTTTATGTAAAAACAAAA 57.389 29.630 13.51 2.01 42.97 2.44
512 513 8.765517 TGTTAGGGGGTTTTATGTAAAAACAAA 58.234 29.630 13.51 2.28 42.97 2.83
513 514 8.315220 TGTTAGGGGGTTTTATGTAAAAACAA 57.685 30.769 13.51 0.00 42.97 2.83
514 515 7.909485 TGTTAGGGGGTTTTATGTAAAAACA 57.091 32.000 13.51 4.75 42.97 2.83
515 516 9.426837 GAATGTTAGGGGGTTTTATGTAAAAAC 57.573 33.333 5.01 5.01 41.04 2.43
516 517 8.595421 GGAATGTTAGGGGGTTTTATGTAAAAA 58.405 33.333 0.00 0.00 36.97 1.94
517 518 7.733501 TGGAATGTTAGGGGGTTTTATGTAAAA 59.266 33.333 0.00 0.00 33.17 1.52
518 519 7.246763 TGGAATGTTAGGGGGTTTTATGTAAA 58.753 34.615 0.00 0.00 0.00 2.01
519 520 6.801953 TGGAATGTTAGGGGGTTTTATGTAA 58.198 36.000 0.00 0.00 0.00 2.41
520 521 6.404426 TGGAATGTTAGGGGGTTTTATGTA 57.596 37.500 0.00 0.00 0.00 2.29
521 522 5.278127 TGGAATGTTAGGGGGTTTTATGT 57.722 39.130 0.00 0.00 0.00 2.29
522 523 6.160576 CATGGAATGTTAGGGGGTTTTATG 57.839 41.667 0.00 0.00 40.20 1.90
538 539 2.117156 GGAGCACTGCGCATGGAAT 61.117 57.895 12.24 0.00 46.13 3.01
539 540 2.747460 GGAGCACTGCGCATGGAA 60.747 61.111 12.24 0.00 46.13 3.53
540 541 3.258228 AAGGAGCACTGCGCATGGA 62.258 57.895 12.24 0.00 46.13 3.41
541 542 2.749044 AAGGAGCACTGCGCATGG 60.749 61.111 12.24 7.41 46.13 3.66
542 543 2.758089 GGAAGGAGCACTGCGCATG 61.758 63.158 12.24 12.97 46.13 4.06
543 544 2.437359 GGAAGGAGCACTGCGCAT 60.437 61.111 12.24 0.00 46.13 4.73
544 545 3.596066 GAGGAAGGAGCACTGCGCA 62.596 63.158 10.98 10.98 46.13 6.09
545 546 2.817396 GAGGAAGGAGCACTGCGC 60.817 66.667 0.00 0.00 42.91 6.09
546 547 1.153667 GAGAGGAAGGAGCACTGCG 60.154 63.158 0.00 0.00 0.00 5.18
547 548 1.220477 GGAGAGGAAGGAGCACTGC 59.780 63.158 0.00 0.00 0.00 4.40
548 549 0.536260 CTGGAGAGGAAGGAGCACTG 59.464 60.000 0.00 0.00 0.00 3.66
549 550 0.116143 ACTGGAGAGGAAGGAGCACT 59.884 55.000 0.00 0.00 0.00 4.40
550 551 0.248843 CACTGGAGAGGAAGGAGCAC 59.751 60.000 0.00 0.00 0.00 4.40
551 552 0.178921 ACACTGGAGAGGAAGGAGCA 60.179 55.000 0.00 0.00 0.00 4.26
552 553 1.853963 TACACTGGAGAGGAAGGAGC 58.146 55.000 0.00 0.00 0.00 4.70
553 554 4.026744 TGAATACACTGGAGAGGAAGGAG 58.973 47.826 0.00 0.00 0.00 3.69
554 555 4.061131 TGAATACACTGGAGAGGAAGGA 57.939 45.455 0.00 0.00 0.00 3.36
555 556 4.508662 GTTGAATACACTGGAGAGGAAGG 58.491 47.826 0.00 0.00 0.00 3.46
556 557 4.508662 GGTTGAATACACTGGAGAGGAAG 58.491 47.826 0.00 0.00 0.00 3.46
557 558 3.263425 GGGTTGAATACACTGGAGAGGAA 59.737 47.826 0.00 0.00 0.00 3.36
558 559 2.838202 GGGTTGAATACACTGGAGAGGA 59.162 50.000 0.00 0.00 0.00 3.71
559 560 2.571653 TGGGTTGAATACACTGGAGAGG 59.428 50.000 0.00 0.00 0.00 3.69
560 561 3.600388 GTGGGTTGAATACACTGGAGAG 58.400 50.000 0.00 0.00 32.58 3.20
561 562 2.028476 CGTGGGTTGAATACACTGGAGA 60.028 50.000 0.00 0.00 33.13 3.71
562 563 2.028476 TCGTGGGTTGAATACACTGGAG 60.028 50.000 0.00 0.00 33.13 3.86
563 564 1.972075 TCGTGGGTTGAATACACTGGA 59.028 47.619 0.00 0.00 33.13 3.86
564 565 2.073816 GTCGTGGGTTGAATACACTGG 58.926 52.381 0.00 0.00 33.13 4.00
565 566 2.736721 CAGTCGTGGGTTGAATACACTG 59.263 50.000 0.00 0.00 33.13 3.66
566 567 2.289444 CCAGTCGTGGGTTGAATACACT 60.289 50.000 0.00 0.00 40.67 3.55
567 568 2.073816 CCAGTCGTGGGTTGAATACAC 58.926 52.381 0.00 0.00 40.67 2.90
568 569 2.465860 CCAGTCGTGGGTTGAATACA 57.534 50.000 0.00 0.00 40.67 2.29
620 621 1.596220 GGAAAAACACACGAAGTCGCC 60.596 52.381 0.00 0.00 41.61 5.54
651 652 1.945522 CGACAATGGTTGCCGACAA 59.054 52.632 0.00 0.00 38.91 3.18
660 661 1.379843 GGATTGGGGCGACAATGGT 60.380 57.895 10.24 0.00 40.92 3.55
694 695 2.978156 TTGCTGGAGATTGGAAAGGT 57.022 45.000 0.00 0.00 0.00 3.50
778 779 4.562143 GCAGCTTCAGTTGGATTTGGAAAT 60.562 41.667 0.00 0.00 0.00 2.17
970 971 0.183014 CCTGGTAGGACTCCGAGCTA 59.817 60.000 8.62 0.00 37.67 3.32
1047 1048 2.767505 TCCGAGAGCTTCAACTTTTCC 58.232 47.619 0.00 0.00 0.00 3.13
1208 1209 4.042809 TGCATTCTACCCTTGAGAAAGGAA 59.957 41.667 6.07 0.00 42.62 3.36
1250 1251 7.587037 TCTTCATGGAATGTGAAAAGAAACT 57.413 32.000 0.00 0.00 46.80 2.66
1514 1516 6.228273 AGTTGTTATATCGCATGAATTCCG 57.772 37.500 2.27 0.00 0.00 4.30
1536 1555 4.330074 GTGTGACGAACCTCATTATTGGAG 59.670 45.833 0.00 0.00 0.00 3.86
1722 1744 4.574674 AGTTGGACATGCCTTCTCAATA 57.425 40.909 7.54 0.00 37.63 1.90
1814 1836 0.036858 GCTTCCGCTCCTCTCTTTGT 60.037 55.000 0.00 0.00 0.00 2.83
1816 1838 2.677508 AGCTTCCGCTCCTCTCTTT 58.322 52.632 0.00 0.00 45.15 2.52
1828 1850 3.006967 TCACCTTAGTCACTTGAGCTTCC 59.993 47.826 0.00 0.00 0.00 3.46
1843 1865 6.366340 TGTTTGTTACCCAGAATTCACCTTA 58.634 36.000 8.44 0.00 0.00 2.69
1844 1866 5.205056 TGTTTGTTACCCAGAATTCACCTT 58.795 37.500 8.44 0.00 0.00 3.50
1935 1957 4.061131 TGTTGTTCTCTCTCCATCCCTA 57.939 45.455 0.00 0.00 0.00 3.53
2106 2128 1.185618 AGACCACTCCACTTGCGCTA 61.186 55.000 9.73 0.00 0.00 4.26
2168 2190 1.201647 CTGCATTCTCCTTTGGTGCTG 59.798 52.381 0.00 0.00 36.78 4.41
2354 2376 6.322712 ACTTTCTAGGTCTATGTCCATCAGAC 59.677 42.308 0.00 0.00 46.51 3.51
2424 2446 1.276622 TTTCTTCCTTCTCCCCTCCG 58.723 55.000 0.00 0.00 0.00 4.63
2490 2512 2.749076 CCGTGATCCTCATTTTGCTTCA 59.251 45.455 0.00 0.00 0.00 3.02
2510 2532 0.111061 AACCCCGGTAGTTCCAAACC 59.889 55.000 0.00 0.00 35.57 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.