Multiple sequence alignment - TraesCS1B01G070000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G070000 chr1B 100.000 2755 0 0 1 2755 55207182 55204428 0.000000e+00 5088
1 TraesCS1B01G070000 chr1B 98.631 1315 18 0 623 1937 55242348 55241034 0.000000e+00 2329
2 TraesCS1B01G070000 chr1B 85.723 1653 140 38 194 1838 55017891 55016327 0.000000e+00 1657
3 TraesCS1B01G070000 chr1B 85.043 1638 142 46 209 1838 54979338 54977796 0.000000e+00 1572
4 TraesCS1B01G070000 chr1B 99.303 574 4 0 1 574 55243138 55242565 0.000000e+00 1038
5 TraesCS1B01G070000 chr1B 97.378 572 9 2 2184 2755 55241040 55240475 0.000000e+00 968
6 TraesCS1B01G070000 chrUn 89.172 1256 98 13 593 1838 10695401 10696628 0.000000e+00 1531
7 TraesCS1B01G070000 chrUn 84.187 1132 150 20 633 1755 10650630 10651741 0.000000e+00 1072
8 TraesCS1B01G070000 chrUn 92.626 556 34 6 1 551 10694835 10695388 0.000000e+00 793
9 TraesCS1B01G070000 chr1A 88.735 1154 99 18 673 1816 34892024 34890892 0.000000e+00 1382
10 TraesCS1B01G070000 chr1A 81.306 1011 148 24 797 1793 34708260 34707277 0.000000e+00 782
11 TraesCS1B01G070000 chr1A 91.489 470 34 5 1 466 34892627 34892160 2.310000e-180 641
12 TraesCS1B01G070000 chr1A 95.420 131 5 1 593 722 34892154 34892024 1.000000e-49 207
13 TraesCS1B01G070000 chr1D 82.438 968 137 21 797 1755 35788973 35788030 0.000000e+00 815
14 TraesCS1B01G070000 chr1D 83.990 787 112 9 975 1755 35927190 35926412 0.000000e+00 743
15 TraesCS1B01G070000 chr5B 97.425 466 11 1 2080 2545 386559781 386559317 0.000000e+00 793
16 TraesCS1B01G070000 chr7B 96.162 469 17 1 2077 2545 705810921 705810454 0.000000e+00 765
17 TraesCS1B01G070000 chr7B 95.966 471 18 1 2075 2545 745229222 745228753 0.000000e+00 763
18 TraesCS1B01G070000 chr7B 95.923 466 18 1 2080 2545 702059911 702060375 0.000000e+00 754
19 TraesCS1B01G070000 chr4B 96.352 466 16 1 2080 2545 93512221 93511757 0.000000e+00 765
20 TraesCS1B01G070000 chr2A 95.426 481 20 2 2078 2557 36046493 36046014 0.000000e+00 765
21 TraesCS1B01G070000 chr3B 95.949 469 17 2 2077 2545 756313712 756313246 0.000000e+00 760
22 TraesCS1B01G070000 chr3A 96.137 466 17 1 2080 2545 28571379 28571843 0.000000e+00 760
23 TraesCS1B01G070000 chr6B 92.828 488 28 6 2059 2545 180518350 180517869 0.000000e+00 701


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G070000 chr1B 55204428 55207182 2754 True 5088.000000 5088 100.000000 1 2755 1 chr1B.!!$R3 2754
1 TraesCS1B01G070000 chr1B 55016327 55017891 1564 True 1657.000000 1657 85.723000 194 1838 1 chr1B.!!$R2 1644
2 TraesCS1B01G070000 chr1B 54977796 54979338 1542 True 1572.000000 1572 85.043000 209 1838 1 chr1B.!!$R1 1629
3 TraesCS1B01G070000 chr1B 55240475 55243138 2663 True 1445.000000 2329 98.437333 1 2755 3 chr1B.!!$R4 2754
4 TraesCS1B01G070000 chrUn 10694835 10696628 1793 False 1162.000000 1531 90.899000 1 1838 2 chrUn.!!$F2 1837
5 TraesCS1B01G070000 chrUn 10650630 10651741 1111 False 1072.000000 1072 84.187000 633 1755 1 chrUn.!!$F1 1122
6 TraesCS1B01G070000 chr1A 34707277 34708260 983 True 782.000000 782 81.306000 797 1793 1 chr1A.!!$R1 996
7 TraesCS1B01G070000 chr1A 34890892 34892627 1735 True 743.333333 1382 91.881333 1 1816 3 chr1A.!!$R2 1815
8 TraesCS1B01G070000 chr1D 35788030 35788973 943 True 815.000000 815 82.438000 797 1755 1 chr1D.!!$R1 958
9 TraesCS1B01G070000 chr1D 35926412 35927190 778 True 743.000000 743 83.990000 975 1755 1 chr1D.!!$R2 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 589 0.397816 TGGTTTTTCAGGTGGGGTGG 60.398 55.0 0.0 0.0 0.0 4.61 F
584 590 1.118965 GGTTTTTCAGGTGGGGTGGG 61.119 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1654 0.178947 GGTGGGTTTTGACCATGGGA 60.179 55.0 18.09 0.0 40.7 4.37 R
2155 2416 0.247695 GCCGTAGCGTCTGATTTTGC 60.248 55.0 0.00 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 177 4.232221 TCGTGTGATTTTCGGTCTAGTTC 58.768 43.478 0.00 0.00 0.00 3.01
576 582 6.706295 TGTTCAAAGAAATGGTTTTTCAGGT 58.294 32.000 1.41 0.00 0.00 4.00
577 583 6.593382 TGTTCAAAGAAATGGTTTTTCAGGTG 59.407 34.615 1.41 0.00 0.00 4.00
578 584 5.669477 TCAAAGAAATGGTTTTTCAGGTGG 58.331 37.500 1.41 0.00 0.00 4.61
579 585 4.687901 AAGAAATGGTTTTTCAGGTGGG 57.312 40.909 1.41 0.00 0.00 4.61
580 586 2.972021 AGAAATGGTTTTTCAGGTGGGG 59.028 45.455 1.41 0.00 0.00 4.96
581 587 2.487746 AATGGTTTTTCAGGTGGGGT 57.512 45.000 0.00 0.00 0.00 4.95
582 588 1.715785 ATGGTTTTTCAGGTGGGGTG 58.284 50.000 0.00 0.00 0.00 4.61
583 589 0.397816 TGGTTTTTCAGGTGGGGTGG 60.398 55.000 0.00 0.00 0.00 4.61
584 590 1.118965 GGTTTTTCAGGTGGGGTGGG 61.119 60.000 0.00 0.00 0.00 4.61
585 591 1.118965 GTTTTTCAGGTGGGGTGGGG 61.119 60.000 0.00 0.00 0.00 4.96
586 592 1.595058 TTTTTCAGGTGGGGTGGGGT 61.595 55.000 0.00 0.00 0.00 4.95
587 593 2.305314 TTTTCAGGTGGGGTGGGGTG 62.305 60.000 0.00 0.00 0.00 4.61
923 1163 4.139786 AGCATCACAAGTTCACAACTCAT 58.860 39.130 0.00 0.00 41.91 2.90
1275 1525 2.028930 ACTGCCTTGGTAGAAGACTTCG 60.029 50.000 11.60 0.00 34.02 3.79
1361 1611 2.815211 GTCGCGCAGATTGCTGGA 60.815 61.111 8.75 0.00 42.25 3.86
1404 1654 3.065786 CCTTGCTCGTGTTGATTATGCAT 59.934 43.478 3.79 3.79 0.00 3.96
1703 1953 8.807118 TCCATCTCAGATGATATACTTACCAAC 58.193 37.037 16.90 0.00 0.00 3.77
1930 2191 5.452078 TTTTCTTTGCCAGTCACCTATTG 57.548 39.130 0.00 0.00 0.00 1.90
1931 2192 3.788227 TCTTTGCCAGTCACCTATTGT 57.212 42.857 0.00 0.00 0.00 2.71
1932 2193 4.098914 TCTTTGCCAGTCACCTATTGTT 57.901 40.909 0.00 0.00 0.00 2.83
1933 2194 5.235850 TCTTTGCCAGTCACCTATTGTTA 57.764 39.130 0.00 0.00 0.00 2.41
1934 2195 5.626142 TCTTTGCCAGTCACCTATTGTTAA 58.374 37.500 0.00 0.00 0.00 2.01
1935 2196 6.245408 TCTTTGCCAGTCACCTATTGTTAAT 58.755 36.000 0.00 0.00 0.00 1.40
1936 2197 6.719370 TCTTTGCCAGTCACCTATTGTTAATT 59.281 34.615 0.00 0.00 0.00 1.40
1937 2198 5.895636 TGCCAGTCACCTATTGTTAATTG 57.104 39.130 0.00 0.00 0.00 2.32
1938 2199 5.321102 TGCCAGTCACCTATTGTTAATTGT 58.679 37.500 0.00 0.00 0.00 2.71
1939 2200 5.772672 TGCCAGTCACCTATTGTTAATTGTT 59.227 36.000 0.00 0.00 0.00 2.83
1940 2201 6.092748 GCCAGTCACCTATTGTTAATTGTTG 58.907 40.000 0.00 0.00 0.00 3.33
1941 2202 6.294508 GCCAGTCACCTATTGTTAATTGTTGT 60.295 38.462 0.00 0.00 0.00 3.32
1942 2203 7.657336 CCAGTCACCTATTGTTAATTGTTGTT 58.343 34.615 0.00 0.00 0.00 2.83
1943 2204 7.594758 CCAGTCACCTATTGTTAATTGTTGTTG 59.405 37.037 0.00 0.00 0.00 3.33
1944 2205 7.594758 CAGTCACCTATTGTTAATTGTTGTTGG 59.405 37.037 0.00 0.00 0.00 3.77
1945 2206 7.504238 AGTCACCTATTGTTAATTGTTGTTGGA 59.496 33.333 0.00 0.00 0.00 3.53
1946 2207 8.303876 GTCACCTATTGTTAATTGTTGTTGGAT 58.696 33.333 0.00 0.00 0.00 3.41
1947 2208 8.865090 TCACCTATTGTTAATTGTTGTTGGATT 58.135 29.630 0.00 0.00 0.00 3.01
1953 2214 8.755696 TTGTTAATTGTTGTTGGATTATGCTC 57.244 30.769 0.00 0.00 0.00 4.26
1954 2215 7.890515 TGTTAATTGTTGTTGGATTATGCTCA 58.109 30.769 0.00 0.00 0.00 4.26
1955 2216 8.363390 TGTTAATTGTTGTTGGATTATGCTCAA 58.637 29.630 0.00 0.00 0.00 3.02
1956 2217 8.647226 GTTAATTGTTGTTGGATTATGCTCAAC 58.353 33.333 13.94 13.94 40.59 3.18
1957 2218 4.418013 TGTTGTTGGATTATGCTCAACG 57.582 40.909 15.01 0.00 42.41 4.10
1958 2219 3.190327 TGTTGTTGGATTATGCTCAACGG 59.810 43.478 15.01 0.00 42.41 4.44
1959 2220 3.066291 TGTTGGATTATGCTCAACGGT 57.934 42.857 0.00 0.00 42.41 4.83
1960 2221 4.209307 TGTTGGATTATGCTCAACGGTA 57.791 40.909 0.00 0.00 42.41 4.02
1961 2222 4.776349 TGTTGGATTATGCTCAACGGTAT 58.224 39.130 0.00 0.00 42.41 2.73
1962 2223 5.189928 TGTTGGATTATGCTCAACGGTATT 58.810 37.500 0.00 0.00 42.41 1.89
1963 2224 5.065859 TGTTGGATTATGCTCAACGGTATTG 59.934 40.000 0.00 0.00 42.41 1.90
1964 2225 4.776349 TGGATTATGCTCAACGGTATTGT 58.224 39.130 0.00 0.00 0.00 2.71
1965 2226 4.574421 TGGATTATGCTCAACGGTATTGTG 59.426 41.667 0.00 0.00 0.00 3.33
1966 2227 4.024048 GGATTATGCTCAACGGTATTGTGG 60.024 45.833 0.00 0.00 0.00 4.17
1967 2228 2.779755 ATGCTCAACGGTATTGTGGA 57.220 45.000 0.00 0.00 0.00 4.02
1968 2229 2.552599 TGCTCAACGGTATTGTGGAA 57.447 45.000 0.00 0.00 0.00 3.53
1969 2230 3.066291 TGCTCAACGGTATTGTGGAAT 57.934 42.857 0.00 0.00 0.00 3.01
1970 2231 3.417101 TGCTCAACGGTATTGTGGAATT 58.583 40.909 0.00 0.00 0.00 2.17
1971 2232 3.823873 TGCTCAACGGTATTGTGGAATTT 59.176 39.130 0.00 0.00 0.00 1.82
1972 2233 4.279671 TGCTCAACGGTATTGTGGAATTTT 59.720 37.500 0.00 0.00 0.00 1.82
1973 2234 5.473846 TGCTCAACGGTATTGTGGAATTTTA 59.526 36.000 0.00 0.00 0.00 1.52
1974 2235 6.151985 TGCTCAACGGTATTGTGGAATTTTAT 59.848 34.615 0.00 0.00 0.00 1.40
1975 2236 7.337184 TGCTCAACGGTATTGTGGAATTTTATA 59.663 33.333 0.00 0.00 0.00 0.98
1976 2237 8.349983 GCTCAACGGTATTGTGGAATTTTATAT 58.650 33.333 0.00 0.00 0.00 0.86
1977 2238 9.663904 CTCAACGGTATTGTGGAATTTTATATG 57.336 33.333 0.00 0.00 0.00 1.78
1978 2239 8.132362 TCAACGGTATTGTGGAATTTTATATGC 58.868 33.333 0.00 0.00 0.00 3.14
1979 2240 6.977213 ACGGTATTGTGGAATTTTATATGCC 58.023 36.000 0.00 0.00 0.00 4.40
1980 2241 6.547880 ACGGTATTGTGGAATTTTATATGCCA 59.452 34.615 0.00 0.00 0.00 4.92
1981 2242 7.083858 CGGTATTGTGGAATTTTATATGCCAG 58.916 38.462 0.00 0.00 0.00 4.85
1982 2243 7.255451 CGGTATTGTGGAATTTTATATGCCAGT 60.255 37.037 0.00 0.00 0.00 4.00
1983 2244 8.082242 GGTATTGTGGAATTTTATATGCCAGTC 58.918 37.037 0.00 0.00 0.00 3.51
1984 2245 7.658525 ATTGTGGAATTTTATATGCCAGTCA 57.341 32.000 0.00 0.00 0.00 3.41
1985 2246 6.698008 TGTGGAATTTTATATGCCAGTCAG 57.302 37.500 0.00 0.00 0.00 3.51
1986 2247 5.593909 TGTGGAATTTTATATGCCAGTCAGG 59.406 40.000 0.00 0.00 41.84 3.86
1987 2248 5.827797 GTGGAATTTTATATGCCAGTCAGGA 59.172 40.000 0.00 0.00 41.22 3.86
1988 2249 5.827797 TGGAATTTTATATGCCAGTCAGGAC 59.172 40.000 0.00 0.00 41.22 3.85
1989 2250 5.827797 GGAATTTTATATGCCAGTCAGGACA 59.172 40.000 1.84 0.00 41.22 4.02
1990 2251 6.491403 GGAATTTTATATGCCAGTCAGGACAT 59.509 38.462 1.84 0.00 41.22 3.06
1991 2252 7.665559 GGAATTTTATATGCCAGTCAGGACATA 59.334 37.037 1.84 0.00 41.22 2.29
1992 2253 8.627208 AATTTTATATGCCAGTCAGGACATAG 57.373 34.615 1.84 0.00 38.71 2.23
1993 2254 5.745312 TTATATGCCAGTCAGGACATAGG 57.255 43.478 1.84 2.19 38.71 2.57
1994 2255 1.885049 ATGCCAGTCAGGACATAGGT 58.115 50.000 1.84 0.00 41.22 3.08
1995 2256 1.656587 TGCCAGTCAGGACATAGGTT 58.343 50.000 1.84 0.00 41.22 3.50
1996 2257 2.827755 TGCCAGTCAGGACATAGGTTA 58.172 47.619 1.84 0.00 41.22 2.85
1997 2258 3.384168 TGCCAGTCAGGACATAGGTTAT 58.616 45.455 1.84 0.00 41.22 1.89
1998 2259 3.134623 TGCCAGTCAGGACATAGGTTATG 59.865 47.826 1.84 0.00 41.22 1.90
2022 2283 8.690680 TGTTATACCGAAAAATATGTTTTGCC 57.309 30.769 0.51 0.00 37.59 4.52
2023 2284 8.524487 TGTTATACCGAAAAATATGTTTTGCCT 58.476 29.630 0.51 0.00 37.59 4.75
2027 2288 7.646446 ACCGAAAAATATGTTTTGCCTAAAC 57.354 32.000 0.51 4.97 45.17 2.01
2045 2306 9.407380 TGCCTAAACATGATATTATTCAACAGT 57.593 29.630 0.00 0.00 0.00 3.55
2081 2342 3.883830 TTTTTGCTGCAGAAAGACCAA 57.116 38.095 20.43 8.06 0.00 3.67
2082 2343 4.405116 TTTTTGCTGCAGAAAGACCAAT 57.595 36.364 20.43 0.00 0.00 3.16
2083 2344 5.528043 TTTTTGCTGCAGAAAGACCAATA 57.472 34.783 20.43 3.27 0.00 1.90
2084 2345 5.726980 TTTTGCTGCAGAAAGACCAATAT 57.273 34.783 20.43 0.00 0.00 1.28
2085 2346 5.726980 TTTGCTGCAGAAAGACCAATATT 57.273 34.783 20.43 0.00 0.00 1.28
2086 2347 5.726980 TTGCTGCAGAAAGACCAATATTT 57.273 34.783 20.43 0.00 0.00 1.40
2087 2348 5.726980 TGCTGCAGAAAGACCAATATTTT 57.273 34.783 20.43 0.00 0.00 1.82
2088 2349 6.832520 TGCTGCAGAAAGACCAATATTTTA 57.167 33.333 20.43 0.00 0.00 1.52
2089 2350 7.225784 TGCTGCAGAAAGACCAATATTTTAA 57.774 32.000 20.43 0.00 0.00 1.52
2090 2351 7.665690 TGCTGCAGAAAGACCAATATTTTAAA 58.334 30.769 20.43 0.00 0.00 1.52
2091 2352 8.313292 TGCTGCAGAAAGACCAATATTTTAAAT 58.687 29.630 20.43 0.00 0.00 1.40
2092 2353 9.801873 GCTGCAGAAAGACCAATATTTTAAATA 57.198 29.630 20.43 0.00 0.00 1.40
2094 2355 9.801873 TGCAGAAAGACCAATATTTTAAATAGC 57.198 29.630 3.73 0.00 0.00 2.97
2095 2356 9.801873 GCAGAAAGACCAATATTTTAAATAGCA 57.198 29.630 3.73 0.00 0.00 3.49
2098 2359 8.628882 AAAGACCAATATTTTAAATAGCACGC 57.371 30.769 3.73 0.00 0.00 5.34
2099 2360 7.568199 AGACCAATATTTTAAATAGCACGCT 57.432 32.000 3.73 0.00 0.00 5.07
2100 2361 8.671384 AGACCAATATTTTAAATAGCACGCTA 57.329 30.769 0.39 0.39 0.00 4.26
2101 2362 9.284968 AGACCAATATTTTAAATAGCACGCTAT 57.715 29.630 5.72 5.72 40.63 2.97
2108 2369 0.859232 AATAGCACGCTATTTCGCCG 59.141 50.000 16.70 0.00 44.18 6.46
2109 2370 0.249322 ATAGCACGCTATTTCGCCGT 60.249 50.000 5.72 0.00 35.92 5.68
2110 2371 0.458889 TAGCACGCTATTTCGCCGTT 60.459 50.000 0.00 0.00 32.18 4.44
2111 2372 0.458889 AGCACGCTATTTCGCCGTTA 60.459 50.000 0.00 0.00 32.18 3.18
2112 2373 0.580104 GCACGCTATTTCGCCGTTAT 59.420 50.000 0.00 0.00 32.18 1.89
2113 2374 1.788308 GCACGCTATTTCGCCGTTATA 59.212 47.619 0.00 0.00 32.18 0.98
2114 2375 2.219216 GCACGCTATTTCGCCGTTATAA 59.781 45.455 0.00 0.00 32.18 0.98
2115 2376 3.780054 CACGCTATTTCGCCGTTATAAC 58.220 45.455 5.47 5.47 32.18 1.89
2130 2391 6.801367 CGTTATAACGCGGTTATAGCATAT 57.199 37.500 23.72 6.58 46.06 1.78
2131 2392 7.213252 CGTTATAACGCGGTTATAGCATATT 57.787 36.000 23.72 6.01 46.06 1.28
2132 2393 7.669098 CGTTATAACGCGGTTATAGCATATTT 58.331 34.615 23.72 5.86 46.06 1.40
2133 2394 7.629465 CGTTATAACGCGGTTATAGCATATTTG 59.371 37.037 23.72 10.45 46.06 2.32
2134 2395 4.742438 AACGCGGTTATAGCATATTTGG 57.258 40.909 12.47 0.00 34.19 3.28
2135 2396 3.997762 ACGCGGTTATAGCATATTTGGA 58.002 40.909 12.47 0.00 34.19 3.53
2136 2397 4.382291 ACGCGGTTATAGCATATTTGGAA 58.618 39.130 12.47 0.00 34.19 3.53
2137 2398 4.451096 ACGCGGTTATAGCATATTTGGAAG 59.549 41.667 12.47 0.00 34.19 3.46
2138 2399 4.142902 CGCGGTTATAGCATATTTGGAAGG 60.143 45.833 0.00 0.00 34.19 3.46
2139 2400 4.156008 GCGGTTATAGCATATTTGGAAGGG 59.844 45.833 0.00 0.00 34.19 3.95
2140 2401 5.556915 CGGTTATAGCATATTTGGAAGGGA 58.443 41.667 0.00 0.00 0.00 4.20
2141 2402 5.643777 CGGTTATAGCATATTTGGAAGGGAG 59.356 44.000 0.00 0.00 0.00 4.30
2142 2403 6.520061 CGGTTATAGCATATTTGGAAGGGAGA 60.520 42.308 0.00 0.00 0.00 3.71
2143 2404 6.655425 GGTTATAGCATATTTGGAAGGGAGAC 59.345 42.308 0.00 0.00 0.00 3.36
2144 2405 3.199880 AGCATATTTGGAAGGGAGACG 57.800 47.619 0.00 0.00 0.00 4.18
2145 2406 2.505819 AGCATATTTGGAAGGGAGACGT 59.494 45.455 0.00 0.00 0.00 4.34
2146 2407 3.054361 AGCATATTTGGAAGGGAGACGTT 60.054 43.478 0.00 0.00 42.01 3.99
2147 2408 4.163458 AGCATATTTGGAAGGGAGACGTTA 59.837 41.667 0.00 0.00 38.82 3.18
2148 2409 4.272748 GCATATTTGGAAGGGAGACGTTAC 59.727 45.833 0.00 0.00 38.82 2.50
2149 2410 2.443887 TTTGGAAGGGAGACGTTACG 57.556 50.000 2.19 2.19 42.05 3.18
2150 2411 1.331214 TTGGAAGGGAGACGTTACGT 58.669 50.000 11.12 11.12 42.05 3.57
2151 2412 1.331214 TGGAAGGGAGACGTTACGTT 58.669 50.000 12.82 1.89 42.05 3.99
2152 2413 1.688197 TGGAAGGGAGACGTTACGTTT 59.312 47.619 12.82 6.17 42.05 3.60
2153 2414 2.102925 TGGAAGGGAGACGTTACGTTTT 59.897 45.455 12.82 3.52 42.05 2.43
2154 2415 2.477754 GGAAGGGAGACGTTACGTTTTG 59.522 50.000 12.82 0.00 41.37 2.44
2155 2416 2.159327 AGGGAGACGTTACGTTTTGG 57.841 50.000 12.82 0.00 41.37 3.28
2156 2417 0.514255 GGGAGACGTTACGTTTTGGC 59.486 55.000 12.82 0.00 41.37 4.52
2157 2418 1.219646 GGAGACGTTACGTTTTGGCA 58.780 50.000 12.82 0.00 41.37 4.92
2158 2419 1.598601 GGAGACGTTACGTTTTGGCAA 59.401 47.619 12.82 0.00 41.37 4.52
2159 2420 2.031930 GGAGACGTTACGTTTTGGCAAA 59.968 45.455 12.82 8.93 41.37 3.68
2160 2421 3.487209 GGAGACGTTACGTTTTGGCAAAA 60.487 43.478 20.81 20.81 41.37 2.44
2161 2422 4.284485 GAGACGTTACGTTTTGGCAAAAT 58.716 39.130 26.41 15.14 41.37 1.82
2162 2423 4.284485 AGACGTTACGTTTTGGCAAAATC 58.716 39.130 26.41 17.74 41.37 2.17
2163 2424 4.030134 ACGTTACGTTTTGGCAAAATCA 57.970 36.364 26.41 12.94 36.35 2.57
2164 2425 4.039032 ACGTTACGTTTTGGCAAAATCAG 58.961 39.130 26.41 21.40 36.35 2.90
2165 2426 4.201930 ACGTTACGTTTTGGCAAAATCAGA 60.202 37.500 26.41 11.98 36.35 3.27
2166 2427 4.145756 CGTTACGTTTTGGCAAAATCAGAC 59.854 41.667 26.41 20.03 32.22 3.51
2167 2428 2.726633 ACGTTTTGGCAAAATCAGACG 58.273 42.857 26.41 25.31 34.26 4.18
2168 2429 1.451651 CGTTTTGGCAAAATCAGACGC 59.548 47.619 26.41 11.96 32.22 5.19
2169 2430 2.742774 GTTTTGGCAAAATCAGACGCT 58.257 42.857 26.41 0.00 32.22 5.07
2170 2431 3.608241 CGTTTTGGCAAAATCAGACGCTA 60.608 43.478 26.41 0.00 32.22 4.26
2171 2432 3.552604 TTTGGCAAAATCAGACGCTAC 57.447 42.857 10.83 0.00 0.00 3.58
2172 2433 1.075542 TGGCAAAATCAGACGCTACG 58.924 50.000 0.00 0.00 0.00 3.51
2173 2434 0.373716 GGCAAAATCAGACGCTACGG 59.626 55.000 0.00 0.00 0.00 4.02
2174 2435 0.247695 GCAAAATCAGACGCTACGGC 60.248 55.000 0.00 0.00 33.59 5.68
2267 2528 5.466058 CCATGCAAAACTGAAATAAGCACAA 59.534 36.000 0.00 0.00 32.92 3.33
2282 2543 4.290622 CAACCCAGCAGGCCCAGT 62.291 66.667 0.00 0.00 40.58 4.00
2308 2569 1.892209 AAACCAACCCACGATCACTC 58.108 50.000 0.00 0.00 0.00 3.51
2328 2589 5.062809 CACTCGCTTTCTCACTCCTTTTATC 59.937 44.000 0.00 0.00 0.00 1.75
2336 2597 9.097257 CTTTCTCACTCCTTTTATCAGATTCTC 57.903 37.037 0.00 0.00 0.00 2.87
2588 2849 3.089982 GTTCGATCTTACACTCGTCGTC 58.910 50.000 0.00 0.00 36.33 4.20
2610 2871 2.746279 ACAATGTCCACTTTCCCACA 57.254 45.000 0.00 0.00 0.00 4.17
2659 2920 3.044305 GCTATCGACCGCCCATGC 61.044 66.667 0.00 0.00 0.00 4.06
2660 2921 2.421314 CTATCGACCGCCCATGCA 59.579 61.111 0.00 0.00 37.32 3.96
2661 2922 1.004560 CTATCGACCGCCCATGCAT 60.005 57.895 0.00 0.00 37.32 3.96
2662 2923 1.293963 CTATCGACCGCCCATGCATG 61.294 60.000 20.19 20.19 37.32 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 4.021544 CCTCTATGTGGATAGAAGTGAGCC 60.022 50.000 0.00 0.00 40.10 4.70
172 177 1.467678 TTGGCCCGGTTCAAATGGTG 61.468 55.000 0.00 0.00 0.00 4.17
229 234 6.072112 TCACAAGAAAAATTGTCACTAGGC 57.928 37.500 0.00 0.00 41.41 3.93
597 603 1.502163 GAGTGCTCCCATGCATACGC 61.502 60.000 0.00 0.05 45.23 4.42
704 927 8.383318 ACTAATCATAGTTGTGTATTCATGGC 57.617 34.615 0.00 0.00 39.36 4.40
923 1163 4.082845 AGAGCTGTGCAGACTAGTTCTTA 58.917 43.478 0.00 0.00 29.31 2.10
1275 1525 0.250513 ATGTGAAGCCCCGAGAAGAC 59.749 55.000 0.00 0.00 0.00 3.01
1283 1533 2.757099 CCAGCCATGTGAAGCCCC 60.757 66.667 0.00 0.00 0.00 5.80
1361 1611 2.827921 GGAGATGCCCAAAGTGTTCAAT 59.172 45.455 0.00 0.00 0.00 2.57
1404 1654 0.178947 GGTGGGTTTTGACCATGGGA 60.179 55.000 18.09 0.00 40.70 4.37
1930 2191 8.647226 GTTGAGCATAATCCAACAACAATTAAC 58.353 33.333 0.00 0.00 0.00 2.01
1931 2192 7.540400 CGTTGAGCATAATCCAACAACAATTAA 59.460 33.333 0.00 0.00 0.00 1.40
1932 2193 7.026562 CGTTGAGCATAATCCAACAACAATTA 58.973 34.615 0.00 0.00 0.00 1.40
1933 2194 5.863397 CGTTGAGCATAATCCAACAACAATT 59.137 36.000 0.00 0.00 0.00 2.32
1934 2195 5.401550 CGTTGAGCATAATCCAACAACAAT 58.598 37.500 0.00 0.00 0.00 2.71
1935 2196 4.320861 CCGTTGAGCATAATCCAACAACAA 60.321 41.667 0.00 0.00 0.00 2.83
1936 2197 3.190327 CCGTTGAGCATAATCCAACAACA 59.810 43.478 0.00 0.00 0.00 3.33
1937 2198 3.190535 ACCGTTGAGCATAATCCAACAAC 59.809 43.478 0.00 0.00 0.00 3.32
1938 2199 3.417101 ACCGTTGAGCATAATCCAACAA 58.583 40.909 0.00 0.00 0.00 2.83
1939 2200 3.066291 ACCGTTGAGCATAATCCAACA 57.934 42.857 0.00 0.00 0.00 3.33
1940 2201 5.065988 ACAATACCGTTGAGCATAATCCAAC 59.934 40.000 0.00 0.00 0.00 3.77
1941 2202 5.065859 CACAATACCGTTGAGCATAATCCAA 59.934 40.000 0.00 0.00 0.00 3.53
1942 2203 4.574421 CACAATACCGTTGAGCATAATCCA 59.426 41.667 0.00 0.00 0.00 3.41
1943 2204 4.024048 CCACAATACCGTTGAGCATAATCC 60.024 45.833 0.00 0.00 0.00 3.01
1944 2205 4.814234 TCCACAATACCGTTGAGCATAATC 59.186 41.667 0.00 0.00 0.00 1.75
1945 2206 4.776349 TCCACAATACCGTTGAGCATAAT 58.224 39.130 0.00 0.00 0.00 1.28
1946 2207 4.209307 TCCACAATACCGTTGAGCATAA 57.791 40.909 0.00 0.00 0.00 1.90
1947 2208 3.897141 TCCACAATACCGTTGAGCATA 57.103 42.857 0.00 0.00 0.00 3.14
1948 2209 2.779755 TCCACAATACCGTTGAGCAT 57.220 45.000 0.00 0.00 0.00 3.79
1949 2210 2.552599 TTCCACAATACCGTTGAGCA 57.447 45.000 0.00 0.00 0.00 4.26
1950 2211 4.434713 AAATTCCACAATACCGTTGAGC 57.565 40.909 0.00 0.00 0.00 4.26
1951 2212 9.663904 CATATAAAATTCCACAATACCGTTGAG 57.336 33.333 0.00 0.00 0.00 3.02
1952 2213 8.132362 GCATATAAAATTCCACAATACCGTTGA 58.868 33.333 0.00 0.00 0.00 3.18
1953 2214 7.381139 GGCATATAAAATTCCACAATACCGTTG 59.619 37.037 0.00 0.00 0.00 4.10
1954 2215 7.068839 TGGCATATAAAATTCCACAATACCGTT 59.931 33.333 0.00 0.00 0.00 4.44
1955 2216 6.547880 TGGCATATAAAATTCCACAATACCGT 59.452 34.615 0.00 0.00 0.00 4.83
1956 2217 6.976088 TGGCATATAAAATTCCACAATACCG 58.024 36.000 0.00 0.00 0.00 4.02
1957 2218 7.951591 ACTGGCATATAAAATTCCACAATACC 58.048 34.615 0.00 0.00 0.00 2.73
1958 2219 8.629158 TGACTGGCATATAAAATTCCACAATAC 58.371 33.333 0.00 0.00 0.00 1.89
1959 2220 8.759481 TGACTGGCATATAAAATTCCACAATA 57.241 30.769 0.00 0.00 0.00 1.90
1960 2221 7.201938 CCTGACTGGCATATAAAATTCCACAAT 60.202 37.037 0.00 0.00 0.00 2.71
1961 2222 6.096705 CCTGACTGGCATATAAAATTCCACAA 59.903 38.462 0.00 0.00 0.00 3.33
1962 2223 5.593909 CCTGACTGGCATATAAAATTCCACA 59.406 40.000 0.00 0.00 0.00 4.17
1963 2224 5.827797 TCCTGACTGGCATATAAAATTCCAC 59.172 40.000 0.00 0.00 35.26 4.02
1964 2225 5.827797 GTCCTGACTGGCATATAAAATTCCA 59.172 40.000 0.00 0.00 35.26 3.53
1965 2226 5.827797 TGTCCTGACTGGCATATAAAATTCC 59.172 40.000 0.00 0.00 35.26 3.01
1966 2227 6.942532 TGTCCTGACTGGCATATAAAATTC 57.057 37.500 0.00 0.00 35.26 2.17
1967 2228 7.667219 CCTATGTCCTGACTGGCATATAAAATT 59.333 37.037 12.49 0.00 35.69 1.82
1968 2229 7.170965 CCTATGTCCTGACTGGCATATAAAAT 58.829 38.462 12.49 0.00 35.69 1.82
1969 2230 6.101150 ACCTATGTCCTGACTGGCATATAAAA 59.899 38.462 12.49 0.00 35.69 1.52
1970 2231 5.606749 ACCTATGTCCTGACTGGCATATAAA 59.393 40.000 12.49 0.00 35.69 1.40
1971 2232 5.155161 ACCTATGTCCTGACTGGCATATAA 58.845 41.667 12.49 0.00 35.69 0.98
1972 2233 4.752063 ACCTATGTCCTGACTGGCATATA 58.248 43.478 12.49 3.86 35.69 0.86
1973 2234 3.591789 ACCTATGTCCTGACTGGCATAT 58.408 45.455 12.49 3.12 35.69 1.78
1974 2235 3.046283 ACCTATGTCCTGACTGGCATA 57.954 47.619 11.91 11.91 35.36 3.14
1975 2236 1.885049 ACCTATGTCCTGACTGGCAT 58.115 50.000 11.16 11.16 36.80 4.40
1976 2237 1.656587 AACCTATGTCCTGACTGGCA 58.343 50.000 0.00 0.00 35.26 4.92
1977 2238 3.134804 ACATAACCTATGTCCTGACTGGC 59.865 47.826 0.00 0.00 45.83 4.85
1996 2257 9.308318 GGCAAAACATATTTTTCGGTATAACAT 57.692 29.630 0.00 0.00 35.79 2.71
1997 2258 8.524487 AGGCAAAACATATTTTTCGGTATAACA 58.476 29.630 0.00 0.00 35.79 2.41
1998 2259 8.920509 AGGCAAAACATATTTTTCGGTATAAC 57.079 30.769 0.00 0.00 35.79 1.89
2001 2262 9.361315 GTTTAGGCAAAACATATTTTTCGGTAT 57.639 29.630 8.56 0.00 45.72 2.73
2002 2263 8.745464 GTTTAGGCAAAACATATTTTTCGGTA 57.255 30.769 8.56 0.00 45.72 4.02
2003 2264 7.646446 GTTTAGGCAAAACATATTTTTCGGT 57.354 32.000 8.56 0.00 45.72 4.69
2019 2280 9.407380 ACTGTTGAATAATATCATGTTTAGGCA 57.593 29.630 0.00 0.00 0.00 4.75
2061 2322 3.883830 TTGGTCTTTCTGCAGCAAAAA 57.116 38.095 9.47 3.75 0.00 1.94
2062 2323 5.726980 ATATTGGTCTTTCTGCAGCAAAA 57.273 34.783 9.47 4.53 33.91 2.44
2063 2324 5.726980 AATATTGGTCTTTCTGCAGCAAA 57.273 34.783 9.47 9.71 33.91 3.68
2064 2325 5.726980 AAATATTGGTCTTTCTGCAGCAA 57.273 34.783 9.47 3.11 34.66 3.91
2065 2326 5.726980 AAAATATTGGTCTTTCTGCAGCA 57.273 34.783 9.47 0.00 0.00 4.41
2066 2327 8.707938 ATTTAAAATATTGGTCTTTCTGCAGC 57.292 30.769 9.47 0.00 0.00 5.25
2068 2329 9.801873 GCTATTTAAAATATTGGTCTTTCTGCA 57.198 29.630 0.00 0.00 0.00 4.41
2069 2330 9.801873 TGCTATTTAAAATATTGGTCTTTCTGC 57.198 29.630 0.00 0.00 0.00 4.26
2072 2333 8.743099 GCGTGCTATTTAAAATATTGGTCTTTC 58.257 33.333 0.00 0.00 0.00 2.62
2073 2334 8.466798 AGCGTGCTATTTAAAATATTGGTCTTT 58.533 29.630 0.00 0.00 0.00 2.52
2074 2335 7.996385 AGCGTGCTATTTAAAATATTGGTCTT 58.004 30.769 0.00 0.00 0.00 3.01
2075 2336 7.568199 AGCGTGCTATTTAAAATATTGGTCT 57.432 32.000 0.00 0.00 0.00 3.85
2076 2337 9.893305 AATAGCGTGCTATTTAAAATATTGGTC 57.107 29.630 18.83 0.00 44.18 4.02
2090 2351 0.249322 ACGGCGAAATAGCGTGCTAT 60.249 50.000 16.62 8.54 40.63 2.97
2091 2352 0.458889 AACGGCGAAATAGCGTGCTA 60.459 50.000 16.62 3.73 38.18 3.49
2092 2353 0.458889 TAACGGCGAAATAGCGTGCT 60.459 50.000 16.62 0.00 38.18 4.40
2093 2354 0.580104 ATAACGGCGAAATAGCGTGC 59.420 50.000 16.62 0.00 38.18 5.34
2094 2355 3.780054 GTTATAACGGCGAAATAGCGTG 58.220 45.455 16.62 0.00 38.18 5.34
2108 2369 7.901377 CCAAATATGCTATAACCGCGTTATAAC 59.099 37.037 4.92 5.47 39.49 1.89
2109 2370 7.818446 TCCAAATATGCTATAACCGCGTTATAA 59.182 33.333 4.92 1.10 39.49 0.98
2110 2371 7.321908 TCCAAATATGCTATAACCGCGTTATA 58.678 34.615 4.92 12.18 39.18 0.98
2111 2372 6.167685 TCCAAATATGCTATAACCGCGTTAT 58.832 36.000 4.92 11.68 41.02 1.89
2112 2373 5.539979 TCCAAATATGCTATAACCGCGTTA 58.460 37.500 4.92 4.43 32.36 3.18
2113 2374 4.382291 TCCAAATATGCTATAACCGCGTT 58.618 39.130 4.92 1.95 0.00 4.84
2114 2375 3.997762 TCCAAATATGCTATAACCGCGT 58.002 40.909 4.92 0.00 0.00 6.01
2115 2376 4.142902 CCTTCCAAATATGCTATAACCGCG 60.143 45.833 0.00 0.00 0.00 6.46
2116 2377 4.156008 CCCTTCCAAATATGCTATAACCGC 59.844 45.833 0.00 0.00 0.00 5.68
2117 2378 5.556915 TCCCTTCCAAATATGCTATAACCG 58.443 41.667 0.00 0.00 0.00 4.44
2118 2379 6.655425 GTCTCCCTTCCAAATATGCTATAACC 59.345 42.308 0.00 0.00 0.00 2.85
2119 2380 6.369065 CGTCTCCCTTCCAAATATGCTATAAC 59.631 42.308 0.00 0.00 0.00 1.89
2120 2381 6.042781 ACGTCTCCCTTCCAAATATGCTATAA 59.957 38.462 0.00 0.00 0.00 0.98
2121 2382 5.542635 ACGTCTCCCTTCCAAATATGCTATA 59.457 40.000 0.00 0.00 0.00 1.31
2122 2383 4.348168 ACGTCTCCCTTCCAAATATGCTAT 59.652 41.667 0.00 0.00 0.00 2.97
2123 2384 3.709653 ACGTCTCCCTTCCAAATATGCTA 59.290 43.478 0.00 0.00 0.00 3.49
2124 2385 2.505819 ACGTCTCCCTTCCAAATATGCT 59.494 45.455 0.00 0.00 0.00 3.79
2125 2386 2.919228 ACGTCTCCCTTCCAAATATGC 58.081 47.619 0.00 0.00 0.00 3.14
2126 2387 4.506654 CGTAACGTCTCCCTTCCAAATATG 59.493 45.833 0.00 0.00 0.00 1.78
2127 2388 4.161001 ACGTAACGTCTCCCTTCCAAATAT 59.839 41.667 0.00 0.00 33.69 1.28
2128 2389 3.511146 ACGTAACGTCTCCCTTCCAAATA 59.489 43.478 0.00 0.00 33.69 1.40
2129 2390 2.301009 ACGTAACGTCTCCCTTCCAAAT 59.699 45.455 0.00 0.00 33.69 2.32
2130 2391 1.688197 ACGTAACGTCTCCCTTCCAAA 59.312 47.619 0.00 0.00 33.69 3.28
2131 2392 1.331214 ACGTAACGTCTCCCTTCCAA 58.669 50.000 0.00 0.00 33.69 3.53
2132 2393 1.331214 AACGTAACGTCTCCCTTCCA 58.669 50.000 0.00 0.00 39.99 3.53
2133 2394 2.445565 AAACGTAACGTCTCCCTTCC 57.554 50.000 0.00 0.00 39.99 3.46
2134 2395 2.477754 CCAAAACGTAACGTCTCCCTTC 59.522 50.000 0.00 0.00 39.99 3.46
2135 2396 2.486918 CCAAAACGTAACGTCTCCCTT 58.513 47.619 0.00 0.00 39.99 3.95
2136 2397 1.875157 GCCAAAACGTAACGTCTCCCT 60.875 52.381 0.00 0.00 39.99 4.20
2137 2398 0.514255 GCCAAAACGTAACGTCTCCC 59.486 55.000 0.00 0.00 39.99 4.30
2138 2399 1.219646 TGCCAAAACGTAACGTCTCC 58.780 50.000 0.00 0.00 39.99 3.71
2139 2400 3.322230 TTTGCCAAAACGTAACGTCTC 57.678 42.857 0.00 0.00 39.99 3.36
2140 2401 3.761311 TTTTGCCAAAACGTAACGTCT 57.239 38.095 0.00 0.00 39.99 4.18
2141 2402 4.036352 TGATTTTGCCAAAACGTAACGTC 58.964 39.130 4.45 0.00 39.99 4.34
2142 2403 4.030134 TGATTTTGCCAAAACGTAACGT 57.970 36.364 4.45 0.00 43.97 3.99
2143 2404 4.145756 GTCTGATTTTGCCAAAACGTAACG 59.854 41.667 4.45 0.00 32.37 3.18
2144 2405 4.145756 CGTCTGATTTTGCCAAAACGTAAC 59.854 41.667 4.45 1.66 32.37 2.50
2145 2406 4.283678 CGTCTGATTTTGCCAAAACGTAA 58.716 39.130 4.45 0.00 32.37 3.18
2146 2407 3.850374 GCGTCTGATTTTGCCAAAACGTA 60.850 43.478 4.45 0.00 32.37 3.57
2147 2408 2.726633 CGTCTGATTTTGCCAAAACGT 58.273 42.857 4.45 0.00 32.37 3.99
2148 2409 1.451651 GCGTCTGATTTTGCCAAAACG 59.548 47.619 4.45 5.89 32.37 3.60
2149 2410 2.742774 AGCGTCTGATTTTGCCAAAAC 58.257 42.857 4.45 0.64 32.37 2.43
2150 2411 3.608241 CGTAGCGTCTGATTTTGCCAAAA 60.608 43.478 4.87 4.87 34.41 2.44
2151 2412 2.095969 CGTAGCGTCTGATTTTGCCAAA 60.096 45.455 0.00 0.00 0.00 3.28
2152 2413 1.463056 CGTAGCGTCTGATTTTGCCAA 59.537 47.619 0.00 0.00 0.00 4.52
2153 2414 1.075542 CGTAGCGTCTGATTTTGCCA 58.924 50.000 0.00 0.00 0.00 4.92
2154 2415 0.373716 CCGTAGCGTCTGATTTTGCC 59.626 55.000 0.00 0.00 0.00 4.52
2155 2416 0.247695 GCCGTAGCGTCTGATTTTGC 60.248 55.000 0.00 0.00 0.00 3.68
2156 2417 3.877801 GCCGTAGCGTCTGATTTTG 57.122 52.632 0.00 0.00 0.00 2.44
2167 2428 0.317269 TACGTGATTAGCGCCGTAGC 60.317 55.000 2.29 0.00 34.95 3.58
2168 2429 2.109609 TTACGTGATTAGCGCCGTAG 57.890 50.000 2.29 0.00 37.14 3.51
2169 2430 2.780065 ATTACGTGATTAGCGCCGTA 57.220 45.000 2.29 7.05 34.95 4.02
2170 2431 1.930567 AATTACGTGATTAGCGCCGT 58.069 45.000 2.29 8.23 37.33 5.68
2171 2432 3.683115 CTAATTACGTGATTAGCGCCG 57.317 47.619 22.43 0.84 34.05 6.46
2176 2437 2.724690 AGCGCGCTAATTACGTGATTAG 59.275 45.455 35.79 27.16 43.44 1.73
2177 2438 2.734670 AGCGCGCTAATTACGTGATTA 58.265 42.857 35.79 11.75 43.44 1.75
2178 2439 1.567504 AGCGCGCTAATTACGTGATT 58.432 45.000 35.79 10.64 43.44 2.57
2179 2440 2.049228 GTAGCGCGCTAATTACGTGAT 58.951 47.619 39.73 14.38 43.44 3.06
2180 2441 1.202166 TGTAGCGCGCTAATTACGTGA 60.202 47.619 39.73 16.67 43.44 4.35
2181 2442 1.072348 GTGTAGCGCGCTAATTACGTG 60.072 52.381 39.73 13.23 43.59 4.49
2182 2443 1.194495 GTGTAGCGCGCTAATTACGT 58.806 50.000 39.73 16.53 0.00 3.57
2267 2528 3.011517 CTACTGGGCCTGCTGGGT 61.012 66.667 12.06 3.25 37.43 4.51
2282 2543 0.824182 CGTGGGTTGGTTTTGGCCTA 60.824 55.000 3.32 0.00 0.00 3.93
2308 2569 5.171476 TCTGATAAAAGGAGTGAGAAAGCG 58.829 41.667 0.00 0.00 0.00 4.68
2328 2589 4.161189 TGAGAAAGCTAGTGGGAGAATCTG 59.839 45.833 0.00 0.00 33.73 2.90
2336 2597 2.183679 AGGAGTGAGAAAGCTAGTGGG 58.816 52.381 0.00 0.00 0.00 4.61
2588 2849 3.131933 TGTGGGAAAGTGGACATTGTTTG 59.868 43.478 0.00 0.00 0.00 2.93
2659 2920 3.002042 GGATTGAGAATGACGAGCACATG 59.998 47.826 0.00 0.00 0.00 3.21
2660 2921 3.201290 GGATTGAGAATGACGAGCACAT 58.799 45.455 0.00 0.00 0.00 3.21
2661 2922 2.621338 GGATTGAGAATGACGAGCACA 58.379 47.619 0.00 0.00 0.00 4.57
2662 2923 1.936547 GGGATTGAGAATGACGAGCAC 59.063 52.381 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.