Multiple sequence alignment - TraesCS1B01G069900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G069900 chr1B 100.000 2897 0 0 1 2897 55018306 55015410 0.000000e+00 5350.0
1 TraesCS1B01G069900 chr1B 98.828 2474 19 8 424 2897 54979343 54976880 0.000000e+00 4399.0
2 TraesCS1B01G069900 chr1B 85.723 1653 140 38 416 1980 55206989 55205345 0.000000e+00 1657.0
3 TraesCS1B01G069900 chr1B 89.590 1220 97 16 784 1980 55242345 55241133 0.000000e+00 1522.0
4 TraesCS1B01G069900 chr1B 81.701 1011 153 22 1073 2061 55428975 55427975 0.000000e+00 813.0
5 TraesCS1B01G069900 chr1B 85.470 234 25 2 416 640 55242945 55242712 4.830000e-58 235.0
6 TraesCS1B01G069900 chr1B 92.784 97 5 1 642 736 55242681 55242585 3.890000e-29 139.0
7 TraesCS1B01G069900 chr1B 91.429 70 4 2 240 309 7851135 7851068 8.550000e-16 95.3
8 TraesCS1B01G069900 chrUn 89.429 1646 101 32 404 1996 10695020 10696645 0.000000e+00 2008.0
9 TraesCS1B01G069900 chrUn 93.428 913 45 7 1989 2896 10698318 10699220 0.000000e+00 1339.0
10 TraesCS1B01G069900 chrUn 83.289 1137 135 27 791 1897 10650630 10651741 0.000000e+00 996.0
11 TraesCS1B01G069900 chrUn 81.352 1287 158 42 661 1897 353311 354565 0.000000e+00 972.0
12 TraesCS1B01G069900 chrUn 81.485 1118 144 38 975 2058 10643930 10645018 0.000000e+00 859.0
13 TraesCS1B01G069900 chr1A 96.749 1138 28 5 831 1961 34892024 34890889 0.000000e+00 1888.0
14 TraesCS1B01G069900 chr1A 95.364 949 40 3 1951 2897 34890709 34889763 0.000000e+00 1506.0
15 TraesCS1B01G069900 chr1A 80.796 1130 148 45 975 2065 34940391 34939292 0.000000e+00 821.0
16 TraesCS1B01G069900 chr1A 87.348 577 52 6 1702 2272 34875275 34874714 2.430000e-180 641.0
17 TraesCS1B01G069900 chr1A 94.030 134 7 1 747 880 34892156 34892024 4.890000e-48 202.0
18 TraesCS1B01G069900 chr1A 80.583 103 8 6 2725 2816 34874619 34874518 5.180000e-08 69.4
19 TraesCS1B01G069900 chr1D 89.457 626 61 1 1651 2271 35905415 35904790 0.000000e+00 785.0
20 TraesCS1B01G069900 chr1D 88.581 578 53 9 1702 2272 35793730 35793159 0.000000e+00 689.0
21 TraesCS1B01G069900 chr1D 88.923 325 32 3 2262 2586 104287344 104287024 5.820000e-107 398.0
22 TraesCS1B01G069900 chr1D 92.308 39 3 0 2778 2816 35792539 35792501 4.030000e-04 56.5
23 TraesCS1B01G069900 chr2D 79.651 1145 172 45 925 2033 471063194 471064313 0.000000e+00 767.0
24 TraesCS1B01G069900 chr2D 88.060 201 21 1 66 263 551329329 551329529 4.830000e-58 235.0
25 TraesCS1B01G069900 chr2D 92.754 69 3 2 236 304 12544041 12544107 6.610000e-17 99.0
26 TraesCS1B01G069900 chr3D 86.505 289 29 5 6 286 26008244 26008530 2.800000e-80 309.0
27 TraesCS1B01G069900 chr3D 82.128 235 36 3 14 243 4288229 4288462 2.280000e-46 196.0
28 TraesCS1B01G069900 chr3D 91.667 72 3 2 240 309 25106612 25106682 2.380000e-16 97.1
29 TraesCS1B01G069900 chr7D 84.815 270 33 4 2 264 625229364 625229096 6.160000e-67 265.0
30 TraesCS1B01G069900 chr7D 80.147 272 30 11 23 286 595964572 595964827 6.380000e-42 182.0
31 TraesCS1B01G069900 chr5D 84.496 258 32 3 15 264 257155887 257156144 6.200000e-62 248.0
32 TraesCS1B01G069900 chr5D 84.337 249 32 2 23 264 386175615 386175863 1.340000e-58 237.0
33 TraesCS1B01G069900 chr2B 81.955 266 33 9 13 265 797439420 797439157 8.130000e-51 211.0
34 TraesCS1B01G069900 chr6D 94.286 70 2 2 240 309 277559575 277559508 3.950000e-19 106.0
35 TraesCS1B01G069900 chr5B 86.598 97 6 6 241 333 497276223 497276130 1.840000e-17 100.0
36 TraesCS1B01G069900 chr7B 92.647 68 4 1 241 308 621924250 621924184 2.380000e-16 97.1
37 TraesCS1B01G069900 chr6A 92.537 67 3 2 235 301 203520849 203520913 8.550000e-16 95.3
38 TraesCS1B01G069900 chr3B 90.411 73 5 2 241 312 474243115 474243186 8.550000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G069900 chr1B 55015410 55018306 2896 True 5350.000000 5350 100.000000 1 2897 1 chr1B.!!$R3 2896
1 TraesCS1B01G069900 chr1B 54976880 54979343 2463 True 4399.000000 4399 98.828000 424 2897 1 chr1B.!!$R2 2473
2 TraesCS1B01G069900 chr1B 55205345 55206989 1644 True 1657.000000 1657 85.723000 416 1980 1 chr1B.!!$R4 1564
3 TraesCS1B01G069900 chr1B 55427975 55428975 1000 True 813.000000 813 81.701000 1073 2061 1 chr1B.!!$R5 988
4 TraesCS1B01G069900 chr1B 55241133 55242945 1812 True 632.000000 1522 89.281333 416 1980 3 chr1B.!!$R6 1564
5 TraesCS1B01G069900 chrUn 10695020 10699220 4200 False 1673.500000 2008 91.428500 404 2896 2 chrUn.!!$F4 2492
6 TraesCS1B01G069900 chrUn 10650630 10651741 1111 False 996.000000 996 83.289000 791 1897 1 chrUn.!!$F3 1106
7 TraesCS1B01G069900 chrUn 353311 354565 1254 False 972.000000 972 81.352000 661 1897 1 chrUn.!!$F1 1236
8 TraesCS1B01G069900 chrUn 10643930 10645018 1088 False 859.000000 859 81.485000 975 2058 1 chrUn.!!$F2 1083
9 TraesCS1B01G069900 chr1A 34889763 34892156 2393 True 1198.666667 1888 95.381000 747 2897 3 chr1A.!!$R3 2150
10 TraesCS1B01G069900 chr1A 34939292 34940391 1099 True 821.000000 821 80.796000 975 2065 1 chr1A.!!$R1 1090
11 TraesCS1B01G069900 chr1A 34874518 34875275 757 True 355.200000 641 83.965500 1702 2816 2 chr1A.!!$R2 1114
12 TraesCS1B01G069900 chr1D 35904790 35905415 625 True 785.000000 785 89.457000 1651 2271 1 chr1D.!!$R1 620
13 TraesCS1B01G069900 chr1D 35792501 35793730 1229 True 372.750000 689 90.444500 1702 2816 2 chr1D.!!$R3 1114
14 TraesCS1B01G069900 chr2D 471063194 471064313 1119 False 767.000000 767 79.651000 925 2033 1 chr2D.!!$F2 1108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.034896 CAAGGTCCCACGTGTAAGCT 59.965 55.0 15.65 13.47 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 4789 2.187707 CTGGCGCAATTTGTAGAATGC 58.812 47.619 10.83 0.0 35.49 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.259204 CGGCGTACGGGACAGAAA 59.741 61.111 18.39 0.00 39.42 2.52
63 64 2.090524 CGGCGTACGGGACAGAAAC 61.091 63.158 18.39 0.00 39.42 2.78
64 65 1.005867 GGCGTACGGGACAGAAACA 60.006 57.895 18.39 0.00 0.00 2.83
65 66 1.012486 GGCGTACGGGACAGAAACAG 61.012 60.000 18.39 0.00 0.00 3.16
66 67 0.038892 GCGTACGGGACAGAAACAGA 60.039 55.000 18.39 0.00 0.00 3.41
67 68 1.978542 CGTACGGGACAGAAACAGAG 58.021 55.000 7.57 0.00 0.00 3.35
68 69 1.268899 CGTACGGGACAGAAACAGAGT 59.731 52.381 7.57 0.00 0.00 3.24
69 70 2.673833 GTACGGGACAGAAACAGAGTG 58.326 52.381 0.00 0.00 0.00 3.51
70 71 0.393077 ACGGGACAGAAACAGAGTGG 59.607 55.000 0.00 0.00 0.00 4.00
71 72 0.951040 CGGGACAGAAACAGAGTGGC 60.951 60.000 0.00 0.00 0.00 5.01
72 73 0.606673 GGGACAGAAACAGAGTGGCC 60.607 60.000 0.00 0.00 38.85 5.36
73 74 0.606673 GGACAGAAACAGAGTGGCCC 60.607 60.000 0.00 0.00 32.59 5.80
74 75 0.951040 GACAGAAACAGAGTGGCCCG 60.951 60.000 0.00 0.00 0.00 6.13
75 76 1.672356 CAGAAACAGAGTGGCCCGG 60.672 63.158 0.00 0.00 0.00 5.73
76 77 2.147387 AGAAACAGAGTGGCCCGGT 61.147 57.895 0.00 0.00 0.00 5.28
77 78 1.228154 GAAACAGAGTGGCCCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
78 79 0.035739 GAAACAGAGTGGCCCGGTTA 59.964 55.000 0.00 0.00 0.00 2.85
79 80 0.036306 AAACAGAGTGGCCCGGTTAG 59.964 55.000 0.00 0.00 0.00 2.34
80 81 0.834687 AACAGAGTGGCCCGGTTAGA 60.835 55.000 0.00 0.00 0.00 2.10
81 82 0.834687 ACAGAGTGGCCCGGTTAGAA 60.835 55.000 0.00 0.00 0.00 2.10
82 83 0.391263 CAGAGTGGCCCGGTTAGAAC 60.391 60.000 0.00 0.00 0.00 3.01
83 84 1.078637 GAGTGGCCCGGTTAGAACC 60.079 63.158 0.00 0.99 45.76 3.62
84 85 2.045634 GTGGCCCGGTTAGAACCC 60.046 66.667 0.00 0.00 46.53 4.11
85 86 2.204029 TGGCCCGGTTAGAACCCT 60.204 61.111 0.00 0.00 46.53 4.34
86 87 1.080722 TGGCCCGGTTAGAACCCTA 59.919 57.895 0.00 0.00 46.53 3.53
87 88 0.979187 TGGCCCGGTTAGAACCCTAG 60.979 60.000 0.00 0.00 46.53 3.02
88 89 1.693152 GGCCCGGTTAGAACCCTAGG 61.693 65.000 0.06 0.06 46.53 3.02
89 90 0.688749 GCCCGGTTAGAACCCTAGGA 60.689 60.000 11.48 0.00 46.53 2.94
90 91 2.038534 GCCCGGTTAGAACCCTAGGAT 61.039 57.143 11.48 0.00 46.53 3.24
91 92 2.405559 CCCGGTTAGAACCCTAGGATT 58.594 52.381 11.48 0.00 46.53 3.01
92 93 2.104281 CCCGGTTAGAACCCTAGGATTG 59.896 54.545 11.48 0.00 46.53 2.67
93 94 2.484947 CCGGTTAGAACCCTAGGATTGC 60.485 54.545 11.48 0.00 46.53 3.56
94 95 2.434702 CGGTTAGAACCCTAGGATTGCT 59.565 50.000 11.48 2.99 46.53 3.91
95 96 3.118371 CGGTTAGAACCCTAGGATTGCTT 60.118 47.826 11.48 0.00 46.53 3.91
96 97 4.625564 CGGTTAGAACCCTAGGATTGCTTT 60.626 45.833 11.48 0.00 46.53 3.51
97 98 4.640647 GGTTAGAACCCTAGGATTGCTTTG 59.359 45.833 11.48 0.00 43.43 2.77
98 99 3.372440 AGAACCCTAGGATTGCTTTGG 57.628 47.619 11.48 0.00 0.00 3.28
99 100 2.024941 AGAACCCTAGGATTGCTTTGGG 60.025 50.000 11.48 12.27 40.37 4.12
100 101 0.631212 ACCCTAGGATTGCTTTGGGG 59.369 55.000 11.48 12.40 38.94 4.96
101 102 0.926293 CCCTAGGATTGCTTTGGGGA 59.074 55.000 11.48 0.00 34.71 4.81
102 103 1.500736 CCCTAGGATTGCTTTGGGGAT 59.499 52.381 11.48 0.00 34.71 3.85
103 104 2.590821 CCTAGGATTGCTTTGGGGATG 58.409 52.381 1.05 0.00 0.00 3.51
104 105 2.091665 CCTAGGATTGCTTTGGGGATGT 60.092 50.000 1.05 0.00 0.00 3.06
105 106 2.629017 AGGATTGCTTTGGGGATGTT 57.371 45.000 0.00 0.00 0.00 2.71
106 107 2.181975 AGGATTGCTTTGGGGATGTTG 58.818 47.619 0.00 0.00 0.00 3.33
107 108 1.901833 GGATTGCTTTGGGGATGTTGT 59.098 47.619 0.00 0.00 0.00 3.32
108 109 2.302733 GGATTGCTTTGGGGATGTTGTT 59.697 45.455 0.00 0.00 0.00 2.83
109 110 2.906691 TTGCTTTGGGGATGTTGTTG 57.093 45.000 0.00 0.00 0.00 3.33
110 111 0.392336 TGCTTTGGGGATGTTGTTGC 59.608 50.000 0.00 0.00 0.00 4.17
111 112 0.392336 GCTTTGGGGATGTTGTTGCA 59.608 50.000 0.00 0.00 0.00 4.08
112 113 1.873486 GCTTTGGGGATGTTGTTGCAC 60.873 52.381 0.00 0.00 0.00 4.57
113 114 0.387202 TTTGGGGATGTTGTTGCACG 59.613 50.000 0.00 0.00 0.00 5.34
114 115 1.459455 TTGGGGATGTTGTTGCACGG 61.459 55.000 0.00 0.00 0.00 4.94
115 116 1.901464 GGGGATGTTGTTGCACGGT 60.901 57.895 0.00 0.00 0.00 4.83
116 117 1.579429 GGGATGTTGTTGCACGGTC 59.421 57.895 0.00 0.00 0.00 4.79
117 118 1.579429 GGATGTTGTTGCACGGTCC 59.421 57.895 0.00 0.00 0.00 4.46
118 119 1.579429 GATGTTGTTGCACGGTCCC 59.421 57.895 0.00 0.00 0.00 4.46
119 120 1.152860 ATGTTGTTGCACGGTCCCA 60.153 52.632 0.00 0.00 0.00 4.37
120 121 1.452145 ATGTTGTTGCACGGTCCCAC 61.452 55.000 0.00 0.00 0.00 4.61
121 122 2.115911 GTTGTTGCACGGTCCCACA 61.116 57.895 0.00 0.00 0.00 4.17
122 123 1.152860 TTGTTGCACGGTCCCACAT 60.153 52.632 0.00 0.00 0.00 3.21
123 124 1.451337 TTGTTGCACGGTCCCACATG 61.451 55.000 0.00 0.00 0.00 3.21
124 125 1.896660 GTTGCACGGTCCCACATGT 60.897 57.895 0.00 0.00 0.00 3.21
125 126 0.604243 GTTGCACGGTCCCACATGTA 60.604 55.000 0.00 0.00 0.00 2.29
126 127 0.108774 TTGCACGGTCCCACATGTAA 59.891 50.000 0.00 0.00 0.00 2.41
127 128 0.321210 TGCACGGTCCCACATGTAAG 60.321 55.000 0.00 0.00 0.00 2.34
128 129 1.644786 GCACGGTCCCACATGTAAGC 61.645 60.000 0.00 0.00 0.00 3.09
129 130 0.036388 CACGGTCCCACATGTAAGCT 60.036 55.000 0.00 0.00 0.00 3.74
130 131 0.249398 ACGGTCCCACATGTAAGCTC 59.751 55.000 0.00 0.00 0.00 4.09
131 132 0.537188 CGGTCCCACATGTAAGCTCT 59.463 55.000 0.00 0.00 0.00 4.09
132 133 1.754803 CGGTCCCACATGTAAGCTCTA 59.245 52.381 0.00 0.00 0.00 2.43
133 134 2.223829 CGGTCCCACATGTAAGCTCTAG 60.224 54.545 0.00 0.00 0.00 2.43
134 135 3.031736 GGTCCCACATGTAAGCTCTAGA 58.968 50.000 0.00 0.00 0.00 2.43
135 136 3.181474 GGTCCCACATGTAAGCTCTAGAC 60.181 52.174 0.00 0.00 0.00 2.59
136 137 3.031736 TCCCACATGTAAGCTCTAGACC 58.968 50.000 0.00 0.00 0.00 3.85
137 138 2.103263 CCCACATGTAAGCTCTAGACCC 59.897 54.545 0.00 0.00 0.00 4.46
138 139 2.766263 CCACATGTAAGCTCTAGACCCA 59.234 50.000 0.00 0.00 0.00 4.51
139 140 3.430929 CCACATGTAAGCTCTAGACCCAC 60.431 52.174 0.00 0.00 0.00 4.61
140 141 2.427453 ACATGTAAGCTCTAGACCCACG 59.573 50.000 0.00 0.00 0.00 4.94
141 142 2.211250 TGTAAGCTCTAGACCCACGT 57.789 50.000 0.00 0.00 0.00 4.49
142 143 2.089980 TGTAAGCTCTAGACCCACGTC 58.910 52.381 0.00 0.00 39.50 4.34
143 144 1.404748 GTAAGCTCTAGACCCACGTCC 59.595 57.143 0.00 0.00 40.12 4.79
144 145 0.251653 AAGCTCTAGACCCACGTCCA 60.252 55.000 0.00 0.00 40.12 4.02
145 146 0.966370 AGCTCTAGACCCACGTCCAC 60.966 60.000 0.00 0.00 40.12 4.02
146 147 1.248785 GCTCTAGACCCACGTCCACA 61.249 60.000 0.00 0.00 40.12 4.17
147 148 1.254026 CTCTAGACCCACGTCCACAA 58.746 55.000 0.00 0.00 40.12 3.33
148 149 1.202582 CTCTAGACCCACGTCCACAAG 59.797 57.143 0.00 0.00 40.12 3.16
149 150 0.246635 CTAGACCCACGTCCACAAGG 59.753 60.000 0.00 0.00 40.12 3.61
150 151 0.470456 TAGACCCACGTCCACAAGGT 60.470 55.000 0.00 0.00 40.12 3.50
151 152 1.301479 GACCCACGTCCACAAGGTC 60.301 63.158 0.00 0.00 40.21 3.85
152 153 2.032071 CCCACGTCCACAAGGTCC 59.968 66.667 0.00 0.00 35.89 4.46
153 154 2.032071 CCACGTCCACAAGGTCCC 59.968 66.667 0.00 0.00 35.89 4.46
154 155 2.813726 CCACGTCCACAAGGTCCCA 61.814 63.158 0.00 0.00 35.89 4.37
155 156 1.597027 CACGTCCACAAGGTCCCAC 60.597 63.158 0.00 0.00 35.89 4.61
156 157 2.357034 CGTCCACAAGGTCCCACG 60.357 66.667 0.00 0.00 35.89 4.94
157 158 2.826702 GTCCACAAGGTCCCACGT 59.173 61.111 0.00 0.00 35.89 4.49
158 159 1.597027 GTCCACAAGGTCCCACGTG 60.597 63.158 9.08 9.08 35.89 4.49
159 160 2.067605 TCCACAAGGTCCCACGTGT 61.068 57.895 15.65 0.00 35.89 4.49
160 161 0.759812 TCCACAAGGTCCCACGTGTA 60.760 55.000 15.65 0.00 31.90 2.90
161 162 0.107081 CCACAAGGTCCCACGTGTAA 59.893 55.000 15.65 0.00 31.90 2.41
162 163 1.508632 CACAAGGTCCCACGTGTAAG 58.491 55.000 15.65 2.83 31.90 2.34
163 164 0.250166 ACAAGGTCCCACGTGTAAGC 60.250 55.000 15.65 11.35 31.35 3.09
164 165 0.034896 CAAGGTCCCACGTGTAAGCT 59.965 55.000 15.65 13.47 0.00 3.74
165 166 0.320697 AAGGTCCCACGTGTAAGCTC 59.679 55.000 15.65 0.00 0.00 4.09
166 167 1.079336 GGTCCCACGTGTAAGCTCC 60.079 63.158 15.65 4.44 0.00 4.70
167 168 1.445582 GTCCCACGTGTAAGCTCCG 60.446 63.158 15.65 0.00 0.00 4.63
168 169 2.125673 CCCACGTGTAAGCTCCGG 60.126 66.667 15.65 0.00 0.00 5.14
169 170 2.642254 CCCACGTGTAAGCTCCGGA 61.642 63.158 15.65 2.93 0.00 5.14
170 171 1.445582 CCACGTGTAAGCTCCGGAC 60.446 63.158 15.65 0.00 0.00 4.79
171 172 1.445582 CACGTGTAAGCTCCGGACC 60.446 63.158 7.58 0.00 0.00 4.46
172 173 2.183555 CGTGTAAGCTCCGGACCC 59.816 66.667 0.00 0.00 0.00 4.46
173 174 2.348888 CGTGTAAGCTCCGGACCCT 61.349 63.158 0.00 0.00 0.00 4.34
174 175 1.516423 GTGTAAGCTCCGGACCCTC 59.484 63.158 0.00 0.00 0.00 4.30
175 176 0.971447 GTGTAAGCTCCGGACCCTCT 60.971 60.000 0.00 0.00 0.00 3.69
176 177 0.627451 TGTAAGCTCCGGACCCTCTA 59.373 55.000 0.00 0.00 0.00 2.43
177 178 1.031235 GTAAGCTCCGGACCCTCTAC 58.969 60.000 0.00 2.66 0.00 2.59
178 179 0.106318 TAAGCTCCGGACCCTCTACC 60.106 60.000 0.00 0.00 0.00 3.18
179 180 2.043248 GCTCCGGACCCTCTACCA 60.043 66.667 0.00 0.00 0.00 3.25
180 181 2.424733 GCTCCGGACCCTCTACCAC 61.425 68.421 0.00 0.00 0.00 4.16
181 182 1.306970 CTCCGGACCCTCTACCACT 59.693 63.158 0.00 0.00 0.00 4.00
182 183 0.549950 CTCCGGACCCTCTACCACTA 59.450 60.000 0.00 0.00 0.00 2.74
183 184 1.002069 TCCGGACCCTCTACCACTAA 58.998 55.000 0.00 0.00 0.00 2.24
184 185 1.109609 CCGGACCCTCTACCACTAAC 58.890 60.000 0.00 0.00 0.00 2.34
185 186 0.737219 CGGACCCTCTACCACTAACG 59.263 60.000 0.00 0.00 0.00 3.18
186 187 1.109609 GGACCCTCTACCACTAACGG 58.890 60.000 0.00 0.00 0.00 4.44
187 188 0.459078 GACCCTCTACCACTAACGGC 59.541 60.000 0.00 0.00 0.00 5.68
188 189 0.251922 ACCCTCTACCACTAACGGCA 60.252 55.000 0.00 0.00 0.00 5.69
189 190 0.899720 CCCTCTACCACTAACGGCAA 59.100 55.000 0.00 0.00 0.00 4.52
190 191 1.485066 CCCTCTACCACTAACGGCAAT 59.515 52.381 0.00 0.00 0.00 3.56
191 192 2.696707 CCCTCTACCACTAACGGCAATA 59.303 50.000 0.00 0.00 0.00 1.90
192 193 3.243771 CCCTCTACCACTAACGGCAATAG 60.244 52.174 0.00 0.00 0.00 1.73
193 194 3.635373 CCTCTACCACTAACGGCAATAGA 59.365 47.826 1.01 0.00 0.00 1.98
194 195 4.499357 CCTCTACCACTAACGGCAATAGAC 60.499 50.000 1.01 0.00 0.00 2.59
202 203 3.678921 CGGCAATAGACGGAATGGA 57.321 52.632 0.00 0.00 44.44 3.41
203 204 1.217882 CGGCAATAGACGGAATGGAC 58.782 55.000 0.00 0.00 44.44 4.02
204 205 1.594331 GGCAATAGACGGAATGGACC 58.406 55.000 0.00 0.00 0.00 4.46
205 206 1.594331 GCAATAGACGGAATGGACCC 58.406 55.000 0.00 0.00 0.00 4.46
206 207 1.134220 GCAATAGACGGAATGGACCCA 60.134 52.381 0.00 0.00 0.00 4.51
207 208 2.682563 GCAATAGACGGAATGGACCCAA 60.683 50.000 0.00 0.00 0.00 4.12
208 209 3.616219 CAATAGACGGAATGGACCCAAA 58.384 45.455 0.00 0.00 0.00 3.28
209 210 4.013728 CAATAGACGGAATGGACCCAAAA 58.986 43.478 0.00 0.00 0.00 2.44
210 211 1.905637 AGACGGAATGGACCCAAAAC 58.094 50.000 0.00 0.00 0.00 2.43
211 212 1.423921 AGACGGAATGGACCCAAAACT 59.576 47.619 0.00 0.00 0.00 2.66
212 213 1.539827 GACGGAATGGACCCAAAACTG 59.460 52.381 0.00 0.00 0.00 3.16
213 214 0.243636 CGGAATGGACCCAAAACTGC 59.756 55.000 0.00 0.00 0.00 4.40
214 215 0.608130 GGAATGGACCCAAAACTGCC 59.392 55.000 0.00 0.00 0.00 4.85
215 216 0.608130 GAATGGACCCAAAACTGCCC 59.392 55.000 0.00 0.00 0.00 5.36
216 217 1.184970 AATGGACCCAAAACTGCCCG 61.185 55.000 0.00 0.00 0.00 6.13
217 218 2.203437 GGACCCAAAACTGCCCGT 60.203 61.111 0.00 0.00 0.00 5.28
218 219 1.830847 GGACCCAAAACTGCCCGTT 60.831 57.895 0.00 0.00 37.47 4.44
220 221 0.249280 GACCCAAAACTGCCCGTTTG 60.249 55.000 2.47 0.10 44.77 2.93
221 222 1.068921 CCCAAAACTGCCCGTTTGG 59.931 57.895 12.79 12.79 44.77 3.28
230 231 4.382788 CCCGTTTGGCCTCGTAAA 57.617 55.556 3.32 0.00 0.00 2.01
231 232 2.631427 CCCGTTTGGCCTCGTAAAA 58.369 52.632 3.32 0.00 0.00 1.52
232 233 0.519961 CCCGTTTGGCCTCGTAAAAG 59.480 55.000 3.32 0.00 0.00 2.27
233 234 1.232119 CCGTTTGGCCTCGTAAAAGT 58.768 50.000 3.32 0.00 0.00 2.66
234 235 2.415776 CCGTTTGGCCTCGTAAAAGTA 58.584 47.619 3.32 0.00 0.00 2.24
235 236 2.414138 CCGTTTGGCCTCGTAAAAGTAG 59.586 50.000 3.32 0.00 0.00 2.57
236 237 3.062042 CGTTTGGCCTCGTAAAAGTAGT 58.938 45.455 3.32 0.00 0.00 2.73
237 238 3.495753 CGTTTGGCCTCGTAAAAGTAGTT 59.504 43.478 3.32 0.00 0.00 2.24
238 239 4.609783 CGTTTGGCCTCGTAAAAGTAGTTG 60.610 45.833 3.32 0.00 0.00 3.16
239 240 2.419667 TGGCCTCGTAAAAGTAGTTGC 58.580 47.619 3.32 0.00 0.00 4.17
240 241 1.392510 GGCCTCGTAAAAGTAGTTGCG 59.607 52.381 0.00 0.00 37.87 4.85
241 242 1.201888 GCCTCGTAAAAGTAGTTGCGC 60.202 52.381 0.00 0.00 36.66 6.09
242 243 2.063266 CCTCGTAAAAGTAGTTGCGCA 58.937 47.619 5.66 5.66 36.66 6.09
243 244 2.159881 CCTCGTAAAAGTAGTTGCGCAC 60.160 50.000 11.12 5.61 36.66 5.34
244 245 1.794116 TCGTAAAAGTAGTTGCGCACC 59.206 47.619 11.12 1.55 36.66 5.01
245 246 1.796459 CGTAAAAGTAGTTGCGCACCT 59.204 47.619 11.12 12.45 30.04 4.00
246 247 2.411031 CGTAAAAGTAGTTGCGCACCTG 60.411 50.000 18.68 0.00 30.04 4.00
247 248 1.961793 AAAAGTAGTTGCGCACCTGA 58.038 45.000 18.68 0.00 0.00 3.86
248 249 1.512926 AAAGTAGTTGCGCACCTGAG 58.487 50.000 18.68 0.00 0.00 3.35
249 250 0.320771 AAGTAGTTGCGCACCTGAGG 60.321 55.000 18.68 0.00 0.00 3.86
250 251 1.741770 GTAGTTGCGCACCTGAGGG 60.742 63.158 18.68 0.00 38.88 4.30
251 252 3.605749 TAGTTGCGCACCTGAGGGC 62.606 63.158 18.68 2.35 46.45 5.19
255 256 3.294493 GCGCACCTGAGGGCAAAA 61.294 61.111 0.30 0.00 45.67 2.44
256 257 2.644992 CGCACCTGAGGGCAAAAC 59.355 61.111 2.38 0.00 35.63 2.43
257 258 1.898574 CGCACCTGAGGGCAAAACT 60.899 57.895 2.38 0.00 35.63 2.66
258 259 1.662044 GCACCTGAGGGCAAAACTG 59.338 57.895 2.38 0.00 35.63 3.16
259 260 0.823356 GCACCTGAGGGCAAAACTGA 60.823 55.000 2.38 0.00 35.63 3.41
260 261 1.242076 CACCTGAGGGCAAAACTGAG 58.758 55.000 2.38 0.00 35.63 3.35
261 262 0.538287 ACCTGAGGGCAAAACTGAGC 60.538 55.000 2.38 0.00 35.63 4.26
262 263 0.538057 CCTGAGGGCAAAACTGAGCA 60.538 55.000 0.00 0.00 0.00 4.26
263 264 0.595095 CTGAGGGCAAAACTGAGCAC 59.405 55.000 0.00 0.00 0.00 4.40
264 265 0.106769 TGAGGGCAAAACTGAGCACA 60.107 50.000 0.00 0.00 36.38 4.57
265 266 1.251251 GAGGGCAAAACTGAGCACAT 58.749 50.000 0.00 0.00 36.38 3.21
266 267 0.963962 AGGGCAAAACTGAGCACATG 59.036 50.000 0.00 0.00 36.38 3.21
267 268 0.961019 GGGCAAAACTGAGCACATGA 59.039 50.000 0.00 0.00 33.42 3.07
268 269 1.340889 GGGCAAAACTGAGCACATGAA 59.659 47.619 0.00 0.00 33.42 2.57
269 270 2.397549 GGCAAAACTGAGCACATGAAC 58.602 47.619 0.00 0.00 0.00 3.18
270 271 2.223782 GGCAAAACTGAGCACATGAACA 60.224 45.455 0.00 0.00 0.00 3.18
271 272 2.791004 GCAAAACTGAGCACATGAACAC 59.209 45.455 0.00 0.00 0.00 3.32
272 273 3.374745 CAAAACTGAGCACATGAACACC 58.625 45.455 0.00 0.00 0.00 4.16
273 274 2.346766 AACTGAGCACATGAACACCA 57.653 45.000 0.00 0.00 0.00 4.17
274 275 1.597742 ACTGAGCACATGAACACCAC 58.402 50.000 0.00 0.00 0.00 4.16
275 276 1.141657 ACTGAGCACATGAACACCACT 59.858 47.619 0.00 0.00 0.00 4.00
276 277 2.368548 ACTGAGCACATGAACACCACTA 59.631 45.455 0.00 0.00 0.00 2.74
277 278 3.181455 ACTGAGCACATGAACACCACTAA 60.181 43.478 0.00 0.00 0.00 2.24
278 279 3.402110 TGAGCACATGAACACCACTAAG 58.598 45.455 0.00 0.00 0.00 2.18
279 280 2.744202 GAGCACATGAACACCACTAAGG 59.256 50.000 0.00 0.00 45.67 2.69
280 281 1.812571 GCACATGAACACCACTAAGGG 59.187 52.381 0.00 0.00 43.89 3.95
281 282 1.812571 CACATGAACACCACTAAGGGC 59.187 52.381 0.00 0.00 43.89 5.19
282 283 1.423541 ACATGAACACCACTAAGGGCA 59.576 47.619 0.00 0.00 43.89 5.36
283 284 2.158534 ACATGAACACCACTAAGGGCAA 60.159 45.455 0.00 0.00 43.89 4.52
284 285 2.738587 TGAACACCACTAAGGGCAAA 57.261 45.000 0.00 0.00 43.89 3.68
285 286 3.019799 TGAACACCACTAAGGGCAAAA 57.980 42.857 0.00 0.00 43.89 2.44
286 287 2.955660 TGAACACCACTAAGGGCAAAAG 59.044 45.455 0.00 0.00 43.89 2.27
287 288 1.995376 ACACCACTAAGGGCAAAAGG 58.005 50.000 0.00 0.00 43.89 3.11
288 289 1.497286 ACACCACTAAGGGCAAAAGGA 59.503 47.619 0.00 0.00 43.89 3.36
289 290 2.110011 ACACCACTAAGGGCAAAAGGAT 59.890 45.455 0.00 0.00 43.89 3.24
290 291 3.332485 ACACCACTAAGGGCAAAAGGATA 59.668 43.478 0.00 0.00 43.89 2.59
291 292 4.202631 ACACCACTAAGGGCAAAAGGATAA 60.203 41.667 0.00 0.00 43.89 1.75
292 293 4.956075 CACCACTAAGGGCAAAAGGATAAT 59.044 41.667 0.00 0.00 43.89 1.28
293 294 5.422012 CACCACTAAGGGCAAAAGGATAATT 59.578 40.000 0.00 0.00 43.89 1.40
294 295 6.605594 CACCACTAAGGGCAAAAGGATAATTA 59.394 38.462 0.00 0.00 43.89 1.40
295 296 7.123547 CACCACTAAGGGCAAAAGGATAATTAA 59.876 37.037 0.00 0.00 43.89 1.40
296 297 7.844269 ACCACTAAGGGCAAAAGGATAATTAAT 59.156 33.333 0.00 0.00 43.89 1.40
297 298 8.360390 CCACTAAGGGCAAAAGGATAATTAATC 58.640 37.037 0.00 0.00 0.00 1.75
315 316 8.504812 AATTAATCCCATTTGTAATGGTTTGC 57.495 30.769 15.28 0.00 37.48 3.68
316 317 5.760484 AATCCCATTTGTAATGGTTTGCT 57.240 34.783 15.28 0.00 37.48 3.91
317 318 5.760484 ATCCCATTTGTAATGGTTTGCTT 57.240 34.783 15.28 0.00 37.48 3.91
318 319 4.892433 TCCCATTTGTAATGGTTTGCTTG 58.108 39.130 15.28 1.38 37.48 4.01
319 320 4.590647 TCCCATTTGTAATGGTTTGCTTGA 59.409 37.500 15.28 3.38 37.48 3.02
320 321 4.931002 CCCATTTGTAATGGTTTGCTTGAG 59.069 41.667 15.28 0.00 37.48 3.02
321 322 5.511202 CCCATTTGTAATGGTTTGCTTGAGT 60.511 40.000 15.28 0.00 37.48 3.41
322 323 5.634859 CCATTTGTAATGGTTTGCTTGAGTC 59.365 40.000 9.74 0.00 34.56 3.36
323 324 5.843673 TTTGTAATGGTTTGCTTGAGTCA 57.156 34.783 0.00 0.00 0.00 3.41
324 325 6.403866 TTTGTAATGGTTTGCTTGAGTCAT 57.596 33.333 0.00 0.00 0.00 3.06
325 326 6.403866 TTGTAATGGTTTGCTTGAGTCATT 57.596 33.333 0.00 0.00 0.00 2.57
326 327 5.771469 TGTAATGGTTTGCTTGAGTCATTG 58.229 37.500 0.00 0.00 0.00 2.82
327 328 5.534278 TGTAATGGTTTGCTTGAGTCATTGA 59.466 36.000 0.00 0.00 0.00 2.57
328 329 5.733620 AATGGTTTGCTTGAGTCATTGAT 57.266 34.783 0.00 0.00 0.00 2.57
329 330 4.508461 TGGTTTGCTTGAGTCATTGATG 57.492 40.909 0.00 0.00 0.00 3.07
330 331 3.256383 TGGTTTGCTTGAGTCATTGATGG 59.744 43.478 0.00 0.00 0.00 3.51
331 332 3.507233 GGTTTGCTTGAGTCATTGATGGA 59.493 43.478 0.00 0.00 0.00 3.41
332 333 4.022068 GGTTTGCTTGAGTCATTGATGGAA 60.022 41.667 0.00 0.00 0.00 3.53
333 334 5.159209 GTTTGCTTGAGTCATTGATGGAAG 58.841 41.667 0.00 0.00 0.00 3.46
334 335 3.349927 TGCTTGAGTCATTGATGGAAGG 58.650 45.455 0.00 0.00 0.00 3.46
335 336 3.009363 TGCTTGAGTCATTGATGGAAGGA 59.991 43.478 0.00 0.00 0.00 3.36
336 337 3.626670 GCTTGAGTCATTGATGGAAGGAG 59.373 47.826 0.00 0.00 0.00 3.69
337 338 4.624843 GCTTGAGTCATTGATGGAAGGAGA 60.625 45.833 0.00 0.00 0.00 3.71
338 339 4.750021 TGAGTCATTGATGGAAGGAGAG 57.250 45.455 0.00 0.00 0.00 3.20
339 340 4.356436 TGAGTCATTGATGGAAGGAGAGA 58.644 43.478 0.00 0.00 0.00 3.10
340 341 4.967442 TGAGTCATTGATGGAAGGAGAGAT 59.033 41.667 0.00 0.00 0.00 2.75
341 342 6.138967 TGAGTCATTGATGGAAGGAGAGATA 58.861 40.000 0.00 0.00 0.00 1.98
342 343 6.041409 TGAGTCATTGATGGAAGGAGAGATAC 59.959 42.308 0.00 0.00 0.00 2.24
343 344 5.010516 AGTCATTGATGGAAGGAGAGATACG 59.989 44.000 0.00 0.00 0.00 3.06
344 345 4.895889 TCATTGATGGAAGGAGAGATACGT 59.104 41.667 0.00 0.00 0.00 3.57
345 346 6.016192 GTCATTGATGGAAGGAGAGATACGTA 60.016 42.308 0.00 0.00 0.00 3.57
346 347 5.769484 TTGATGGAAGGAGAGATACGTAC 57.231 43.478 0.00 0.00 0.00 3.67
347 348 3.813724 TGATGGAAGGAGAGATACGTACG 59.186 47.826 15.01 15.01 0.00 3.67
348 349 3.272574 TGGAAGGAGAGATACGTACGT 57.727 47.619 25.98 25.98 0.00 3.57
349 350 3.614092 TGGAAGGAGAGATACGTACGTT 58.386 45.455 27.92 14.22 0.00 3.99
350 351 4.012374 TGGAAGGAGAGATACGTACGTTT 58.988 43.478 27.92 19.40 0.00 3.60
351 352 4.460382 TGGAAGGAGAGATACGTACGTTTT 59.540 41.667 27.92 14.72 0.00 2.43
352 353 5.047802 TGGAAGGAGAGATACGTACGTTTTT 60.048 40.000 27.92 14.19 0.00 1.94
353 354 6.150976 TGGAAGGAGAGATACGTACGTTTTTA 59.849 38.462 27.92 8.87 0.00 1.52
354 355 7.029563 GGAAGGAGAGATACGTACGTTTTTAA 58.970 38.462 27.92 8.43 0.00 1.52
355 356 7.704047 GGAAGGAGAGATACGTACGTTTTTAAT 59.296 37.037 27.92 13.51 0.00 1.40
356 357 8.992835 AAGGAGAGATACGTACGTTTTTAATT 57.007 30.769 27.92 9.55 0.00 1.40
357 358 8.403606 AGGAGAGATACGTACGTTTTTAATTG 57.596 34.615 27.92 0.00 0.00 2.32
358 359 8.031277 AGGAGAGATACGTACGTTTTTAATTGT 58.969 33.333 27.92 5.03 0.00 2.71
359 360 8.650714 GGAGAGATACGTACGTTTTTAATTGTT 58.349 33.333 27.92 3.63 0.00 2.83
361 362 9.801714 AGAGATACGTACGTTTTTAATTGTTTG 57.198 29.630 27.92 0.00 0.00 2.93
362 363 8.425904 AGATACGTACGTTTTTAATTGTTTGC 57.574 30.769 27.92 2.12 0.00 3.68
363 364 8.068977 AGATACGTACGTTTTTAATTGTTTGCA 58.931 29.630 27.92 2.18 0.00 4.08
364 365 8.730970 ATACGTACGTTTTTAATTGTTTGCAT 57.269 26.923 27.92 4.74 0.00 3.96
365 366 6.858057 ACGTACGTTTTTAATTGTTTGCATG 58.142 32.000 16.72 0.00 0.00 4.06
366 367 6.472808 ACGTACGTTTTTAATTGTTTGCATGT 59.527 30.769 16.72 0.00 0.00 3.21
367 368 6.778642 CGTACGTTTTTAATTGTTTGCATGTG 59.221 34.615 7.22 0.00 0.00 3.21
368 369 6.893958 ACGTTTTTAATTGTTTGCATGTGA 57.106 29.167 0.00 0.00 0.00 3.58
369 370 7.475771 ACGTTTTTAATTGTTTGCATGTGAT 57.524 28.000 0.00 0.00 0.00 3.06
370 371 7.343691 ACGTTTTTAATTGTTTGCATGTGATG 58.656 30.769 0.00 0.00 0.00 3.07
371 372 6.791299 CGTTTTTAATTGTTTGCATGTGATGG 59.209 34.615 0.00 0.00 0.00 3.51
372 373 6.798315 TTTTAATTGTTTGCATGTGATGGG 57.202 33.333 0.00 0.00 0.00 4.00
373 374 5.735285 TTAATTGTTTGCATGTGATGGGA 57.265 34.783 0.00 0.00 0.00 4.37
374 375 4.620589 AATTGTTTGCATGTGATGGGAA 57.379 36.364 0.00 0.00 0.00 3.97
375 376 4.829872 ATTGTTTGCATGTGATGGGAAT 57.170 36.364 0.00 0.00 0.00 3.01
376 377 4.620589 TTGTTTGCATGTGATGGGAATT 57.379 36.364 0.00 0.00 0.00 2.17
377 378 4.191033 TGTTTGCATGTGATGGGAATTC 57.809 40.909 0.00 0.00 0.00 2.17
378 379 3.577415 TGTTTGCATGTGATGGGAATTCA 59.423 39.130 7.93 0.00 0.00 2.57
379 380 3.872511 TTGCATGTGATGGGAATTCAC 57.127 42.857 7.93 3.78 43.04 3.18
380 381 1.744522 TGCATGTGATGGGAATTCACG 59.255 47.619 7.93 0.00 45.14 4.35
381 382 1.745087 GCATGTGATGGGAATTCACGT 59.255 47.619 0.88 0.88 45.14 4.49
382 383 2.164219 GCATGTGATGGGAATTCACGTT 59.836 45.455 3.39 0.00 45.14 3.99
383 384 3.761657 CATGTGATGGGAATTCACGTTG 58.238 45.455 3.39 0.00 45.14 4.10
384 385 3.133141 TGTGATGGGAATTCACGTTGA 57.867 42.857 3.39 0.00 45.14 3.18
385 386 3.481453 TGTGATGGGAATTCACGTTGAA 58.519 40.909 3.39 3.49 45.14 2.69
386 387 3.252215 TGTGATGGGAATTCACGTTGAAC 59.748 43.478 3.39 4.40 45.14 3.18
387 388 3.502211 GTGATGGGAATTCACGTTGAACT 59.498 43.478 3.39 0.00 39.45 3.01
388 389 4.693566 GTGATGGGAATTCACGTTGAACTA 59.306 41.667 3.39 0.00 39.45 2.24
389 390 5.354234 GTGATGGGAATTCACGTTGAACTAT 59.646 40.000 3.39 0.00 39.45 2.12
390 391 5.943416 TGATGGGAATTCACGTTGAACTATT 59.057 36.000 3.39 0.00 39.45 1.73
391 392 6.432783 TGATGGGAATTCACGTTGAACTATTT 59.567 34.615 3.39 0.00 39.45 1.40
392 393 6.007936 TGGGAATTCACGTTGAACTATTTG 57.992 37.500 7.93 0.00 39.45 2.32
393 394 5.533154 TGGGAATTCACGTTGAACTATTTGT 59.467 36.000 7.93 0.00 39.45 2.83
394 395 6.084277 GGGAATTCACGTTGAACTATTTGTC 58.916 40.000 7.93 0.00 39.45 3.18
395 396 5.788531 GGAATTCACGTTGAACTATTTGTCG 59.211 40.000 7.93 0.00 39.45 4.35
396 397 3.781341 TCACGTTGAACTATTTGTCGC 57.219 42.857 0.00 0.00 0.00 5.19
397 398 2.154198 TCACGTTGAACTATTTGTCGCG 59.846 45.455 0.00 0.00 0.00 5.87
398 399 2.154198 CACGTTGAACTATTTGTCGCGA 59.846 45.455 3.71 3.71 0.00 5.87
399 400 2.154389 ACGTTGAACTATTTGTCGCGAC 59.846 45.455 31.66 31.66 0.00 5.19
400 401 2.154198 CGTTGAACTATTTGTCGCGACA 59.846 45.455 36.40 36.40 39.98 4.35
409 410 2.442212 TTGTCGCGACAATAACCAGA 57.558 45.000 42.01 23.79 45.42 3.86
411 412 1.000052 TGTCGCGACAATAACCAGACA 60.000 47.619 37.68 12.17 38.56 3.41
414 415 3.124636 GTCGCGACAATAACCAGACAAAT 59.875 43.478 33.09 0.00 0.00 2.32
536 540 8.131100 TCTAAAGAAAAACAAGAGCATGAACAG 58.869 33.333 0.00 0.00 0.00 3.16
637 648 1.079405 GCGGACAAAGATCGGGTCA 60.079 57.895 13.79 0.00 33.26 4.02
677 720 5.173664 CCAAAAGGAAAAGATCAATCAGCC 58.826 41.667 0.00 0.00 0.00 4.85
749 794 3.749665 TTCAATGGTTTTTCAGGCAGG 57.250 42.857 0.00 0.00 0.00 4.85
750 795 1.969923 TCAATGGTTTTTCAGGCAGGG 59.030 47.619 0.00 0.00 0.00 4.45
751 796 1.002315 CAATGGTTTTTCAGGCAGGGG 59.998 52.381 0.00 0.00 0.00 4.79
818 1070 1.697284 TCATCGCTAGCTCCATCTGT 58.303 50.000 13.93 0.00 0.00 3.41
983 1301 0.473755 TTGATATCCACATGCGCCCT 59.526 50.000 4.18 0.00 0.00 5.19
1100 1431 3.760580 ACTAGTCTGCACAGCTCTTTT 57.239 42.857 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.090524 GTTTCTGTCCCGTACGCCG 61.091 63.158 10.49 1.59 0.00 6.46
46 47 1.005867 TGTTTCTGTCCCGTACGCC 60.006 57.895 10.49 0.00 0.00 5.68
47 48 0.038892 TCTGTTTCTGTCCCGTACGC 60.039 55.000 10.49 0.00 0.00 4.42
48 49 1.268899 ACTCTGTTTCTGTCCCGTACG 59.731 52.381 8.69 8.69 0.00 3.67
49 50 2.609737 CCACTCTGTTTCTGTCCCGTAC 60.610 54.545 0.00 0.00 0.00 3.67
50 51 1.616865 CCACTCTGTTTCTGTCCCGTA 59.383 52.381 0.00 0.00 0.00 4.02
51 52 0.393077 CCACTCTGTTTCTGTCCCGT 59.607 55.000 0.00 0.00 0.00 5.28
52 53 0.951040 GCCACTCTGTTTCTGTCCCG 60.951 60.000 0.00 0.00 0.00 5.14
53 54 0.606673 GGCCACTCTGTTTCTGTCCC 60.607 60.000 0.00 0.00 0.00 4.46
54 55 0.606673 GGGCCACTCTGTTTCTGTCC 60.607 60.000 4.39 0.00 0.00 4.02
55 56 0.951040 CGGGCCACTCTGTTTCTGTC 60.951 60.000 4.39 0.00 0.00 3.51
56 57 1.071471 CGGGCCACTCTGTTTCTGT 59.929 57.895 4.39 0.00 0.00 3.41
57 58 1.672356 CCGGGCCACTCTGTTTCTG 60.672 63.158 4.39 0.00 0.00 3.02
58 59 1.705997 AACCGGGCCACTCTGTTTCT 61.706 55.000 6.32 0.00 0.00 2.52
59 60 0.035739 TAACCGGGCCACTCTGTTTC 59.964 55.000 6.32 0.00 0.00 2.78
60 61 0.036306 CTAACCGGGCCACTCTGTTT 59.964 55.000 6.32 0.00 0.00 2.83
61 62 0.834687 TCTAACCGGGCCACTCTGTT 60.835 55.000 6.32 2.35 0.00 3.16
62 63 0.834687 TTCTAACCGGGCCACTCTGT 60.835 55.000 6.32 0.00 0.00 3.41
63 64 0.391263 GTTCTAACCGGGCCACTCTG 60.391 60.000 6.32 0.00 0.00 3.35
64 65 1.551019 GGTTCTAACCGGGCCACTCT 61.551 60.000 6.32 0.00 39.66 3.24
65 66 1.078637 GGTTCTAACCGGGCCACTC 60.079 63.158 6.32 0.00 39.66 3.51
66 67 3.075186 GGTTCTAACCGGGCCACT 58.925 61.111 6.32 0.00 39.66 4.00
75 76 4.640647 CCAAAGCAATCCTAGGGTTCTAAC 59.359 45.833 3.59 0.00 0.00 2.34
76 77 4.325030 CCCAAAGCAATCCTAGGGTTCTAA 60.325 45.833 3.59 0.00 35.38 2.10
77 78 3.202151 CCCAAAGCAATCCTAGGGTTCTA 59.798 47.826 3.59 0.00 35.38 2.10
78 79 2.024941 CCCAAAGCAATCCTAGGGTTCT 60.025 50.000 3.59 2.61 35.38 3.01
79 80 2.379005 CCCAAAGCAATCCTAGGGTTC 58.621 52.381 3.59 0.08 35.38 3.62
80 81 1.007118 CCCCAAAGCAATCCTAGGGTT 59.993 52.381 9.46 4.81 37.33 4.11
81 82 0.631212 CCCCAAAGCAATCCTAGGGT 59.369 55.000 9.46 0.00 37.33 4.34
82 83 0.926293 TCCCCAAAGCAATCCTAGGG 59.074 55.000 9.46 0.00 38.26 3.53
83 84 2.091665 ACATCCCCAAAGCAATCCTAGG 60.092 50.000 0.82 0.82 0.00 3.02
84 85 3.303351 ACATCCCCAAAGCAATCCTAG 57.697 47.619 0.00 0.00 0.00 3.02
85 86 3.245586 ACAACATCCCCAAAGCAATCCTA 60.246 43.478 0.00 0.00 0.00 2.94
86 87 2.181975 CAACATCCCCAAAGCAATCCT 58.818 47.619 0.00 0.00 0.00 3.24
87 88 1.901833 ACAACATCCCCAAAGCAATCC 59.098 47.619 0.00 0.00 0.00 3.01
88 89 3.328505 CAACAACATCCCCAAAGCAATC 58.671 45.455 0.00 0.00 0.00 2.67
89 90 2.550639 GCAACAACATCCCCAAAGCAAT 60.551 45.455 0.00 0.00 0.00 3.56
90 91 1.202627 GCAACAACATCCCCAAAGCAA 60.203 47.619 0.00 0.00 0.00 3.91
91 92 0.392336 GCAACAACATCCCCAAAGCA 59.608 50.000 0.00 0.00 0.00 3.91
92 93 0.392336 TGCAACAACATCCCCAAAGC 59.608 50.000 0.00 0.00 0.00 3.51
93 94 1.602668 CGTGCAACAACATCCCCAAAG 60.603 52.381 0.00 0.00 35.74 2.77
94 95 0.387202 CGTGCAACAACATCCCCAAA 59.613 50.000 0.00 0.00 35.74 3.28
95 96 1.459455 CCGTGCAACAACATCCCCAA 61.459 55.000 0.00 0.00 35.74 4.12
96 97 1.900981 CCGTGCAACAACATCCCCA 60.901 57.895 0.00 0.00 35.74 4.96
97 98 1.862602 GACCGTGCAACAACATCCCC 61.863 60.000 0.00 0.00 35.74 4.81
98 99 1.579429 GACCGTGCAACAACATCCC 59.421 57.895 0.00 0.00 35.74 3.85
99 100 1.579429 GGACCGTGCAACAACATCC 59.421 57.895 0.00 0.00 35.74 3.51
100 101 1.169661 TGGGACCGTGCAACAACATC 61.170 55.000 0.00 0.00 35.74 3.06
101 102 1.152860 TGGGACCGTGCAACAACAT 60.153 52.632 0.00 0.00 35.74 2.71
102 103 2.115911 GTGGGACCGTGCAACAACA 61.116 57.895 0.00 0.00 35.74 3.33
103 104 1.452145 ATGTGGGACCGTGCAACAAC 61.452 55.000 4.13 0.00 35.74 3.32
104 105 1.152860 ATGTGGGACCGTGCAACAA 60.153 52.632 4.13 0.00 35.74 2.83
105 106 1.896183 CATGTGGGACCGTGCAACA 60.896 57.895 2.31 2.31 35.74 3.33
106 107 0.604243 TACATGTGGGACCGTGCAAC 60.604 55.000 9.11 0.00 0.00 4.17
107 108 0.108774 TTACATGTGGGACCGTGCAA 59.891 50.000 9.11 0.00 0.00 4.08
108 109 0.321210 CTTACATGTGGGACCGTGCA 60.321 55.000 9.11 0.00 0.00 4.57
109 110 1.644786 GCTTACATGTGGGACCGTGC 61.645 60.000 9.11 0.00 0.00 5.34
110 111 0.036388 AGCTTACATGTGGGACCGTG 60.036 55.000 9.11 0.00 0.00 4.94
111 112 0.249398 GAGCTTACATGTGGGACCGT 59.751 55.000 9.11 0.00 0.00 4.83
112 113 0.537188 AGAGCTTACATGTGGGACCG 59.463 55.000 9.11 0.00 0.00 4.79
113 114 3.031736 TCTAGAGCTTACATGTGGGACC 58.968 50.000 9.11 0.00 0.00 4.46
114 115 3.181474 GGTCTAGAGCTTACATGTGGGAC 60.181 52.174 14.73 5.00 0.00 4.46
115 116 3.031736 GGTCTAGAGCTTACATGTGGGA 58.968 50.000 14.73 0.00 0.00 4.37
116 117 2.103263 GGGTCTAGAGCTTACATGTGGG 59.897 54.545 20.67 1.90 0.00 4.61
117 118 2.766263 TGGGTCTAGAGCTTACATGTGG 59.234 50.000 20.67 2.29 0.00 4.17
118 119 3.735208 CGTGGGTCTAGAGCTTACATGTG 60.735 52.174 20.67 0.00 0.00 3.21
119 120 2.427453 CGTGGGTCTAGAGCTTACATGT 59.573 50.000 20.67 2.69 0.00 3.21
120 121 2.427453 ACGTGGGTCTAGAGCTTACATG 59.573 50.000 20.67 16.76 0.00 3.21
121 122 2.688958 GACGTGGGTCTAGAGCTTACAT 59.311 50.000 20.67 9.57 40.15 2.29
122 123 2.089980 GACGTGGGTCTAGAGCTTACA 58.910 52.381 20.67 8.42 40.15 2.41
123 124 1.404748 GGACGTGGGTCTAGAGCTTAC 59.595 57.143 20.67 17.56 42.97 2.34
124 125 1.005097 TGGACGTGGGTCTAGAGCTTA 59.995 52.381 20.67 8.40 42.97 3.09
125 126 0.251653 TGGACGTGGGTCTAGAGCTT 60.252 55.000 20.67 4.04 42.97 3.74
126 127 0.966370 GTGGACGTGGGTCTAGAGCT 60.966 60.000 20.67 1.36 42.97 4.09
127 128 1.248785 TGTGGACGTGGGTCTAGAGC 61.249 60.000 13.67 13.67 42.97 4.09
128 129 1.202582 CTTGTGGACGTGGGTCTAGAG 59.797 57.143 0.00 0.00 42.97 2.43
129 130 1.254026 CTTGTGGACGTGGGTCTAGA 58.746 55.000 0.00 0.00 42.97 2.43
130 131 0.246635 CCTTGTGGACGTGGGTCTAG 59.753 60.000 0.00 0.00 42.97 2.43
131 132 0.470456 ACCTTGTGGACGTGGGTCTA 60.470 55.000 0.00 0.00 42.97 2.59
132 133 1.755393 GACCTTGTGGACGTGGGTCT 61.755 60.000 0.00 0.00 42.97 3.85
133 134 1.301479 GACCTTGTGGACGTGGGTC 60.301 63.158 0.00 0.00 42.66 4.46
134 135 2.814835 GGACCTTGTGGACGTGGGT 61.815 63.158 0.00 0.00 37.04 4.51
135 136 2.032071 GGACCTTGTGGACGTGGG 59.968 66.667 0.00 0.00 37.04 4.61
136 137 2.032071 GGGACCTTGTGGACGTGG 59.968 66.667 0.00 0.00 37.04 4.94
137 138 1.597027 GTGGGACCTTGTGGACGTG 60.597 63.158 0.00 0.00 37.04 4.49
138 139 2.826702 GTGGGACCTTGTGGACGT 59.173 61.111 0.00 0.00 37.04 4.34
139 140 2.357034 CGTGGGACCTTGTGGACG 60.357 66.667 0.00 0.00 37.04 4.79
140 141 1.597027 CACGTGGGACCTTGTGGAC 60.597 63.158 7.95 0.00 37.04 4.02
141 142 0.759812 TACACGTGGGACCTTGTGGA 60.760 55.000 21.57 6.47 36.67 4.02
142 143 0.107081 TTACACGTGGGACCTTGTGG 59.893 55.000 21.57 0.00 36.67 4.17
143 144 1.508632 CTTACACGTGGGACCTTGTG 58.491 55.000 21.57 10.56 38.28 3.33
144 145 0.250166 GCTTACACGTGGGACCTTGT 60.250 55.000 21.57 0.00 0.00 3.16
145 146 0.034896 AGCTTACACGTGGGACCTTG 59.965 55.000 21.57 3.76 0.00 3.61
146 147 0.320697 GAGCTTACACGTGGGACCTT 59.679 55.000 21.57 0.00 0.00 3.50
147 148 1.542187 GGAGCTTACACGTGGGACCT 61.542 60.000 21.57 10.48 0.00 3.85
148 149 1.079336 GGAGCTTACACGTGGGACC 60.079 63.158 21.57 10.18 0.00 4.46
149 150 1.445582 CGGAGCTTACACGTGGGAC 60.446 63.158 21.57 6.26 0.00 4.46
150 151 2.642254 CCGGAGCTTACACGTGGGA 61.642 63.158 21.57 4.16 0.00 4.37
151 152 2.125673 CCGGAGCTTACACGTGGG 60.126 66.667 21.57 10.57 0.00 4.61
152 153 1.445582 GTCCGGAGCTTACACGTGG 60.446 63.158 21.57 2.89 0.00 4.94
153 154 1.445582 GGTCCGGAGCTTACACGTG 60.446 63.158 26.19 15.48 0.00 4.49
154 155 2.643232 GGGTCCGGAGCTTACACGT 61.643 63.158 31.09 0.00 0.00 4.49
155 156 2.183555 GGGTCCGGAGCTTACACG 59.816 66.667 31.09 0.00 0.00 4.49
156 157 0.971447 AGAGGGTCCGGAGCTTACAC 60.971 60.000 31.09 15.44 0.00 2.90
157 158 0.627451 TAGAGGGTCCGGAGCTTACA 59.373 55.000 31.09 13.50 0.00 2.41
158 159 1.031235 GTAGAGGGTCCGGAGCTTAC 58.969 60.000 31.09 24.31 0.00 2.34
159 160 0.106318 GGTAGAGGGTCCGGAGCTTA 60.106 60.000 31.09 18.51 0.00 3.09
160 161 1.381463 GGTAGAGGGTCCGGAGCTT 60.381 63.158 31.09 25.73 0.00 3.74
161 162 2.279408 GGTAGAGGGTCCGGAGCT 59.721 66.667 31.09 18.11 0.00 4.09
162 163 2.043248 TGGTAGAGGGTCCGGAGC 60.043 66.667 25.56 25.56 0.00 4.70
163 164 0.549950 TAGTGGTAGAGGGTCCGGAG 59.450 60.000 3.06 0.00 0.00 4.63
164 165 1.002069 TTAGTGGTAGAGGGTCCGGA 58.998 55.000 0.00 0.00 0.00 5.14
165 166 1.109609 GTTAGTGGTAGAGGGTCCGG 58.890 60.000 0.00 0.00 0.00 5.14
166 167 0.737219 CGTTAGTGGTAGAGGGTCCG 59.263 60.000 0.00 0.00 0.00 4.79
167 168 1.109609 CCGTTAGTGGTAGAGGGTCC 58.890 60.000 0.00 0.00 0.00 4.46
168 169 0.459078 GCCGTTAGTGGTAGAGGGTC 59.541 60.000 0.00 0.00 0.00 4.46
169 170 0.251922 TGCCGTTAGTGGTAGAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
170 171 0.899720 TTGCCGTTAGTGGTAGAGGG 59.100 55.000 0.00 0.00 0.00 4.30
171 172 2.981859 ATTGCCGTTAGTGGTAGAGG 57.018 50.000 0.00 0.00 0.00 3.69
172 173 4.608951 GTCTATTGCCGTTAGTGGTAGAG 58.391 47.826 0.00 0.00 0.00 2.43
173 174 3.065786 CGTCTATTGCCGTTAGTGGTAGA 59.934 47.826 0.00 0.00 0.00 2.59
174 175 3.369385 CGTCTATTGCCGTTAGTGGTAG 58.631 50.000 0.00 0.00 0.00 3.18
175 176 2.099592 CCGTCTATTGCCGTTAGTGGTA 59.900 50.000 0.00 0.00 0.00 3.25
176 177 1.134907 CCGTCTATTGCCGTTAGTGGT 60.135 52.381 0.00 0.00 0.00 4.16
177 178 1.135527 TCCGTCTATTGCCGTTAGTGG 59.864 52.381 0.00 0.00 0.00 4.00
178 179 2.572191 TCCGTCTATTGCCGTTAGTG 57.428 50.000 0.00 0.00 0.00 2.74
179 180 3.454375 CATTCCGTCTATTGCCGTTAGT 58.546 45.455 0.00 0.00 0.00 2.24
180 181 2.800544 CCATTCCGTCTATTGCCGTTAG 59.199 50.000 0.00 0.00 0.00 2.34
181 182 2.431419 TCCATTCCGTCTATTGCCGTTA 59.569 45.455 0.00 0.00 0.00 3.18
182 183 1.208535 TCCATTCCGTCTATTGCCGTT 59.791 47.619 0.00 0.00 0.00 4.44
183 184 0.828022 TCCATTCCGTCTATTGCCGT 59.172 50.000 0.00 0.00 0.00 5.68
184 185 1.217882 GTCCATTCCGTCTATTGCCG 58.782 55.000 0.00 0.00 0.00 5.69
185 186 1.594331 GGTCCATTCCGTCTATTGCC 58.406 55.000 0.00 0.00 0.00 4.52
186 187 1.134220 TGGGTCCATTCCGTCTATTGC 60.134 52.381 0.00 0.00 0.00 3.56
187 188 3.275617 TTGGGTCCATTCCGTCTATTG 57.724 47.619 0.00 0.00 0.00 1.90
188 189 4.014406 GTTTTGGGTCCATTCCGTCTATT 58.986 43.478 0.00 0.00 0.00 1.73
189 190 3.265995 AGTTTTGGGTCCATTCCGTCTAT 59.734 43.478 0.00 0.00 0.00 1.98
190 191 2.640826 AGTTTTGGGTCCATTCCGTCTA 59.359 45.455 0.00 0.00 0.00 2.59
191 192 1.423921 AGTTTTGGGTCCATTCCGTCT 59.576 47.619 0.00 0.00 0.00 4.18
192 193 1.539827 CAGTTTTGGGTCCATTCCGTC 59.460 52.381 0.00 0.00 0.00 4.79
193 194 1.616159 CAGTTTTGGGTCCATTCCGT 58.384 50.000 0.00 0.00 0.00 4.69
194 195 0.243636 GCAGTTTTGGGTCCATTCCG 59.756 55.000 0.00 0.00 0.00 4.30
195 196 0.608130 GGCAGTTTTGGGTCCATTCC 59.392 55.000 0.00 0.00 0.00 3.01
196 197 0.608130 GGGCAGTTTTGGGTCCATTC 59.392 55.000 0.00 0.00 0.00 2.67
197 198 1.184970 CGGGCAGTTTTGGGTCCATT 61.185 55.000 0.00 0.00 0.00 3.16
198 199 1.606313 CGGGCAGTTTTGGGTCCAT 60.606 57.895 0.00 0.00 0.00 3.41
199 200 2.203422 CGGGCAGTTTTGGGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
200 201 1.830847 AACGGGCAGTTTTGGGTCC 60.831 57.895 0.00 0.00 40.88 4.46
201 202 3.850508 AACGGGCAGTTTTGGGTC 58.149 55.556 0.00 0.00 40.88 4.46
213 214 0.519961 CTTTTACGAGGCCAAACGGG 59.480 55.000 18.10 0.00 40.85 5.28
214 215 1.232119 ACTTTTACGAGGCCAAACGG 58.768 50.000 18.10 5.64 0.00 4.44
215 216 3.062042 ACTACTTTTACGAGGCCAAACG 58.938 45.455 5.01 10.64 0.00 3.60
216 217 4.779987 CAACTACTTTTACGAGGCCAAAC 58.220 43.478 5.01 0.00 0.00 2.93
217 218 3.251487 GCAACTACTTTTACGAGGCCAAA 59.749 43.478 5.01 0.00 0.00 3.28
218 219 2.809696 GCAACTACTTTTACGAGGCCAA 59.190 45.455 5.01 0.00 0.00 4.52
219 220 2.419667 GCAACTACTTTTACGAGGCCA 58.580 47.619 5.01 0.00 0.00 5.36
220 221 1.392510 CGCAACTACTTTTACGAGGCC 59.607 52.381 0.00 0.00 0.00 5.19
221 222 1.201888 GCGCAACTACTTTTACGAGGC 60.202 52.381 0.30 0.00 0.00 4.70
222 223 2.063266 TGCGCAACTACTTTTACGAGG 58.937 47.619 8.16 0.00 0.00 4.63
223 224 2.159881 GGTGCGCAACTACTTTTACGAG 60.160 50.000 20.55 0.00 0.00 4.18
224 225 1.794116 GGTGCGCAACTACTTTTACGA 59.206 47.619 20.55 0.00 0.00 3.43
225 226 1.796459 AGGTGCGCAACTACTTTTACG 59.204 47.619 30.01 0.00 0.00 3.18
226 227 2.803956 TCAGGTGCGCAACTACTTTTAC 59.196 45.455 30.53 2.70 0.00 2.01
227 228 3.064207 CTCAGGTGCGCAACTACTTTTA 58.936 45.455 30.53 8.53 0.00 1.52
228 229 1.873591 CTCAGGTGCGCAACTACTTTT 59.126 47.619 30.53 1.00 0.00 2.27
229 230 1.512926 CTCAGGTGCGCAACTACTTT 58.487 50.000 30.53 1.96 0.00 2.66
230 231 0.320771 CCTCAGGTGCGCAACTACTT 60.321 55.000 30.53 2.45 0.00 2.24
231 232 1.293498 CCTCAGGTGCGCAACTACT 59.707 57.895 30.53 13.55 0.00 2.57
232 233 1.741770 CCCTCAGGTGCGCAACTAC 60.742 63.158 30.53 11.22 0.00 2.73
233 234 2.662596 CCCTCAGGTGCGCAACTA 59.337 61.111 30.53 15.53 0.00 2.24
236 237 4.577677 TTGCCCTCAGGTGCGCAA 62.578 61.111 14.00 1.93 38.82 4.85
237 238 4.577677 TTTGCCCTCAGGTGCGCA 62.578 61.111 5.66 5.66 34.57 6.09
238 239 3.294493 TTTTGCCCTCAGGTGCGC 61.294 61.111 0.00 0.00 34.57 6.09
239 240 1.898574 AGTTTTGCCCTCAGGTGCG 60.899 57.895 0.00 0.00 34.57 5.34
240 241 0.823356 TCAGTTTTGCCCTCAGGTGC 60.823 55.000 0.00 0.00 34.57 5.01
241 242 1.242076 CTCAGTTTTGCCCTCAGGTG 58.758 55.000 0.00 0.00 34.57 4.00
242 243 0.538287 GCTCAGTTTTGCCCTCAGGT 60.538 55.000 0.00 0.00 34.57 4.00
243 244 0.538057 TGCTCAGTTTTGCCCTCAGG 60.538 55.000 0.00 0.00 0.00 3.86
244 245 0.595095 GTGCTCAGTTTTGCCCTCAG 59.405 55.000 0.00 0.00 0.00 3.35
245 246 0.106769 TGTGCTCAGTTTTGCCCTCA 60.107 50.000 0.00 0.00 0.00 3.86
246 247 1.068055 CATGTGCTCAGTTTTGCCCTC 60.068 52.381 0.00 0.00 0.00 4.30
247 248 0.963962 CATGTGCTCAGTTTTGCCCT 59.036 50.000 0.00 0.00 0.00 5.19
248 249 0.961019 TCATGTGCTCAGTTTTGCCC 59.039 50.000 0.00 0.00 0.00 5.36
249 250 2.223782 TGTTCATGTGCTCAGTTTTGCC 60.224 45.455 0.00 0.00 0.00 4.52
250 251 2.791004 GTGTTCATGTGCTCAGTTTTGC 59.209 45.455 0.00 0.00 0.00 3.68
251 252 3.181488 TGGTGTTCATGTGCTCAGTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
252 253 3.023119 TGGTGTTCATGTGCTCAGTTTT 58.977 40.909 0.00 0.00 0.00 2.43
253 254 2.358898 GTGGTGTTCATGTGCTCAGTTT 59.641 45.455 0.00 0.00 0.00 2.66
254 255 1.949525 GTGGTGTTCATGTGCTCAGTT 59.050 47.619 0.00 0.00 0.00 3.16
255 256 1.141657 AGTGGTGTTCATGTGCTCAGT 59.858 47.619 0.00 0.00 0.00 3.41
256 257 1.888215 AGTGGTGTTCATGTGCTCAG 58.112 50.000 0.00 0.00 0.00 3.35
257 258 3.402110 CTTAGTGGTGTTCATGTGCTCA 58.598 45.455 0.00 0.00 0.00 4.26
258 259 2.744202 CCTTAGTGGTGTTCATGTGCTC 59.256 50.000 0.00 0.00 0.00 4.26
259 260 2.553028 CCCTTAGTGGTGTTCATGTGCT 60.553 50.000 0.00 0.00 0.00 4.40
260 261 1.812571 CCCTTAGTGGTGTTCATGTGC 59.187 52.381 0.00 0.00 0.00 4.57
261 262 1.812571 GCCCTTAGTGGTGTTCATGTG 59.187 52.381 0.00 0.00 0.00 3.21
262 263 1.423541 TGCCCTTAGTGGTGTTCATGT 59.576 47.619 0.00 0.00 0.00 3.21
263 264 2.198827 TGCCCTTAGTGGTGTTCATG 57.801 50.000 0.00 0.00 0.00 3.07
264 265 2.969821 TTGCCCTTAGTGGTGTTCAT 57.030 45.000 0.00 0.00 0.00 2.57
265 266 2.738587 TTTGCCCTTAGTGGTGTTCA 57.261 45.000 0.00 0.00 0.00 3.18
266 267 2.296190 CCTTTTGCCCTTAGTGGTGTTC 59.704 50.000 0.00 0.00 0.00 3.18
267 268 2.091555 TCCTTTTGCCCTTAGTGGTGTT 60.092 45.455 0.00 0.00 0.00 3.32
268 269 1.497286 TCCTTTTGCCCTTAGTGGTGT 59.503 47.619 0.00 0.00 0.00 4.16
269 270 2.286365 TCCTTTTGCCCTTAGTGGTG 57.714 50.000 0.00 0.00 0.00 4.17
270 271 4.668138 TTATCCTTTTGCCCTTAGTGGT 57.332 40.909 0.00 0.00 0.00 4.16
271 272 7.654022 TTAATTATCCTTTTGCCCTTAGTGG 57.346 36.000 0.00 0.00 0.00 4.00
289 290 9.606631 GCAAACCATTACAAATGGGATTAATTA 57.393 29.630 19.92 0.00 43.32 1.40
290 291 8.328014 AGCAAACCATTACAAATGGGATTAATT 58.672 29.630 19.92 4.42 43.32 1.40
291 292 7.860584 AGCAAACCATTACAAATGGGATTAAT 58.139 30.769 19.92 0.00 43.32 1.40
292 293 7.251321 AGCAAACCATTACAAATGGGATTAA 57.749 32.000 19.92 0.00 43.32 1.40
293 294 6.865834 AGCAAACCATTACAAATGGGATTA 57.134 33.333 19.92 0.00 43.32 1.75
294 295 5.760484 AGCAAACCATTACAAATGGGATT 57.240 34.783 19.92 12.71 43.32 3.01
295 296 5.248020 TCAAGCAAACCATTACAAATGGGAT 59.752 36.000 19.92 8.12 43.32 3.85
296 297 4.590647 TCAAGCAAACCATTACAAATGGGA 59.409 37.500 19.92 5.76 43.32 4.37
297 298 4.892433 TCAAGCAAACCATTACAAATGGG 58.108 39.130 19.92 6.39 43.32 4.00
298 299 5.540911 ACTCAAGCAAACCATTACAAATGG 58.459 37.500 15.50 15.50 44.54 3.16
299 300 6.215121 TGACTCAAGCAAACCATTACAAATG 58.785 36.000 0.00 0.00 0.00 2.32
300 301 6.403866 TGACTCAAGCAAACCATTACAAAT 57.596 33.333 0.00 0.00 0.00 2.32
301 302 5.843673 TGACTCAAGCAAACCATTACAAA 57.156 34.783 0.00 0.00 0.00 2.83
302 303 6.040278 TCAATGACTCAAGCAAACCATTACAA 59.960 34.615 0.00 0.00 0.00 2.41
303 304 5.534278 TCAATGACTCAAGCAAACCATTACA 59.466 36.000 0.00 0.00 0.00 2.41
304 305 6.012658 TCAATGACTCAAGCAAACCATTAC 57.987 37.500 0.00 0.00 0.00 1.89
305 306 6.350361 CCATCAATGACTCAAGCAAACCATTA 60.350 38.462 0.00 0.00 0.00 1.90
306 307 5.475719 CATCAATGACTCAAGCAAACCATT 58.524 37.500 0.00 0.00 0.00 3.16
307 308 4.081862 CCATCAATGACTCAAGCAAACCAT 60.082 41.667 0.00 0.00 0.00 3.55
308 309 3.256383 CCATCAATGACTCAAGCAAACCA 59.744 43.478 0.00 0.00 0.00 3.67
309 310 3.507233 TCCATCAATGACTCAAGCAAACC 59.493 43.478 0.00 0.00 0.00 3.27
310 311 4.771590 TCCATCAATGACTCAAGCAAAC 57.228 40.909 0.00 0.00 0.00 2.93
311 312 4.219070 CCTTCCATCAATGACTCAAGCAAA 59.781 41.667 0.00 0.00 0.00 3.68
312 313 3.760151 CCTTCCATCAATGACTCAAGCAA 59.240 43.478 0.00 0.00 0.00 3.91
313 314 3.009363 TCCTTCCATCAATGACTCAAGCA 59.991 43.478 0.00 0.00 0.00 3.91
314 315 3.614092 TCCTTCCATCAATGACTCAAGC 58.386 45.455 0.00 0.00 0.00 4.01
315 316 5.095145 TCTCCTTCCATCAATGACTCAAG 57.905 43.478 0.00 0.00 0.00 3.02
316 317 4.779489 TCTCTCCTTCCATCAATGACTCAA 59.221 41.667 0.00 0.00 0.00 3.02
317 318 4.356436 TCTCTCCTTCCATCAATGACTCA 58.644 43.478 0.00 0.00 0.00 3.41
318 319 5.549742 ATCTCTCCTTCCATCAATGACTC 57.450 43.478 0.00 0.00 0.00 3.36
319 320 5.010516 CGTATCTCTCCTTCCATCAATGACT 59.989 44.000 0.00 0.00 0.00 3.41
320 321 5.221342 ACGTATCTCTCCTTCCATCAATGAC 60.221 44.000 0.00 0.00 0.00 3.06
321 322 4.895889 ACGTATCTCTCCTTCCATCAATGA 59.104 41.667 0.00 0.00 0.00 2.57
322 323 5.207110 ACGTATCTCTCCTTCCATCAATG 57.793 43.478 0.00 0.00 0.00 2.82
323 324 5.048643 CGTACGTATCTCTCCTTCCATCAAT 60.049 44.000 7.22 0.00 0.00 2.57
324 325 4.275196 CGTACGTATCTCTCCTTCCATCAA 59.725 45.833 7.22 0.00 0.00 2.57
325 326 3.813724 CGTACGTATCTCTCCTTCCATCA 59.186 47.826 7.22 0.00 0.00 3.07
326 327 3.814283 ACGTACGTATCTCTCCTTCCATC 59.186 47.826 21.41 0.00 0.00 3.51
327 328 3.818180 ACGTACGTATCTCTCCTTCCAT 58.182 45.455 21.41 0.00 0.00 3.41
328 329 3.272574 ACGTACGTATCTCTCCTTCCA 57.727 47.619 21.41 0.00 0.00 3.53
329 330 4.629251 AAACGTACGTATCTCTCCTTCC 57.371 45.455 23.12 0.00 0.00 3.46
330 331 8.626093 ATTAAAAACGTACGTATCTCTCCTTC 57.374 34.615 23.12 0.00 0.00 3.46
331 332 8.866956 CAATTAAAAACGTACGTATCTCTCCTT 58.133 33.333 23.12 6.61 0.00 3.36
332 333 8.031277 ACAATTAAAAACGTACGTATCTCTCCT 58.969 33.333 23.12 0.00 0.00 3.69
333 334 8.177980 ACAATTAAAAACGTACGTATCTCTCC 57.822 34.615 23.12 0.00 0.00 3.71
335 336 9.801714 CAAACAATTAAAAACGTACGTATCTCT 57.198 29.630 23.12 1.84 0.00 3.10
336 337 8.561503 GCAAACAATTAAAAACGTACGTATCTC 58.438 33.333 23.12 0.00 0.00 2.75
337 338 8.068977 TGCAAACAATTAAAAACGTACGTATCT 58.931 29.630 23.12 11.06 0.00 1.98
338 339 8.201852 TGCAAACAATTAAAAACGTACGTATC 57.798 30.769 23.12 0.00 0.00 2.24
339 340 8.631695 CATGCAAACAATTAAAAACGTACGTAT 58.368 29.630 23.12 11.18 0.00 3.06
340 341 7.642978 ACATGCAAACAATTAAAAACGTACGTA 59.357 29.630 23.12 5.71 0.00 3.57
341 342 6.472808 ACATGCAAACAATTAAAAACGTACGT 59.527 30.769 16.72 16.72 0.00 3.57
342 343 6.778642 CACATGCAAACAATTAAAAACGTACG 59.221 34.615 15.01 15.01 0.00 3.67
343 344 7.832550 TCACATGCAAACAATTAAAAACGTAC 58.167 30.769 0.00 0.00 0.00 3.67
344 345 7.987268 TCACATGCAAACAATTAAAAACGTA 57.013 28.000 0.00 0.00 0.00 3.57
345 346 6.893958 TCACATGCAAACAATTAAAAACGT 57.106 29.167 0.00 0.00 0.00 3.99
346 347 6.791299 CCATCACATGCAAACAATTAAAAACG 59.209 34.615 0.00 0.00 0.00 3.60
347 348 7.041508 TCCCATCACATGCAAACAATTAAAAAC 60.042 33.333 0.00 0.00 0.00 2.43
348 349 6.994496 TCCCATCACATGCAAACAATTAAAAA 59.006 30.769 0.00 0.00 0.00 1.94
349 350 6.528321 TCCCATCACATGCAAACAATTAAAA 58.472 32.000 0.00 0.00 0.00 1.52
350 351 6.106648 TCCCATCACATGCAAACAATTAAA 57.893 33.333 0.00 0.00 0.00 1.52
351 352 5.735285 TCCCATCACATGCAAACAATTAA 57.265 34.783 0.00 0.00 0.00 1.40
352 353 5.735285 TTCCCATCACATGCAAACAATTA 57.265 34.783 0.00 0.00 0.00 1.40
353 354 4.620589 TTCCCATCACATGCAAACAATT 57.379 36.364 0.00 0.00 0.00 2.32
354 355 4.829872 ATTCCCATCACATGCAAACAAT 57.170 36.364 0.00 0.00 0.00 2.71
355 356 4.040095 TGAATTCCCATCACATGCAAACAA 59.960 37.500 2.27 0.00 0.00 2.83
356 357 3.577415 TGAATTCCCATCACATGCAAACA 59.423 39.130 2.27 0.00 0.00 2.83
357 358 3.928375 GTGAATTCCCATCACATGCAAAC 59.072 43.478 2.27 0.00 45.13 2.93
358 359 3.367190 CGTGAATTCCCATCACATGCAAA 60.367 43.478 2.27 0.00 45.90 3.68
359 360 2.164017 CGTGAATTCCCATCACATGCAA 59.836 45.455 2.27 0.00 45.90 4.08
360 361 1.744522 CGTGAATTCCCATCACATGCA 59.255 47.619 2.27 0.00 45.90 3.96
361 362 1.745087 ACGTGAATTCCCATCACATGC 59.255 47.619 2.27 0.00 45.90 4.06
362 363 3.439825 TCAACGTGAATTCCCATCACATG 59.560 43.478 2.27 0.00 45.90 3.21
363 364 3.684908 TCAACGTGAATTCCCATCACAT 58.315 40.909 2.27 0.00 45.90 3.21
364 365 3.133141 TCAACGTGAATTCCCATCACA 57.867 42.857 2.27 0.00 45.90 3.58
365 366 3.502211 AGTTCAACGTGAATTCCCATCAC 59.498 43.478 2.27 0.00 38.79 3.06
366 367 3.750371 AGTTCAACGTGAATTCCCATCA 58.250 40.909 2.27 0.00 38.79 3.07
367 368 6.436843 AATAGTTCAACGTGAATTCCCATC 57.563 37.500 2.27 0.00 38.79 3.51
368 369 6.208599 ACAAATAGTTCAACGTGAATTCCCAT 59.791 34.615 2.27 0.00 38.79 4.00
369 370 5.533154 ACAAATAGTTCAACGTGAATTCCCA 59.467 36.000 2.27 0.00 38.79 4.37
370 371 6.009115 ACAAATAGTTCAACGTGAATTCCC 57.991 37.500 2.27 0.00 38.79 3.97
371 372 5.788531 CGACAAATAGTTCAACGTGAATTCC 59.211 40.000 2.27 0.00 38.79 3.01
372 373 5.280678 GCGACAAATAGTTCAACGTGAATTC 59.719 40.000 0.00 0.00 38.79 2.17
373 374 5.144359 GCGACAAATAGTTCAACGTGAATT 58.856 37.500 0.00 0.00 38.79 2.17
374 375 4.665645 CGCGACAAATAGTTCAACGTGAAT 60.666 41.667 0.00 0.00 38.79 2.57
375 376 3.362207 CGCGACAAATAGTTCAACGTGAA 60.362 43.478 0.00 0.00 33.32 3.18
376 377 2.154198 CGCGACAAATAGTTCAACGTGA 59.846 45.455 0.00 0.00 32.83 4.35
377 378 2.154198 TCGCGACAAATAGTTCAACGTG 59.846 45.455 3.71 0.00 0.00 4.49
378 379 2.154389 GTCGCGACAAATAGTTCAACGT 59.846 45.455 33.09 0.00 0.00 3.99
379 380 2.154198 TGTCGCGACAAATAGTTCAACG 59.846 45.455 37.68 0.00 38.56 4.10
380 381 3.781341 TGTCGCGACAAATAGTTCAAC 57.219 42.857 37.68 9.18 38.56 3.18
391 392 1.000052 TGTCTGGTTATTGTCGCGACA 60.000 47.619 36.40 36.40 39.98 4.35
392 393 1.705256 TGTCTGGTTATTGTCGCGAC 58.295 50.000 31.66 31.66 0.00 5.19
393 394 2.442212 TTGTCTGGTTATTGTCGCGA 57.558 45.000 3.71 3.71 0.00 5.87
394 395 3.740044 ATTTGTCTGGTTATTGTCGCG 57.260 42.857 0.00 0.00 0.00 5.87
395 396 5.296813 AGAATTTGTCTGGTTATTGTCGC 57.703 39.130 0.00 0.00 34.29 5.19
536 540 1.599542 GGCGGACATGCTCACTAAATC 59.400 52.381 0.00 0.00 34.52 2.17
603 614 2.097036 TCCGCTACGATTCCTTCTGAA 58.903 47.619 0.00 0.00 37.38 3.02
637 648 0.187361 TGGCCCTAACCTGCACTTTT 59.813 50.000 0.00 0.00 0.00 2.27
677 720 7.881643 AGCTAAGACTAATCGCAATTAGATG 57.118 36.000 11.38 0.00 44.87 2.90
716 761 6.779115 AAACCATTGAAAGGTATTTTTCGC 57.221 33.333 0.00 0.00 38.76 4.70
723 768 5.306678 TGCCTGAAAAACCATTGAAAGGTAT 59.693 36.000 0.00 0.00 38.76 2.73
749 794 3.289834 CCATGCATACAGCCGCCC 61.290 66.667 0.00 0.00 44.83 6.13
750 795 3.289834 CCCATGCATACAGCCGCC 61.290 66.667 0.00 0.00 44.83 6.13
751 796 3.289834 CCCCATGCATACAGCCGC 61.290 66.667 0.00 0.00 44.83 6.53
818 1070 5.770663 ACTTGTACTAGCTCTCTTGTCTCAA 59.229 40.000 4.10 0.00 31.09 3.02
983 1301 6.247229 AGGGCATATGTGTCTGTTATGTTA 57.753 37.500 4.29 0.00 0.00 2.41
2498 4789 2.187707 CTGGCGCAATTTGTAGAATGC 58.812 47.619 10.83 0.00 35.49 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.