Multiple sequence alignment - TraesCS1B01G069200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G069200 chr1B 100.000 5067 0 0 1 5067 54137347 54132281 0.000000e+00 9358.0
1 TraesCS1B01G069200 chr1B 87.234 1222 124 13 3692 4902 54117286 54116086 0.000000e+00 1363.0
2 TraesCS1B01G069200 chr1B 94.476 887 33 7 3107 3977 54952270 54951384 0.000000e+00 1352.0
3 TraesCS1B01G069200 chr1B 94.250 887 34 8 3107 3977 54993233 54992348 0.000000e+00 1339.0
4 TraesCS1B01G069200 chr1B 83.884 1272 79 53 792 2000 55004557 55003349 0.000000e+00 1098.0
5 TraesCS1B01G069200 chr1B 83.006 1271 80 52 792 2000 54961271 54960075 0.000000e+00 1026.0
6 TraesCS1B01G069200 chr1B 100.000 395 0 0 5508 5902 54131840 54131446 0.000000e+00 730.0
7 TraesCS1B01G069200 chr1B 96.505 372 13 0 3575 3946 53929096 53928725 3.020000e-172 616.0
8 TraesCS1B01G069200 chr1B 94.721 341 18 0 2742 3082 186131893 186132233 1.130000e-146 531.0
9 TraesCS1B01G069200 chr1B 84.267 464 40 21 2305 2741 54993758 54993301 7.070000e-114 422.0
10 TraesCS1B01G069200 chr1B 90.062 322 20 7 1985 2304 54960056 54959745 1.980000e-109 407.0
11 TraesCS1B01G069200 chr1B 83.262 466 48 17 4469 4920 54924391 54923942 9.210000e-108 401.0
12 TraesCS1B01G069200 chr1B 83.262 466 48 17 4469 4920 54941307 54940858 9.210000e-108 401.0
13 TraesCS1B01G069200 chr1B 83.405 464 44 21 2305 2741 54952795 54952338 3.310000e-107 399.0
14 TraesCS1B01G069200 chr1B 89.441 322 22 7 1985 2304 55003328 55003017 4.290000e-106 396.0
15 TraesCS1B01G069200 chr1B 97.351 151 4 0 563 713 54136635 54136485 2.110000e-64 257.0
16 TraesCS1B01G069200 chr1B 97.351 151 4 0 713 863 54136785 54136635 2.110000e-64 257.0
17 TraesCS1B01G069200 chr1B 96.053 76 3 0 3085 3160 54952343 54952268 2.230000e-24 124.0
18 TraesCS1B01G069200 chr1B 96.053 76 3 0 3085 3160 54993306 54993231 2.230000e-24 124.0
19 TraesCS1B01G069200 chr1B 93.506 77 5 0 1 77 365457298 365457222 1.340000e-21 115.0
20 TraesCS1B01G069200 chr1A 94.086 1843 56 23 3083 4906 34408169 34406361 0.000000e+00 2750.0
21 TraesCS1B01G069200 chr1A 83.451 1976 126 79 885 2741 34410055 34408162 0.000000e+00 1652.0
22 TraesCS1B01G069200 chr1A 90.614 586 50 5 46 628 430184296 430183713 0.000000e+00 773.0
23 TraesCS1B01G069200 chr1A 91.045 67 5 1 713 778 492655882 492655948 8.150000e-14 89.8
24 TraesCS1B01G069200 chr1A 100.000 28 0 0 3245 3272 60740672 60740699 1.100000e-02 52.8
25 TraesCS1B01G069200 chr1D 95.831 1607 54 6 3471 5067 35650870 35649267 0.000000e+00 2584.0
26 TraesCS1B01G069200 chr1D 88.622 1459 135 19 3481 4920 35640841 35639395 0.000000e+00 1746.0
27 TraesCS1B01G069200 chr1D 86.889 1167 73 29 1644 2741 35653291 35652136 0.000000e+00 1234.0
28 TraesCS1B01G069200 chr1D 93.909 394 22 1 5509 5902 35649124 35648733 1.420000e-165 593.0
29 TraesCS1B01G069200 chr1D 89.722 467 31 8 838 1300 35654564 35654111 1.100000e-161 580.0
30 TraesCS1B01G069200 chr1D 92.405 395 25 4 3085 3474 35652141 35651747 5.170000e-155 558.0
31 TraesCS1B01G069200 chr1D 82.512 406 49 10 947 1351 35645700 35645316 2.640000e-88 337.0
32 TraesCS1B01G069200 chr1D 85.366 164 24 0 1180 1343 102533616 102533453 2.830000e-38 171.0
33 TraesCS1B01G069200 chr1D 77.095 179 19 11 1373 1536 35653563 35653392 3.790000e-12 84.2
34 TraesCS1B01G069200 chr3B 91.126 586 48 4 46 628 24829408 24828824 0.000000e+00 791.0
35 TraesCS1B01G069200 chr3B 82.111 559 88 12 78 629 641672785 641673338 8.960000e-128 468.0
36 TraesCS1B01G069200 chr3B 97.297 74 2 0 2 75 780442104 780442031 6.210000e-25 126.0
37 TraesCS1B01G069200 chr6B 90.136 588 52 5 46 628 673827597 673828183 0.000000e+00 760.0
38 TraesCS1B01G069200 chr6B 92.798 361 25 1 2733 3092 691677222 691677582 6.780000e-144 521.0
39 TraesCS1B01G069200 chr6B 87.179 156 18 2 1180 1334 46531659 46531505 6.080000e-40 176.0
40 TraesCS1B01G069200 chr6B 91.111 45 3 1 3235 3279 72388597 72388554 6.390000e-05 60.2
41 TraesCS1B01G069200 chr7B 89.643 589 53 8 46 628 468420928 468420342 0.000000e+00 743.0
42 TraesCS1B01G069200 chr7B 88.869 557 54 7 76 628 682234204 682234756 0.000000e+00 678.0
43 TraesCS1B01G069200 chr7B 96.481 341 12 0 2742 3082 414158576 414158236 1.110000e-156 564.0
44 TraesCS1B01G069200 chr7B 95.308 341 16 0 2742 3082 427733324 427732984 5.200000e-150 542.0
45 TraesCS1B01G069200 chr4B 87.842 584 46 9 46 628 398561820 398562379 0.000000e+00 662.0
46 TraesCS1B01G069200 chr4B 94.444 342 19 0 2742 3083 446449139 446448798 1.460000e-145 527.0
47 TraesCS1B01G069200 chr4B 93.966 348 20 1 2735 3082 76791881 76791535 5.240000e-145 525.0
48 TraesCS1B01G069200 chr6A 84.324 555 83 4 78 628 288013141 288013695 1.870000e-149 540.0
49 TraesCS1B01G069200 chr6A 86.250 160 17 3 1178 1333 26815965 26815807 1.020000e-37 169.0
50 TraesCS1B01G069200 chr2B 94.721 341 18 0 2742 3082 629913616 629913276 1.130000e-146 531.0
51 TraesCS1B01G069200 chr2B 93.948 347 19 2 2739 3084 171009572 171009917 1.880000e-144 523.0
52 TraesCS1B01G069200 chr2B 96.000 75 3 0 1 75 764287324 764287398 8.030000e-24 122.0
53 TraesCS1B01G069200 chr6D 94.203 345 20 0 2739 3083 8562837 8563181 1.460000e-145 527.0
54 TraesCS1B01G069200 chr5D 83.935 554 81 7 78 628 398569701 398570249 1.880000e-144 523.0
55 TraesCS1B01G069200 chr5D 97.333 75 2 0 1 75 85568628 85568554 1.730000e-25 128.0
56 TraesCS1B01G069200 chr5D 97.333 75 2 0 1 75 85569222 85569148 1.730000e-25 128.0
57 TraesCS1B01G069200 chr5D 97.333 75 2 0 1 75 85569816 85569742 1.730000e-25 128.0
58 TraesCS1B01G069200 chr5D 97.333 75 2 0 1 75 85570432 85570358 1.730000e-25 128.0
59 TraesCS1B01G069200 chrUn 84.756 164 20 3 1178 1337 95444656 95444494 6.120000e-35 159.0
60 TraesCS1B01G069200 chr5B 96.000 75 3 0 1 75 512946156 512946082 8.030000e-24 122.0
61 TraesCS1B01G069200 chr4D 93.333 75 5 0 1 75 471824327 471824401 1.740000e-20 111.0
62 TraesCS1B01G069200 chr4D 91.045 67 5 1 713 778 397673408 397673342 8.150000e-14 89.8
63 TraesCS1B01G069200 chr4D 88.060 67 7 1 713 778 35613042 35612976 1.760000e-10 78.7
64 TraesCS1B01G069200 chr7D 92.537 67 4 1 713 778 45285430 45285496 1.750000e-15 95.3
65 TraesCS1B01G069200 chr7D 91.045 67 5 1 713 778 45284104 45284170 8.150000e-14 89.8
66 TraesCS1B01G069200 chr4A 88.000 75 8 1 713 786 616571166 616571092 2.930000e-13 87.9
67 TraesCS1B01G069200 chr2A 88.235 68 7 1 713 779 628678726 628678659 4.900000e-11 80.5
68 TraesCS1B01G069200 chr5A 88.060 67 7 1 713 778 282988527 282988593 1.760000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G069200 chr1B 54131446 54137347 5901 True 2650.500000 9358 98.675500 1 5902 4 chr1B.!!$R6 5901
1 TraesCS1B01G069200 chr1B 54116086 54117286 1200 True 1363.000000 1363 87.234000 3692 4902 1 chr1B.!!$R2 1210
2 TraesCS1B01G069200 chr1B 55003017 55004557 1540 True 747.000000 1098 86.662500 792 2304 2 chr1B.!!$R10 1512
3 TraesCS1B01G069200 chr1B 54959745 54961271 1526 True 716.500000 1026 86.534000 792 2304 2 chr1B.!!$R8 1512
4 TraesCS1B01G069200 chr1B 54992348 54993758 1410 True 628.333333 1339 91.523333 2305 3977 3 chr1B.!!$R9 1672
5 TraesCS1B01G069200 chr1B 54951384 54952795 1411 True 625.000000 1352 91.311333 2305 3977 3 chr1B.!!$R7 1672
6 TraesCS1B01G069200 chr1A 34406361 34410055 3694 True 2201.000000 2750 88.768500 885 4906 2 chr1A.!!$R2 4021
7 TraesCS1B01G069200 chr1A 430183713 430184296 583 True 773.000000 773 90.614000 46 628 1 chr1A.!!$R1 582
8 TraesCS1B01G069200 chr1D 35639395 35640841 1446 True 1746.000000 1746 88.622000 3481 4920 1 chr1D.!!$R1 1439
9 TraesCS1B01G069200 chr1D 35645316 35654564 9248 True 852.885714 2584 88.337571 838 5902 7 chr1D.!!$R3 5064
10 TraesCS1B01G069200 chr3B 24828824 24829408 584 True 791.000000 791 91.126000 46 628 1 chr3B.!!$R1 582
11 TraesCS1B01G069200 chr3B 641672785 641673338 553 False 468.000000 468 82.111000 78 629 1 chr3B.!!$F1 551
12 TraesCS1B01G069200 chr6B 673827597 673828183 586 False 760.000000 760 90.136000 46 628 1 chr6B.!!$F1 582
13 TraesCS1B01G069200 chr7B 468420342 468420928 586 True 743.000000 743 89.643000 46 628 1 chr7B.!!$R3 582
14 TraesCS1B01G069200 chr7B 682234204 682234756 552 False 678.000000 678 88.869000 76 628 1 chr7B.!!$F1 552
15 TraesCS1B01G069200 chr4B 398561820 398562379 559 False 662.000000 662 87.842000 46 628 1 chr4B.!!$F1 582
16 TraesCS1B01G069200 chr6A 288013141 288013695 554 False 540.000000 540 84.324000 78 628 1 chr6A.!!$F1 550
17 TraesCS1B01G069200 chr5D 398569701 398570249 548 False 523.000000 523 83.935000 78 628 1 chr5D.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 727 0.041090 ACTCGGCCCAAATCCCAAAT 59.959 50.0 0.00 0.00 0.00 2.32 F
1594 2143 0.391661 TCATTCGAGTGAAGCCAGCC 60.392 55.0 8.32 0.00 37.57 4.85 F
2741 3478 0.107654 GTCAGAGGGCGCCTACAATT 60.108 55.0 28.56 5.06 31.76 2.32 F
2944 3681 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.0 0.00 0.00 0.00 3.61 F
2946 3683 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.0 0.00 0.00 41.25 4.35 F
2980 3717 0.178992 TGGTGGGCTCAAAAGTCAGG 60.179 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 2307 0.107066 CCTGCCTACCATCATGTGCA 60.107 55.000 0.0 0.0 0.00 4.57 R
2925 3662 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.0 0.0 44.03 4.52 R
4676 6400 0.795698 CGCAACACGTCATCAATGGA 59.204 50.000 0.0 0.0 36.87 3.41 R
4844 6568 2.171237 TGGTCTGGAATATGTGGAGCTG 59.829 50.000 0.0 0.0 0.00 4.24 R
4851 6575 4.574674 TGAGCTTTGGTCTGGAATATGT 57.425 40.909 0.0 0.0 0.00 2.29 R
4961 6685 4.089361 CAGCCCCAAATAGGAGAAAAACT 58.911 43.478 0.0 0.0 41.22 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.123545 GGCCCATTACGTGCCCCT 62.124 66.667 0.00 0.00 39.30 4.79
24 25 2.828549 GCCCATTACGTGCCCCTG 60.829 66.667 0.00 0.00 0.00 4.45
25 26 2.674754 CCCATTACGTGCCCCTGT 59.325 61.111 0.00 0.00 0.00 4.00
26 27 1.748879 CCCATTACGTGCCCCTGTG 60.749 63.158 0.00 0.00 0.00 3.66
27 28 1.298340 CCATTACGTGCCCCTGTGA 59.702 57.895 0.00 0.00 0.00 3.58
28 29 0.744414 CCATTACGTGCCCCTGTGAG 60.744 60.000 0.00 0.00 0.00 3.51
29 30 1.078426 ATTACGTGCCCCTGTGAGC 60.078 57.895 0.00 0.00 0.00 4.26
30 31 2.852495 ATTACGTGCCCCTGTGAGCG 62.852 60.000 0.00 0.00 0.00 5.03
36 37 4.335647 CCCCTGTGAGCGCCAGTT 62.336 66.667 2.29 0.00 0.00 3.16
37 38 2.281761 CCCTGTGAGCGCCAGTTT 60.282 61.111 2.29 0.00 0.00 2.66
38 39 2.328099 CCCTGTGAGCGCCAGTTTC 61.328 63.158 2.29 0.00 0.00 2.78
39 40 1.302033 CCTGTGAGCGCCAGTTTCT 60.302 57.895 2.29 0.00 0.00 2.52
40 41 1.294659 CCTGTGAGCGCCAGTTTCTC 61.295 60.000 2.29 0.00 0.00 2.87
41 42 0.320247 CTGTGAGCGCCAGTTTCTCT 60.320 55.000 2.29 0.00 0.00 3.10
42 43 0.966179 TGTGAGCGCCAGTTTCTCTA 59.034 50.000 2.29 0.00 0.00 2.43
43 44 1.343142 TGTGAGCGCCAGTTTCTCTAA 59.657 47.619 2.29 0.00 0.00 2.10
44 45 2.028112 TGTGAGCGCCAGTTTCTCTAAT 60.028 45.455 2.29 0.00 0.00 1.73
45 46 2.605366 GTGAGCGCCAGTTTCTCTAATC 59.395 50.000 2.29 0.00 0.00 1.75
46 47 1.855360 GAGCGCCAGTTTCTCTAATCG 59.145 52.381 2.29 0.00 0.00 3.34
47 48 0.931005 GCGCCAGTTTCTCTAATCGG 59.069 55.000 0.00 0.00 0.00 4.18
48 49 0.931005 CGCCAGTTTCTCTAATCGGC 59.069 55.000 0.00 0.00 34.68 5.54
49 50 0.931005 GCCAGTTTCTCTAATCGGCG 59.069 55.000 0.00 0.00 0.00 6.46
50 51 0.931005 CCAGTTTCTCTAATCGGCGC 59.069 55.000 0.00 0.00 0.00 6.53
164 170 0.179000 CCCAGCGTTCCTGAGCTATT 59.821 55.000 0.00 0.00 44.64 1.73
193 199 1.339055 TGCTTCGCCTGCTTTATGTCT 60.339 47.619 0.00 0.00 0.00 3.41
194 200 1.740025 GCTTCGCCTGCTTTATGTCTT 59.260 47.619 0.00 0.00 0.00 3.01
197 203 3.052455 TCGCCTGCTTTATGTCTTGAA 57.948 42.857 0.00 0.00 0.00 2.69
251 257 4.681978 GGAACAGCAGGTCGGCGT 62.682 66.667 6.85 0.00 39.27 5.68
277 283 1.305201 TCCTGCGCGGGATTTAATTC 58.695 50.000 34.14 0.00 0.00 2.17
341 348 1.202604 ACGAGTCCAAATCGGTTGTGT 60.203 47.619 1.82 0.00 44.36 3.72
463 473 4.720902 TGCCACATCAGCACCCGG 62.721 66.667 0.00 0.00 34.69 5.73
464 474 4.722700 GCCACATCAGCACCCGGT 62.723 66.667 0.00 0.00 0.00 5.28
469 479 2.687200 ATCAGCACCCGGTAGGCA 60.687 61.111 0.00 0.00 40.58 4.75
511 522 8.604640 TTCCTGTCAATACGTATAAACAACAA 57.395 30.769 18.26 12.90 0.00 2.83
544 555 2.727123 TGCAACCTCTCACTCCAAAA 57.273 45.000 0.00 0.00 0.00 2.44
607 619 1.543802 GTTCCAATGCCCGAATTGTGA 59.456 47.619 0.00 0.00 36.06 3.58
629 641 9.856488 TGTGATACTTCTGTGTAATTTACTCTC 57.144 33.333 7.99 0.57 0.00 3.20
630 642 9.856488 GTGATACTTCTGTGTAATTTACTCTCA 57.144 33.333 7.99 4.48 0.00 3.27
631 643 9.856488 TGATACTTCTGTGTAATTTACTCTCAC 57.144 33.333 7.99 0.00 0.00 3.51
632 644 9.856488 GATACTTCTGTGTAATTTACTCTCACA 57.144 33.333 7.99 3.43 37.44 3.58
633 645 7.948278 ACTTCTGTGTAATTTACTCTCACAC 57.052 36.000 7.99 0.00 39.89 3.82
634 646 7.497595 ACTTCTGTGTAATTTACTCTCACACA 58.502 34.615 7.99 7.63 45.20 3.72
635 647 7.438459 ACTTCTGTGTAATTTACTCTCACACAC 59.562 37.037 7.99 0.71 43.22 3.82
636 648 7.050970 TCTGTGTAATTTACTCTCACACACT 57.949 36.000 7.99 0.00 43.22 3.55
637 649 6.923508 TCTGTGTAATTTACTCTCACACACTG 59.076 38.462 7.99 4.17 43.22 3.66
638 650 5.989168 TGTGTAATTTACTCTCACACACTGG 59.011 40.000 7.99 0.00 43.22 4.00
639 651 6.183360 TGTGTAATTTACTCTCACACACTGGA 60.183 38.462 7.99 0.00 43.22 3.86
640 652 6.366332 GTGTAATTTACTCTCACACACTGGAG 59.634 42.308 7.99 0.00 39.39 3.86
641 653 4.543590 ATTTACTCTCACACACTGGAGG 57.456 45.455 0.00 0.00 0.00 4.30
642 654 2.677542 TACTCTCACACACTGGAGGT 57.322 50.000 0.00 0.00 0.00 3.85
650 662 2.348998 CACTGGAGGTGGCTGACC 59.651 66.667 0.00 0.00 46.58 4.02
708 720 4.796495 GCCCGACTCGGCCCAAAT 62.796 66.667 12.37 0.00 46.86 2.32
709 721 2.513897 CCCGACTCGGCCCAAATC 60.514 66.667 12.37 0.00 46.86 2.17
710 722 2.513897 CCGACTCGGCCCAAATCC 60.514 66.667 4.10 0.00 41.17 3.01
711 723 2.513897 CGACTCGGCCCAAATCCC 60.514 66.667 0.00 0.00 0.00 3.85
712 724 2.674754 GACTCGGCCCAAATCCCA 59.325 61.111 0.00 0.00 0.00 4.37
713 725 1.001393 GACTCGGCCCAAATCCCAA 60.001 57.895 0.00 0.00 0.00 4.12
714 726 0.610785 GACTCGGCCCAAATCCCAAA 60.611 55.000 0.00 0.00 0.00 3.28
715 727 0.041090 ACTCGGCCCAAATCCCAAAT 59.959 50.000 0.00 0.00 0.00 2.32
716 728 1.194218 CTCGGCCCAAATCCCAAATT 58.806 50.000 0.00 0.00 0.00 1.82
717 729 2.291930 ACTCGGCCCAAATCCCAAATTA 60.292 45.455 0.00 0.00 0.00 1.40
718 730 2.100749 CTCGGCCCAAATCCCAAATTAC 59.899 50.000 0.00 0.00 0.00 1.89
719 731 1.138069 CGGCCCAAATCCCAAATTACC 59.862 52.381 0.00 0.00 0.00 2.85
720 732 2.192263 GGCCCAAATCCCAAATTACCA 58.808 47.619 0.00 0.00 0.00 3.25
721 733 2.573915 GGCCCAAATCCCAAATTACCAA 59.426 45.455 0.00 0.00 0.00 3.67
722 734 3.201930 GGCCCAAATCCCAAATTACCAAT 59.798 43.478 0.00 0.00 0.00 3.16
723 735 4.450976 GCCCAAATCCCAAATTACCAATC 58.549 43.478 0.00 0.00 0.00 2.67
724 736 4.164030 GCCCAAATCCCAAATTACCAATCT 59.836 41.667 0.00 0.00 0.00 2.40
725 737 5.339118 GCCCAAATCCCAAATTACCAATCTT 60.339 40.000 0.00 0.00 0.00 2.40
726 738 6.114767 CCCAAATCCCAAATTACCAATCTTG 58.885 40.000 0.00 0.00 0.00 3.02
740 752 5.567138 CCAATCTTGGTACCAATCTGTTC 57.433 43.478 27.24 0.00 43.43 3.18
741 753 4.399303 CCAATCTTGGTACCAATCTGTTCC 59.601 45.833 27.24 0.00 43.43 3.62
742 754 4.927267 ATCTTGGTACCAATCTGTTCCA 57.073 40.909 27.24 2.19 34.33 3.53
743 755 4.715534 TCTTGGTACCAATCTGTTCCAA 57.284 40.909 27.24 1.40 41.57 3.53
744 756 5.255397 TCTTGGTACCAATCTGTTCCAAT 57.745 39.130 27.24 0.00 42.46 3.16
745 757 6.381498 TCTTGGTACCAATCTGTTCCAATA 57.619 37.500 27.24 0.63 42.46 1.90
746 758 6.177610 TCTTGGTACCAATCTGTTCCAATAC 58.822 40.000 27.24 0.00 42.46 1.89
747 759 4.850680 TGGTACCAATCTGTTCCAATACC 58.149 43.478 13.60 0.00 33.37 2.73
748 760 4.204799 GGTACCAATCTGTTCCAATACCC 58.795 47.826 7.15 0.00 0.00 3.69
749 761 2.999331 ACCAATCTGTTCCAATACCCG 58.001 47.619 0.00 0.00 0.00 5.28
750 762 2.574369 ACCAATCTGTTCCAATACCCGA 59.426 45.455 0.00 0.00 0.00 5.14
751 763 3.009695 ACCAATCTGTTCCAATACCCGAA 59.990 43.478 0.00 0.00 0.00 4.30
752 764 4.207165 CCAATCTGTTCCAATACCCGAAT 58.793 43.478 0.00 0.00 0.00 3.34
753 765 4.644685 CCAATCTGTTCCAATACCCGAATT 59.355 41.667 0.00 0.00 0.00 2.17
754 766 5.450412 CCAATCTGTTCCAATACCCGAATTG 60.450 44.000 0.00 0.00 36.74 2.32
755 767 4.295141 TCTGTTCCAATACCCGAATTGT 57.705 40.909 0.00 0.00 35.48 2.71
756 768 4.006989 TCTGTTCCAATACCCGAATTGTG 58.993 43.478 0.00 0.00 35.48 3.33
757 769 4.006989 CTGTTCCAATACCCGAATTGTGA 58.993 43.478 0.00 0.00 35.48 3.58
758 770 4.594970 TGTTCCAATACCCGAATTGTGAT 58.405 39.130 0.00 0.00 35.48 3.06
759 771 5.746284 TGTTCCAATACCCGAATTGTGATA 58.254 37.500 0.00 0.00 35.48 2.15
760 772 5.587043 TGTTCCAATACCCGAATTGTGATAC 59.413 40.000 0.00 0.00 35.48 2.24
761 773 5.623956 TCCAATACCCGAATTGTGATACT 57.376 39.130 0.00 0.00 35.48 2.12
762 774 5.996644 TCCAATACCCGAATTGTGATACTT 58.003 37.500 0.00 0.00 35.48 2.24
763 775 6.053005 TCCAATACCCGAATTGTGATACTTC 58.947 40.000 0.00 0.00 35.48 3.01
764 776 6.055588 CCAATACCCGAATTGTGATACTTCT 58.944 40.000 0.00 0.00 35.48 2.85
765 777 6.017934 CCAATACCCGAATTGTGATACTTCTG 60.018 42.308 0.00 0.00 35.48 3.02
766 778 4.553330 ACCCGAATTGTGATACTTCTGT 57.447 40.909 0.00 0.00 0.00 3.41
767 779 4.253685 ACCCGAATTGTGATACTTCTGTG 58.746 43.478 0.00 0.00 0.00 3.66
768 780 4.253685 CCCGAATTGTGATACTTCTGTGT 58.746 43.478 0.00 0.00 0.00 3.72
769 781 5.046878 ACCCGAATTGTGATACTTCTGTGTA 60.047 40.000 0.00 0.00 0.00 2.90
770 782 5.872617 CCCGAATTGTGATACTTCTGTGTAA 59.127 40.000 0.00 0.00 0.00 2.41
771 783 6.538742 CCCGAATTGTGATACTTCTGTGTAAT 59.461 38.462 0.00 0.00 0.00 1.89
772 784 7.065803 CCCGAATTGTGATACTTCTGTGTAATT 59.934 37.037 0.00 0.00 0.00 1.40
773 785 8.450964 CCGAATTGTGATACTTCTGTGTAATTT 58.549 33.333 0.00 0.00 0.00 1.82
779 791 9.856488 TGTGATACTTCTGTGTAATTTACTCTC 57.144 33.333 7.99 0.57 0.00 3.20
780 792 9.856488 GTGATACTTCTGTGTAATTTACTCTCA 57.144 33.333 7.99 4.48 0.00 3.27
781 793 9.856488 TGATACTTCTGTGTAATTTACTCTCAC 57.144 33.333 7.99 0.00 0.00 3.51
782 794 9.856488 GATACTTCTGTGTAATTTACTCTCACA 57.144 33.333 7.99 3.43 37.44 3.58
783 795 7.948278 ACTTCTGTGTAATTTACTCTCACAC 57.052 36.000 7.99 0.00 39.89 3.82
784 796 7.497595 ACTTCTGTGTAATTTACTCTCACACA 58.502 34.615 7.99 7.63 45.20 3.72
785 797 7.438459 ACTTCTGTGTAATTTACTCTCACACAC 59.562 37.037 7.99 0.71 43.22 3.82
786 798 7.050970 TCTGTGTAATTTACTCTCACACACT 57.949 36.000 7.99 0.00 43.22 3.55
787 799 6.923508 TCTGTGTAATTTACTCTCACACACTG 59.076 38.462 7.99 4.17 43.22 3.66
788 800 5.989168 TGTGTAATTTACTCTCACACACTGG 59.011 40.000 7.99 0.00 43.22 4.00
789 801 6.183360 TGTGTAATTTACTCTCACACACTGGA 60.183 38.462 7.99 0.00 43.22 3.86
790 802 6.366332 GTGTAATTTACTCTCACACACTGGAG 59.634 42.308 7.99 0.00 39.39 3.86
953 977 0.616111 ACTCGGGGCTTGTGAGAGAT 60.616 55.000 0.00 0.00 33.93 2.75
954 978 1.342076 ACTCGGGGCTTGTGAGAGATA 60.342 52.381 0.00 0.00 33.93 1.98
955 979 1.339610 CTCGGGGCTTGTGAGAGATAG 59.660 57.143 0.00 0.00 31.31 2.08
968 992 9.921637 CTTGTGAGAGATAGTAGAAAGAAAAGT 57.078 33.333 0.00 0.00 0.00 2.66
1008 1032 0.583438 CGGCACTGCACATGCTATAC 59.417 55.000 15.85 1.37 42.93 1.47
1009 1033 1.667236 GGCACTGCACATGCTATACA 58.333 50.000 15.85 0.00 42.93 2.29
1019 1043 4.366586 CACATGCTATACACAGACAGAGG 58.633 47.826 0.00 0.00 0.00 3.69
1020 1044 4.026744 ACATGCTATACACAGACAGAGGT 58.973 43.478 0.00 0.00 0.00 3.85
1021 1045 4.098654 ACATGCTATACACAGACAGAGGTC 59.901 45.833 0.00 0.00 44.66 3.85
1022 1046 3.024547 TGCTATACACAGACAGAGGTCC 58.975 50.000 0.00 0.00 45.48 4.46
1024 1048 3.447586 GCTATACACAGACAGAGGTCCAA 59.552 47.826 0.00 0.00 45.48 3.53
1047 1071 0.948623 CAAGGTCGTCAATGTCGGCA 60.949 55.000 6.82 0.00 34.45 5.69
1050 1074 2.809174 TCGTCAATGTCGGCAGCG 60.809 61.111 0.00 0.00 0.00 5.18
1337 1389 1.401670 CGACTTCCTCTGTGAGTTCCG 60.402 57.143 0.00 0.00 0.00 4.30
1340 1392 2.434702 ACTTCCTCTGTGAGTTCCGTTT 59.565 45.455 0.00 0.00 0.00 3.60
1364 1416 2.282887 CCCCCGACCCAAAACCAG 60.283 66.667 0.00 0.00 0.00 4.00
1365 1417 2.836187 CCCCCGACCCAAAACCAGA 61.836 63.158 0.00 0.00 0.00 3.86
1366 1418 1.303317 CCCCGACCCAAAACCAGAG 60.303 63.158 0.00 0.00 0.00 3.35
1402 1928 4.569943 AGATTCTGCTTTTTCTGTCGCTA 58.430 39.130 0.00 0.00 0.00 4.26
1554 2095 1.824852 ACACTGACACTGACACTGACA 59.175 47.619 0.00 0.00 0.00 3.58
1570 2115 1.344438 TGACAGATTGGTCGTCAGCTT 59.656 47.619 0.00 0.00 40.72 3.74
1575 2124 4.081420 ACAGATTGGTCGTCAGCTTAATCT 60.081 41.667 0.00 0.00 35.82 2.40
1580 2129 4.433615 TGGTCGTCAGCTTAATCTCATTC 58.566 43.478 0.00 0.00 0.00 2.67
1582 2131 4.352039 GTCGTCAGCTTAATCTCATTCGA 58.648 43.478 0.00 0.00 0.00 3.71
1593 2142 1.005340 CTCATTCGAGTGAAGCCAGC 58.995 55.000 12.02 0.00 37.57 4.85
1594 2143 0.391661 TCATTCGAGTGAAGCCAGCC 60.392 55.000 8.32 0.00 37.57 4.85
1595 2144 0.674581 CATTCGAGTGAAGCCAGCCA 60.675 55.000 0.86 0.00 37.57 4.75
1596 2145 0.392193 ATTCGAGTGAAGCCAGCCAG 60.392 55.000 0.00 0.00 37.57 4.85
1597 2146 1.471829 TTCGAGTGAAGCCAGCCAGA 61.472 55.000 0.00 0.00 0.00 3.86
1599 2148 1.744741 GAGTGAAGCCAGCCAGAGC 60.745 63.158 0.00 0.00 40.32 4.09
1600 2149 2.749441 GTGAAGCCAGCCAGAGCC 60.749 66.667 0.00 0.00 41.25 4.70
1603 2152 3.255397 AAGCCAGCCAGAGCCTGT 61.255 61.111 2.18 0.00 41.25 4.00
1604 2153 3.564345 AAGCCAGCCAGAGCCTGTG 62.564 63.158 2.18 0.00 41.25 3.66
1610 2159 2.187685 CCAGAGCCTGTGCGCATA 59.812 61.111 15.91 10.94 44.33 3.14
1611 2160 2.176273 CCAGAGCCTGTGCGCATAC 61.176 63.158 15.91 1.03 44.33 2.39
1612 2161 2.176273 CAGAGCCTGTGCGCATACC 61.176 63.158 15.91 0.09 44.33 2.73
1613 2162 3.264897 GAGCCTGTGCGCATACCG 61.265 66.667 15.91 2.29 44.33 4.02
1632 2198 3.678548 ACCGCGAAAACTTAACTCAGATC 59.321 43.478 8.23 0.00 0.00 2.75
1638 2204 6.040878 CGAAAACTTAACTCAGATCCCGTAT 58.959 40.000 0.00 0.00 0.00 3.06
1639 2205 7.198390 CGAAAACTTAACTCAGATCCCGTATA 58.802 38.462 0.00 0.00 0.00 1.47
1640 2206 7.167136 CGAAAACTTAACTCAGATCCCGTATAC 59.833 40.741 0.00 0.00 0.00 1.47
1641 2207 7.657023 AAACTTAACTCAGATCCCGTATACT 57.343 36.000 0.56 0.00 0.00 2.12
1642 2208 6.880942 ACTTAACTCAGATCCCGTATACTC 57.119 41.667 0.56 0.00 0.00 2.59
1655 2221 4.485024 CGTATACTCTAGAACGGTGCAT 57.515 45.455 6.77 0.00 0.00 3.96
1679 2245 5.041951 TGGTCGTATTTTCAGTGAAATGC 57.958 39.130 18.69 11.23 31.34 3.56
1690 2256 3.760151 TCAGTGAAATGCCCTTCATTCTG 59.240 43.478 0.00 5.40 44.23 3.02
1691 2257 3.760151 CAGTGAAATGCCCTTCATTCTGA 59.240 43.478 8.61 0.00 44.23 3.27
1727 2295 9.869844 CTAGCAATGTACAGTAGCAAAATATTC 57.130 33.333 16.23 0.00 0.00 1.75
1739 2307 9.561069 AGTAGCAAAATATTCATTCCGTCTTAT 57.439 29.630 0.00 0.00 0.00 1.73
1780 2350 2.328099 GGCACGGCTCAACCTGAAG 61.328 63.158 0.00 0.00 35.61 3.02
1818 2401 6.183360 CGGAGTAGTACTAGCTAACCAACATT 60.183 42.308 1.87 0.00 0.00 2.71
1819 2402 7.554211 GGAGTAGTACTAGCTAACCAACATTT 58.446 38.462 1.87 0.00 0.00 2.32
1820 2403 8.039538 GGAGTAGTACTAGCTAACCAACATTTT 58.960 37.037 1.87 0.00 0.00 1.82
1821 2404 9.433153 GAGTAGTACTAGCTAACCAACATTTTT 57.567 33.333 1.87 0.00 0.00 1.94
1865 2477 1.281867 CTGCATTAGTTGGTCCCTCCA 59.718 52.381 0.00 0.00 45.60 3.86
1892 2510 9.258629 TCCATATCTTCATTCAATTTCAAACCT 57.741 29.630 0.00 0.00 0.00 3.50
1908 2527 2.721425 ACCTTGTCCTTTTGAACCGA 57.279 45.000 0.00 0.00 0.00 4.69
1937 2560 4.095211 TCCATGATCAATTCAAAGCCCAA 58.905 39.130 0.00 0.00 38.03 4.12
1944 2567 3.703556 TCAATTCAAAGCCCAACTGTTCA 59.296 39.130 0.00 0.00 0.00 3.18
1945 2568 4.161189 TCAATTCAAAGCCCAACTGTTCAA 59.839 37.500 0.00 0.00 0.00 2.69
1946 2569 4.751767 ATTCAAAGCCCAACTGTTCAAA 57.248 36.364 0.00 0.00 0.00 2.69
2039 2713 1.294659 CCTCAGCGTCCAAACTCTGC 61.295 60.000 0.00 0.00 37.98 4.26
2208 2884 2.477754 CCGACAATCATGTGATGGATCG 59.522 50.000 4.43 9.64 40.74 3.69
2255 2931 1.386533 GCTGGGGATGTGAATCTGTG 58.613 55.000 0.00 0.00 0.00 3.66
2266 2942 1.168714 GAATCTGTGACCAAGGGCAC 58.831 55.000 18.24 18.24 32.96 5.01
2268 2944 4.069869 CTGTGACCAAGGGCACAG 57.930 61.111 33.75 33.75 44.41 3.66
2303 2980 7.639113 CCTAAAATAGGGAACTTTGCACATA 57.361 36.000 0.00 0.00 42.42 2.29
2335 3017 3.008330 CCTGAAGCCAACTGATCTTCTG 58.992 50.000 0.00 0.00 37.63 3.02
2398 3084 9.220767 CTAATTGCCTTTATTCTGGACTATACC 57.779 37.037 0.00 0.00 0.00 2.73
2411 3097 4.960469 TGGACTATACCACTAAGTTGAGGG 59.040 45.833 0.00 0.00 34.77 4.30
2421 3107 2.262423 AAGTTGAGGGACACAGAAGC 57.738 50.000 0.00 0.00 0.00 3.86
2509 3220 0.249398 GTGTCCGTGGTATTGCCTCT 59.751 55.000 0.00 0.00 38.35 3.69
2591 3317 0.248377 CGGTAGGTAGTCTTTCGCGG 60.248 60.000 6.13 0.00 0.00 6.46
2656 3386 1.756375 GAGCTGCGCTATCACCAACG 61.756 60.000 9.73 0.00 39.88 4.10
2660 3397 3.261951 CGCTATCACCAACGCGGG 61.262 66.667 12.47 5.24 41.72 6.13
2661 3398 2.125269 GCTATCACCAACGCGGGT 60.125 61.111 12.47 6.05 43.56 5.28
2736 3473 2.284331 TTGGTCAGAGGGCGCCTA 60.284 61.111 28.56 4.00 31.76 3.93
2737 3474 2.579684 CTTGGTCAGAGGGCGCCTAC 62.580 65.000 28.56 20.03 31.76 3.18
2738 3475 3.075005 GGTCAGAGGGCGCCTACA 61.075 66.667 28.56 2.92 31.76 2.74
2739 3476 2.656069 GGTCAGAGGGCGCCTACAA 61.656 63.158 28.56 10.01 31.76 2.41
2740 3477 1.522569 GTCAGAGGGCGCCTACAAT 59.477 57.895 28.56 7.41 31.76 2.71
2741 3478 0.107654 GTCAGAGGGCGCCTACAATT 60.108 55.000 28.56 5.06 31.76 2.32
2742 3479 1.138266 GTCAGAGGGCGCCTACAATTA 59.862 52.381 28.56 3.20 31.76 1.40
2743 3480 2.047061 TCAGAGGGCGCCTACAATTAT 58.953 47.619 28.56 1.89 31.76 1.28
2744 3481 3.006537 GTCAGAGGGCGCCTACAATTATA 59.993 47.826 28.56 0.06 31.76 0.98
2745 3482 3.838317 TCAGAGGGCGCCTACAATTATAT 59.162 43.478 28.56 0.00 31.76 0.86
2746 3483 4.081642 TCAGAGGGCGCCTACAATTATATC 60.082 45.833 28.56 4.37 31.76 1.63
2747 3484 4.081420 CAGAGGGCGCCTACAATTATATCT 60.081 45.833 28.56 10.02 31.76 1.98
2748 3485 4.081420 AGAGGGCGCCTACAATTATATCTG 60.081 45.833 28.56 0.00 31.76 2.90
2749 3486 3.055094 AGGGCGCCTACAATTATATCTGG 60.055 47.826 28.56 0.00 28.47 3.86
2750 3487 2.678336 GGCGCCTACAATTATATCTGGC 59.322 50.000 22.15 0.00 35.94 4.85
2751 3488 2.678336 GCGCCTACAATTATATCTGGCC 59.322 50.000 0.00 0.00 35.89 5.36
2752 3489 3.868369 GCGCCTACAATTATATCTGGCCA 60.868 47.826 4.71 4.71 35.89 5.36
2753 3490 4.517285 CGCCTACAATTATATCTGGCCAT 58.483 43.478 5.51 0.00 35.89 4.40
2754 3491 4.333649 CGCCTACAATTATATCTGGCCATG 59.666 45.833 5.51 0.43 35.89 3.66
2755 3492 4.641989 GCCTACAATTATATCTGGCCATGG 59.358 45.833 5.51 7.63 33.45 3.66
2756 3493 5.195940 CCTACAATTATATCTGGCCATGGG 58.804 45.833 15.13 0.00 0.00 4.00
2787 3524 3.723922 GGCTTGGGTCGGGCCTAA 61.724 66.667 0.84 0.00 42.31 2.69
2788 3525 2.353573 GCTTGGGTCGGGCCTAAA 59.646 61.111 0.84 0.00 37.27 1.85
2789 3526 1.303806 GCTTGGGTCGGGCCTAAAA 60.304 57.895 0.84 0.00 37.27 1.52
2790 3527 1.313091 GCTTGGGTCGGGCCTAAAAG 61.313 60.000 0.84 2.28 37.27 2.27
2791 3528 0.326927 CTTGGGTCGGGCCTAAAAGA 59.673 55.000 0.84 0.00 37.27 2.52
2792 3529 0.326927 TTGGGTCGGGCCTAAAAGAG 59.673 55.000 0.84 0.00 34.60 2.85
2793 3530 1.451567 GGGTCGGGCCTAAAAGAGC 60.452 63.158 0.84 0.00 37.43 4.09
2799 3536 2.873797 GGCCTAAAAGAGCCCACAG 58.126 57.895 0.00 0.00 43.76 3.66
2800 3537 1.315981 GGCCTAAAAGAGCCCACAGC 61.316 60.000 0.00 0.00 43.76 4.40
2810 3547 2.719376 GCCCACAGCAGAAAACTGA 58.281 52.632 0.00 0.00 42.97 3.41
2811 3548 0.595095 GCCCACAGCAGAAAACTGAG 59.405 55.000 0.00 0.00 42.97 3.35
2812 3549 1.242076 CCCACAGCAGAAAACTGAGG 58.758 55.000 0.00 0.00 43.24 3.86
2813 3550 0.595095 CCACAGCAGAAAACTGAGGC 59.405 55.000 0.00 0.00 38.72 4.70
2814 3551 0.595095 CACAGCAGAAAACTGAGGCC 59.405 55.000 0.00 0.00 38.55 5.19
2815 3552 0.538287 ACAGCAGAAAACTGAGGCCC 60.538 55.000 0.00 0.00 38.55 5.80
2816 3553 0.538057 CAGCAGAAAACTGAGGCCCA 60.538 55.000 0.00 0.00 37.32 5.36
2836 3573 2.290393 CCCTCCCAGGCCCTATCA 59.710 66.667 0.00 0.00 32.73 2.15
2837 3574 2.150051 CCCTCCCAGGCCCTATCAC 61.150 68.421 0.00 0.00 32.73 3.06
2838 3575 1.074167 CCTCCCAGGCCCTATCACT 60.074 63.158 0.00 0.00 0.00 3.41
2839 3576 1.414061 CCTCCCAGGCCCTATCACTG 61.414 65.000 0.00 0.00 0.00 3.66
2841 3578 3.244616 CCAGGCCCTATCACTGGG 58.755 66.667 0.00 0.00 46.24 4.45
2847 3584 3.560226 CCCTATCACTGGGCCTACT 57.440 57.895 4.53 0.00 37.99 2.57
2848 3585 1.807814 CCCTATCACTGGGCCTACTT 58.192 55.000 4.53 0.00 37.99 2.24
2849 3586 2.127708 CCCTATCACTGGGCCTACTTT 58.872 52.381 4.53 0.00 37.99 2.66
2850 3587 2.509964 CCCTATCACTGGGCCTACTTTT 59.490 50.000 4.53 0.00 37.99 2.27
2851 3588 3.433740 CCCTATCACTGGGCCTACTTTTC 60.434 52.174 4.53 0.00 37.99 2.29
2852 3589 3.199946 CCTATCACTGGGCCTACTTTTCA 59.800 47.826 4.53 0.00 0.00 2.69
2853 3590 3.806949 ATCACTGGGCCTACTTTTCAA 57.193 42.857 4.53 0.00 0.00 2.69
2854 3591 3.140325 TCACTGGGCCTACTTTTCAAG 57.860 47.619 4.53 0.00 0.00 3.02
2855 3592 1.541588 CACTGGGCCTACTTTTCAAGC 59.458 52.381 4.53 0.00 0.00 4.01
2856 3593 1.177401 CTGGGCCTACTTTTCAAGCC 58.823 55.000 4.53 0.00 43.09 4.35
2858 3595 3.356814 GGCCTACTTTTCAAGCCCA 57.643 52.632 0.00 0.00 37.66 5.36
2859 3596 1.627864 GGCCTACTTTTCAAGCCCAA 58.372 50.000 0.00 0.00 37.66 4.12
2860 3597 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
2861 3598 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
2862 3599 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
2863 3600 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
2864 3601 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
2865 3602 1.152652 TTTTCAAGCCCAAGCCCGA 60.153 52.632 0.00 0.00 41.25 5.14
2866 3603 1.460273 TTTTCAAGCCCAAGCCCGAC 61.460 55.000 0.00 0.00 41.25 4.79
2867 3604 3.860930 TTCAAGCCCAAGCCCGACC 62.861 63.158 0.00 0.00 41.25 4.79
2872 3609 3.411517 CCCAAGCCCGACCCATCT 61.412 66.667 0.00 0.00 0.00 2.90
2873 3610 2.124570 CCAAGCCCGACCCATCTG 60.125 66.667 0.00 0.00 0.00 2.90
2874 3611 2.124570 CAAGCCCGACCCATCTGG 60.125 66.667 0.00 0.00 41.37 3.86
2885 3622 2.532250 CCCATCTGGTAAAAAGCCCT 57.468 50.000 0.00 0.00 0.00 5.19
2886 3623 3.662759 CCCATCTGGTAAAAAGCCCTA 57.337 47.619 0.00 0.00 0.00 3.53
2887 3624 3.976015 CCCATCTGGTAAAAAGCCCTAA 58.024 45.455 0.00 0.00 0.00 2.69
2888 3625 3.954258 CCCATCTGGTAAAAAGCCCTAAG 59.046 47.826 0.00 0.00 0.00 2.18
2889 3626 3.954258 CCATCTGGTAAAAAGCCCTAAGG 59.046 47.826 0.00 0.00 0.00 2.69
2920 3657 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
2921 3658 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
2922 3659 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
2923 3660 0.323087 GCCGGGCCTCTTCCTTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
2924 3661 1.685180 GCCGGGCCTCTTCCTTAAAAT 60.685 52.381 8.12 0.00 0.00 1.82
2925 3662 2.024414 CCGGGCCTCTTCCTTAAAATG 58.976 52.381 0.84 0.00 0.00 2.32
2926 3663 1.405463 CGGGCCTCTTCCTTAAAATGC 59.595 52.381 0.84 0.00 0.00 3.56
2927 3664 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
2928 3665 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
2929 3666 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
2930 3667 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
2931 3668 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
2932 3669 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
2933 3670 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
2934 3671 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
2935 3672 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
2936 3673 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
2937 3674 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
2938 3675 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
2939 3676 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
2940 3677 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
2941 3678 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
2942 3679 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
2943 3680 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
2944 3681 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
2945 3682 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
2946 3683 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
2947 3684 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
2952 3689 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
2953 3690 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
2962 3699 3.470888 CCCGTCCAGGCCCTACTG 61.471 72.222 0.00 0.00 39.21 2.74
2972 3709 3.820425 CCCTACTGGTGGGCTCAA 58.180 61.111 0.00 0.00 37.99 3.02
2973 3710 2.074967 CCCTACTGGTGGGCTCAAA 58.925 57.895 0.00 0.00 37.99 2.69
2974 3711 0.404040 CCCTACTGGTGGGCTCAAAA 59.596 55.000 0.00 0.00 37.99 2.44
2975 3712 1.614317 CCCTACTGGTGGGCTCAAAAG 60.614 57.143 0.00 0.00 37.99 2.27
2976 3713 1.073923 CCTACTGGTGGGCTCAAAAGT 59.926 52.381 7.52 7.52 0.00 2.66
2977 3714 2.427506 CTACTGGTGGGCTCAAAAGTC 58.572 52.381 5.71 0.00 0.00 3.01
2978 3715 0.550914 ACTGGTGGGCTCAAAAGTCA 59.449 50.000 0.00 0.00 0.00 3.41
2979 3716 1.242076 CTGGTGGGCTCAAAAGTCAG 58.758 55.000 0.00 0.00 0.00 3.51
2980 3717 0.178992 TGGTGGGCTCAAAAGTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
2981 3718 1.527433 GGTGGGCTCAAAAGTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
2983 3720 4.830573 GGCTCAAAAGTCAGGCCT 57.169 55.556 0.00 0.00 39.68 5.19
2984 3721 3.957288 GGCTCAAAAGTCAGGCCTA 57.043 52.632 3.98 0.00 39.68 3.93
2985 3722 2.200373 GGCTCAAAAGTCAGGCCTAA 57.800 50.000 3.98 0.00 39.68 2.69
2986 3723 2.087646 GGCTCAAAAGTCAGGCCTAAG 58.912 52.381 3.98 0.00 39.68 2.18
2987 3724 1.470494 GCTCAAAAGTCAGGCCTAAGC 59.530 52.381 3.98 0.00 38.76 3.09
2998 3735 4.586235 CCTAAGCCCGGCCCATGG 62.586 72.222 5.55 4.14 0.00 3.66
3031 3768 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
3032 3769 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
3039 3776 2.058593 CCTGGATTTTAGGGCCAGTC 57.941 55.000 6.18 0.00 46.05 3.51
3040 3777 1.410224 CCTGGATTTTAGGGCCAGTCC 60.410 57.143 6.18 6.02 46.05 3.85
3041 3778 1.566231 CTGGATTTTAGGGCCAGTCCT 59.434 52.381 6.18 0.00 43.25 3.85
3042 3779 1.284785 TGGATTTTAGGGCCAGTCCTG 59.715 52.381 6.18 0.00 37.75 3.86
3068 3805 3.775654 GACAGGGCCGGGTCTGAG 61.776 72.222 19.90 5.49 35.20 3.35
3069 3806 4.316823 ACAGGGCCGGGTCTGAGA 62.317 66.667 20.68 0.00 35.20 3.27
3070 3807 2.765807 CAGGGCCGGGTCTGAGAT 60.766 66.667 2.18 0.00 33.11 2.75
3071 3808 2.765807 AGGGCCGGGTCTGAGATG 60.766 66.667 2.18 0.00 0.00 2.90
3072 3809 3.866582 GGGCCGGGTCTGAGATGG 61.867 72.222 2.18 0.00 0.00 3.51
3073 3810 4.554036 GGCCGGGTCTGAGATGGC 62.554 72.222 2.18 12.99 44.98 4.40
3074 3811 4.554036 GCCGGGTCTGAGATGGCC 62.554 72.222 2.18 0.00 39.83 5.36
3075 3812 3.083349 CCGGGTCTGAGATGGCCA 61.083 66.667 8.56 8.56 0.00 5.36
3076 3813 2.503061 CGGGTCTGAGATGGCCAG 59.497 66.667 13.05 0.00 0.00 4.85
3077 3814 2.914289 GGGTCTGAGATGGCCAGG 59.086 66.667 13.05 0.00 32.73 4.45
3078 3815 1.690633 GGGTCTGAGATGGCCAGGA 60.691 63.158 13.05 1.13 32.73 3.86
3079 3816 1.524482 GGTCTGAGATGGCCAGGAC 59.476 63.158 13.05 13.38 32.73 3.85
3080 3817 0.980231 GGTCTGAGATGGCCAGGACT 60.980 60.000 13.05 10.74 32.73 3.85
3081 3818 1.689575 GGTCTGAGATGGCCAGGACTA 60.690 57.143 13.05 0.00 32.73 2.59
3082 3819 1.410882 GTCTGAGATGGCCAGGACTAC 59.589 57.143 13.05 1.03 32.73 2.73
3083 3820 0.755686 CTGAGATGGCCAGGACTACC 59.244 60.000 13.05 0.70 0.00 3.18
3672 5364 1.321805 TGCTGCTGGTGTGTTTTGCT 61.322 50.000 0.00 0.00 0.00 3.91
3688 5380 6.369890 GTGTTTTGCTCATCTAATCTGACTCA 59.630 38.462 0.00 0.00 0.00 3.41
3710 5402 3.928992 ACGTACATGTTCATGAGAAGCAG 59.071 43.478 17.96 5.96 33.63 4.24
3764 5460 8.314751 CCTTACTAATAGTAGGTCCATGAATGG 58.685 40.741 8.45 2.68 39.46 3.16
3977 5675 4.100653 TCATCAATCAAGGTTTGTTTGCCA 59.899 37.500 7.42 0.00 39.20 4.92
4184 5887 1.798813 GACCAAGTAGTCGCCAAGTTG 59.201 52.381 0.00 0.00 0.00 3.16
4343 6061 0.392461 TTCTGTATGGCAACGGGAGC 60.392 55.000 0.00 0.00 42.51 4.70
4361 6079 1.207329 AGCCGGAACTTCTGGATACAC 59.793 52.381 19.49 2.45 45.95 2.90
4379 6097 2.361737 GGAACAGGGGCTCTTGGC 60.362 66.667 0.00 0.00 40.90 4.52
4460 6178 1.089920 GCCTCAGCACATACAACAGG 58.910 55.000 0.00 0.00 39.53 4.00
4481 6199 4.364409 GCGGTCGCGTTCAACACC 62.364 66.667 5.77 3.83 0.00 4.16
4613 6334 3.005554 CGGTGAGCTGATCAAATGTCTT 58.994 45.455 0.00 0.00 40.43 3.01
4676 6400 3.319122 GCATTTCTCCAGGTTTTGACAGT 59.681 43.478 0.00 0.00 0.00 3.55
4851 6575 1.266867 TGCAGCCATACTCAGCTCCA 61.267 55.000 0.00 0.00 37.18 3.86
4909 6633 3.070878 TGCAAAGCCCGATAGATCATACA 59.929 43.478 0.00 0.00 39.76 2.29
4915 6639 7.423844 AAGCCCGATAGATCATACATCATAA 57.576 36.000 0.00 0.00 39.76 1.90
5042 6766 1.740025 GGAGCTGGCTGTGTATGTTTC 59.260 52.381 0.00 0.00 0.00 2.78
5531 7255 3.306703 GCGCTCAAAAATGAGAGAGAGAG 59.693 47.826 12.75 0.00 37.84 3.20
5532 7256 4.742417 CGCTCAAAAATGAGAGAGAGAGA 58.258 43.478 9.89 0.00 37.84 3.10
5572 7296 1.968540 GTGGGAGGTCAGTGCTTGC 60.969 63.158 0.00 0.00 0.00 4.01
5592 7316 2.742372 CTTTGCGGGAGGTCGGTG 60.742 66.667 0.00 0.00 0.00 4.94
5630 7354 0.893727 GTCGGTGATTGGGGCTTTGT 60.894 55.000 0.00 0.00 0.00 2.83
5642 7366 1.966451 GCTTTGTGGGAGGTCGGTG 60.966 63.158 0.00 0.00 0.00 4.94
5690 7414 0.459237 CAGGACACTGGAGATGACGC 60.459 60.000 0.00 0.00 41.13 5.19
5823 7547 0.249911 GATAACGGCTGCCCTCGAAT 60.250 55.000 14.12 0.00 0.00 3.34
5835 7559 0.861837 CCTCGAATGATTACCAGCGC 59.138 55.000 0.00 0.00 0.00 5.92
5836 7560 1.570813 CTCGAATGATTACCAGCGCA 58.429 50.000 11.47 0.00 0.00 6.09
5860 7584 4.618920 ACGTCTAGAACCACCTGAAATT 57.381 40.909 0.00 0.00 0.00 1.82
5862 7586 5.374071 ACGTCTAGAACCACCTGAAATTTT 58.626 37.500 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.828549 CAGGGGCACGTAATGGGC 60.829 66.667 0.00 0.00 0.00 5.36
8 9 1.748879 CACAGGGGCACGTAATGGG 60.749 63.158 0.00 0.00 0.00 4.00
9 10 0.744414 CTCACAGGGGCACGTAATGG 60.744 60.000 0.00 0.00 0.00 3.16
10 11 1.369091 GCTCACAGGGGCACGTAATG 61.369 60.000 0.00 0.00 0.00 1.90
11 12 1.078426 GCTCACAGGGGCACGTAAT 60.078 57.895 0.00 0.00 0.00 1.89
12 13 2.345991 GCTCACAGGGGCACGTAA 59.654 61.111 0.00 0.00 0.00 3.18
13 14 4.063967 CGCTCACAGGGGCACGTA 62.064 66.667 0.00 0.00 0.00 3.57
19 20 3.850098 AAACTGGCGCTCACAGGGG 62.850 63.158 15.21 0.09 40.23 4.79
20 21 2.281761 AAACTGGCGCTCACAGGG 60.282 61.111 15.21 0.41 40.23 4.45
21 22 1.294659 GAGAAACTGGCGCTCACAGG 61.295 60.000 15.21 0.72 40.23 4.00
22 23 0.320247 AGAGAAACTGGCGCTCACAG 60.320 55.000 7.64 9.17 41.64 3.66
23 24 0.966179 TAGAGAAACTGGCGCTCACA 59.034 50.000 7.64 0.00 0.00 3.58
24 25 2.080286 TTAGAGAAACTGGCGCTCAC 57.920 50.000 7.64 0.00 0.00 3.51
25 26 2.735444 CGATTAGAGAAACTGGCGCTCA 60.735 50.000 7.64 2.39 0.00 4.26
26 27 1.855360 CGATTAGAGAAACTGGCGCTC 59.145 52.381 7.64 0.00 0.00 5.03
27 28 1.471676 CCGATTAGAGAAACTGGCGCT 60.472 52.381 7.64 0.00 0.00 5.92
28 29 0.931005 CCGATTAGAGAAACTGGCGC 59.069 55.000 0.00 0.00 0.00 6.53
29 30 0.931005 GCCGATTAGAGAAACTGGCG 59.069 55.000 0.00 0.00 32.73 5.69
30 31 0.931005 CGCCGATTAGAGAAACTGGC 59.069 55.000 0.00 0.00 37.36 4.85
31 32 0.931005 GCGCCGATTAGAGAAACTGG 59.069 55.000 0.00 0.00 0.00 4.00
32 33 1.927895 AGCGCCGATTAGAGAAACTG 58.072 50.000 2.29 0.00 0.00 3.16
33 34 3.119245 TGTTAGCGCCGATTAGAGAAACT 60.119 43.478 2.29 0.00 0.00 2.66
34 35 3.184541 TGTTAGCGCCGATTAGAGAAAC 58.815 45.455 2.29 0.00 0.00 2.78
35 36 3.444916 CTGTTAGCGCCGATTAGAGAAA 58.555 45.455 2.29 0.00 0.00 2.52
36 37 2.798499 GCTGTTAGCGCCGATTAGAGAA 60.798 50.000 2.29 0.00 0.00 2.87
37 38 1.269102 GCTGTTAGCGCCGATTAGAGA 60.269 52.381 2.29 0.00 0.00 3.10
38 39 1.132588 GCTGTTAGCGCCGATTAGAG 58.867 55.000 2.29 0.00 0.00 2.43
39 40 3.267900 GCTGTTAGCGCCGATTAGA 57.732 52.632 2.29 0.00 0.00 2.10
49 50 1.589196 CCTAGTCGGCGCTGTTAGC 60.589 63.158 17.37 5.49 38.02 3.09
50 51 0.029567 CTCCTAGTCGGCGCTGTTAG 59.970 60.000 17.37 17.65 0.00 2.34
193 199 1.741401 CCGCCAGAGCATCGTTCAA 60.741 57.895 0.00 0.00 42.67 2.69
194 200 2.125552 CCGCCAGAGCATCGTTCA 60.126 61.111 0.00 0.00 42.67 3.18
251 257 0.679640 ATCCCGCGCAGGATTTGAAA 60.680 50.000 19.66 0.00 44.61 2.69
277 283 7.425915 TGAACGAACAAATAAAACAAACGAG 57.574 32.000 0.00 0.00 0.00 4.18
463 473 4.796495 CCGGTTGGGCCTGCCTAC 62.796 72.222 4.53 6.76 36.10 3.18
469 479 2.692273 GAAACTGACCGGTTGGGCCT 62.692 60.000 9.42 0.00 46.01 5.19
544 555 7.444792 TGGTAATTTTTACGTGTCAGTACCAAT 59.555 33.333 12.78 0.00 36.44 3.16
607 619 9.640963 GTGTGAGAGTAAATTACACAGAAGTAT 57.359 33.333 5.89 0.00 41.09 2.12
629 641 1.598962 CAGCCACCTCCAGTGTGTG 60.599 63.158 0.00 0.00 45.74 3.82
630 642 1.766059 TCAGCCACCTCCAGTGTGT 60.766 57.895 0.00 0.00 45.74 3.72
631 643 1.302033 GTCAGCCACCTCCAGTGTG 60.302 63.158 0.00 0.00 45.74 3.82
632 644 2.520536 GGTCAGCCACCTCCAGTGT 61.521 63.158 0.00 0.00 45.74 3.55
633 645 2.348998 GGTCAGCCACCTCCAGTG 59.651 66.667 0.00 0.00 46.83 3.66
634 646 3.314331 CGGTCAGCCACCTCCAGT 61.314 66.667 1.12 0.00 44.21 4.00
635 647 4.087892 CCGGTCAGCCACCTCCAG 62.088 72.222 0.00 0.00 44.21 3.86
694 706 2.513897 GGGATTTGGGCCGAGTCG 60.514 66.667 5.29 5.29 0.00 4.18
695 707 0.610785 TTTGGGATTTGGGCCGAGTC 60.611 55.000 7.74 7.74 0.00 3.36
696 708 0.041090 ATTTGGGATTTGGGCCGAGT 59.959 50.000 0.00 0.00 0.00 4.18
697 709 1.194218 AATTTGGGATTTGGGCCGAG 58.806 50.000 0.00 0.00 0.00 4.63
698 710 2.104170 GTAATTTGGGATTTGGGCCGA 58.896 47.619 0.00 0.00 0.00 5.54
699 711 1.138069 GGTAATTTGGGATTTGGGCCG 59.862 52.381 0.00 0.00 0.00 6.13
700 712 2.192263 TGGTAATTTGGGATTTGGGCC 58.808 47.619 0.00 0.00 0.00 5.80
701 713 3.990959 TTGGTAATTTGGGATTTGGGC 57.009 42.857 0.00 0.00 0.00 5.36
702 714 5.955961 AGATTGGTAATTTGGGATTTGGG 57.044 39.130 0.00 0.00 0.00 4.12
703 715 6.114767 CCAAGATTGGTAATTTGGGATTTGG 58.885 40.000 3.30 0.00 43.43 3.28
719 731 5.009631 TGGAACAGATTGGTACCAAGATTG 58.990 41.667 30.00 26.29 39.47 2.67
720 732 5.255397 TGGAACAGATTGGTACCAAGATT 57.745 39.130 30.00 20.48 39.47 2.40
721 733 4.927267 TGGAACAGATTGGTACCAAGAT 57.073 40.909 30.00 19.00 39.47 2.40
722 734 4.715534 TTGGAACAGATTGGTACCAAGA 57.284 40.909 30.00 11.20 42.39 3.02
723 735 5.357032 GGTATTGGAACAGATTGGTACCAAG 59.643 44.000 30.00 19.80 42.39 3.61
724 736 5.258051 GGTATTGGAACAGATTGGTACCAA 58.742 41.667 28.95 28.95 42.39 3.67
725 737 4.324719 GGGTATTGGAACAGATTGGTACCA 60.325 45.833 11.60 11.60 42.39 3.25
726 738 4.204799 GGGTATTGGAACAGATTGGTACC 58.795 47.826 4.43 4.43 42.39 3.34
727 739 3.875134 CGGGTATTGGAACAGATTGGTAC 59.125 47.826 0.00 0.00 42.39 3.34
728 740 3.775866 TCGGGTATTGGAACAGATTGGTA 59.224 43.478 0.00 0.00 42.39 3.25
729 741 2.574369 TCGGGTATTGGAACAGATTGGT 59.426 45.455 0.00 0.00 42.39 3.67
730 742 3.275617 TCGGGTATTGGAACAGATTGG 57.724 47.619 0.00 0.00 42.39 3.16
731 743 5.125417 ACAATTCGGGTATTGGAACAGATTG 59.875 40.000 0.00 0.00 42.39 2.67
732 744 5.125417 CACAATTCGGGTATTGGAACAGATT 59.875 40.000 0.00 0.00 42.39 2.40
733 745 4.640201 CACAATTCGGGTATTGGAACAGAT 59.360 41.667 0.00 0.00 42.39 2.90
734 746 4.006989 CACAATTCGGGTATTGGAACAGA 58.993 43.478 0.00 0.00 42.39 3.41
735 747 4.006989 TCACAATTCGGGTATTGGAACAG 58.993 43.478 0.00 0.00 42.39 3.16
736 748 4.022413 TCACAATTCGGGTATTGGAACA 57.978 40.909 0.00 0.00 39.33 3.18
737 749 5.820947 AGTATCACAATTCGGGTATTGGAAC 59.179 40.000 0.00 0.00 39.33 3.62
738 750 5.996644 AGTATCACAATTCGGGTATTGGAA 58.003 37.500 0.00 0.00 39.33 3.53
739 751 5.623956 AGTATCACAATTCGGGTATTGGA 57.376 39.130 0.00 0.00 39.33 3.53
740 752 6.017934 CAGAAGTATCACAATTCGGGTATTGG 60.018 42.308 0.00 0.00 39.33 3.16
741 753 6.538742 ACAGAAGTATCACAATTCGGGTATTG 59.461 38.462 0.00 0.00 40.53 1.90
742 754 6.538742 CACAGAAGTATCACAATTCGGGTATT 59.461 38.462 0.00 0.00 0.00 1.89
743 755 6.049149 CACAGAAGTATCACAATTCGGGTAT 58.951 40.000 0.00 0.00 0.00 2.73
744 756 5.046878 ACACAGAAGTATCACAATTCGGGTA 60.047 40.000 0.00 0.00 0.00 3.69
745 757 4.253685 CACAGAAGTATCACAATTCGGGT 58.746 43.478 0.00 0.00 0.00 5.28
746 758 4.253685 ACACAGAAGTATCACAATTCGGG 58.746 43.478 0.00 0.00 0.00 5.14
747 759 6.961359 TTACACAGAAGTATCACAATTCGG 57.039 37.500 0.00 0.00 0.00 4.30
753 765 9.856488 GAGAGTAAATTACACAGAAGTATCACA 57.144 33.333 5.89 0.00 0.00 3.58
754 766 9.856488 TGAGAGTAAATTACACAGAAGTATCAC 57.144 33.333 5.89 0.00 0.00 3.06
755 767 9.856488 GTGAGAGTAAATTACACAGAAGTATCA 57.144 33.333 5.89 0.00 0.00 2.15
756 768 9.856488 TGTGAGAGTAAATTACACAGAAGTATC 57.144 33.333 5.89 0.00 36.72 2.24
757 769 9.640963 GTGTGAGAGTAAATTACACAGAAGTAT 57.359 33.333 5.89 0.00 41.09 2.12
758 770 8.635328 TGTGTGAGAGTAAATTACACAGAAGTA 58.365 33.333 5.89 0.00 44.52 2.24
759 771 7.497595 TGTGTGAGAGTAAATTACACAGAAGT 58.502 34.615 5.89 0.00 44.52 3.01
760 772 7.946655 TGTGTGAGAGTAAATTACACAGAAG 57.053 36.000 5.89 0.00 44.52 2.85
764 776 5.989168 CCAGTGTGTGAGAGTAAATTACACA 59.011 40.000 5.89 0.00 46.42 3.72
765 777 6.220930 TCCAGTGTGTGAGAGTAAATTACAC 58.779 40.000 5.89 0.00 41.36 2.90
766 778 6.413783 TCCAGTGTGTGAGAGTAAATTACA 57.586 37.500 5.89 0.00 0.00 2.41
767 779 5.869888 CCTCCAGTGTGTGAGAGTAAATTAC 59.130 44.000 0.00 0.00 0.00 1.89
768 780 5.542635 ACCTCCAGTGTGTGAGAGTAAATTA 59.457 40.000 0.00 0.00 0.00 1.40
769 781 4.348168 ACCTCCAGTGTGTGAGAGTAAATT 59.652 41.667 0.00 0.00 0.00 1.82
770 782 3.904339 ACCTCCAGTGTGTGAGAGTAAAT 59.096 43.478 0.00 0.00 0.00 1.40
771 783 3.069586 CACCTCCAGTGTGTGAGAGTAAA 59.930 47.826 0.00 0.00 41.93 2.01
772 784 2.628178 CACCTCCAGTGTGTGAGAGTAA 59.372 50.000 0.00 0.00 41.93 2.24
773 785 2.239400 CACCTCCAGTGTGTGAGAGTA 58.761 52.381 0.00 0.00 41.93 2.59
774 786 1.043816 CACCTCCAGTGTGTGAGAGT 58.956 55.000 0.00 0.00 41.93 3.24
775 787 0.319728 CCACCTCCAGTGTGTGAGAG 59.680 60.000 6.33 0.00 45.74 3.20
776 788 1.758440 GCCACCTCCAGTGTGTGAGA 61.758 60.000 6.33 0.00 45.74 3.27
777 789 1.302033 GCCACCTCCAGTGTGTGAG 60.302 63.158 6.33 0.00 45.74 3.51
778 790 1.766059 AGCCACCTCCAGTGTGTGA 60.766 57.895 6.33 0.00 45.74 3.58
779 791 1.598962 CAGCCACCTCCAGTGTGTG 60.599 63.158 0.00 0.00 45.74 3.82
780 792 1.766059 TCAGCCACCTCCAGTGTGT 60.766 57.895 0.00 0.00 45.74 3.72
781 793 1.302033 GTCAGCCACCTCCAGTGTG 60.302 63.158 0.00 0.00 45.74 3.82
782 794 2.520536 GGTCAGCCACCTCCAGTGT 61.521 63.158 0.00 0.00 45.74 3.55
783 795 2.348998 GGTCAGCCACCTCCAGTG 59.651 66.667 0.00 0.00 46.83 3.66
784 796 3.314331 CGGTCAGCCACCTCCAGT 61.314 66.667 1.12 0.00 44.21 4.00
785 797 4.087892 CCGGTCAGCCACCTCCAG 62.088 72.222 0.00 0.00 44.21 3.86
857 870 2.591753 CCACGACCATGCTGGGAT 59.408 61.111 7.06 0.00 43.37 3.85
860 873 1.597797 AAATGCCACGACCATGCTGG 61.598 55.000 0.00 1.16 45.02 4.85
898 918 0.732538 TCATGCGCCGTATATGCTCG 60.733 55.000 4.18 0.00 0.00 5.03
944 968 9.078990 TCACTTTTCTTTCTACTATCTCTCACA 57.921 33.333 0.00 0.00 0.00 3.58
946 970 9.521841 TCTCACTTTTCTTTCTACTATCTCTCA 57.478 33.333 0.00 0.00 0.00 3.27
953 977 6.781014 TGTCCCTCTCACTTTTCTTTCTACTA 59.219 38.462 0.00 0.00 0.00 1.82
954 978 5.602978 TGTCCCTCTCACTTTTCTTTCTACT 59.397 40.000 0.00 0.00 0.00 2.57
955 979 5.697178 GTGTCCCTCTCACTTTTCTTTCTAC 59.303 44.000 0.00 0.00 33.59 2.59
968 992 1.606601 CCCTGTCGTGTCCCTCTCA 60.607 63.158 0.00 0.00 0.00 3.27
990 1014 1.331756 GTGTATAGCATGTGCAGTGCC 59.668 52.381 13.72 4.57 43.50 5.01
991 1015 2.009051 TGTGTATAGCATGTGCAGTGC 58.991 47.619 8.58 8.58 45.16 4.40
995 1019 3.195396 TCTGTCTGTGTATAGCATGTGCA 59.805 43.478 7.83 0.00 45.16 4.57
1008 1032 1.001406 GGACTTGGACCTCTGTCTGTG 59.999 57.143 10.35 0.00 41.47 3.66
1009 1033 1.343069 GGACTTGGACCTCTGTCTGT 58.657 55.000 10.35 0.00 41.47 3.41
1019 1043 0.391597 TGACGACCTTGGACTTGGAC 59.608 55.000 0.00 0.00 0.00 4.02
1020 1044 1.124780 TTGACGACCTTGGACTTGGA 58.875 50.000 0.00 0.00 0.00 3.53
1021 1045 1.806542 CATTGACGACCTTGGACTTGG 59.193 52.381 0.00 0.00 0.00 3.61
1022 1046 2.480419 GACATTGACGACCTTGGACTTG 59.520 50.000 0.00 0.00 0.00 3.16
1024 1048 1.336887 CGACATTGACGACCTTGGACT 60.337 52.381 2.30 0.00 0.00 3.85
1105 1156 2.575525 CGAGAGCGTCAGTGCGAG 60.576 66.667 10.49 0.00 40.67 5.03
1360 1412 5.570205 TCTCGGAGATAGAATACTCTGGT 57.430 43.478 2.97 0.00 39.25 4.00
1362 1414 7.626240 GCAGAATCTCGGAGATAGAATACTCTG 60.626 44.444 25.33 25.33 39.88 3.35
1363 1415 6.374333 GCAGAATCTCGGAGATAGAATACTCT 59.626 42.308 20.20 14.04 32.89 3.24
1364 1416 6.374333 AGCAGAATCTCGGAGATAGAATACTC 59.626 42.308 20.20 12.15 32.89 2.59
1365 1417 6.245408 AGCAGAATCTCGGAGATAGAATACT 58.755 40.000 20.20 10.63 32.89 2.12
1366 1418 6.509418 AGCAGAATCTCGGAGATAGAATAC 57.491 41.667 20.20 8.74 32.89 1.89
1402 1928 1.667212 GTTTGTTTGTTCGACGAGGGT 59.333 47.619 0.00 0.00 0.00 4.34
1531 2072 2.495669 TCAGTGTCAGTGTCAGTGTCAA 59.504 45.455 20.07 3.77 37.47 3.18
1554 2095 4.160439 TGAGATTAAGCTGACGACCAATCT 59.840 41.667 0.00 0.00 35.89 2.40
1570 2115 4.686972 CTGGCTTCACTCGAATGAGATTA 58.313 43.478 0.00 0.00 45.57 1.75
1575 2124 0.391661 GGCTGGCTTCACTCGAATGA 60.392 55.000 0.00 0.00 0.00 2.57
1580 2129 1.447489 CTCTGGCTGGCTTCACTCG 60.447 63.158 2.00 0.00 0.00 4.18
1582 2131 2.350514 GCTCTGGCTGGCTTCACT 59.649 61.111 2.00 0.00 35.22 3.41
1593 2142 2.176273 GTATGCGCACAGGCTCTGG 61.176 63.158 14.90 0.00 38.10 3.86
1594 2143 2.176273 GGTATGCGCACAGGCTCTG 61.176 63.158 14.90 1.16 38.10 3.35
1595 2144 2.187946 GGTATGCGCACAGGCTCT 59.812 61.111 14.90 0.00 38.10 4.09
1596 2145 3.264897 CGGTATGCGCACAGGCTC 61.265 66.667 14.90 0.00 38.10 4.70
1606 2155 3.123959 TGAGTTAAGTTTTCGCGGTATGC 59.876 43.478 6.13 0.00 41.47 3.14
1607 2156 4.624024 TCTGAGTTAAGTTTTCGCGGTATG 59.376 41.667 6.13 0.00 0.00 2.39
1608 2157 4.813027 TCTGAGTTAAGTTTTCGCGGTAT 58.187 39.130 6.13 0.00 0.00 2.73
1609 2158 4.241590 TCTGAGTTAAGTTTTCGCGGTA 57.758 40.909 6.13 0.00 0.00 4.02
1610 2159 3.102052 TCTGAGTTAAGTTTTCGCGGT 57.898 42.857 6.13 0.00 0.00 5.68
1611 2160 3.062234 GGATCTGAGTTAAGTTTTCGCGG 59.938 47.826 6.13 0.00 0.00 6.46
1612 2161 3.062234 GGGATCTGAGTTAAGTTTTCGCG 59.938 47.826 0.00 0.00 0.00 5.87
1613 2162 3.062234 CGGGATCTGAGTTAAGTTTTCGC 59.938 47.826 0.00 0.00 0.00 4.70
1614 2163 4.243270 ACGGGATCTGAGTTAAGTTTTCG 58.757 43.478 0.00 0.00 0.00 3.46
1615 2164 8.196103 AGTATACGGGATCTGAGTTAAGTTTTC 58.804 37.037 0.00 0.00 0.00 2.29
1616 2165 8.075761 AGTATACGGGATCTGAGTTAAGTTTT 57.924 34.615 0.00 0.00 0.00 2.43
1617 2166 7.560626 AGAGTATACGGGATCTGAGTTAAGTTT 59.439 37.037 0.00 0.00 0.00 2.66
1619 2168 6.603224 AGAGTATACGGGATCTGAGTTAAGT 58.397 40.000 0.00 0.00 0.00 2.24
1620 2169 8.095792 TCTAGAGTATACGGGATCTGAGTTAAG 58.904 40.741 0.00 0.00 0.00 1.85
1621 2170 7.971201 TCTAGAGTATACGGGATCTGAGTTAA 58.029 38.462 0.00 0.00 0.00 2.01
1622 2171 7.550597 TCTAGAGTATACGGGATCTGAGTTA 57.449 40.000 0.00 0.00 0.00 2.24
1625 2191 5.349270 CGTTCTAGAGTATACGGGATCTGAG 59.651 48.000 6.77 0.00 0.00 3.35
1638 2204 3.259876 ACCAAATGCACCGTTCTAGAGTA 59.740 43.478 0.00 0.00 0.00 2.59
1639 2205 2.038557 ACCAAATGCACCGTTCTAGAGT 59.961 45.455 0.00 0.00 0.00 3.24
1640 2206 2.673368 GACCAAATGCACCGTTCTAGAG 59.327 50.000 0.00 0.00 0.00 2.43
1641 2207 2.695359 GACCAAATGCACCGTTCTAGA 58.305 47.619 0.00 0.00 0.00 2.43
1642 2208 1.393539 CGACCAAATGCACCGTTCTAG 59.606 52.381 0.00 0.00 0.00 2.43
1655 2221 5.918011 GCATTTCACTGAAAATACGACCAAA 59.082 36.000 8.28 0.00 35.11 3.28
1690 2256 3.618690 ACATTGCTAGTGAGTCCCTTC 57.381 47.619 0.00 0.00 0.00 3.46
1691 2257 3.838317 TGTACATTGCTAGTGAGTCCCTT 59.162 43.478 0.00 0.00 0.00 3.95
1727 2295 4.319984 CCATCATGTGCATAAGACGGAATG 60.320 45.833 0.00 0.00 0.00 2.67
1739 2307 0.107066 CCTGCCTACCATCATGTGCA 60.107 55.000 0.00 0.00 0.00 4.57
1780 2350 5.825151 AGTACTACTCCGGTGGATAAGTTAC 59.175 44.000 8.63 1.14 31.78 2.50
1820 2403 6.420588 CGCATGATGCAAAAGAAAAGAAAAA 58.579 32.000 18.47 0.00 45.36 1.94
1821 2404 5.558653 GCGCATGATGCAAAAGAAAAGAAAA 60.559 36.000 18.47 0.00 45.36 2.29
1822 2405 4.084433 GCGCATGATGCAAAAGAAAAGAAA 60.084 37.500 18.47 0.00 45.36 2.52
1823 2406 3.429543 GCGCATGATGCAAAAGAAAAGAA 59.570 39.130 18.47 0.00 45.36 2.52
1824 2407 2.988493 GCGCATGATGCAAAAGAAAAGA 59.012 40.909 18.47 0.00 45.36 2.52
1825 2408 2.991190 AGCGCATGATGCAAAAGAAAAG 59.009 40.909 18.47 0.00 45.36 2.27
1889 2507 2.721425 TCGGTTCAAAAGGACAAGGT 57.279 45.000 0.00 0.00 0.00 3.50
1892 2510 3.284793 TCCTTCGGTTCAAAAGGACAA 57.715 42.857 0.00 0.00 44.74 3.18
1908 2527 7.039223 GGCTTTGAATTGATCATGGATATCCTT 60.039 37.037 22.35 13.64 38.03 3.36
1937 2560 1.101049 CCCGTGTGGCTTTGAACAGT 61.101 55.000 0.00 0.00 0.00 3.55
1964 2602 1.152030 ACAGAGACAGAGGGGCCAA 60.152 57.895 4.39 0.00 0.00 4.52
2039 2713 3.405831 TGCTGACATGAAAAGTCTGAGG 58.594 45.455 0.00 0.00 37.18 3.86
2208 2884 6.586344 TGGATTTCAGATAACAGGACAGATC 58.414 40.000 0.00 0.00 0.00 2.75
2240 2916 2.787473 TGGTCACAGATTCACATCCC 57.213 50.000 0.00 0.00 0.00 3.85
2303 2980 2.551270 TGGCTTCAGGACTAGTTGGAT 58.449 47.619 0.00 0.00 0.00 3.41
2398 3084 4.310769 CTTCTGTGTCCCTCAACTTAGTG 58.689 47.826 0.00 0.00 0.00 2.74
2411 3097 3.485877 GGATAATTGCGTGCTTCTGTGTC 60.486 47.826 0.00 0.00 0.00 3.67
2421 3107 6.791887 ATTCTACATGAGGATAATTGCGTG 57.208 37.500 0.00 0.00 0.00 5.34
2474 3162 1.287815 CACGCCGTAGAGTCAACCA 59.712 57.895 0.00 0.00 0.00 3.67
2477 3165 1.582968 GGACACGCCGTAGAGTCAA 59.417 57.895 8.22 0.00 34.19 3.18
2478 3166 3.271014 GGACACGCCGTAGAGTCA 58.729 61.111 8.22 0.00 34.19 3.41
2500 3211 4.214545 CGTAACAAACAACCAGAGGCAATA 59.785 41.667 0.00 0.00 0.00 1.90
2509 3220 1.331138 CTTCGCCGTAACAAACAACCA 59.669 47.619 0.00 0.00 0.00 3.67
2591 3317 2.409870 AACTATGCAAGGCCAGCGC 61.410 57.895 5.01 0.00 33.85 5.92
2663 3400 3.766691 CCATGCCAGGCAACCAGC 61.767 66.667 20.84 0.00 43.62 4.85
2664 3401 1.380785 ATCCATGCCAGGCAACCAG 60.381 57.895 20.84 8.87 43.62 4.00
2665 3402 1.380246 GATCCATGCCAGGCAACCA 60.380 57.895 20.84 4.98 43.62 3.67
2666 3403 0.685458 AAGATCCATGCCAGGCAACC 60.685 55.000 20.84 6.01 43.62 3.77
2736 3473 3.434309 GCCCATGGCCAGATATAATTGT 58.566 45.455 13.05 0.00 44.06 2.71
2771 3508 1.303806 TTTTAGGCCCGACCCAAGC 60.304 57.895 0.00 0.00 40.58 4.01
2772 3509 0.326927 TCTTTTAGGCCCGACCCAAG 59.673 55.000 0.00 0.00 40.58 3.61
2773 3510 0.326927 CTCTTTTAGGCCCGACCCAA 59.673 55.000 0.00 0.00 40.58 4.12
2774 3511 1.988015 CTCTTTTAGGCCCGACCCA 59.012 57.895 0.00 0.00 40.58 4.51
2775 3512 1.451567 GCTCTTTTAGGCCCGACCC 60.452 63.158 0.00 0.00 40.58 4.46
2776 3513 1.451567 GGCTCTTTTAGGCCCGACC 60.452 63.158 0.00 0.00 44.97 4.79
2777 3514 4.220413 GGCTCTTTTAGGCCCGAC 57.780 61.111 0.00 0.00 44.97 4.79
2783 3520 1.003580 TCTGCTGTGGGCTCTTTTAGG 59.996 52.381 0.00 0.00 42.39 2.69
2784 3521 2.479566 TCTGCTGTGGGCTCTTTTAG 57.520 50.000 0.00 0.00 42.39 1.85
2785 3522 2.949177 TTCTGCTGTGGGCTCTTTTA 57.051 45.000 0.00 0.00 42.39 1.52
2786 3523 2.071778 TTTCTGCTGTGGGCTCTTTT 57.928 45.000 0.00 0.00 42.39 2.27
2787 3524 1.683385 GTTTTCTGCTGTGGGCTCTTT 59.317 47.619 0.00 0.00 42.39 2.52
2788 3525 1.133668 AGTTTTCTGCTGTGGGCTCTT 60.134 47.619 0.00 0.00 42.39 2.85
2789 3526 0.475906 AGTTTTCTGCTGTGGGCTCT 59.524 50.000 0.00 0.00 42.39 4.09
2790 3527 0.595095 CAGTTTTCTGCTGTGGGCTC 59.405 55.000 0.00 0.00 41.24 4.70
2791 3528 0.183492 TCAGTTTTCTGCTGTGGGCT 59.817 50.000 0.00 0.00 46.59 5.19
2792 3529 0.595095 CTCAGTTTTCTGCTGTGGGC 59.405 55.000 0.00 0.00 46.59 5.36
2793 3530 1.242076 CCTCAGTTTTCTGCTGTGGG 58.758 55.000 5.73 0.91 46.59 4.61
2794 3531 0.595095 GCCTCAGTTTTCTGCTGTGG 59.405 55.000 8.52 8.52 46.59 4.17
2795 3532 0.595095 GGCCTCAGTTTTCTGCTGTG 59.405 55.000 0.00 0.00 46.59 3.66
2796 3533 0.538287 GGGCCTCAGTTTTCTGCTGT 60.538 55.000 0.84 0.00 46.59 4.40
2797 3534 0.538057 TGGGCCTCAGTTTTCTGCTG 60.538 55.000 4.53 0.00 46.59 4.41
2798 3535 0.251077 CTGGGCCTCAGTTTTCTGCT 60.251 55.000 4.53 0.00 46.59 4.24
2799 3536 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
2800 3537 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
2801 3538 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
2802 3539 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
2819 3556 2.150051 GTGATAGGGCCTGGGAGGG 61.150 68.421 18.53 0.00 35.37 4.30
2820 3557 1.074167 AGTGATAGGGCCTGGGAGG 60.074 63.158 18.53 0.00 38.80 4.30
2821 3558 1.414061 CCAGTGATAGGGCCTGGGAG 61.414 65.000 18.53 0.72 41.69 4.30
2822 3559 1.384502 CCAGTGATAGGGCCTGGGA 60.385 63.158 18.53 0.00 41.69 4.37
2823 3560 3.244616 CCAGTGATAGGGCCTGGG 58.755 66.667 18.53 4.05 41.69 4.45
2824 3561 3.244616 CCCAGTGATAGGGCCTGG 58.755 66.667 18.53 8.45 44.39 4.45
2830 3567 3.199946 TGAAAAGTAGGCCCAGTGATAGG 59.800 47.826 0.00 0.00 0.00 2.57
2831 3568 4.487714 TGAAAAGTAGGCCCAGTGATAG 57.512 45.455 0.00 0.00 0.00 2.08
2832 3569 4.843728 CTTGAAAAGTAGGCCCAGTGATA 58.156 43.478 0.00 0.00 39.70 2.15
2833 3570 3.690460 CTTGAAAAGTAGGCCCAGTGAT 58.310 45.455 0.00 0.00 39.70 3.06
2834 3571 3.140325 CTTGAAAAGTAGGCCCAGTGA 57.860 47.619 0.00 0.00 39.70 3.41
2847 3584 1.152652 TCGGGCTTGGGCTTGAAAA 60.153 52.632 0.00 0.00 38.73 2.29
2848 3585 1.901464 GTCGGGCTTGGGCTTGAAA 60.901 57.895 0.00 0.00 38.73 2.69
2849 3586 2.282180 GTCGGGCTTGGGCTTGAA 60.282 61.111 0.00 0.00 38.73 2.69
2850 3587 4.344865 GGTCGGGCTTGGGCTTGA 62.345 66.667 0.00 0.00 38.73 3.02
2855 3592 3.411517 AGATGGGTCGGGCTTGGG 61.412 66.667 0.00 0.00 0.00 4.12
2856 3593 2.124570 CAGATGGGTCGGGCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
2857 3594 2.124570 CCAGATGGGTCGGGCTTG 60.125 66.667 0.00 0.00 32.91 4.01
2866 3603 2.532250 AGGGCTTTTTACCAGATGGG 57.468 50.000 3.48 0.00 44.81 4.00
2867 3604 3.954258 CCTTAGGGCTTTTTACCAGATGG 59.046 47.826 0.00 0.00 42.17 3.51
2868 3605 3.954258 CCCTTAGGGCTTTTTACCAGATG 59.046 47.826 3.52 0.00 35.35 2.90
2869 3606 4.251103 CCCTTAGGGCTTTTTACCAGAT 57.749 45.455 3.52 0.00 35.35 2.90
2870 3607 3.732048 CCCTTAGGGCTTTTTACCAGA 57.268 47.619 3.52 0.00 35.35 3.86
2904 3641 0.323087 TTTTAAGGAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
2905 3642 2.024414 CATTTTAAGGAAGAGGCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
2906 3643 1.405463 GCATTTTAAGGAAGAGGCCCG 59.595 52.381 0.00 0.00 0.00 6.13
2907 3644 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
2908 3645 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
2909 3646 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
2910 3647 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
2911 3648 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
2912 3649 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
2925 3662 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
2926 3663 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
2927 3664 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
2928 3665 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
2929 3666 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
2930 3667 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
2935 3672 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
2936 3673 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
2945 3682 3.470888 CAGTAGGGCCTGGACGGG 61.471 72.222 18.53 1.44 0.00 5.28
2956 3693 1.073923 ACTTTTGAGCCCACCAGTAGG 59.926 52.381 0.00 0.00 42.21 3.18
2957 3694 2.224523 TGACTTTTGAGCCCACCAGTAG 60.225 50.000 0.00 0.00 0.00 2.57
2958 3695 1.771854 TGACTTTTGAGCCCACCAGTA 59.228 47.619 0.00 0.00 0.00 2.74
2959 3696 0.550914 TGACTTTTGAGCCCACCAGT 59.449 50.000 0.00 0.00 0.00 4.00
2960 3697 1.242076 CTGACTTTTGAGCCCACCAG 58.758 55.000 0.00 0.00 0.00 4.00
2961 3698 0.178992 CCTGACTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2962 3699 1.527433 GCCTGACTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
2963 3700 1.527433 GGCCTGACTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
2964 3701 1.228552 GGCCTGACTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
2965 3702 0.328258 TAGGCCTGACTTTTGAGCCC 59.672 55.000 17.99 0.00 45.00 5.19
2966 3703 2.087646 CTTAGGCCTGACTTTTGAGCC 58.912 52.381 17.99 0.00 44.20 4.70
2967 3704 1.470494 GCTTAGGCCTGACTTTTGAGC 59.530 52.381 17.99 7.87 0.00 4.26
2981 3718 4.586235 CCATGGGCCGGGCTTAGG 62.586 72.222 28.80 21.47 0.00 2.69
2982 3719 4.586235 CCCATGGGCCGGGCTTAG 62.586 72.222 28.80 16.62 36.72 2.18
3012 3749 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
3013 3750 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
3014 3751 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
3022 3759 1.284785 CAGGACTGGCCCTAAAATCCA 59.715 52.381 0.00 0.00 37.37 3.41
3023 3760 1.410224 CCAGGACTGGCCCTAAAATCC 60.410 57.143 5.27 0.00 44.73 3.01
3024 3761 2.058593 CCAGGACTGGCCCTAAAATC 57.941 55.000 5.27 0.00 44.73 2.17
3051 3788 3.775654 CTCAGACCCGGCCCTGTC 61.776 72.222 17.30 10.61 0.00 3.51
3052 3789 3.625632 ATCTCAGACCCGGCCCTGT 62.626 63.158 17.30 0.00 0.00 4.00
3053 3790 2.765807 ATCTCAGACCCGGCCCTG 60.766 66.667 13.29 13.29 0.00 4.45
3054 3791 2.765807 CATCTCAGACCCGGCCCT 60.766 66.667 0.00 0.00 0.00 5.19
3055 3792 3.866582 CCATCTCAGACCCGGCCC 61.867 72.222 0.00 0.00 0.00 5.80
3056 3793 4.554036 GCCATCTCAGACCCGGCC 62.554 72.222 0.00 0.00 36.73 6.13
3057 3794 4.554036 GGCCATCTCAGACCCGGC 62.554 72.222 0.00 3.37 42.21 6.13
3058 3795 3.083349 TGGCCATCTCAGACCCGG 61.083 66.667 0.00 0.00 0.00 5.73
3059 3796 2.503061 CTGGCCATCTCAGACCCG 59.497 66.667 5.51 0.00 34.36 5.28
3060 3797 1.690633 TCCTGGCCATCTCAGACCC 60.691 63.158 5.51 0.00 34.36 4.46
3061 3798 0.980231 AGTCCTGGCCATCTCAGACC 60.980 60.000 5.51 0.00 34.36 3.85
3062 3799 1.410882 GTAGTCCTGGCCATCTCAGAC 59.589 57.143 5.51 8.85 34.36 3.51
3063 3800 1.689575 GGTAGTCCTGGCCATCTCAGA 60.690 57.143 5.51 0.00 34.36 3.27
3064 3801 0.755686 GGTAGTCCTGGCCATCTCAG 59.244 60.000 5.51 0.00 0.00 3.35
3065 3802 0.339859 AGGTAGTCCTGGCCATCTCA 59.660 55.000 5.51 0.00 43.33 3.27
3066 3803 1.964933 GTAGGTAGTCCTGGCCATCTC 59.035 57.143 5.51 0.00 44.81 2.75
3067 3804 1.291033 TGTAGGTAGTCCTGGCCATCT 59.709 52.381 5.51 8.22 44.81 2.90
3068 3805 1.789523 TGTAGGTAGTCCTGGCCATC 58.210 55.000 5.51 0.00 44.81 3.51
3069 3806 2.263895 TTGTAGGTAGTCCTGGCCAT 57.736 50.000 5.51 0.00 44.81 4.40
3070 3807 1.837439 CATTGTAGGTAGTCCTGGCCA 59.163 52.381 4.71 4.71 44.81 5.36
3071 3808 2.116238 TCATTGTAGGTAGTCCTGGCC 58.884 52.381 0.00 0.00 44.81 5.36
3072 3809 3.197983 ACTTCATTGTAGGTAGTCCTGGC 59.802 47.826 0.00 0.00 44.81 4.85
3073 3810 4.466370 TGACTTCATTGTAGGTAGTCCTGG 59.534 45.833 0.00 0.00 44.81 4.45
3074 3811 5.661056 TGACTTCATTGTAGGTAGTCCTG 57.339 43.478 0.00 0.00 44.81 3.86
3075 3812 7.126733 ACTATGACTTCATTGTAGGTAGTCCT 58.873 38.462 4.73 0.00 39.75 3.85
3076 3813 7.349412 ACTATGACTTCATTGTAGGTAGTCC 57.651 40.000 4.73 0.00 39.75 3.85
3077 3814 7.133513 CGACTATGACTTCATTGTAGGTAGTC 58.866 42.308 6.33 15.08 41.14 2.59
3078 3815 6.459848 GCGACTATGACTTCATTGTAGGTAGT 60.460 42.308 12.96 3.21 41.14 2.73
3079 3816 5.915758 GCGACTATGACTTCATTGTAGGTAG 59.084 44.000 12.96 0.57 41.14 3.18
3080 3817 5.593095 AGCGACTATGACTTCATTGTAGGTA 59.407 40.000 13.70 0.00 40.82 3.08
3081 3818 4.402793 AGCGACTATGACTTCATTGTAGGT 59.597 41.667 10.92 10.92 41.14 3.08
3082 3819 4.938080 AGCGACTATGACTTCATTGTAGG 58.062 43.478 12.96 7.55 41.14 3.18
3083 3820 5.276584 GCAAGCGACTATGACTTCATTGTAG 60.277 44.000 6.33 7.65 41.14 2.74
3361 4159 1.222039 AGGGCCCCAAACTAAGGTTTT 59.778 47.619 21.43 0.00 42.96 2.43
3688 5380 3.925379 TGCTTCTCATGAACATGTACGT 58.075 40.909 13.35 0.00 39.72 3.57
3764 5460 5.302823 AGCTTTCACCTGGATATATTTTGGC 59.697 40.000 0.00 0.00 0.00 4.52
4260 5965 2.094545 GGCAGCAAGTGAAAAGGGTATG 60.095 50.000 0.00 0.00 0.00 2.39
4343 6061 1.470979 CCGTGTATCCAGAAGTTCCGG 60.471 57.143 0.00 0.00 0.00 5.14
4361 6079 2.045926 CCAAGAGCCCCTGTTCCG 60.046 66.667 0.00 0.00 0.00 4.30
4379 6097 1.449956 GAGCTTCTGAGGCAGGCAG 60.450 63.158 14.45 0.00 34.71 4.85
4510 6228 1.790623 TCGCGTTTTTCAGCTCTACAC 59.209 47.619 5.77 0.00 0.00 2.90
4676 6400 0.795698 CGCAACACGTCATCAATGGA 59.204 50.000 0.00 0.00 36.87 3.41
4844 6568 2.171237 TGGTCTGGAATATGTGGAGCTG 59.829 50.000 0.00 0.00 0.00 4.24
4851 6575 4.574674 TGAGCTTTGGTCTGGAATATGT 57.425 40.909 0.00 0.00 0.00 2.29
4961 6685 4.089361 CAGCCCCAAATAGGAGAAAAACT 58.911 43.478 0.00 0.00 41.22 2.66
5042 6766 2.058798 CACCTACTACGCACACACAAG 58.941 52.381 0.00 0.00 0.00 3.16
5507 7231 2.998670 TCTCTCTCATTTTTGAGCGCAG 59.001 45.455 11.47 0.00 35.97 5.18
5531 7255 3.681313 GCATGTCCTCCCTCTCTTTCTTC 60.681 52.174 0.00 0.00 0.00 2.87
5532 7256 2.238395 GCATGTCCTCCCTCTCTTTCTT 59.762 50.000 0.00 0.00 0.00 2.52
5605 7329 2.508439 CCAATCACCGACGTCCCG 60.508 66.667 10.58 2.59 0.00 5.14
5642 7366 2.892425 CATCTCCGCCTGAACCGC 60.892 66.667 0.00 0.00 0.00 5.68
5678 7402 0.742281 CCAACCAGCGTCATCTCCAG 60.742 60.000 0.00 0.00 0.00 3.86
5685 7409 1.891919 GACAAGCCAACCAGCGTCA 60.892 57.895 0.00 0.00 38.01 4.35
5733 7457 3.423154 CCGGCAAAGCACGACCTC 61.423 66.667 0.00 0.00 0.00 3.85
5743 7467 2.982130 GCTCCTCTCTCCGGCAAA 59.018 61.111 0.00 0.00 0.00 3.68
5794 7518 2.819550 CCGTTATCACCCTCCCGG 59.180 66.667 0.00 0.00 37.81 5.73
5803 7527 1.609635 TTCGAGGGCAGCCGTTATCA 61.610 55.000 8.37 0.00 0.00 2.15
5807 7531 2.257409 ATCATTCGAGGGCAGCCGTT 62.257 55.000 8.37 0.00 0.00 4.44
5810 7534 1.230324 GTAATCATTCGAGGGCAGCC 58.770 55.000 1.26 1.26 0.00 4.85
5823 7547 1.195900 GACGTTTTGCGCTGGTAATCA 59.804 47.619 9.73 0.00 46.11 2.57
5835 7559 3.724374 TCAGGTGGTTCTAGACGTTTTG 58.276 45.455 0.00 0.00 0.00 2.44
5836 7560 4.411256 TTCAGGTGGTTCTAGACGTTTT 57.589 40.909 0.00 0.00 0.00 2.43
5860 7584 5.441500 TGTTCTCACCACCAATGTAGAAAA 58.558 37.500 0.00 0.00 0.00 2.29
5862 7586 4.698201 TGTTCTCACCACCAATGTAGAA 57.302 40.909 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.