Multiple sequence alignment - TraesCS1B01G069100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G069100 chr1B 100.000 4741 0 0 1 4741 53923858 53928598 0.000000e+00 8756.0
1 TraesCS1B01G069100 chr1B 97.656 384 9 0 4 387 53866007 53866390 0.000000e+00 660.0
2 TraesCS1B01G069100 chr1B 96.915 389 12 0 1 389 49603385 49603773 0.000000e+00 652.0
3 TraesCS1B01G069100 chr1D 90.118 1872 118 26 2897 4723 35633072 35634921 0.000000e+00 2370.0
4 TraesCS1B01G069100 chr1D 91.243 1142 69 11 1775 2899 35631915 35633042 0.000000e+00 1526.0
5 TraesCS1B01G069100 chr1D 88.612 562 25 16 1116 1668 35631328 35631859 0.000000e+00 647.0
6 TraesCS1B01G069100 chr1D 92.857 406 19 2 392 796 35630677 35631073 8.840000e-162 580.0
7 TraesCS1B01G069100 chr1D 95.652 322 10 2 779 1099 35631029 35631347 9.100000e-142 514.0
8 TraesCS1B01G069100 chr2A 84.190 1556 205 23 2893 4435 754110092 754108565 0.000000e+00 1472.0
9 TraesCS1B01G069100 chr2A 74.516 930 168 48 2893 3795 773727476 773728363 1.630000e-89 340.0
10 TraesCS1B01G069100 chr2A 73.232 721 148 30 1893 2603 16321433 16322118 2.220000e-53 220.0
11 TraesCS1B01G069100 chr2A 74.677 387 77 18 1820 2200 596501359 596500988 8.220000e-33 152.0
12 TraesCS1B01G069100 chr2A 72.365 351 58 25 1405 1732 712202381 712202047 1.830000e-09 75.0
13 TraesCS1B01G069100 chr1A 94.062 943 51 2 3263 4201 34395897 34396838 0.000000e+00 1426.0
14 TraesCS1B01G069100 chr1A 86.224 1176 84 27 1762 2897 34383144 34384281 0.000000e+00 1203.0
15 TraesCS1B01G069100 chr1A 90.698 602 23 14 2696 3265 34384080 34384680 0.000000e+00 771.0
16 TraesCS1B01G069100 chr1A 91.265 332 26 1 4201 4529 34396871 34397202 2.600000e-122 449.0
17 TraesCS1B01G069100 chr1A 92.226 283 17 3 611 893 34381835 34382112 3.440000e-106 396.0
18 TraesCS1B01G069100 chr1A 85.260 346 35 9 1295 1638 34382474 34382805 4.540000e-90 342.0
19 TraesCS1B01G069100 chr1A 91.163 215 18 1 4525 4738 34405242 34405456 1.670000e-74 291.0
20 TraesCS1B01G069100 chr1A 93.023 172 8 3 887 1057 34382306 34382474 1.020000e-61 248.0
21 TraesCS1B01G069100 chr1A 90.446 157 13 2 382 536 34378341 34378497 6.220000e-49 206.0
22 TraesCS1B01G069100 chr1A 100.000 63 0 0 392 454 33896368 33896430 3.000000e-22 117.0
23 TraesCS1B01G069100 chr2D 85.559 1288 162 14 2893 4164 622395424 622394145 0.000000e+00 1327.0
24 TraesCS1B01G069100 chr2D 82.656 1107 154 19 1762 2854 622397265 622396183 0.000000e+00 946.0
25 TraesCS1B01G069100 chr2D 73.026 975 208 42 3201 4159 13938447 13937512 4.640000e-75 292.0
26 TraesCS1B01G069100 chr2D 85.204 196 23 2 4240 4429 622392501 622392306 3.740000e-46 196.0
27 TraesCS1B01G069100 chr2D 74.247 299 66 9 3587 3879 107760440 107760733 1.080000e-21 115.0
28 TraesCS1B01G069100 chr2D 74.503 302 57 18 1434 1728 13940078 13939790 3.880000e-21 113.0
29 TraesCS1B01G069100 chr7B 97.416 387 10 0 1 387 500781669 500782055 0.000000e+00 660.0
30 TraesCS1B01G069100 chr7B 97.143 385 10 1 1 384 406937746 406938130 0.000000e+00 649.0
31 TraesCS1B01G069100 chr7B 96.410 390 14 0 1 390 417873581 417873192 1.110000e-180 643.0
32 TraesCS1B01G069100 chr7B 96.382 387 14 0 1 387 500787131 500787517 5.170000e-179 638.0
33 TraesCS1B01G069100 chr2B 96.410 390 14 0 5 394 65407996 65408385 1.110000e-180 643.0
34 TraesCS1B01G069100 chr2B 72.292 960 191 45 1893 2819 25351152 25350235 3.690000e-56 230.0
35 TraesCS1B01G069100 chr2B 73.051 449 83 24 1307 1732 689163976 689163543 1.790000e-24 124.0
36 TraesCS1B01G069100 chr5D 96.401 389 14 0 1 389 472221425 472221813 4.000000e-180 641.0
37 TraesCS1B01G069100 chr3A 95.696 395 16 1 1 395 42354859 42355252 6.690000e-178 634.0
38 TraesCS1B01G069100 chr6B 74.507 1267 245 49 2917 4160 67995662 67996873 3.320000e-131 479.0
39 TraesCS1B01G069100 chr6B 75.862 377 73 14 1820 2191 67995631 67995994 4.880000e-40 176.0
40 TraesCS1B01G069100 chr3B 74.333 300 63 11 3586 3878 742625836 742625544 1.080000e-21 115.0
41 TraesCS1B01G069100 chr3B 94.872 39 1 1 3530 3568 765125875 765125912 5.120000e-05 60.2
42 TraesCS1B01G069100 chr7A 97.143 35 0 1 1677 1710 677890084 677890050 1.840000e-04 58.4
43 TraesCS1B01G069100 chr5A 96.970 33 0 1 3533 3565 445135228 445135259 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G069100 chr1B 53923858 53928598 4740 False 8756.000000 8756 100.000000 1 4741 1 chr1B.!!$F3 4740
1 TraesCS1B01G069100 chr1D 35630677 35634921 4244 False 1127.400000 2370 91.696400 392 4723 5 chr1D.!!$F1 4331
2 TraesCS1B01G069100 chr2A 754108565 754110092 1527 True 1472.000000 1472 84.190000 2893 4435 1 chr2A.!!$R3 1542
3 TraesCS1B01G069100 chr2A 773727476 773728363 887 False 340.000000 340 74.516000 2893 3795 1 chr2A.!!$F2 902
4 TraesCS1B01G069100 chr2A 16321433 16322118 685 False 220.000000 220 73.232000 1893 2603 1 chr2A.!!$F1 710
5 TraesCS1B01G069100 chr1A 34395897 34397202 1305 False 937.500000 1426 92.663500 3263 4529 2 chr1A.!!$F4 1266
6 TraesCS1B01G069100 chr1A 34378341 34384680 6339 False 527.666667 1203 89.646167 382 3265 6 chr1A.!!$F3 2883
7 TraesCS1B01G069100 chr2D 622392306 622397265 4959 True 823.000000 1327 84.473000 1762 4429 3 chr2D.!!$R2 2667
8 TraesCS1B01G069100 chr2D 13937512 13940078 2566 True 202.500000 292 73.764500 1434 4159 2 chr2D.!!$R1 2725
9 TraesCS1B01G069100 chr2B 25350235 25351152 917 True 230.000000 230 72.292000 1893 2819 1 chr2B.!!$R1 926
10 TraesCS1B01G069100 chr6B 67995631 67996873 1242 False 327.500000 479 75.184500 1820 4160 2 chr6B.!!$F1 2340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.108615 CGCTGATCCCTCTCGTGTTT 60.109 55.0 0.00 0.0 0.0 2.83 F
1300 4774 0.105039 CAGGAGACATTAGGACGGCC 59.895 60.0 0.00 0.0 0.0 6.13 F
1402 4882 0.534203 TTCCGGTGCTCCTTGTGTTC 60.534 55.0 0.00 0.0 0.0 3.18 F
1405 4885 0.535102 CGGTGCTCCTTGTGTTCCTT 60.535 55.0 2.85 0.0 0.0 3.36 F
3037 7705 0.032678 CTATTGACGATCGCCTGGCT 59.967 55.0 16.60 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 5038 0.179250 CTGTTTGAATCGGCGACACG 60.179 55.0 13.76 0.0 0.00 4.49 R
2256 5996 0.609957 CAATGCCAGAGGGTGCTTCA 60.610 55.0 0.00 0.0 36.17 3.02 R
2500 6248 1.131771 GAGTTGGCAAAAAGAAGCGC 58.868 50.0 0.00 0.0 0.00 5.92 R
3368 9820 2.170012 ATAAGGAAGGACAGGCCGTA 57.830 50.0 0.00 0.0 43.43 4.02 R
4367 12497 0.108186 CAATGAGCCTGGTAGTCGCA 60.108 55.0 0.00 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.281091 TACGGGAGAGGGGCGATT 59.719 61.111 0.00 0.00 0.00 3.34
18 19 1.538167 TACGGGAGAGGGGCGATTA 59.462 57.895 0.00 0.00 0.00 1.75
19 20 0.538977 TACGGGAGAGGGGCGATTAG 60.539 60.000 0.00 0.00 0.00 1.73
20 21 2.574955 CGGGAGAGGGGCGATTAGG 61.575 68.421 0.00 0.00 0.00 2.69
21 22 1.459730 GGGAGAGGGGCGATTAGGT 60.460 63.158 0.00 0.00 0.00 3.08
22 23 1.054978 GGGAGAGGGGCGATTAGGTT 61.055 60.000 0.00 0.00 0.00 3.50
23 24 0.837940 GGAGAGGGGCGATTAGGTTT 59.162 55.000 0.00 0.00 0.00 3.27
24 25 1.212195 GGAGAGGGGCGATTAGGTTTT 59.788 52.381 0.00 0.00 0.00 2.43
25 26 2.356844 GGAGAGGGGCGATTAGGTTTTT 60.357 50.000 0.00 0.00 0.00 1.94
26 27 2.683362 GAGAGGGGCGATTAGGTTTTTG 59.317 50.000 0.00 0.00 0.00 2.44
27 28 1.749063 GAGGGGCGATTAGGTTTTTGG 59.251 52.381 0.00 0.00 0.00 3.28
28 29 0.821517 GGGGCGATTAGGTTTTTGGG 59.178 55.000 0.00 0.00 0.00 4.12
29 30 1.552578 GGGCGATTAGGTTTTTGGGT 58.447 50.000 0.00 0.00 0.00 4.51
30 31 2.621147 GGGGCGATTAGGTTTTTGGGTA 60.621 50.000 0.00 0.00 0.00 3.69
31 32 2.686405 GGGCGATTAGGTTTTTGGGTAG 59.314 50.000 0.00 0.00 0.00 3.18
32 33 2.098607 GGCGATTAGGTTTTTGGGTAGC 59.901 50.000 0.00 0.00 0.00 3.58
33 34 2.223180 GCGATTAGGTTTTTGGGTAGCG 60.223 50.000 0.00 0.00 0.00 4.26
34 35 3.264104 CGATTAGGTTTTTGGGTAGCGA 58.736 45.455 0.00 0.00 0.00 4.93
35 36 3.063045 CGATTAGGTTTTTGGGTAGCGAC 59.937 47.826 0.00 0.00 0.00 5.19
36 37 3.775261 TTAGGTTTTTGGGTAGCGACT 57.225 42.857 0.00 0.00 0.00 4.18
37 38 4.888326 TTAGGTTTTTGGGTAGCGACTA 57.112 40.909 0.00 0.00 0.00 2.59
38 39 3.049708 AGGTTTTTGGGTAGCGACTAC 57.950 47.619 8.07 8.07 36.33 2.73
39 40 1.728425 GGTTTTTGGGTAGCGACTACG 59.272 52.381 9.78 0.00 37.79 3.51
49 50 2.645014 CGACTACGCGACTGCTCG 60.645 66.667 15.93 7.58 43.28 5.03
57 58 4.251760 CGACTGCTCGCTTCTGTT 57.748 55.556 0.00 0.00 31.91 3.16
58 59 2.066000 CGACTGCTCGCTTCTGTTC 58.934 57.895 0.00 0.00 31.91 3.18
59 60 0.664466 CGACTGCTCGCTTCTGTTCA 60.664 55.000 0.00 0.00 31.91 3.18
60 61 1.719600 GACTGCTCGCTTCTGTTCAT 58.280 50.000 0.00 0.00 0.00 2.57
61 62 1.658095 GACTGCTCGCTTCTGTTCATC 59.342 52.381 0.00 0.00 0.00 2.92
62 63 1.274728 ACTGCTCGCTTCTGTTCATCT 59.725 47.619 0.00 0.00 0.00 2.90
63 64 2.493675 ACTGCTCGCTTCTGTTCATCTA 59.506 45.455 0.00 0.00 0.00 1.98
64 65 2.857152 CTGCTCGCTTCTGTTCATCTAC 59.143 50.000 0.00 0.00 0.00 2.59
65 66 1.849219 GCTCGCTTCTGTTCATCTACG 59.151 52.381 0.00 0.00 0.00 3.51
66 67 2.732597 GCTCGCTTCTGTTCATCTACGT 60.733 50.000 0.00 0.00 0.00 3.57
67 68 3.102276 CTCGCTTCTGTTCATCTACGTC 58.898 50.000 0.00 0.00 0.00 4.34
68 69 2.159421 TCGCTTCTGTTCATCTACGTCC 60.159 50.000 0.00 0.00 0.00 4.79
69 70 2.186076 GCTTCTGTTCATCTACGTCCG 58.814 52.381 0.00 0.00 0.00 4.79
70 71 2.186076 CTTCTGTTCATCTACGTCCGC 58.814 52.381 0.00 0.00 0.00 5.54
71 72 1.170442 TCTGTTCATCTACGTCCGCA 58.830 50.000 0.00 0.00 0.00 5.69
72 73 1.749063 TCTGTTCATCTACGTCCGCAT 59.251 47.619 0.00 0.00 0.00 4.73
73 74 2.120232 CTGTTCATCTACGTCCGCATC 58.880 52.381 0.00 0.00 0.00 3.91
74 75 1.474879 TGTTCATCTACGTCCGCATCA 59.525 47.619 0.00 0.00 0.00 3.07
75 76 1.852895 GTTCATCTACGTCCGCATCAC 59.147 52.381 0.00 0.00 0.00 3.06
76 77 0.384309 TCATCTACGTCCGCATCACC 59.616 55.000 0.00 0.00 0.00 4.02
77 78 0.385751 CATCTACGTCCGCATCACCT 59.614 55.000 0.00 0.00 0.00 4.00
78 79 1.112113 ATCTACGTCCGCATCACCTT 58.888 50.000 0.00 0.00 0.00 3.50
79 80 0.454600 TCTACGTCCGCATCACCTTC 59.545 55.000 0.00 0.00 0.00 3.46
80 81 0.866061 CTACGTCCGCATCACCTTCG 60.866 60.000 0.00 0.00 0.00 3.79
81 82 1.588824 TACGTCCGCATCACCTTCGT 61.589 55.000 0.00 0.00 0.00 3.85
82 83 2.158959 CGTCCGCATCACCTTCGTC 61.159 63.158 0.00 0.00 0.00 4.20
83 84 1.080093 GTCCGCATCACCTTCGTCA 60.080 57.895 0.00 0.00 0.00 4.35
84 85 0.460284 GTCCGCATCACCTTCGTCAT 60.460 55.000 0.00 0.00 0.00 3.06
85 86 0.179111 TCCGCATCACCTTCGTCATC 60.179 55.000 0.00 0.00 0.00 2.92
86 87 0.460109 CCGCATCACCTTCGTCATCA 60.460 55.000 0.00 0.00 0.00 3.07
87 88 0.647410 CGCATCACCTTCGTCATCAC 59.353 55.000 0.00 0.00 0.00 3.06
88 89 1.009829 GCATCACCTTCGTCATCACC 58.990 55.000 0.00 0.00 0.00 4.02
89 90 1.675714 GCATCACCTTCGTCATCACCA 60.676 52.381 0.00 0.00 0.00 4.17
90 91 2.910199 CATCACCTTCGTCATCACCAT 58.090 47.619 0.00 0.00 0.00 3.55
91 92 2.385013 TCACCTTCGTCATCACCATG 57.615 50.000 0.00 0.00 0.00 3.66
92 93 1.623311 TCACCTTCGTCATCACCATGT 59.377 47.619 0.00 0.00 0.00 3.21
93 94 2.002586 CACCTTCGTCATCACCATGTC 58.997 52.381 0.00 0.00 0.00 3.06
94 95 1.280982 CCTTCGTCATCACCATGTCG 58.719 55.000 0.00 0.00 41.30 4.35
95 96 1.135112 CCTTCGTCATCACCATGTCGA 60.135 52.381 1.06 1.06 45.11 4.20
96 97 1.920574 CTTCGTCATCACCATGTCGAC 59.079 52.381 9.11 9.11 45.99 4.20
97 98 0.172578 TCGTCATCACCATGTCGACC 59.827 55.000 14.12 0.00 42.97 4.79
98 99 1.139816 CGTCATCACCATGTCGACCG 61.140 60.000 14.12 3.93 42.17 4.79
99 100 0.172578 GTCATCACCATGTCGACCGA 59.827 55.000 14.12 2.20 0.00 4.69
100 101 0.172578 TCATCACCATGTCGACCGAC 59.827 55.000 14.12 14.88 44.77 4.79
124 125 3.485431 CGTGCCGCTGCTGAGAAG 61.485 66.667 0.70 0.00 38.71 2.85
125 126 3.123620 GTGCCGCTGCTGAGAAGG 61.124 66.667 0.70 0.00 38.71 3.46
129 130 4.441695 CGCTGCTGAGAAGGCCGA 62.442 66.667 0.00 0.00 0.00 5.54
130 131 2.511145 GCTGCTGAGAAGGCCGAG 60.511 66.667 0.00 0.00 0.00 4.63
131 132 2.186384 CTGCTGAGAAGGCCGAGG 59.814 66.667 0.00 0.00 0.00 4.63
132 133 4.087892 TGCTGAGAAGGCCGAGGC 62.088 66.667 5.37 5.37 41.06 4.70
142 143 3.267974 GCCGAGGCCAACAAGAAG 58.732 61.111 5.01 0.00 34.56 2.85
143 144 2.335712 GCCGAGGCCAACAAGAAGG 61.336 63.158 5.01 0.00 34.56 3.46
148 149 4.056125 GCCAACAAGAAGGCCGCC 62.056 66.667 0.00 0.00 45.18 6.13
149 150 3.737172 CCAACAAGAAGGCCGCCG 61.737 66.667 3.05 0.00 0.00 6.46
150 151 2.668212 CAACAAGAAGGCCGCCGA 60.668 61.111 3.05 0.00 0.00 5.54
151 152 2.358737 AACAAGAAGGCCGCCGAG 60.359 61.111 3.05 0.00 0.00 4.63
152 153 3.901797 AACAAGAAGGCCGCCGAGG 62.902 63.158 3.05 0.00 44.97 4.63
153 154 4.082523 CAAGAAGGCCGCCGAGGA 62.083 66.667 3.05 0.00 45.00 3.71
154 155 3.083997 AAGAAGGCCGCCGAGGAT 61.084 61.111 3.05 0.00 45.00 3.24
155 156 3.391665 AAGAAGGCCGCCGAGGATG 62.392 63.158 3.05 0.00 45.00 3.51
178 179 3.431725 GCTGCTGCCACCGTTACC 61.432 66.667 3.85 0.00 0.00 2.85
179 180 3.118454 CTGCTGCCACCGTTACCG 61.118 66.667 0.00 0.00 0.00 4.02
203 204 4.096003 CGTGGCCGATTGGAGGGT 62.096 66.667 1.98 0.00 37.49 4.34
204 205 2.727392 CGTGGCCGATTGGAGGGTA 61.727 63.158 1.98 0.00 37.49 3.69
205 206 1.837090 GTGGCCGATTGGAGGGTAT 59.163 57.895 1.98 0.00 37.49 2.73
206 207 1.053424 GTGGCCGATTGGAGGGTATA 58.947 55.000 1.98 0.00 37.49 1.47
207 208 1.053424 TGGCCGATTGGAGGGTATAC 58.947 55.000 1.98 0.00 37.49 1.47
208 209 1.053424 GGCCGATTGGAGGGTATACA 58.947 55.000 1.98 0.00 37.49 2.29
209 210 1.628846 GGCCGATTGGAGGGTATACAT 59.371 52.381 1.98 0.00 37.49 2.29
210 211 2.354805 GGCCGATTGGAGGGTATACATC 60.355 54.545 1.98 2.10 37.49 3.06
211 212 2.674177 GCCGATTGGAGGGTATACATCG 60.674 54.545 1.98 9.25 37.49 3.84
212 213 2.607187 CGATTGGAGGGTATACATCGC 58.393 52.381 5.01 0.00 0.00 4.58
213 214 2.231478 CGATTGGAGGGTATACATCGCT 59.769 50.000 5.01 0.00 0.00 4.93
214 215 3.589988 GATTGGAGGGTATACATCGCTG 58.410 50.000 5.01 0.00 0.00 5.18
215 216 2.375014 TGGAGGGTATACATCGCTGA 57.625 50.000 5.01 0.00 0.00 4.26
216 217 2.889512 TGGAGGGTATACATCGCTGAT 58.110 47.619 5.01 0.00 0.00 2.90
217 218 2.826128 TGGAGGGTATACATCGCTGATC 59.174 50.000 5.01 0.00 0.00 2.92
218 219 2.166664 GGAGGGTATACATCGCTGATCC 59.833 54.545 5.01 0.00 0.00 3.36
219 220 2.166664 GAGGGTATACATCGCTGATCCC 59.833 54.545 5.01 0.00 0.00 3.85
220 221 2.180276 GGGTATACATCGCTGATCCCT 58.820 52.381 5.01 0.00 0.00 4.20
221 222 2.166664 GGGTATACATCGCTGATCCCTC 59.833 54.545 5.01 0.00 0.00 4.30
222 223 3.093057 GGTATACATCGCTGATCCCTCT 58.907 50.000 5.01 0.00 0.00 3.69
223 224 3.129638 GGTATACATCGCTGATCCCTCTC 59.870 52.174 5.01 0.00 0.00 3.20
224 225 1.239347 TACATCGCTGATCCCTCTCG 58.761 55.000 0.00 0.00 0.00 4.04
225 226 0.753479 ACATCGCTGATCCCTCTCGT 60.753 55.000 0.00 0.00 0.00 4.18
226 227 0.318529 CATCGCTGATCCCTCTCGTG 60.319 60.000 0.00 0.00 0.00 4.35
227 228 0.753479 ATCGCTGATCCCTCTCGTGT 60.753 55.000 0.00 0.00 0.00 4.49
228 229 0.965866 TCGCTGATCCCTCTCGTGTT 60.966 55.000 0.00 0.00 0.00 3.32
229 230 0.108615 CGCTGATCCCTCTCGTGTTT 60.109 55.000 0.00 0.00 0.00 2.83
230 231 1.646189 GCTGATCCCTCTCGTGTTTC 58.354 55.000 0.00 0.00 0.00 2.78
231 232 1.205893 GCTGATCCCTCTCGTGTTTCT 59.794 52.381 0.00 0.00 0.00 2.52
232 233 2.354203 GCTGATCCCTCTCGTGTTTCTT 60.354 50.000 0.00 0.00 0.00 2.52
233 234 3.866449 GCTGATCCCTCTCGTGTTTCTTT 60.866 47.826 0.00 0.00 0.00 2.52
234 235 3.926616 TGATCCCTCTCGTGTTTCTTTC 58.073 45.455 0.00 0.00 0.00 2.62
235 236 3.578716 TGATCCCTCTCGTGTTTCTTTCT 59.421 43.478 0.00 0.00 0.00 2.52
236 237 3.386768 TCCCTCTCGTGTTTCTTTCTG 57.613 47.619 0.00 0.00 0.00 3.02
237 238 2.698797 TCCCTCTCGTGTTTCTTTCTGT 59.301 45.455 0.00 0.00 0.00 3.41
238 239 3.134081 TCCCTCTCGTGTTTCTTTCTGTT 59.866 43.478 0.00 0.00 0.00 3.16
239 240 3.248602 CCCTCTCGTGTTTCTTTCTGTTG 59.751 47.826 0.00 0.00 0.00 3.33
240 241 3.871594 CCTCTCGTGTTTCTTTCTGTTGT 59.128 43.478 0.00 0.00 0.00 3.32
241 242 5.047847 CCTCTCGTGTTTCTTTCTGTTGTA 58.952 41.667 0.00 0.00 0.00 2.41
242 243 5.522460 CCTCTCGTGTTTCTTTCTGTTGTAA 59.478 40.000 0.00 0.00 0.00 2.41
243 244 6.340537 TCTCGTGTTTCTTTCTGTTGTAAC 57.659 37.500 0.00 0.00 0.00 2.50
244 245 5.870433 TCTCGTGTTTCTTTCTGTTGTAACA 59.130 36.000 0.00 0.00 37.37 2.41
259 260 5.975344 TGTTGTAACAGTACTAGCGATATGC 59.025 40.000 0.00 0.00 37.94 3.14
260 261 7.216361 TGTTGTAACAGTACTAGCGATATGCG 61.216 42.308 0.00 0.00 40.70 4.73
261 262 9.479338 TGTTGTAACAGTACTAGCGATATGCGT 62.479 40.741 0.00 0.00 40.70 5.24
285 286 6.452494 AGATGTTTCTACTATGTGCGTAGT 57.548 37.500 8.83 8.83 38.42 2.73
286 287 7.563888 AGATGTTTCTACTATGTGCGTAGTA 57.436 36.000 9.97 9.97 36.39 1.82
287 288 7.416022 AGATGTTTCTACTATGTGCGTAGTAC 58.584 38.462 7.08 0.00 45.46 2.73
296 297 2.279582 GTGCGTAGTACATGCTCTGT 57.720 50.000 0.38 0.00 44.35 3.41
297 298 2.607187 GTGCGTAGTACATGCTCTGTT 58.393 47.619 0.38 0.00 44.35 3.16
298 299 3.766151 GTGCGTAGTACATGCTCTGTTA 58.234 45.455 0.38 0.00 44.35 2.41
299 300 3.791887 GTGCGTAGTACATGCTCTGTTAG 59.208 47.826 0.38 0.00 44.35 2.34
300 301 3.692593 TGCGTAGTACATGCTCTGTTAGA 59.307 43.478 0.38 0.00 40.09 2.10
301 302 4.338400 TGCGTAGTACATGCTCTGTTAGAT 59.662 41.667 0.38 0.00 40.09 1.98
302 303 4.912766 GCGTAGTACATGCTCTGTTAGATC 59.087 45.833 0.38 0.00 39.39 2.75
303 304 5.140872 CGTAGTACATGCTCTGTTAGATCG 58.859 45.833 0.38 0.00 39.39 3.69
304 305 5.277393 CGTAGTACATGCTCTGTTAGATCGT 60.277 44.000 0.38 0.00 39.39 3.73
305 306 6.073927 CGTAGTACATGCTCTGTTAGATCGTA 60.074 42.308 0.38 0.00 39.39 3.43
306 307 6.694877 AGTACATGCTCTGTTAGATCGTAA 57.305 37.500 0.00 0.00 39.39 3.18
307 308 7.278461 AGTACATGCTCTGTTAGATCGTAAT 57.722 36.000 0.00 0.00 39.39 1.89
308 309 7.364200 AGTACATGCTCTGTTAGATCGTAATC 58.636 38.462 0.00 0.00 39.39 1.75
309 310 6.149129 ACATGCTCTGTTAGATCGTAATCA 57.851 37.500 0.00 0.00 32.90 2.57
310 311 6.212235 ACATGCTCTGTTAGATCGTAATCAG 58.788 40.000 0.00 0.00 32.90 2.90
311 312 5.836821 TGCTCTGTTAGATCGTAATCAGT 57.163 39.130 0.00 0.00 34.07 3.41
312 313 5.582550 TGCTCTGTTAGATCGTAATCAGTG 58.417 41.667 0.00 0.00 34.07 3.66
313 314 5.125578 TGCTCTGTTAGATCGTAATCAGTGT 59.874 40.000 0.00 0.00 34.07 3.55
314 315 5.457148 GCTCTGTTAGATCGTAATCAGTGTG 59.543 44.000 0.00 0.00 34.07 3.82
315 316 6.510879 TCTGTTAGATCGTAATCAGTGTGT 57.489 37.500 0.00 0.00 34.07 3.72
316 317 6.920817 TCTGTTAGATCGTAATCAGTGTGTT 58.079 36.000 0.00 0.00 34.07 3.32
317 318 8.047413 TCTGTTAGATCGTAATCAGTGTGTTA 57.953 34.615 0.00 0.00 34.07 2.41
318 319 8.683615 TCTGTTAGATCGTAATCAGTGTGTTAT 58.316 33.333 0.00 0.00 34.07 1.89
319 320 8.851960 TGTTAGATCGTAATCAGTGTGTTATC 57.148 34.615 0.00 0.00 34.07 1.75
320 321 8.463607 TGTTAGATCGTAATCAGTGTGTTATCA 58.536 33.333 0.00 0.00 34.07 2.15
321 322 9.297586 GTTAGATCGTAATCAGTGTGTTATCAA 57.702 33.333 0.00 0.00 34.07 2.57
323 324 8.357796 AGATCGTAATCAGTGTGTTATCAATG 57.642 34.615 0.00 0.00 34.07 2.82
324 325 7.981789 AGATCGTAATCAGTGTGTTATCAATGT 59.018 33.333 0.00 0.00 35.37 2.71
325 326 7.899178 TCGTAATCAGTGTGTTATCAATGTT 57.101 32.000 0.00 0.00 35.37 2.71
326 327 7.738345 TCGTAATCAGTGTGTTATCAATGTTG 58.262 34.615 0.00 0.00 35.37 3.33
327 328 7.386573 TCGTAATCAGTGTGTTATCAATGTTGT 59.613 33.333 0.00 0.00 35.37 3.32
328 329 8.015087 CGTAATCAGTGTGTTATCAATGTTGTT 58.985 33.333 0.00 0.00 35.37 2.83
329 330 9.329913 GTAATCAGTGTGTTATCAATGTTGTTC 57.670 33.333 0.00 0.00 35.37 3.18
330 331 6.934048 TCAGTGTGTTATCAATGTTGTTCA 57.066 33.333 0.00 0.00 35.37 3.18
331 332 7.509141 TCAGTGTGTTATCAATGTTGTTCAT 57.491 32.000 0.00 0.00 38.57 2.57
332 333 7.361894 TCAGTGTGTTATCAATGTTGTTCATG 58.638 34.615 0.00 0.00 36.81 3.07
333 334 7.013178 TCAGTGTGTTATCAATGTTGTTCATGT 59.987 33.333 0.00 0.00 36.81 3.21
334 335 7.324375 CAGTGTGTTATCAATGTTGTTCATGTC 59.676 37.037 0.00 0.00 36.81 3.06
335 336 7.013178 AGTGTGTTATCAATGTTGTTCATGTCA 59.987 33.333 0.00 0.00 36.81 3.58
336 337 7.809331 GTGTGTTATCAATGTTGTTCATGTCAT 59.191 33.333 0.00 0.00 36.81 3.06
337 338 7.808856 TGTGTTATCAATGTTGTTCATGTCATG 59.191 33.333 6.47 6.47 36.81 3.07
338 339 6.807720 TGTTATCAATGTTGTTCATGTCATGC 59.192 34.615 8.03 0.00 36.81 4.06
339 340 5.654603 ATCAATGTTGTTCATGTCATGCT 57.345 34.783 8.03 0.00 36.81 3.79
340 341 5.050644 TCAATGTTGTTCATGTCATGCTC 57.949 39.130 8.03 4.35 36.81 4.26
341 342 4.519730 TCAATGTTGTTCATGTCATGCTCA 59.480 37.500 8.03 6.78 36.81 4.26
342 343 5.184287 TCAATGTTGTTCATGTCATGCTCAT 59.816 36.000 8.03 5.40 36.81 2.90
343 344 4.428615 TGTTGTTCATGTCATGCTCATG 57.571 40.909 18.24 18.24 42.53 3.07
344 345 4.073549 TGTTGTTCATGTCATGCTCATGA 58.926 39.130 21.07 21.07 46.28 3.07
345 346 6.127451 AATGTTGTTCATGTCATGCTCATGAT 60.127 34.615 23.61 12.10 46.84 2.45
346 347 7.578763 AATGTTGTTCATGTCATGCTCATGATT 60.579 33.333 23.61 15.56 46.84 2.57
390 391 8.767478 ATTGAAAAACTGCCTATTTTCTCATG 57.233 30.769 14.85 0.00 42.95 3.07
454 455 3.117888 ACGAACAAGGAGCCCATCAATAT 60.118 43.478 0.00 0.00 0.00 1.28
462 463 5.763355 AGGAGCCCATCAATATCCATTATG 58.237 41.667 0.00 0.00 32.21 1.90
536 538 7.310609 CCTCCACCATGATATGATACACATGTA 60.311 40.741 0.00 0.00 39.77 2.29
567 2124 7.160726 CCCACACAATTTCATTTCCTTTGTAT 58.839 34.615 0.00 0.00 0.00 2.29
588 2145 0.674581 TTTCCTGTGCCTCGATGCAG 60.675 55.000 16.05 5.34 43.02 4.41
608 2165 2.047179 GCCTCCGCTTCCGAGTTT 60.047 61.111 0.00 0.00 36.29 2.66
609 2166 2.101233 GCCTCCGCTTCCGAGTTTC 61.101 63.158 0.00 0.00 36.29 2.78
868 4133 2.782222 GCTACATGGACGGCCTCGA 61.782 63.158 9.82 0.00 40.11 4.04
872 4137 1.143838 CATGGACGGCCTCGATCAA 59.856 57.895 9.82 0.00 40.11 2.57
985 4451 3.787001 CCCAAGTCGCTCCCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
1086 4552 3.827898 CGCACCCCCGTCTCTCTC 61.828 72.222 0.00 0.00 0.00 3.20
1087 4553 2.363147 GCACCCCCGTCTCTCTCT 60.363 66.667 0.00 0.00 0.00 3.10
1088 4554 2.419739 GCACCCCCGTCTCTCTCTC 61.420 68.421 0.00 0.00 0.00 3.20
1089 4555 1.304952 CACCCCCGTCTCTCTCTCT 59.695 63.158 0.00 0.00 0.00 3.10
1090 4556 0.750182 CACCCCCGTCTCTCTCTCTC 60.750 65.000 0.00 0.00 0.00 3.20
1091 4557 0.917333 ACCCCCGTCTCTCTCTCTCT 60.917 60.000 0.00 0.00 0.00 3.10
1092 4558 0.179029 CCCCCGTCTCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
1093 4559 0.837272 CCCCGTCTCTCTCTCTCTCT 59.163 60.000 0.00 0.00 0.00 3.10
1094 4560 1.202651 CCCCGTCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
1095 4561 1.762957 CCCGTCTCTCTCTCTCTCTCT 59.237 57.143 0.00 0.00 0.00 3.10
1096 4562 2.224066 CCCGTCTCTCTCTCTCTCTCTC 60.224 59.091 0.00 0.00 0.00 3.20
1097 4563 2.695666 CCGTCTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
1098 4564 3.243569 CCGTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
1099 4565 3.634448 CGTCTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
1100 4566 4.261405 CGTCTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
1101 4567 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
1102 4568 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
1103 4569 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1104 4570 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1105 4571 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1106 4572 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1107 4573 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1108 4574 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1109 4575 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1110 4576 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1111 4577 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1112 4578 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1113 4579 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1114 4580 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1155 4621 6.310941 TCTCGGAAGAAATCTGGAGAGATAT 58.689 40.000 7.47 0.00 41.32 1.63
1156 4622 7.462590 TCTCGGAAGAAATCTGGAGAGATATA 58.537 38.462 7.47 0.00 41.32 0.86
1157 4623 7.392113 TCTCGGAAGAAATCTGGAGAGATATAC 59.608 40.741 7.47 0.00 41.32 1.47
1158 4624 6.434652 TCGGAAGAAATCTGGAGAGATATACC 59.565 42.308 0.00 0.00 35.36 2.73
1159 4625 6.209589 CGGAAGAAATCTGGAGAGATATACCA 59.790 42.308 0.00 0.00 38.03 3.25
1201 4667 1.959042 ACTGTGTGCAAAGTGGAGAG 58.041 50.000 0.00 0.00 0.00 3.20
1219 4685 1.334243 GAGATACCTCACCTTCGGTCG 59.666 57.143 0.00 0.00 39.24 4.79
1225 4691 4.388499 CACCTTCGGTCGGGGTGG 62.388 72.222 19.84 8.49 44.63 4.61
1264 4734 3.057033 TCTCTAGTTCCGTGTGCTTAACC 60.057 47.826 0.00 0.00 0.00 2.85
1267 4737 2.218603 AGTTCCGTGTGCTTAACCTTG 58.781 47.619 0.00 0.00 0.00 3.61
1300 4774 0.105039 CAGGAGACATTAGGACGGCC 59.895 60.000 0.00 0.00 0.00 6.13
1386 4860 3.883489 GGTATATCCAAGGTGCTTGTTCC 59.117 47.826 0.00 0.00 39.58 3.62
1399 4879 0.817634 TTGTTCCGGTGCTCCTTGTG 60.818 55.000 0.00 0.00 0.00 3.33
1400 4880 1.227853 GTTCCGGTGCTCCTTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
1402 4882 0.534203 TTCCGGTGCTCCTTGTGTTC 60.534 55.000 0.00 0.00 0.00 3.18
1403 4883 1.966451 CCGGTGCTCCTTGTGTTCC 60.966 63.158 2.85 0.00 0.00 3.62
1404 4884 1.071471 CGGTGCTCCTTGTGTTCCT 59.929 57.895 2.85 0.00 0.00 3.36
1405 4885 0.535102 CGGTGCTCCTTGTGTTCCTT 60.535 55.000 2.85 0.00 0.00 3.36
1406 4886 1.692411 GGTGCTCCTTGTGTTCCTTT 58.308 50.000 0.00 0.00 0.00 3.11
1407 4887 2.031870 GGTGCTCCTTGTGTTCCTTTT 58.968 47.619 0.00 0.00 0.00 2.27
1408 4888 2.430694 GGTGCTCCTTGTGTTCCTTTTT 59.569 45.455 0.00 0.00 0.00 1.94
1409 4889 3.447742 GTGCTCCTTGTGTTCCTTTTTG 58.552 45.455 0.00 0.00 0.00 2.44
1410 4890 3.096092 TGCTCCTTGTGTTCCTTTTTGT 58.904 40.909 0.00 0.00 0.00 2.83
1411 4891 3.130340 TGCTCCTTGTGTTCCTTTTTGTC 59.870 43.478 0.00 0.00 0.00 3.18
1412 4892 3.381590 GCTCCTTGTGTTCCTTTTTGTCT 59.618 43.478 0.00 0.00 0.00 3.41
1413 4893 4.498177 GCTCCTTGTGTTCCTTTTTGTCTC 60.498 45.833 0.00 0.00 0.00 3.36
1414 4894 3.951680 TCCTTGTGTTCCTTTTTGTCTCC 59.048 43.478 0.00 0.00 0.00 3.71
1415 4895 3.954258 CCTTGTGTTCCTTTTTGTCTCCT 59.046 43.478 0.00 0.00 0.00 3.69
1416 4896 4.402474 CCTTGTGTTCCTTTTTGTCTCCTT 59.598 41.667 0.00 0.00 0.00 3.36
1417 4897 5.592688 CCTTGTGTTCCTTTTTGTCTCCTTA 59.407 40.000 0.00 0.00 0.00 2.69
1424 4904 7.391554 TGTTCCTTTTTGTCTCCTTATGATCTG 59.608 37.037 0.00 0.00 0.00 2.90
1450 4930 5.132897 AGGACTCAAGATCATCTAATCGC 57.867 43.478 0.00 0.00 0.00 4.58
1464 4944 6.754209 TCATCTAATCGCTTTCTCTCTGTTTC 59.246 38.462 0.00 0.00 0.00 2.78
1525 5006 5.476945 TGAGTAAAGCTCCCATTTTCCTTTC 59.523 40.000 0.00 0.00 43.48 2.62
1556 5038 5.066117 CCTTTTCTATTTCCTTACGCTTCCC 59.934 44.000 0.00 0.00 0.00 3.97
1557 5039 3.447918 TCTATTTCCTTACGCTTCCCG 57.552 47.619 0.00 0.00 44.21 5.14
1570 5052 2.829043 CTTCCCGTGTCGCCGATTCA 62.829 60.000 0.00 0.00 0.00 2.57
1578 5060 1.270094 TGTCGCCGATTCAAACAGAGT 60.270 47.619 0.00 0.00 0.00 3.24
1579 5061 1.798813 GTCGCCGATTCAAACAGAGTT 59.201 47.619 0.00 0.00 0.00 3.01
1580 5062 2.991190 GTCGCCGATTCAAACAGAGTTA 59.009 45.455 0.00 0.00 0.00 2.24
1607 5089 6.024552 TGCTTTACAAAATCCACTCCAATC 57.975 37.500 0.00 0.00 0.00 2.67
1644 5126 6.320171 TGTTGTCAAAAATTTGTTGCAATGG 58.680 32.000 0.59 0.00 39.18 3.16
1659 5141 3.141838 TGCAATGGGTGGGTGGAATATAT 59.858 43.478 0.00 0.00 0.00 0.86
1662 5144 5.360714 GCAATGGGTGGGTGGAATATATATG 59.639 44.000 0.00 0.00 0.00 1.78
1667 5149 6.103353 TGGGTGGGTGGAATATATATGAACAA 59.897 38.462 0.00 0.00 0.00 2.83
1686 5168 6.982141 TGAACAACAACTCATTACTCGTAGTT 59.018 34.615 0.00 0.00 32.52 2.24
1730 5434 6.816134 TTCAAAATCGAATCAATGGTCAGA 57.184 33.333 0.00 0.00 0.00 3.27
1740 5444 4.824479 TCAATGGTCAGACATCTGCTAA 57.176 40.909 2.17 0.00 43.46 3.09
1747 5451 5.244851 TGGTCAGACATCTGCTAATAGATCC 59.755 44.000 2.17 0.00 43.46 3.36
1749 5453 6.350110 GGTCAGACATCTGCTAATAGATCCTC 60.350 46.154 2.17 0.00 43.46 3.71
1762 5466 2.787994 AGATCCTCAAAAGTGCTGGTG 58.212 47.619 0.00 0.00 0.00 4.17
1763 5467 2.373169 AGATCCTCAAAAGTGCTGGTGA 59.627 45.455 0.00 0.00 0.00 4.02
1764 5468 2.957402 TCCTCAAAAGTGCTGGTGAT 57.043 45.000 0.00 0.00 0.00 3.06
1765 5469 3.228188 TCCTCAAAAGTGCTGGTGATT 57.772 42.857 0.00 0.00 0.00 2.57
1766 5470 2.886523 TCCTCAAAAGTGCTGGTGATTG 59.113 45.455 0.00 0.00 0.00 2.67
1768 5488 1.340889 TCAAAAGTGCTGGTGATTGGC 59.659 47.619 0.00 0.00 0.00 4.52
1772 5492 2.677524 TGCTGGTGATTGGCTGCC 60.678 61.111 12.87 12.87 0.00 4.85
1773 5493 2.677524 GCTGGTGATTGGCTGCCA 60.678 61.111 19.30 19.30 0.00 4.92
1787 5507 3.138283 TGGCTGCCAGGCTACTAAATTAT 59.862 43.478 19.30 0.00 41.96 1.28
1796 5516 4.415512 AGGCTACTAAATTATTCTGCCCCA 59.584 41.667 0.00 0.00 39.90 4.96
1879 5619 7.604657 TTTGACAAGCCTTTTAAATCCCTTA 57.395 32.000 0.00 0.00 0.00 2.69
1881 5621 8.887264 TTGACAAGCCTTTTAAATCCCTTATA 57.113 30.769 0.00 0.00 0.00 0.98
1901 5641 8.250332 CCTTATATGCTTATTCCTCAGAGTCTC 58.750 40.741 0.00 0.00 0.00 3.36
1945 5685 2.440980 GCCCAGCCCCATTGACTC 60.441 66.667 0.00 0.00 0.00 3.36
1957 5697 5.440610 CCCCATTGACTCTGCTAATAAGTT 58.559 41.667 0.00 0.00 0.00 2.66
1992 5732 1.338484 TGGCTGACAGTCTCATTGAGC 60.338 52.381 8.81 0.90 0.00 4.26
1993 5733 1.066286 GGCTGACAGTCTCATTGAGCT 60.066 52.381 8.89 6.77 0.00 4.09
1994 5734 2.001159 GCTGACAGTCTCATTGAGCTG 58.999 52.381 24.28 24.28 38.64 4.24
1995 5735 2.612471 GCTGACAGTCTCATTGAGCTGT 60.612 50.000 28.27 28.27 43.72 4.40
1996 5736 2.994578 CTGACAGTCTCATTGAGCTGTG 59.005 50.000 30.79 20.72 42.38 3.66
1997 5737 2.366590 TGACAGTCTCATTGAGCTGTGT 59.633 45.455 30.79 22.43 42.38 3.72
2012 5752 2.905075 CTGTGTCTGTGTGGTTCTGAA 58.095 47.619 0.00 0.00 0.00 3.02
2107 5847 2.631160 TCCTTGTTGCTTCTTTCCGA 57.369 45.000 0.00 0.00 0.00 4.55
2134 5874 5.371115 ACAGTATTTGACCACCATTTTCG 57.629 39.130 0.00 0.00 0.00 3.46
2185 5925 3.381590 TGTTCCGGACTGTGAGATGATAG 59.618 47.826 1.83 0.00 0.00 2.08
2221 5961 3.866910 GGATCACGTCCGTAATTTGCTTA 59.133 43.478 0.00 0.00 37.23 3.09
2256 5996 2.090400 CATCGGCTATGCTGCTACAT 57.910 50.000 0.00 0.00 34.49 2.29
2356 6098 1.888512 TGCTGATGCTCCTTGGTTTTC 59.111 47.619 0.00 0.00 40.48 2.29
2479 6227 5.875359 ACGCTCCCATTTTCTTTCTTACTAG 59.125 40.000 0.00 0.00 0.00 2.57
2480 6228 5.875359 CGCTCCCATTTTCTTTCTTACTAGT 59.125 40.000 0.00 0.00 0.00 2.57
2481 6229 7.039882 CGCTCCCATTTTCTTTCTTACTAGTA 58.960 38.462 0.00 0.00 0.00 1.82
2500 6248 8.928270 ACTAGTATTTTCTTCATACGTCCTTG 57.072 34.615 0.00 0.00 33.07 3.61
2537 6291 1.651138 CTCGAACAGAGTAGCGCTTTG 59.349 52.381 18.68 12.19 41.99 2.77
2569 6324 4.887071 ACTGCAATGTTTCACCAGTCTTAA 59.113 37.500 0.00 0.00 31.61 1.85
2571 6326 6.040842 ACTGCAATGTTTCACCAGTCTTAATT 59.959 34.615 0.00 0.00 31.61 1.40
2613 6369 5.903810 AGTGGGTGCAATAAAAACGTTAAA 58.096 33.333 0.00 0.00 0.00 1.52
2626 6382 5.596268 AAACGTTAAACCATTACTCGGTC 57.404 39.130 0.00 0.00 34.99 4.79
2627 6383 4.525912 ACGTTAAACCATTACTCGGTCT 57.474 40.909 0.00 0.00 34.99 3.85
2737 6541 2.346766 TGGTGCACTGTCTTCAATGT 57.653 45.000 17.98 0.00 0.00 2.71
2797 7300 3.996764 GCACTGGTTGAAACCTAAGTGGA 60.997 47.826 23.62 1.84 45.81 4.02
2829 7332 9.760660 CTATGCACAAATTTCTACAAACTAGTC 57.239 33.333 0.00 0.00 0.00 2.59
2908 7574 7.865706 ATGACTAATTCATGGTTTAGACACC 57.134 36.000 17.26 0.00 43.87 4.16
3037 7705 0.032678 CTATTGACGATCGCCTGGCT 59.967 55.000 16.60 0.00 0.00 4.75
3094 7762 0.602638 TAGTTGTGGGAAGTGCTGCG 60.603 55.000 0.00 0.00 0.00 5.18
3161 9609 2.479656 GCTCTCTTGTTGCTTCTGTCTG 59.520 50.000 0.00 0.00 0.00 3.51
3162 9610 3.726607 CTCTCTTGTTGCTTCTGTCTGT 58.273 45.455 0.00 0.00 0.00 3.41
3181 9633 4.929211 TCTGTTGAACAGTATTGATCACCG 59.071 41.667 23.17 0.00 46.03 4.94
3368 9820 1.460699 GGGTGGGAAGGTGAGCTTT 59.539 57.895 0.00 0.00 0.00 3.51
3399 9851 6.957631 TGTCCTTCCTTATTTCTCTAATGCA 58.042 36.000 0.00 0.00 0.00 3.96
3572 10041 6.671614 AATGCTTTATTGCCAATGATTGTG 57.328 33.333 4.27 0.00 0.00 3.33
3582 10071 3.315191 GCCAATGATTGTGCCGTACTATT 59.685 43.478 4.27 0.00 0.00 1.73
3611 10100 7.972527 TGACATTTGAAAACCTCAATTTGTTG 58.027 30.769 0.00 0.00 43.64 3.33
3675 10172 7.148639 CCATGTTTCTTTCATTGATGAAGCAAG 60.149 37.037 16.78 13.96 46.34 4.01
3738 10235 2.344950 CTCTTCGCTTGCATGAAGTCT 58.655 47.619 17.98 0.00 41.77 3.24
3751 10248 9.499585 CTTGCATGAAGTCTAATTATGTGAAAG 57.500 33.333 0.00 0.00 0.00 2.62
3823 10320 2.612212 CCGGCATTGACGCTAAGTATTT 59.388 45.455 6.33 0.00 29.68 1.40
3946 10445 6.122850 TGTGTTTTGAGTATGCATATGCTC 57.877 37.500 27.13 16.90 43.75 4.26
3984 10492 3.245990 GCAATGGACTGAAGTGTTTTTGC 59.754 43.478 0.00 0.00 0.00 3.68
4000 10508 8.250332 AGTGTTTTTGCTTCAGATTTTCTTACA 58.750 29.630 0.00 0.00 0.00 2.41
4035 10543 6.586344 TCAAAGATAGTGGATCATTCACCTC 58.414 40.000 0.00 0.00 36.98 3.85
4089 10597 6.043243 TGTCCTTTCTCTCTACAATGAGGTTT 59.957 38.462 0.00 0.00 34.98 3.27
4178 10686 7.752686 GCAAAGATGAAGGCTAAGTTAGAAAAG 59.247 37.037 14.27 0.00 0.00 2.27
4190 10698 4.254492 AGTTAGAAAAGCATCCTTCCGTC 58.746 43.478 0.00 0.00 0.00 4.79
4219 12346 1.140816 AACGAGAGCAAGTCGAAAGC 58.859 50.000 9.08 0.00 39.92 3.51
4252 12379 0.251077 ACTGGAAAGCTTGAGGCAGG 60.251 55.000 0.00 0.00 44.79 4.85
4354 12484 0.109551 CGTCATGACAGCGTCAGACT 60.110 55.000 24.93 7.83 46.04 3.24
4367 12497 3.430098 GCGTCAGACTCTTGGAAGATGAT 60.430 47.826 0.00 0.00 33.93 2.45
4405 12541 6.181908 TCATTGATGTGACAATTGATCCTGA 58.818 36.000 13.59 7.57 38.25 3.86
4431 12567 2.829741 AGAAGCACCAGACTTGACTC 57.170 50.000 0.00 0.00 0.00 3.36
4443 12579 4.689812 CAGACTTGACTCTGGTGATGAAAG 59.310 45.833 0.00 0.00 35.00 2.62
4532 12668 1.692411 AAACTGGTGAGGAAGCCAAC 58.308 50.000 0.00 0.00 33.93 3.77
4537 12673 0.178990 GGTGAGGAAGCCAACAAGGT 60.179 55.000 0.00 0.00 40.61 3.50
4538 12674 1.239347 GTGAGGAAGCCAACAAGGTC 58.761 55.000 0.00 0.00 40.61 3.85
4549 12685 3.305335 GCCAACAAGGTCGTTCAATTGAT 60.305 43.478 9.40 0.00 40.61 2.57
4553 12689 5.108385 ACAAGGTCGTTCAATTGATTCAC 57.892 39.130 9.40 3.79 0.00 3.18
4581 12717 6.820656 ACTAGTAGATGTGCTGATGGAAAAAG 59.179 38.462 3.59 0.00 0.00 2.27
4582 12718 3.863142 AGATGTGCTGATGGAAAAAGC 57.137 42.857 0.00 0.00 37.46 3.51
4597 12733 5.884792 TGGAAAAAGCAAATGAAAATGGTGT 59.115 32.000 0.00 0.00 0.00 4.16
4635 12771 1.313772 TCATCTCGAGGCTCAGCTAC 58.686 55.000 15.95 0.00 0.00 3.58
4670 12806 2.284798 CTAGCGAGGAAGCGAAGGCA 62.285 60.000 0.00 0.00 43.41 4.75
4706 12843 5.277857 ACTGGAGGATAAACCATTAGACG 57.722 43.478 0.00 0.00 42.04 4.18
4708 12845 3.389983 TGGAGGATAAACCATTAGACGGG 59.610 47.826 0.00 0.00 42.04 5.28
4731 12868 2.045926 GGCTGTGGCGACTGGAAT 60.046 61.111 7.79 0.00 39.81 3.01
4732 12869 1.220749 GGCTGTGGCGACTGGAATA 59.779 57.895 7.79 0.00 39.81 1.75
4733 12870 0.811616 GGCTGTGGCGACTGGAATAG 60.812 60.000 7.79 0.00 39.81 1.73
4734 12871 0.175760 GCTGTGGCGACTGGAATAGA 59.824 55.000 7.79 0.00 0.00 1.98
4735 12872 1.405526 GCTGTGGCGACTGGAATAGAA 60.406 52.381 7.79 0.00 0.00 2.10
4736 12873 2.935238 GCTGTGGCGACTGGAATAGAAA 60.935 50.000 7.79 0.00 0.00 2.52
4737 12874 2.673368 CTGTGGCGACTGGAATAGAAAC 59.327 50.000 0.00 0.00 0.00 2.78
4738 12875 2.301870 TGTGGCGACTGGAATAGAAACT 59.698 45.455 0.00 0.00 0.00 2.66
4739 12876 2.673368 GTGGCGACTGGAATAGAAACTG 59.327 50.000 0.00 0.00 0.00 3.16
4740 12877 2.565391 TGGCGACTGGAATAGAAACTGA 59.435 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.833049 CTAATCGCCCCTCTCCCGT 60.833 63.158 0.00 0.00 0.00 5.28
3 4 1.054978 AACCTAATCGCCCCTCTCCC 61.055 60.000 0.00 0.00 0.00 4.30
4 5 0.837940 AAACCTAATCGCCCCTCTCC 59.162 55.000 0.00 0.00 0.00 3.71
5 6 2.683362 CAAAAACCTAATCGCCCCTCTC 59.317 50.000 0.00 0.00 0.00 3.20
6 7 2.620627 CCAAAAACCTAATCGCCCCTCT 60.621 50.000 0.00 0.00 0.00 3.69
7 8 1.749063 CCAAAAACCTAATCGCCCCTC 59.251 52.381 0.00 0.00 0.00 4.30
10 11 1.552578 ACCCAAAAACCTAATCGCCC 58.447 50.000 0.00 0.00 0.00 6.13
11 12 2.098607 GCTACCCAAAAACCTAATCGCC 59.901 50.000 0.00 0.00 0.00 5.54
12 13 2.223180 CGCTACCCAAAAACCTAATCGC 60.223 50.000 0.00 0.00 0.00 4.58
13 14 3.063045 GTCGCTACCCAAAAACCTAATCG 59.937 47.826 0.00 0.00 0.00 3.34
14 15 4.259356 AGTCGCTACCCAAAAACCTAATC 58.741 43.478 0.00 0.00 0.00 1.75
15 16 4.296621 AGTCGCTACCCAAAAACCTAAT 57.703 40.909 0.00 0.00 0.00 1.73
16 17 3.775261 AGTCGCTACCCAAAAACCTAA 57.225 42.857 0.00 0.00 0.00 2.69
17 18 3.367292 CGTAGTCGCTACCCAAAAACCTA 60.367 47.826 10.20 0.00 33.79 3.08
18 19 2.611224 CGTAGTCGCTACCCAAAAACCT 60.611 50.000 10.20 0.00 33.79 3.50
19 20 1.728425 CGTAGTCGCTACCCAAAAACC 59.272 52.381 10.20 0.00 33.79 3.27
32 33 2.645014 CGAGCAGTCGCGTAGTCG 60.645 66.667 5.77 5.37 45.49 4.18
41 42 1.658095 GATGAACAGAAGCGAGCAGTC 59.342 52.381 0.00 0.00 0.00 3.51
42 43 1.274728 AGATGAACAGAAGCGAGCAGT 59.725 47.619 0.00 0.00 0.00 4.40
43 44 2.007360 AGATGAACAGAAGCGAGCAG 57.993 50.000 0.00 0.00 0.00 4.24
44 45 2.732282 CGTAGATGAACAGAAGCGAGCA 60.732 50.000 0.00 0.00 0.00 4.26
45 46 1.849219 CGTAGATGAACAGAAGCGAGC 59.151 52.381 0.00 0.00 0.00 5.03
46 47 3.102276 GACGTAGATGAACAGAAGCGAG 58.898 50.000 0.00 0.00 0.00 5.03
47 48 2.159421 GGACGTAGATGAACAGAAGCGA 60.159 50.000 0.00 0.00 0.00 4.93
48 49 2.186076 GGACGTAGATGAACAGAAGCG 58.814 52.381 0.00 0.00 0.00 4.68
49 50 2.186076 CGGACGTAGATGAACAGAAGC 58.814 52.381 0.00 0.00 0.00 3.86
50 51 2.186076 GCGGACGTAGATGAACAGAAG 58.814 52.381 0.00 0.00 0.00 2.85
51 52 1.542472 TGCGGACGTAGATGAACAGAA 59.458 47.619 0.00 0.00 0.00 3.02
52 53 1.170442 TGCGGACGTAGATGAACAGA 58.830 50.000 0.00 0.00 0.00 3.41
53 54 2.120232 GATGCGGACGTAGATGAACAG 58.880 52.381 0.00 0.00 0.00 3.16
54 55 1.474879 TGATGCGGACGTAGATGAACA 59.525 47.619 0.00 0.00 0.00 3.18
55 56 1.852895 GTGATGCGGACGTAGATGAAC 59.147 52.381 0.00 0.00 0.00 3.18
56 57 1.202371 GGTGATGCGGACGTAGATGAA 60.202 52.381 0.00 0.00 0.00 2.57
57 58 0.384309 GGTGATGCGGACGTAGATGA 59.616 55.000 0.00 0.00 0.00 2.92
58 59 0.385751 AGGTGATGCGGACGTAGATG 59.614 55.000 0.00 0.00 0.00 2.90
59 60 1.067212 GAAGGTGATGCGGACGTAGAT 59.933 52.381 0.00 0.00 0.00 1.98
60 61 0.454600 GAAGGTGATGCGGACGTAGA 59.545 55.000 0.00 0.00 0.00 2.59
61 62 0.866061 CGAAGGTGATGCGGACGTAG 60.866 60.000 0.00 0.00 0.00 3.51
62 63 1.138036 CGAAGGTGATGCGGACGTA 59.862 57.895 0.00 0.00 0.00 3.57
63 64 2.126071 CGAAGGTGATGCGGACGT 60.126 61.111 0.00 0.00 0.00 4.34
64 65 2.126071 ACGAAGGTGATGCGGACG 60.126 61.111 0.00 0.00 0.00 4.79
65 66 0.460284 ATGACGAAGGTGATGCGGAC 60.460 55.000 0.00 0.00 0.00 4.79
66 67 0.179111 GATGACGAAGGTGATGCGGA 60.179 55.000 0.00 0.00 0.00 5.54
67 68 0.460109 TGATGACGAAGGTGATGCGG 60.460 55.000 0.00 0.00 0.00 5.69
68 69 0.647410 GTGATGACGAAGGTGATGCG 59.353 55.000 0.00 0.00 0.00 4.73
69 70 1.009829 GGTGATGACGAAGGTGATGC 58.990 55.000 0.00 0.00 0.00 3.91
70 71 2.385013 TGGTGATGACGAAGGTGATG 57.615 50.000 0.00 0.00 0.00 3.07
71 72 2.237143 ACATGGTGATGACGAAGGTGAT 59.763 45.455 0.00 0.00 33.36 3.06
72 73 1.623311 ACATGGTGATGACGAAGGTGA 59.377 47.619 0.00 0.00 33.36 4.02
73 74 2.002586 GACATGGTGATGACGAAGGTG 58.997 52.381 0.00 0.00 33.36 4.00
74 75 1.404181 CGACATGGTGATGACGAAGGT 60.404 52.381 0.00 0.00 46.47 3.50
75 76 1.280982 CGACATGGTGATGACGAAGG 58.719 55.000 0.00 0.00 46.47 3.46
79 80 1.139816 CGGTCGACATGGTGATGACG 61.140 60.000 18.91 3.45 45.41 4.35
80 81 0.172578 TCGGTCGACATGGTGATGAC 59.827 55.000 18.91 0.00 33.36 3.06
81 82 0.172578 GTCGGTCGACATGGTGATGA 59.827 55.000 18.91 0.00 44.02 2.92
82 83 1.139816 CGTCGGTCGACATGGTGATG 61.140 60.000 18.91 8.13 44.77 3.07
83 84 1.138883 CGTCGGTCGACATGGTGAT 59.861 57.895 18.91 0.00 44.77 3.06
84 85 2.564458 CGTCGGTCGACATGGTGA 59.436 61.111 18.91 3.81 44.77 4.02
85 86 3.179265 GCGTCGGTCGACATGGTG 61.179 66.667 18.91 3.82 44.77 4.17
108 109 3.123620 CCTTCTCAGCAGCGGCAC 61.124 66.667 12.44 0.00 44.61 5.01
112 113 4.441695 TCGGCCTTCTCAGCAGCG 62.442 66.667 0.00 0.00 0.00 5.18
113 114 2.511145 CTCGGCCTTCTCAGCAGC 60.511 66.667 0.00 0.00 0.00 5.25
114 115 2.186384 CCTCGGCCTTCTCAGCAG 59.814 66.667 0.00 0.00 0.00 4.24
115 116 4.087892 GCCTCGGCCTTCTCAGCA 62.088 66.667 0.00 0.00 34.56 4.41
125 126 2.335712 CCTTCTTGTTGGCCTCGGC 61.336 63.158 3.32 0.00 41.06 5.54
126 127 2.335712 GCCTTCTTGTTGGCCTCGG 61.336 63.158 3.32 0.00 43.11 4.63
127 128 3.267974 GCCTTCTTGTTGGCCTCG 58.732 61.111 3.32 0.00 43.11 4.63
132 133 3.737172 CGGCGGCCTTCTTGTTGG 61.737 66.667 18.34 0.00 0.00 3.77
133 134 2.668212 TCGGCGGCCTTCTTGTTG 60.668 61.111 18.34 0.00 0.00 3.33
134 135 2.358737 CTCGGCGGCCTTCTTGTT 60.359 61.111 18.34 0.00 0.00 2.83
135 136 4.394712 CCTCGGCGGCCTTCTTGT 62.395 66.667 18.34 0.00 0.00 3.16
136 137 3.391665 ATCCTCGGCGGCCTTCTTG 62.392 63.158 18.34 0.39 0.00 3.02
137 138 3.083997 ATCCTCGGCGGCCTTCTT 61.084 61.111 18.34 0.00 0.00 2.52
138 139 3.854669 CATCCTCGGCGGCCTTCT 61.855 66.667 18.34 0.00 0.00 2.85
161 162 3.431725 GGTAACGGTGGCAGCAGC 61.432 66.667 17.80 3.15 41.10 5.25
186 187 2.040009 ATACCCTCCAATCGGCCACG 62.040 60.000 2.24 0.00 42.74 4.94
187 188 1.053424 TATACCCTCCAATCGGCCAC 58.947 55.000 2.24 0.00 0.00 5.01
188 189 1.053424 GTATACCCTCCAATCGGCCA 58.947 55.000 2.24 0.00 0.00 5.36
189 190 1.053424 TGTATACCCTCCAATCGGCC 58.947 55.000 0.00 0.00 0.00 6.13
190 191 2.674177 CGATGTATACCCTCCAATCGGC 60.674 54.545 11.28 0.00 0.00 5.54
191 192 2.674177 GCGATGTATACCCTCCAATCGG 60.674 54.545 17.54 5.30 0.00 4.18
192 193 2.231478 AGCGATGTATACCCTCCAATCG 59.769 50.000 13.69 13.69 0.00 3.34
193 194 3.258372 TCAGCGATGTATACCCTCCAATC 59.742 47.826 0.00 0.00 0.00 2.67
194 195 3.239449 TCAGCGATGTATACCCTCCAAT 58.761 45.455 0.00 0.00 0.00 3.16
195 196 2.673258 TCAGCGATGTATACCCTCCAA 58.327 47.619 0.00 0.00 0.00 3.53
196 197 2.375014 TCAGCGATGTATACCCTCCA 57.625 50.000 0.00 0.00 0.00 3.86
197 198 2.166664 GGATCAGCGATGTATACCCTCC 59.833 54.545 0.00 0.00 0.00 4.30
198 199 2.166664 GGGATCAGCGATGTATACCCTC 59.833 54.545 15.43 0.00 33.99 4.30
199 200 2.180276 GGGATCAGCGATGTATACCCT 58.820 52.381 15.43 0.00 33.99 4.34
200 201 2.166664 GAGGGATCAGCGATGTATACCC 59.833 54.545 15.10 15.10 36.67 3.69
201 202 3.093057 AGAGGGATCAGCGATGTATACC 58.907 50.000 0.00 3.36 0.00 2.73
202 203 3.181505 CGAGAGGGATCAGCGATGTATAC 60.182 52.174 0.00 0.00 0.00 1.47
203 204 3.010420 CGAGAGGGATCAGCGATGTATA 58.990 50.000 0.00 0.00 0.00 1.47
204 205 1.815613 CGAGAGGGATCAGCGATGTAT 59.184 52.381 0.00 0.00 0.00 2.29
205 206 1.239347 CGAGAGGGATCAGCGATGTA 58.761 55.000 0.00 0.00 0.00 2.29
206 207 0.753479 ACGAGAGGGATCAGCGATGT 60.753 55.000 0.00 0.00 0.00 3.06
207 208 0.318529 CACGAGAGGGATCAGCGATG 60.319 60.000 0.00 0.00 35.60 3.84
208 209 0.753479 ACACGAGAGGGATCAGCGAT 60.753 55.000 0.00 0.00 38.45 4.58
209 210 0.965866 AACACGAGAGGGATCAGCGA 60.966 55.000 0.00 0.00 38.45 4.93
210 211 0.108615 AAACACGAGAGGGATCAGCG 60.109 55.000 0.00 0.00 38.45 5.18
211 212 1.205893 AGAAACACGAGAGGGATCAGC 59.794 52.381 0.00 0.00 38.45 4.26
212 213 3.601443 AAGAAACACGAGAGGGATCAG 57.399 47.619 0.00 0.00 38.45 2.90
213 214 3.578716 AGAAAGAAACACGAGAGGGATCA 59.421 43.478 0.00 0.00 38.45 2.92
214 215 3.929610 CAGAAAGAAACACGAGAGGGATC 59.070 47.826 0.00 0.00 38.45 3.36
215 216 3.325135 ACAGAAAGAAACACGAGAGGGAT 59.675 43.478 0.00 0.00 38.45 3.85
216 217 2.698797 ACAGAAAGAAACACGAGAGGGA 59.301 45.455 0.00 0.00 38.45 4.20
217 218 3.113260 ACAGAAAGAAACACGAGAGGG 57.887 47.619 0.00 0.00 43.28 4.30
218 219 3.871594 ACAACAGAAAGAAACACGAGAGG 59.128 43.478 0.00 0.00 0.00 3.69
219 220 6.035650 TGTTACAACAGAAAGAAACACGAGAG 59.964 38.462 0.00 0.00 34.30 3.20
220 221 5.870433 TGTTACAACAGAAAGAAACACGAGA 59.130 36.000 0.00 0.00 34.30 4.04
221 222 6.102006 TGTTACAACAGAAAGAAACACGAG 57.898 37.500 0.00 0.00 34.30 4.18
235 236 5.975344 GCATATCGCTAGTACTGTTACAACA 59.025 40.000 5.39 0.00 37.77 3.33
236 237 5.115171 CGCATATCGCTAGTACTGTTACAAC 59.885 44.000 5.39 0.00 39.08 3.32
237 238 5.209977 CGCATATCGCTAGTACTGTTACAA 58.790 41.667 5.39 0.00 39.08 2.41
238 239 4.274214 ACGCATATCGCTAGTACTGTTACA 59.726 41.667 5.39 0.00 43.23 2.41
239 240 4.781071 ACGCATATCGCTAGTACTGTTAC 58.219 43.478 5.39 0.00 43.23 2.50
240 241 5.928264 TCTACGCATATCGCTAGTACTGTTA 59.072 40.000 5.39 0.00 43.23 2.41
241 242 3.984508 ACGCATATCGCTAGTACTGTT 57.015 42.857 5.39 0.00 43.23 3.16
242 243 4.313282 TCTACGCATATCGCTAGTACTGT 58.687 43.478 5.39 0.00 43.23 3.55
243 244 4.923264 TCTACGCATATCGCTAGTACTG 57.077 45.455 5.39 0.00 43.23 2.74
244 245 4.936411 ACATCTACGCATATCGCTAGTACT 59.064 41.667 0.00 0.00 43.23 2.73
245 246 5.219226 ACATCTACGCATATCGCTAGTAC 57.781 43.478 0.00 0.00 43.23 2.73
246 247 5.874895 AACATCTACGCATATCGCTAGTA 57.125 39.130 0.00 0.00 43.23 1.82
247 248 4.768130 AACATCTACGCATATCGCTAGT 57.232 40.909 0.00 0.00 43.23 2.57
248 249 5.394802 AGAAACATCTACGCATATCGCTAG 58.605 41.667 0.00 0.00 43.23 3.42
249 250 5.372547 AGAAACATCTACGCATATCGCTA 57.627 39.130 0.00 0.00 43.23 4.26
250 251 4.244425 AGAAACATCTACGCATATCGCT 57.756 40.909 0.00 0.00 43.23 4.93
251 252 5.154932 AGTAGAAACATCTACGCATATCGC 58.845 41.667 9.62 0.00 45.23 4.58
252 253 7.963465 ACATAGTAGAAACATCTACGCATATCG 59.037 37.037 9.62 0.00 45.23 2.92
253 254 9.066939 CACATAGTAGAAACATCTACGCATATC 57.933 37.037 9.62 0.00 45.23 1.63
254 255 7.542477 GCACATAGTAGAAACATCTACGCATAT 59.458 37.037 9.62 1.92 45.23 1.78
255 256 6.861572 GCACATAGTAGAAACATCTACGCATA 59.138 38.462 9.62 0.00 45.23 3.14
256 257 5.692204 GCACATAGTAGAAACATCTACGCAT 59.308 40.000 9.62 5.67 45.23 4.73
257 258 5.041287 GCACATAGTAGAAACATCTACGCA 58.959 41.667 9.62 3.90 45.23 5.24
258 259 4.146616 CGCACATAGTAGAAACATCTACGC 59.853 45.833 9.62 6.57 45.23 4.42
259 260 5.271625 ACGCACATAGTAGAAACATCTACG 58.728 41.667 9.62 0.87 45.23 3.51
260 261 7.416022 ACTACGCACATAGTAGAAACATCTAC 58.584 38.462 9.96 7.72 43.00 2.59
261 262 7.563888 ACTACGCACATAGTAGAAACATCTA 57.436 36.000 9.96 0.00 43.00 1.98
262 263 6.452494 ACTACGCACATAGTAGAAACATCT 57.548 37.500 9.96 0.00 43.00 2.90
263 264 7.191551 TGTACTACGCACATAGTAGAAACATC 58.808 38.462 9.96 0.00 43.00 3.06
264 265 7.092137 TGTACTACGCACATAGTAGAAACAT 57.908 36.000 9.96 0.00 43.00 2.71
265 266 6.499234 TGTACTACGCACATAGTAGAAACA 57.501 37.500 9.96 10.01 43.00 2.83
266 267 6.074994 GCATGTACTACGCACATAGTAGAAAC 60.075 42.308 9.96 8.02 43.00 2.78
267 268 5.975344 GCATGTACTACGCACATAGTAGAAA 59.025 40.000 9.96 0.00 43.00 2.52
268 269 5.298527 AGCATGTACTACGCACATAGTAGAA 59.701 40.000 9.96 0.00 43.00 2.10
269 270 4.820173 AGCATGTACTACGCACATAGTAGA 59.180 41.667 9.96 1.91 43.00 2.59
270 271 5.049336 AGAGCATGTACTACGCACATAGTAG 60.049 44.000 0.00 2.25 45.11 2.57
271 272 4.820173 AGAGCATGTACTACGCACATAGTA 59.180 41.667 0.00 0.00 36.74 1.82
272 273 3.632604 AGAGCATGTACTACGCACATAGT 59.367 43.478 0.00 0.00 38.89 2.12
273 274 3.977579 CAGAGCATGTACTACGCACATAG 59.022 47.826 0.00 0.00 34.88 2.23
274 275 3.380320 ACAGAGCATGTACTACGCACATA 59.620 43.478 0.00 0.00 41.60 2.29
275 276 2.166459 ACAGAGCATGTACTACGCACAT 59.834 45.455 0.00 0.00 41.60 3.21
276 277 1.544246 ACAGAGCATGTACTACGCACA 59.456 47.619 0.00 0.00 41.60 4.57
277 278 2.279582 ACAGAGCATGTACTACGCAC 57.720 50.000 0.00 0.00 41.60 5.34
278 279 3.692593 TCTAACAGAGCATGTACTACGCA 59.307 43.478 0.00 0.00 43.00 5.24
279 280 4.288670 TCTAACAGAGCATGTACTACGC 57.711 45.455 0.00 0.00 43.00 4.42
280 281 5.140872 CGATCTAACAGAGCATGTACTACG 58.859 45.833 0.00 0.00 43.00 3.51
281 282 6.062434 ACGATCTAACAGAGCATGTACTAC 57.938 41.667 0.00 0.00 43.00 2.73
282 283 7.797038 TTACGATCTAACAGAGCATGTACTA 57.203 36.000 0.00 0.00 43.00 1.82
283 284 6.694877 TTACGATCTAACAGAGCATGTACT 57.305 37.500 0.00 0.00 43.00 2.73
284 285 7.139392 TGATTACGATCTAACAGAGCATGTAC 58.861 38.462 0.00 0.00 35.62 2.90
285 286 7.013369 ACTGATTACGATCTAACAGAGCATGTA 59.987 37.037 0.00 0.00 35.62 2.29
286 287 6.149129 TGATTACGATCTAACAGAGCATGT 57.851 37.500 0.00 0.00 37.13 3.21
287 288 6.143598 CACTGATTACGATCTAACAGAGCATG 59.856 42.308 0.00 0.00 27.99 4.06
288 289 6.183360 ACACTGATTACGATCTAACAGAGCAT 60.183 38.462 0.00 0.00 27.99 3.79
289 290 5.125578 ACACTGATTACGATCTAACAGAGCA 59.874 40.000 0.00 0.00 27.99 4.26
290 291 5.457148 CACACTGATTACGATCTAACAGAGC 59.543 44.000 0.00 0.00 33.28 4.09
291 292 6.556212 ACACACTGATTACGATCTAACAGAG 58.444 40.000 0.00 0.00 33.28 3.35
292 293 6.510879 ACACACTGATTACGATCTAACAGA 57.489 37.500 0.00 0.00 33.28 3.41
293 294 8.858003 ATAACACACTGATTACGATCTAACAG 57.142 34.615 0.00 0.00 33.28 3.16
294 295 8.463607 TGATAACACACTGATTACGATCTAACA 58.536 33.333 0.00 0.00 33.28 2.41
295 296 8.851960 TGATAACACACTGATTACGATCTAAC 57.148 34.615 0.00 0.00 33.28 2.34
297 298 9.463443 CATTGATAACACACTGATTACGATCTA 57.537 33.333 0.00 0.00 33.28 1.98
298 299 7.981789 ACATTGATAACACACTGATTACGATCT 59.018 33.333 0.00 0.00 33.28 2.75
299 300 8.131455 ACATTGATAACACACTGATTACGATC 57.869 34.615 0.00 0.00 0.00 3.69
300 301 8.390354 CAACATTGATAACACACTGATTACGAT 58.610 33.333 0.00 0.00 0.00 3.73
301 302 7.386573 ACAACATTGATAACACACTGATTACGA 59.613 33.333 0.00 0.00 0.00 3.43
302 303 7.518161 ACAACATTGATAACACACTGATTACG 58.482 34.615 0.00 0.00 0.00 3.18
303 304 9.329913 GAACAACATTGATAACACACTGATTAC 57.670 33.333 0.00 0.00 0.00 1.89
304 305 9.061435 TGAACAACATTGATAACACACTGATTA 57.939 29.630 0.00 0.00 0.00 1.75
305 306 7.939782 TGAACAACATTGATAACACACTGATT 58.060 30.769 0.00 0.00 0.00 2.57
306 307 7.509141 TGAACAACATTGATAACACACTGAT 57.491 32.000 0.00 0.00 0.00 2.90
307 308 6.934048 TGAACAACATTGATAACACACTGA 57.066 33.333 0.00 0.00 0.00 3.41
308 309 7.140705 ACATGAACAACATTGATAACACACTG 58.859 34.615 0.00 0.00 37.07 3.66
309 310 7.013178 TGACATGAACAACATTGATAACACACT 59.987 33.333 0.00 0.00 37.07 3.55
310 311 7.138081 TGACATGAACAACATTGATAACACAC 58.862 34.615 0.00 0.00 37.07 3.82
311 312 7.269477 TGACATGAACAACATTGATAACACA 57.731 32.000 0.00 0.00 37.07 3.72
312 313 7.201376 GCATGACATGAACAACATTGATAACAC 60.201 37.037 19.76 0.00 37.07 3.32
313 314 6.807720 GCATGACATGAACAACATTGATAACA 59.192 34.615 19.76 0.00 37.07 2.41
314 315 7.031372 AGCATGACATGAACAACATTGATAAC 58.969 34.615 19.76 0.00 37.07 1.89
315 316 7.094291 TGAGCATGACATGAACAACATTGATAA 60.094 33.333 19.76 0.00 37.07 1.75
316 317 6.374894 TGAGCATGACATGAACAACATTGATA 59.625 34.615 19.76 0.00 37.07 2.15
317 318 5.184287 TGAGCATGACATGAACAACATTGAT 59.816 36.000 19.76 0.00 37.07 2.57
318 319 4.519730 TGAGCATGACATGAACAACATTGA 59.480 37.500 19.76 0.00 37.07 2.57
319 320 4.800784 TGAGCATGACATGAACAACATTG 58.199 39.130 19.76 0.00 37.07 2.82
320 321 5.184287 TCATGAGCATGACATGAACAACATT 59.816 36.000 23.77 0.90 42.42 2.71
321 322 4.703093 TCATGAGCATGACATGAACAACAT 59.297 37.500 23.77 11.96 42.42 2.71
322 323 4.073549 TCATGAGCATGACATGAACAACA 58.926 39.130 23.77 10.38 42.42 3.33
323 324 4.690184 TCATGAGCATGACATGAACAAC 57.310 40.909 23.77 0.77 42.42 3.32
364 365 9.211485 CATGAGAAAATAGGCAGTTTTTCAATT 57.789 29.630 16.54 2.72 41.89 2.32
365 366 8.587608 TCATGAGAAAATAGGCAGTTTTTCAAT 58.412 29.630 16.54 9.96 41.89 2.57
366 367 7.950512 TCATGAGAAAATAGGCAGTTTTTCAA 58.049 30.769 16.54 8.66 41.89 2.69
367 368 7.231317 ACTCATGAGAAAATAGGCAGTTTTTCA 59.769 33.333 29.27 11.37 41.89 2.69
368 369 7.597386 ACTCATGAGAAAATAGGCAGTTTTTC 58.403 34.615 29.27 9.96 40.49 2.29
369 370 7.530426 ACTCATGAGAAAATAGGCAGTTTTT 57.470 32.000 29.27 0.00 0.00 1.94
370 371 7.530426 AACTCATGAGAAAATAGGCAGTTTT 57.470 32.000 29.27 4.74 0.00 2.43
371 372 8.814038 ATAACTCATGAGAAAATAGGCAGTTT 57.186 30.769 29.27 10.23 0.00 2.66
372 373 9.905713 TTATAACTCATGAGAAAATAGGCAGTT 57.094 29.630 29.27 11.19 0.00 3.16
373 374 9.331282 GTTATAACTCATGAGAAAATAGGCAGT 57.669 33.333 29.27 0.00 0.00 4.40
374 375 9.553064 AGTTATAACTCATGAGAAAATAGGCAG 57.447 33.333 29.27 0.00 32.86 4.85
515 516 9.056005 GTTGTTACATGTGTATCATATCATGGT 57.944 33.333 9.11 0.00 41.01 3.55
536 538 4.769345 AATGAAATTGTGTGGGGTTGTT 57.231 36.364 0.00 0.00 33.44 2.83
567 2124 0.881118 GCATCGAGGCACAGGAAAAA 59.119 50.000 18.55 0.00 0.00 1.94
588 2145 4.856607 CTCGGAAGCGGAGGCGAC 62.857 72.222 0.00 0.00 46.35 5.19
606 2163 7.430441 CATTACCGAAAAGGAAAAAGAGGAAA 58.570 34.615 0.00 0.00 45.00 3.13
608 2165 5.048294 GCATTACCGAAAAGGAAAAAGAGGA 60.048 40.000 0.00 0.00 45.00 3.71
609 2166 5.048013 AGCATTACCGAAAAGGAAAAAGAGG 60.048 40.000 0.00 0.00 45.00 3.69
705 3970 3.493129 GCATTTCTTTTGGAAAACCGTCC 59.507 43.478 0.00 0.00 45.56 4.79
807 4072 6.395629 CCCGACGATTTCCATATATTGTAGT 58.604 40.000 0.00 0.00 0.00 2.73
808 4073 5.291128 GCCCGACGATTTCCATATATTGTAG 59.709 44.000 0.00 0.00 0.00 2.74
809 4074 5.172934 GCCCGACGATTTCCATATATTGTA 58.827 41.667 0.00 0.00 0.00 2.41
810 4075 4.000988 GCCCGACGATTTCCATATATTGT 58.999 43.478 0.00 0.00 0.00 2.71
811 4076 4.000325 TGCCCGACGATTTCCATATATTG 59.000 43.478 0.00 0.00 0.00 1.90
812 4077 4.000988 GTGCCCGACGATTTCCATATATT 58.999 43.478 0.00 0.00 0.00 1.28
828 4093 2.287915 GTGTCATTATTAGCAGTGCCCG 59.712 50.000 12.58 0.00 0.00 6.13
868 4133 4.687948 CGTTTCAGATATCGATGGCTTGAT 59.312 41.667 8.54 0.00 0.00 2.57
872 4137 2.628178 TCCGTTTCAGATATCGATGGCT 59.372 45.455 8.54 1.83 0.00 4.75
888 4153 2.280592 GTTGGCACCGTCTCCGTT 60.281 61.111 0.00 0.00 0.00 4.44
985 4451 3.190849 CATGGTGCGTGCGAGAGG 61.191 66.667 0.00 0.00 0.00 3.69
1070 4536 2.363147 AGAGAGAGACGGGGGTGC 60.363 66.667 0.00 0.00 0.00 5.01
1079 4545 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1080 4546 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1081 4547 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1082 4548 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1083 4549 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1084 4550 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1085 4551 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1086 4552 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1087 4553 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1088 4554 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1089 4555 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1090 4556 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1091 4557 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1092 4558 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1093 4559 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1094 4560 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1095 4561 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1096 4562 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1097 4563 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1098 4564 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1099 4565 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1100 4566 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1101 4567 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1102 4568 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1103 4569 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1104 4570 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1105 4571 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1106 4572 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1107 4573 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1108 4574 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1109 4575 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1110 4576 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1111 4577 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1112 4578 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
1113 4579 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
1114 4580 3.005261 CCGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
1155 4621 6.041637 GTGTTCATATGAGGTGAGGTATGGTA 59.958 42.308 5.39 0.00 0.00 3.25
1156 4622 4.968719 TGTTCATATGAGGTGAGGTATGGT 59.031 41.667 5.39 0.00 0.00 3.55
1157 4623 5.163311 TGTGTTCATATGAGGTGAGGTATGG 60.163 44.000 5.39 0.00 0.00 2.74
1158 4624 5.917462 TGTGTTCATATGAGGTGAGGTATG 58.083 41.667 5.39 0.00 0.00 2.39
1159 4625 6.156949 AGTTGTGTTCATATGAGGTGAGGTAT 59.843 38.462 5.39 0.00 0.00 2.73
1264 4734 3.084039 TCCTGCTGATAAACCAAGCAAG 58.916 45.455 0.00 0.00 34.96 4.01
1267 4737 2.680339 GTCTCCTGCTGATAAACCAAGC 59.320 50.000 0.00 0.00 0.00 4.01
1274 4744 4.038042 CGTCCTAATGTCTCCTGCTGATAA 59.962 45.833 0.00 0.00 0.00 1.75
1279 4749 1.115467 CCGTCCTAATGTCTCCTGCT 58.885 55.000 0.00 0.00 0.00 4.24
1333 4807 2.159827 GCTCACATCGAACGAGAAAACC 60.160 50.000 11.92 0.00 0.00 3.27
1386 4860 0.535102 AAGGAACACAAGGAGCACCG 60.535 55.000 0.00 0.00 41.83 4.94
1399 4879 7.391833 ACAGATCATAAGGAGACAAAAAGGAAC 59.608 37.037 0.00 0.00 0.00 3.62
1400 4880 7.461749 ACAGATCATAAGGAGACAAAAAGGAA 58.538 34.615 0.00 0.00 0.00 3.36
1402 4882 6.881065 TGACAGATCATAAGGAGACAAAAAGG 59.119 38.462 0.00 0.00 0.00 3.11
1403 4883 7.912056 TGACAGATCATAAGGAGACAAAAAG 57.088 36.000 0.00 0.00 0.00 2.27
1404 4884 7.391554 CCTTGACAGATCATAAGGAGACAAAAA 59.608 37.037 10.16 0.00 35.56 1.94
1405 4885 6.881065 CCTTGACAGATCATAAGGAGACAAAA 59.119 38.462 10.16 0.00 35.56 2.44
1406 4886 6.213397 TCCTTGACAGATCATAAGGAGACAAA 59.787 38.462 12.94 0.00 37.07 2.83
1407 4887 5.721480 TCCTTGACAGATCATAAGGAGACAA 59.279 40.000 12.94 0.00 37.07 3.18
1408 4888 5.127845 GTCCTTGACAGATCATAAGGAGACA 59.872 44.000 15.78 0.00 40.88 3.41
1409 4889 5.362430 AGTCCTTGACAGATCATAAGGAGAC 59.638 44.000 15.78 9.19 40.88 3.36
1410 4890 5.523588 AGTCCTTGACAGATCATAAGGAGA 58.476 41.667 15.78 0.02 40.88 3.71
1411 4891 5.362143 TGAGTCCTTGACAGATCATAAGGAG 59.638 44.000 15.78 0.00 40.88 3.69
1412 4892 5.272402 TGAGTCCTTGACAGATCATAAGGA 58.728 41.667 12.94 12.94 38.87 3.36
1413 4893 5.604758 TGAGTCCTTGACAGATCATAAGG 57.395 43.478 0.00 3.41 35.05 2.69
1414 4894 6.871844 TCTTGAGTCCTTGACAGATCATAAG 58.128 40.000 0.00 0.00 34.60 1.73
1415 4895 6.857437 TCTTGAGTCCTTGACAGATCATAA 57.143 37.500 0.00 0.00 34.60 1.90
1416 4896 6.608808 TGATCTTGAGTCCTTGACAGATCATA 59.391 38.462 15.90 2.50 40.90 2.15
1417 4897 5.424573 TGATCTTGAGTCCTTGACAGATCAT 59.575 40.000 15.90 0.00 40.90 2.45
1424 4904 6.640499 CGATTAGATGATCTTGAGTCCTTGAC 59.360 42.308 0.00 0.00 0.00 3.18
1450 4930 5.637387 GCCTGTAGAAGAAACAGAGAGAAAG 59.363 44.000 4.84 0.00 45.89 2.62
1464 4944 3.703001 TTTCCAGAAGGCCTGTAGAAG 57.297 47.619 5.69 0.00 41.33 2.85
1556 5038 0.179250 CTGTTTGAATCGGCGACACG 60.179 55.000 13.76 0.00 0.00 4.49
1557 5039 1.126846 CTCTGTTTGAATCGGCGACAC 59.873 52.381 13.76 10.14 0.00 3.67
1561 5043 5.712217 TTATAACTCTGTTTGAATCGGCG 57.288 39.130 0.00 0.00 0.00 6.46
1578 5060 9.249053 TGGAGTGGATTTTGTAAAGCATTATAA 57.751 29.630 0.00 0.00 0.00 0.98
1579 5061 8.815565 TGGAGTGGATTTTGTAAAGCATTATA 57.184 30.769 0.00 0.00 0.00 0.98
1580 5062 7.716799 TGGAGTGGATTTTGTAAAGCATTAT 57.283 32.000 0.00 0.00 0.00 1.28
1597 5079 1.457346 GCAGGTGAAGATTGGAGTGG 58.543 55.000 0.00 0.00 0.00 4.00
1607 5089 2.023673 TGACAACAAAGGCAGGTGAAG 58.976 47.619 0.00 0.00 0.00 3.02
1644 5126 7.001674 TGTTGTTCATATATATTCCACCCACC 58.998 38.462 0.00 0.00 0.00 4.61
1659 5141 8.301720 ACTACGAGTAATGAGTTGTTGTTCATA 58.698 33.333 0.00 0.00 33.09 2.15
1662 5144 7.281484 CAACTACGAGTAATGAGTTGTTGTTC 58.719 38.462 11.73 0.00 42.40 3.18
1726 5430 6.310149 TGAGGATCTATTAGCAGATGTCTGA 58.690 40.000 13.94 0.00 40.58 3.27
1730 5434 7.714377 CACTTTTGAGGATCTATTAGCAGATGT 59.286 37.037 0.00 0.00 35.37 3.06
1740 5444 4.225942 TCACCAGCACTTTTGAGGATCTAT 59.774 41.667 0.00 0.00 34.92 1.98
1747 5451 2.608752 GCCAATCACCAGCACTTTTGAG 60.609 50.000 0.00 0.00 0.00 3.02
1749 5453 1.342174 AGCCAATCACCAGCACTTTTG 59.658 47.619 0.00 0.00 0.00 2.44
1762 5466 0.469917 TAGTAGCCTGGCAGCCAATC 59.530 55.000 22.65 10.04 30.80 2.67
1763 5467 0.918983 TTAGTAGCCTGGCAGCCAAT 59.081 50.000 22.65 7.15 30.80 3.16
1764 5468 0.695924 TTTAGTAGCCTGGCAGCCAA 59.304 50.000 22.65 6.58 30.80 4.52
1765 5469 0.918983 ATTTAGTAGCCTGGCAGCCA 59.081 50.000 22.65 15.23 0.00 4.75
1766 5470 2.058593 AATTTAGTAGCCTGGCAGCC 57.941 50.000 22.65 3.66 0.00 4.85
1768 5488 5.049129 GCAGAATAATTTAGTAGCCTGGCAG 60.049 44.000 22.65 7.75 0.00 4.85
1772 5492 4.762251 GGGGCAGAATAATTTAGTAGCCTG 59.238 45.833 15.19 4.17 40.61 4.85
1773 5493 4.415512 TGGGGCAGAATAATTTAGTAGCCT 59.584 41.667 15.19 0.00 40.61 4.58
1787 5507 5.502089 AAAAATCATGAAATGGGGCAGAA 57.498 34.783 0.00 0.00 46.73 3.02
1853 5585 7.078249 AGGGATTTAAAAGGCTTGTCAAATT 57.922 32.000 0.00 0.00 0.00 1.82
1879 5619 6.007076 TCGAGACTCTGAGGAATAAGCATAT 58.993 40.000 9.85 0.00 0.00 1.78
1881 5621 4.211125 TCGAGACTCTGAGGAATAAGCAT 58.789 43.478 9.85 0.00 0.00 3.79
1901 5641 9.751542 ACCATCTTAGACTTTATGAATACTTCG 57.248 33.333 0.00 0.00 0.00 3.79
1945 5685 7.293745 CAGACTGTCAACAAACTTATTAGCAG 58.706 38.462 10.88 0.00 0.00 4.24
1957 5697 0.181114 AGCCAGCAGACTGTCAACAA 59.819 50.000 10.88 0.00 42.81 2.83
1992 5732 2.602257 TCAGAACCACACAGACACAG 57.398 50.000 0.00 0.00 0.00 3.66
1993 5733 3.342377 TTTCAGAACCACACAGACACA 57.658 42.857 0.00 0.00 0.00 3.72
1994 5734 3.938963 TCTTTTCAGAACCACACAGACAC 59.061 43.478 0.00 0.00 0.00 3.67
1995 5735 3.938963 GTCTTTTCAGAACCACACAGACA 59.061 43.478 0.00 0.00 31.56 3.41
1996 5736 3.938963 TGTCTTTTCAGAACCACACAGAC 59.061 43.478 0.00 0.00 0.00 3.51
1997 5737 4.214986 TGTCTTTTCAGAACCACACAGA 57.785 40.909 0.00 0.00 0.00 3.41
2012 5752 4.156008 GCACTTCCCACGAATAATGTCTTT 59.844 41.667 0.00 0.00 0.00 2.52
2107 5847 4.431416 TGGTGGTCAAATACTGTTCACT 57.569 40.909 0.00 0.00 33.07 3.41
2134 5874 7.275920 ACATACAGACAGATTATTCCCTGAAC 58.724 38.462 0.00 0.00 34.65 3.18
2185 5925 2.096496 CGTGATCCTTCAGATGGCAAAC 59.904 50.000 0.00 0.00 34.42 2.93
2221 5961 1.811558 CGATGCATCATCCGGGAAACT 60.812 52.381 25.70 0.00 37.57 2.66
2256 5996 0.609957 CAATGCCAGAGGGTGCTTCA 60.610 55.000 0.00 0.00 36.17 3.02
2388 6130 3.747099 AAAGAGAAATCAATCGCACGG 57.253 42.857 0.00 0.00 0.00 4.94
2479 6227 5.490213 CGCAAGGACGTATGAAGAAAATAC 58.510 41.667 0.00 0.00 0.00 1.89
2480 6228 4.033587 GCGCAAGGACGTATGAAGAAAATA 59.966 41.667 0.30 0.00 38.28 1.40
2481 6229 3.181510 GCGCAAGGACGTATGAAGAAAAT 60.182 43.478 0.30 0.00 38.28 1.82
2493 6241 1.398595 CAAAAAGAAGCGCAAGGACG 58.601 50.000 11.47 0.00 38.28 4.79
2500 6248 1.131771 GAGTTGGCAAAAAGAAGCGC 58.868 50.000 0.00 0.00 0.00 5.92
2537 6291 5.199726 GTGAAACATTGCAGTGAATTTTGC 58.800 37.500 16.98 0.00 37.56 3.68
2569 6324 7.419204 CCACTCATTGCAACAAAAATTGAAAT 58.581 30.769 0.00 0.00 38.20 2.17
2571 6326 5.296283 CCCACTCATTGCAACAAAAATTGAA 59.704 36.000 0.00 0.00 0.00 2.69
2588 6343 2.952978 ACGTTTTTATTGCACCCACTCA 59.047 40.909 0.00 0.00 0.00 3.41
2613 6369 5.416271 AATAACACAGACCGAGTAATGGT 57.584 39.130 0.00 0.00 44.10 3.55
2737 6541 3.831333 GGATCTATCAGCAGATGTCTGGA 59.169 47.826 11.66 2.36 43.94 3.86
2829 7332 9.755804 TTATTCATCACTAGCTAGAAAGATGTG 57.244 33.333 30.90 20.04 34.97 3.21
3161 9609 5.607119 AACGGTGATCAATACTGTTCAAC 57.393 39.130 0.00 0.00 42.34 3.18
3162 9610 5.561919 GCAAACGGTGATCAATACTGTTCAA 60.562 40.000 8.90 0.00 44.50 2.69
3282 9734 5.649395 TCATAGGGTCTGCTTTTTCTTCATG 59.351 40.000 0.00 0.00 0.00 3.07
3368 9820 2.170012 ATAAGGAAGGACAGGCCGTA 57.830 50.000 0.00 0.00 43.43 4.02
3418 9880 3.751518 AGTACCAACATTGACAAGGGAC 58.248 45.455 4.68 1.76 33.24 4.46
3571 10040 5.877564 TCAAATGTCAATGAATAGTACGGCA 59.122 36.000 0.00 0.00 0.00 5.69
3572 10041 6.358118 TCAAATGTCAATGAATAGTACGGC 57.642 37.500 0.00 0.00 0.00 5.68
3611 10100 7.867909 TCAAGGAGATGTTACATCGATGAATAC 59.132 37.037 31.33 22.52 0.00 1.89
3675 10172 4.016444 TCAACCTGGATAAAATGGAGCAC 58.984 43.478 0.00 0.00 0.00 4.40
3751 10248 4.921515 GGCGGAAAAACTTCAAATAGTTCC 59.078 41.667 0.00 0.00 37.37 3.62
3823 10320 6.935771 AGCTGTTGCAAATTGGATTAAAATCA 59.064 30.769 0.00 0.00 42.74 2.57
3946 10445 6.260936 AGTCCATTGCTAAAATGATAACTCCG 59.739 38.462 0.00 0.00 0.00 4.63
3984 10492 5.175126 ACACGTCGTGTAAGAAAATCTGAAG 59.825 40.000 28.69 0.00 45.56 3.02
4000 10508 4.379186 CCACTATCTTTGAGTACACGTCGT 60.379 45.833 0.00 0.00 0.00 4.34
4190 10698 0.109272 TGCTCTCGTTAGGCACTTCG 60.109 55.000 0.00 0.00 41.75 3.79
4252 12379 6.385649 TCACTGAACCCAAAACAGAATTAC 57.614 37.500 0.00 0.00 35.85 1.89
4327 12457 1.790043 CGCTGTCATGACGTGTAACAA 59.210 47.619 20.54 0.00 35.74 2.83
4332 12462 0.664466 CTGACGCTGTCATGACGTGT 60.664 55.000 25.85 25.85 41.94 4.49
4354 12484 3.181475 GGTAGTCGCATCATCTTCCAAGA 60.181 47.826 0.00 0.00 39.78 3.02
4367 12497 0.108186 CAATGAGCCTGGTAGTCGCA 60.108 55.000 0.00 0.00 0.00 5.10
4405 12541 4.133078 CAAGTCTGGTGCTTCTTTCTCTT 58.867 43.478 0.00 0.00 0.00 2.85
4431 12567 8.758715 GTTTTCATTTTCTTCTTTCATCACCAG 58.241 33.333 0.00 0.00 0.00 4.00
4443 12579 4.809673 AGCCCATCGTTTTCATTTTCTTC 58.190 39.130 0.00 0.00 0.00 2.87
4472 12608 1.865970 GCCTCGAGATGATTCAGCTTG 59.134 52.381 15.71 12.15 33.05 4.01
4518 12654 0.178990 ACCTTGTTGGCTTCCTCACC 60.179 55.000 0.00 0.00 40.22 4.02
4532 12668 5.107109 TGTGAATCAATTGAACGACCTTG 57.893 39.130 13.09 0.00 0.00 3.61
4537 12673 7.490962 ACTAGTTTGTGAATCAATTGAACGA 57.509 32.000 13.09 3.38 35.84 3.85
4538 12674 8.708742 TCTACTAGTTTGTGAATCAATTGAACG 58.291 33.333 13.09 0.00 35.84 3.95
4549 12685 6.096673 TCAGCACATCTACTAGTTTGTGAA 57.903 37.500 25.39 13.66 41.50 3.18
4553 12689 5.664457 TCCATCAGCACATCTACTAGTTTG 58.336 41.667 0.00 0.00 0.00 2.93
4581 12717 2.738314 GCAGGACACCATTTTCATTTGC 59.262 45.455 0.00 0.00 0.00 3.68
4582 12718 3.991773 CAGCAGGACACCATTTTCATTTG 59.008 43.478 0.00 0.00 0.00 2.32
4597 12733 1.556911 GATTCACCTTCTCCAGCAGGA 59.443 52.381 0.00 0.00 43.21 3.86
4670 12806 0.191064 TCCAGTTGACAGGGGTCTCT 59.809 55.000 0.00 0.00 44.61 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.