Multiple sequence alignment - TraesCS1B01G069000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G069000 chr1B 100.000 2926 0 0 1 2926 53366711 53363786 0.000000e+00 5404.0
1 TraesCS1B01G069000 chr1D 91.559 2488 85 54 1 2406 35061943 35059499 0.000000e+00 3315.0
2 TraesCS1B01G069000 chr1D 89.121 478 20 9 2469 2926 35059479 35059014 1.520000e-157 566.0
3 TraesCS1B01G069000 chr1A 88.478 1649 102 49 648 2242 33399108 33397494 0.000000e+00 1912.0
4 TraesCS1B01G069000 chr1A 91.879 628 26 12 1 611 33400084 33399465 0.000000e+00 854.0
5 TraesCS1B01G069000 chr1A 88.043 368 24 8 2312 2663 33391844 33391481 4.510000e-113 418.0
6 TraesCS1B01G069000 chr1A 87.805 369 24 8 2312 2663 33396636 33396272 2.100000e-111 412.0
7 TraesCS1B01G069000 chr1A 84.519 239 10 9 2692 2926 33391410 33391195 8.220000e-51 211.0
8 TraesCS1B01G069000 chr1A 84.519 239 10 9 2692 2926 33396201 33395986 8.220000e-51 211.0
9 TraesCS1B01G069000 chr1A 81.905 210 12 10 2049 2242 33392901 33392702 1.400000e-33 154.0
10 TraesCS1B01G069000 chr1A 96.429 56 0 2 2261 2315 33392540 33392486 1.120000e-14 91.6
11 TraesCS1B01G069000 chr1A 96.429 56 0 2 2261 2315 33397332 33397278 1.120000e-14 91.6
12 TraesCS1B01G069000 chr5D 88.670 203 23 0 1053 1255 254023397 254023599 6.260000e-62 248.0
13 TraesCS1B01G069000 chr5A 88.670 203 23 0 1053 1255 336950088 336950290 6.260000e-62 248.0
14 TraesCS1B01G069000 chr5A 81.522 184 31 3 1052 1234 111588858 111589039 6.530000e-32 148.0
15 TraesCS1B01G069000 chr5B 88.177 203 24 0 1053 1255 288892889 288892687 2.910000e-60 243.0
16 TraesCS1B01G069000 chr2B 83.684 190 31 0 1049 1238 740321098 740320909 2.320000e-41 180.0
17 TraesCS1B01G069000 chr2D 83.158 190 32 0 1049 1238 606709655 606709844 1.080000e-39 174.0
18 TraesCS1B01G069000 chr2A 82.632 190 33 0 1049 1238 738372126 738372315 5.010000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G069000 chr1B 53363786 53366711 2925 True 5404.000000 5404 100.000000 1 2926 1 chr1B.!!$R1 2925
1 TraesCS1B01G069000 chr1D 35059014 35061943 2929 True 1940.500000 3315 90.340000 1 2926 2 chr1D.!!$R1 2925
2 TraesCS1B01G069000 chr1A 33391195 33400084 8889 True 483.911111 1912 88.889556 1 2926 9 chr1A.!!$R1 2925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 379 0.027716 CGCGCGTAGTGTCATAGAGT 59.972 55.0 24.19 0.00 41.96 3.24 F
1649 2025 0.108424 ACGTTCATCCTGAGCTGCTC 60.108 55.0 22.38 22.38 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 2029 0.177604 GAGGTCAGGTCAGGCATGAG 59.822 60.0 0.00 0.0 38.68 2.90 R
2483 3752 0.966179 AATCCGGCCAAACTTGAACC 59.034 50.0 2.24 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.261405 CCTCGCTCTACTATCAGTTCCTTG 60.261 50.000 0.00 0.00 0.00 3.61
45 46 3.066900 TCGCTCTACTATCAGTTCCTTGC 59.933 47.826 0.00 0.00 0.00 4.01
73 84 0.454196 AAAAGCGTGGTGGTCACAAC 59.546 50.000 3.40 1.01 46.36 3.32
74 85 0.393808 AAAGCGTGGTGGTCACAACT 60.394 50.000 7.00 0.00 46.36 3.16
75 86 0.814010 AAGCGTGGTGGTCACAACTC 60.814 55.000 7.00 0.00 46.36 3.01
76 87 1.522806 GCGTGGTGGTCACAACTCA 60.523 57.895 7.00 0.00 46.36 3.41
77 88 1.772063 GCGTGGTGGTCACAACTCAC 61.772 60.000 7.00 3.39 46.36 3.51
78 89 0.461163 CGTGGTGGTCACAACTCACA 60.461 55.000 7.00 0.00 46.36 3.58
79 90 1.745232 GTGGTGGTCACAACTCACAA 58.255 50.000 3.40 0.00 45.39 3.33
128 139 1.998315 CGATTTCACTCACTGAGCCAG 59.002 52.381 5.92 1.16 37.52 4.85
130 141 0.250467 TTTCACTCACTGAGCCAGCC 60.250 55.000 5.92 0.00 34.37 4.85
312 328 2.480224 CGTATGTACGTACCCACTGG 57.520 55.000 22.43 5.51 44.13 4.00
363 379 0.027716 CGCGCGTAGTGTCATAGAGT 59.972 55.000 24.19 0.00 41.96 3.24
365 381 2.096367 CGCGCGTAGTGTCATAGAGTAT 60.096 50.000 24.19 0.00 41.96 2.12
366 382 3.227147 GCGCGTAGTGTCATAGAGTATG 58.773 50.000 8.43 0.00 41.96 2.39
367 383 3.227147 CGCGTAGTGTCATAGAGTATGC 58.773 50.000 0.00 0.00 36.14 3.14
369 385 3.059120 GCGTAGTGTCATAGAGTATGCGA 60.059 47.826 0.00 0.00 36.14 5.10
383 400 0.601558 ATGCGAAGTACCACGAGTGT 59.398 50.000 12.34 0.00 0.00 3.55
535 556 2.558286 CCGGCCACCATCATCATGC 61.558 63.158 2.24 0.00 0.00 4.06
685 1027 2.765699 TCACTCTACACAGCCATATGCA 59.234 45.455 0.00 0.00 44.83 3.96
686 1028 3.389002 TCACTCTACACAGCCATATGCAT 59.611 43.478 3.79 3.79 44.83 3.96
687 1029 3.497262 CACTCTACACAGCCATATGCATG 59.503 47.826 10.16 0.00 44.83 4.06
688 1030 2.483106 CTCTACACAGCCATATGCATGC 59.517 50.000 11.82 11.82 44.83 4.06
689 1031 2.158784 TCTACACAGCCATATGCATGCA 60.159 45.455 25.04 25.04 44.83 3.96
751 1099 4.096681 TCACTCACTCTCTCTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
752 1100 4.532126 TCACTCACTCTCTCTCTCTCTCTT 59.468 45.833 0.00 0.00 0.00 2.85
797 1145 3.371021 CACTGGAGAGTGTCGCCT 58.629 61.111 0.00 0.00 44.15 5.52
857 1205 4.601794 TGGCTTGCCACACAGGGG 62.602 66.667 10.65 0.00 38.09 4.79
944 1295 0.317479 ACCTTTTGTCTCTCCGTCCG 59.683 55.000 0.00 0.00 0.00 4.79
961 1323 1.003355 CGCAGTCCACTCCACCAAT 60.003 57.895 0.00 0.00 0.00 3.16
967 1329 2.695666 AGTCCACTCCACCAATAGATCG 59.304 50.000 0.00 0.00 0.00 3.69
1163 1525 4.760047 GATCACGGCGCACCTGGT 62.760 66.667 10.83 0.00 0.00 4.00
1281 1643 4.154347 CACCTCCTCTCCTGCGCC 62.154 72.222 4.18 0.00 0.00 6.53
1461 1826 1.144057 CGTCCCAGCTTCCGCTTAT 59.856 57.895 0.00 0.00 46.47 1.73
1465 1830 1.442526 CCCAGCTTCCGCTTATGCTG 61.443 60.000 13.07 13.07 46.47 4.41
1466 1831 1.354506 CAGCTTCCGCTTATGCTGC 59.645 57.895 9.19 0.00 46.47 5.25
1467 1832 1.094073 CAGCTTCCGCTTATGCTGCT 61.094 55.000 0.00 1.23 46.47 4.24
1568 1933 1.906574 GTCCTTCCATCACCAGGTACA 59.093 52.381 0.00 0.00 0.00 2.90
1639 2015 3.106672 CTCGTACAAGCTACGTTCATCC 58.893 50.000 7.35 0.00 41.25 3.51
1647 2023 1.565305 CTACGTTCATCCTGAGCTGC 58.435 55.000 0.00 0.00 0.00 5.25
1648 2024 1.135915 CTACGTTCATCCTGAGCTGCT 59.864 52.381 0.00 0.00 0.00 4.24
1649 2025 0.108424 ACGTTCATCCTGAGCTGCTC 60.108 55.000 22.38 22.38 0.00 4.26
1650 2026 0.108472 CGTTCATCCTGAGCTGCTCA 60.108 55.000 28.77 28.77 38.25 4.26
1651 2027 1.472904 CGTTCATCCTGAGCTGCTCAT 60.473 52.381 30.50 15.13 39.92 2.90
1652 2028 1.941294 GTTCATCCTGAGCTGCTCATG 59.059 52.381 30.50 26.79 39.92 3.07
1653 2029 0.179054 TCATCCTGAGCTGCTCATGC 60.179 55.000 30.50 5.95 39.92 4.06
1660 2040 1.824329 AGCTGCTCATGCTCATGCC 60.824 57.895 0.00 0.36 38.65 4.40
1681 2061 5.020132 GCCTGACCTGACCTCATATATACT 58.980 45.833 0.00 0.00 0.00 2.12
1727 2108 0.471191 TAGGATCGCCGGAGTACTCA 59.529 55.000 23.91 3.71 39.96 3.41
1916 2306 3.465403 AAGGAGGAGCAGCGCGAT 61.465 61.111 12.10 0.00 0.00 4.58
1936 2333 1.041437 GTCGCCTAGCTACCTCCAAT 58.959 55.000 0.00 0.00 0.00 3.16
1990 2397 2.159379 TCGTCGTAGTACGTAGAGCAGA 60.159 50.000 21.38 9.21 43.14 4.26
2030 2467 0.811915 AGCAGCAGTACGTAGGAGTG 59.188 55.000 0.00 0.00 0.00 3.51
2043 2480 5.867330 ACGTAGGAGTGCTATCATACTAGT 58.133 41.667 0.00 0.00 34.98 2.57
2047 2484 7.063662 CGTAGGAGTGCTATCATACTAGTAGTG 59.936 44.444 13.29 7.25 34.98 2.74
2098 2543 7.383029 CGTTGATTATTAATCCGCTTAGTACCA 59.617 37.037 12.71 0.00 37.09 3.25
2100 2545 6.872020 TGATTATTAATCCGCTTAGTACCAGC 59.128 38.462 12.71 4.81 37.09 4.85
2122 2567 1.728971 GATCTTCAGCTTGACGTGGTG 59.271 52.381 0.00 0.00 0.00 4.17
2123 2568 0.464036 TCTTCAGCTTGACGTGGTGT 59.536 50.000 0.00 0.00 34.86 4.16
2124 2569 1.684450 TCTTCAGCTTGACGTGGTGTA 59.316 47.619 0.00 0.00 34.86 2.90
2135 2580 1.884579 ACGTGGTGTAGTAGGAGTGTG 59.115 52.381 0.00 0.00 0.00 3.82
2157 2602 1.485294 TAGGTTGGCGGCAGGAAGAA 61.485 55.000 12.87 0.00 0.00 2.52
2231 2687 4.124351 CAAGTGCATGCTGCCCCG 62.124 66.667 20.33 0.00 44.23 5.73
2369 3619 6.827762 TCAAGTGTGTATGCATGGATGAAATA 59.172 34.615 10.16 0.00 0.00 1.40
2373 3623 7.722728 AGTGTGTATGCATGGATGAAATATTCT 59.277 33.333 10.16 0.00 0.00 2.40
2437 3699 1.014352 CCTACACAAATGCTACCGCC 58.986 55.000 0.00 0.00 34.43 6.13
2438 3700 1.677518 CCTACACAAATGCTACCGCCA 60.678 52.381 0.00 0.00 34.43 5.69
2439 3701 2.080693 CTACACAAATGCTACCGCCAA 58.919 47.619 0.00 0.00 34.43 4.52
2440 3702 0.881118 ACACAAATGCTACCGCCAAG 59.119 50.000 0.00 0.00 34.43 3.61
2483 3752 2.541466 AGAAGTGGGGACTAGAGTTGG 58.459 52.381 0.00 0.00 0.00 3.77
2484 3753 1.555533 GAAGTGGGGACTAGAGTTGGG 59.444 57.143 0.00 0.00 0.00 4.12
2581 3853 7.144722 TCTGCCTCTGTGTGTAATTTAAATG 57.855 36.000 0.39 0.00 0.00 2.32
2690 4031 7.747888 TGCATATGCGCTCGTTAATTAAATAT 58.252 30.769 22.21 0.00 45.83 1.28
2691 4032 8.874816 TGCATATGCGCTCGTTAATTAAATATA 58.125 29.630 22.21 0.00 45.83 0.86
2692 4033 9.864034 GCATATGCGCTCGTTAATTAAATATAT 57.136 29.630 12.82 0.00 0.00 0.86
2840 4184 5.914635 ACACACACACAATCAAATCGAATTC 59.085 36.000 0.00 0.00 0.00 2.17
2842 4186 6.087159 CACACACACAATCAAATCGAATTCAG 59.913 38.462 6.22 0.00 0.00 3.02
2854 8989 1.197721 CGAATTCAGAACCACCACTGC 59.802 52.381 6.22 0.00 34.57 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 84 3.001414 CAGAATGTGAGGAGCTTGTGAG 58.999 50.000 0.00 0.00 0.00 3.51
74 85 2.873245 GCAGAATGTGAGGAGCTTGTGA 60.873 50.000 0.00 0.00 39.31 3.58
75 86 1.467734 GCAGAATGTGAGGAGCTTGTG 59.532 52.381 0.00 0.00 39.31 3.33
76 87 1.072806 TGCAGAATGTGAGGAGCTTGT 59.927 47.619 0.00 0.00 39.31 3.16
77 88 1.738350 CTGCAGAATGTGAGGAGCTTG 59.262 52.381 8.42 0.00 39.31 4.01
78 89 1.949547 GCTGCAGAATGTGAGGAGCTT 60.950 52.381 20.43 0.00 39.31 3.74
79 90 0.392729 GCTGCAGAATGTGAGGAGCT 60.393 55.000 20.43 0.00 39.31 4.09
128 139 2.121538 GGAATTCGGCTTGGGAGGC 61.122 63.158 0.00 0.00 44.55 4.70
130 141 1.078426 ACGGAATTCGGCTTGGGAG 60.078 57.895 12.54 0.00 44.45 4.30
161 172 4.344679 TGTGGAAGTTGCAAAATTGGAGAT 59.655 37.500 0.00 0.00 32.38 2.75
312 328 3.461946 GCTGAAGCGGAATATACATGC 57.538 47.619 0.00 0.00 0.00 4.06
356 372 4.024302 TCGTGGTACTTCGCATACTCTATG 60.024 45.833 0.00 0.00 39.18 2.23
363 379 1.814394 ACACTCGTGGTACTTCGCATA 59.186 47.619 1.77 0.00 34.19 3.14
365 381 0.039798 GACACTCGTGGTACTTCGCA 60.040 55.000 1.77 0.00 34.19 5.10
366 382 0.039798 TGACACTCGTGGTACTTCGC 60.040 55.000 1.77 0.00 34.19 4.70
367 383 2.410785 TTGACACTCGTGGTACTTCG 57.589 50.000 1.77 0.00 34.19 3.79
369 385 5.850614 AGTTATTTGACACTCGTGGTACTT 58.149 37.500 1.77 0.00 34.19 2.24
383 400 7.598869 GTGATGGATATACGCAGAGTTATTTGA 59.401 37.037 0.00 0.00 0.00 2.69
527 548 5.933463 TGTATAATCGATTGCAGCATGATGA 59.067 36.000 20.87 0.00 39.69 2.92
535 556 6.452244 TCGTGATTGTATAATCGATTGCAG 57.548 37.500 20.87 5.32 44.55 4.41
676 1018 1.805345 GAGAGAGTGCATGCATATGGC 59.195 52.381 25.64 10.61 45.13 4.40
681 1023 3.318839 GTCTAGAGAGAGAGTGCATGCAT 59.681 47.826 25.64 12.95 30.20 3.96
682 1024 2.687425 GTCTAGAGAGAGAGTGCATGCA 59.313 50.000 18.46 18.46 30.20 3.96
685 1027 2.092646 ACGGTCTAGAGAGAGAGTGCAT 60.093 50.000 0.00 0.00 30.20 3.96
686 1028 1.279558 ACGGTCTAGAGAGAGAGTGCA 59.720 52.381 0.00 0.00 30.20 4.57
687 1029 2.032680 ACGGTCTAGAGAGAGAGTGC 57.967 55.000 0.00 0.00 30.20 4.40
688 1030 2.940410 GGAACGGTCTAGAGAGAGAGTG 59.060 54.545 0.00 0.00 30.20 3.51
689 1031 2.092807 GGGAACGGTCTAGAGAGAGAGT 60.093 54.545 0.00 0.00 30.20 3.24
857 1205 1.282817 GTTCGTTTGGTTTGGTTGCC 58.717 50.000 0.00 0.00 0.00 4.52
944 1295 1.555075 TCTATTGGTGGAGTGGACTGC 59.445 52.381 0.00 0.00 34.66 4.40
961 1323 0.309302 GCTCGCTCTTGCTCGATCTA 59.691 55.000 0.00 0.00 36.97 1.98
967 1329 0.594796 GCTCTAGCTCGCTCTTGCTC 60.595 60.000 0.00 0.00 40.35 4.26
977 1339 1.520342 CGTGCCAAGGCTCTAGCTC 60.520 63.158 12.96 1.31 42.51 4.09
1163 1525 4.201679 CGATGCGGCCGTAGTGGA 62.202 66.667 28.70 0.00 42.00 4.02
1414 1779 2.973899 CAGGTGCTGGTCGTAGCT 59.026 61.111 0.00 0.00 44.01 3.32
1465 1830 3.130160 GTACCCAGCAGCAGCAGC 61.130 66.667 3.17 0.46 45.49 5.25
1466 1831 2.816958 CGTACCCAGCAGCAGCAG 60.817 66.667 3.17 0.00 45.49 4.24
1568 1933 3.306571 GGACGACAAGGTAGCTTAGGTTT 60.307 47.826 6.90 0.00 0.00 3.27
1653 2029 0.177604 GAGGTCAGGTCAGGCATGAG 59.822 60.000 0.00 0.00 38.68 2.90
1660 2040 7.885922 ACAGTAGTATATATGAGGTCAGGTCAG 59.114 40.741 0.00 0.00 0.00 3.51
1681 2061 2.248248 CTCCACCCTGAAGTCACAGTA 58.752 52.381 0.00 0.00 36.30 2.74
1810 2197 2.892640 CCTGATCTTCCGTCGCCA 59.107 61.111 0.00 0.00 0.00 5.69
1916 2306 0.323999 TTGGAGGTAGCTAGGCGACA 60.324 55.000 0.00 0.00 35.94 4.35
1957 2358 0.738762 TACGACGACGACTGCTAGCT 60.739 55.000 17.23 0.00 42.66 3.32
1958 2359 0.315220 CTACGACGACGACTGCTAGC 60.315 60.000 15.32 8.10 42.66 3.42
1959 2360 0.997932 ACTACGACGACGACTGCTAG 59.002 55.000 15.32 7.26 42.66 3.42
1960 2361 1.920574 GTACTACGACGACGACTGCTA 59.079 52.381 15.32 0.00 42.66 3.49
1990 2397 1.654954 CTGCTCTACCTGCGTACGGT 61.655 60.000 18.39 9.12 38.55 4.83
2043 2480 6.288941 TCGATGGGAAATACAAAGACACTA 57.711 37.500 0.00 0.00 0.00 2.74
2047 2484 7.218204 CGAAAAATCGATGGGAAATACAAAGAC 59.782 37.037 0.00 0.00 34.64 3.01
2056 2496 5.637006 ATCAACGAAAAATCGATGGGAAA 57.363 34.783 0.00 0.00 36.71 3.13
2100 2545 1.998315 CCACGTCAAGCTGAAGATCAG 59.002 52.381 3.00 3.00 46.90 2.90
2116 2561 1.201647 CCACACTCCTACTACACCACG 59.798 57.143 0.00 0.00 0.00 4.94
2118 2563 1.148446 ACCCACACTCCTACTACACCA 59.852 52.381 0.00 0.00 0.00 4.17
2122 2567 3.378861 ACCTACCCACACTCCTACTAC 57.621 52.381 0.00 0.00 0.00 2.73
2123 2568 3.565010 CCAACCTACCCACACTCCTACTA 60.565 52.174 0.00 0.00 0.00 1.82
2124 2569 2.537143 CAACCTACCCACACTCCTACT 58.463 52.381 0.00 0.00 0.00 2.57
2135 2580 4.796495 CCTGCCGCCAACCTACCC 62.796 72.222 0.00 0.00 0.00 3.69
2157 2602 2.658373 TCAATGCATGCATTCGCTTT 57.342 40.000 36.90 18.40 43.92 3.51
2242 2698 0.397816 ACCTAGCTAGTCCTGGGCTG 60.398 60.000 19.31 2.13 36.99 4.85
2244 2700 1.133419 ACTACCTAGCTAGTCCTGGGC 60.133 57.143 19.31 0.00 36.99 5.36
2245 2701 3.811454 GCTACTACCTAGCTAGTCCTGGG 60.811 56.522 19.31 6.46 44.24 4.45
2369 3619 2.225117 ACTAGCTGGGGCAACAAAGAAT 60.225 45.455 0.85 0.00 41.70 2.40
2373 3623 1.178534 GCACTAGCTGGGGCAACAAA 61.179 55.000 20.78 0.00 41.70 2.83
2451 3713 4.041075 GTCCCCACTTCTTCTTCTTCTTCT 59.959 45.833 0.00 0.00 0.00 2.85
2458 3720 4.090819 ACTCTAGTCCCCACTTCTTCTTC 58.909 47.826 0.00 0.00 33.62 2.87
2461 3723 3.055747 CCAACTCTAGTCCCCACTTCTTC 60.056 52.174 0.00 0.00 33.62 2.87
2464 3733 1.555533 CCCAACTCTAGTCCCCACTTC 59.444 57.143 0.00 0.00 33.62 3.01
2467 3736 1.278413 GAACCCAACTCTAGTCCCCAC 59.722 57.143 0.00 0.00 0.00 4.61
2483 3752 0.966179 AATCCGGCCAAACTTGAACC 59.034 50.000 2.24 0.00 0.00 3.62
2484 3753 1.611491 TGAATCCGGCCAAACTTGAAC 59.389 47.619 2.24 0.00 0.00 3.18
2659 3946 1.794701 ACGAGCGCATATGCACTTATG 59.205 47.619 26.52 17.22 42.21 1.90
2660 3947 2.154854 ACGAGCGCATATGCACTTAT 57.845 45.000 26.52 11.86 42.21 1.73
2661 3948 1.934589 AACGAGCGCATATGCACTTA 58.065 45.000 26.52 0.00 42.21 2.24
2662 3949 1.934589 TAACGAGCGCATATGCACTT 58.065 45.000 26.52 11.51 42.21 3.16
2663 3950 1.934589 TTAACGAGCGCATATGCACT 58.065 45.000 26.52 22.40 42.21 4.40
2664 3951 2.949714 ATTAACGAGCGCATATGCAC 57.050 45.000 26.52 17.77 42.21 4.57
2665 3952 5.411083 TTTAATTAACGAGCGCATATGCA 57.589 34.783 26.52 5.54 42.21 3.96
2666 3953 9.864034 ATATATTTAATTAACGAGCGCATATGC 57.136 29.630 18.08 18.08 37.78 3.14
2690 4031 8.052748 GGTCCCATGCCATATCAGTTAATTATA 58.947 37.037 0.00 0.00 0.00 0.98
2691 4032 6.891908 GGTCCCATGCCATATCAGTTAATTAT 59.108 38.462 0.00 0.00 0.00 1.28
2692 4033 6.183361 TGGTCCCATGCCATATCAGTTAATTA 60.183 38.462 0.00 0.00 0.00 1.40
2693 4034 5.079643 GGTCCCATGCCATATCAGTTAATT 58.920 41.667 0.00 0.00 0.00 1.40
2703 4044 1.568123 TGATGTTGGTCCCATGCCATA 59.432 47.619 0.00 0.00 35.71 2.74
2840 4184 2.591429 TGCGCAGTGGTGGTTCTG 60.591 61.111 5.66 0.00 35.12 3.02
2842 4186 4.030452 GCTGCGCAGTGGTGGTTC 62.030 66.667 35.80 14.95 0.00 3.62
2901 9037 2.631160 TTGGACCACACTCATCGTTT 57.369 45.000 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.