Multiple sequence alignment - TraesCS1B01G067000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G067000 chr1B 100.000 2351 0 0 1 2351 51298932 51301282 0.000000e+00 4342.0
1 TraesCS1B01G067000 chr1B 83.900 559 60 25 871 1416 51538890 51539431 7.500000e-140 507.0
2 TraesCS1B01G067000 chr1B 83.214 560 62 25 871 1416 51546294 51546835 3.510000e-133 484.0
3 TraesCS1B01G067000 chr1B 81.094 640 75 28 754 1386 51589889 51590489 9.840000e-129 470.0
4 TraesCS1B01G067000 chr1B 98.485 132 2 0 2220 2351 481755101 481754970 1.400000e-57 233.0
5 TraesCS1B01G067000 chr1B 84.646 254 16 12 1750 1980 51502757 51503010 5.050000e-57 231.0
6 TraesCS1B01G067000 chr1B 90.909 121 8 2 410 527 51321068 51321188 2.420000e-35 159.0
7 TraesCS1B01G067000 chr1B 92.537 67 2 3 1459 1525 51470605 51470668 2.490000e-15 93.5
8 TraesCS1B01G067000 chr1B 82.727 110 7 3 410 507 51143567 51143676 1.160000e-13 87.9
9 TraesCS1B01G067000 chr1A 87.131 746 49 24 692 1399 32291134 32291870 0.000000e+00 802.0
10 TraesCS1B01G067000 chr1A 84.204 804 76 31 939 1710 32302155 32302939 0.000000e+00 734.0
11 TraesCS1B01G067000 chr1A 83.152 552 65 22 862 1399 32451268 32451805 1.630000e-131 479.0
12 TraesCS1B01G067000 chr1A 81.126 657 57 35 759 1399 32454251 32454856 4.580000e-127 464.0
13 TraesCS1B01G067000 chr1A 81.868 364 21 13 251 589 32290710 32291053 4.980000e-67 265.0
14 TraesCS1B01G067000 chr1A 85.281 231 16 6 245 473 32263923 32264137 3.040000e-54 222.0
15 TraesCS1B01G067000 chr1A 77.143 385 47 27 1414 1765 32451859 32452235 3.990000e-43 185.0
16 TraesCS1B01G067000 chr1A 84.404 109 9 4 464 571 32451001 32451102 1.490000e-17 100.0
17 TraesCS1B01G067000 chr1D 89.726 584 39 14 874 1451 33663720 33664288 0.000000e+00 726.0
18 TraesCS1B01G067000 chr1D 88.091 613 26 14 1 589 33662892 33663481 0.000000e+00 684.0
19 TraesCS1B01G067000 chr1D 81.515 660 72 27 759 1397 33712077 33712707 4.510000e-137 497.0
20 TraesCS1B01G067000 chr1D 84.026 457 50 16 944 1390 33705603 33706046 3.610000e-113 418.0
21 TraesCS1B01G067000 chr1D 84.703 353 24 14 1657 1980 33664630 33664981 2.250000e-85 326.0
22 TraesCS1B01G067000 chr1D 84.190 253 18 11 1750 1980 33699556 33699808 2.350000e-55 226.0
23 TraesCS1B01G067000 chr1D 77.354 393 41 26 1414 1765 33706112 33706497 3.080000e-44 189.0
24 TraesCS1B01G067000 chr1D 85.380 171 18 3 1652 1816 33699390 33699559 1.120000e-38 171.0
25 TraesCS1B01G067000 chr1D 91.228 114 5 4 695 803 33663599 33663712 1.460000e-32 150.0
26 TraesCS1B01G067000 chr1D 91.346 104 6 2 410 512 33705388 33705489 3.150000e-29 139.0
27 TraesCS1B01G067000 chr1D 83.125 160 13 8 149 305 33642473 33642621 1.470000e-27 134.0
28 TraesCS1B01G067000 chr1D 89.362 94 10 0 1245 1338 33669412 33669505 4.100000e-23 119.0
29 TraesCS1B01G067000 chr5B 98.347 242 4 0 1979 2220 550391009 550390768 2.160000e-115 425.0
30 TraesCS1B01G067000 chr5B 98.485 132 2 0 2220 2351 499906037 499905906 1.400000e-57 233.0
31 TraesCS1B01G067000 chr5B 97.122 139 3 1 2213 2351 604122552 604122415 1.400000e-57 233.0
32 TraesCS1B01G067000 chr3B 97.531 243 6 0 1978 2220 420410640 420410882 1.300000e-112 416.0
33 TraesCS1B01G067000 chr3B 97.119 243 7 0 1978 2220 263273095 263272853 6.050000e-111 411.0
34 TraesCS1B01G067000 chr3B 96.708 243 8 0 1978 2220 96426152 96426394 2.810000e-109 405.0
35 TraesCS1B01G067000 chr3B 98.496 133 2 0 2219 2351 598486461 598486593 3.910000e-58 235.0
36 TraesCS1B01G067000 chr3B 98.485 132 2 0 2220 2351 488948556 488948687 1.400000e-57 233.0
37 TraesCS1B01G067000 chr6B 97.521 242 6 0 1979 2220 375596695 375596454 4.670000e-112 414.0
38 TraesCS1B01G067000 chr6B 99.237 131 1 0 2221 2351 470136977 470137107 1.090000e-58 237.0
39 TraesCS1B01G067000 chr6B 85.484 62 3 4 617 676 90975416 90975359 2.520000e-05 60.2
40 TraesCS1B01G067000 chr7B 96.721 244 8 0 1977 2220 714624061 714624304 7.820000e-110 407.0
41 TraesCS1B01G067000 chr7B 98.485 132 2 0 2220 2351 687149265 687149396 1.400000e-57 233.0
42 TraesCS1B01G067000 chr5A 96.708 243 8 0 1978 2220 595039322 595039080 2.810000e-109 405.0
43 TraesCS1B01G067000 chr4B 96.708 243 8 0 1978 2220 108917498 108917740 2.810000e-109 405.0
44 TraesCS1B01G067000 chr4B 96.708 243 6 2 1979 2220 127191751 127191992 1.010000e-108 403.0
45 TraesCS1B01G067000 chr4B 97.080 137 4 0 2215 2351 584808320 584808456 5.050000e-57 231.0
46 TraesCS1B01G067000 chr2B 98.485 132 2 0 2220 2351 739212764 739212633 1.400000e-57 233.0
47 TraesCS1B01G067000 chrUn 92.537 67 2 3 1459 1525 266948784 266948847 2.490000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G067000 chr1B 51298932 51301282 2350 False 4342.000000 4342 100.00000 1 2351 1 chr1B.!!$F2 2350
1 TraesCS1B01G067000 chr1B 51538890 51539431 541 False 507.000000 507 83.90000 871 1416 1 chr1B.!!$F6 545
2 TraesCS1B01G067000 chr1B 51546294 51546835 541 False 484.000000 484 83.21400 871 1416 1 chr1B.!!$F7 545
3 TraesCS1B01G067000 chr1B 51589889 51590489 600 False 470.000000 470 81.09400 754 1386 1 chr1B.!!$F8 632
4 TraesCS1B01G067000 chr1A 32302155 32302939 784 False 734.000000 734 84.20400 939 1710 1 chr1A.!!$F2 771
5 TraesCS1B01G067000 chr1A 32290710 32291870 1160 False 533.500000 802 84.49950 251 1399 2 chr1A.!!$F3 1148
6 TraesCS1B01G067000 chr1A 32451001 32454856 3855 False 307.000000 479 81.45625 464 1765 4 chr1A.!!$F4 1301
7 TraesCS1B01G067000 chr1D 33712077 33712707 630 False 497.000000 497 81.51500 759 1397 1 chr1D.!!$F3 638
8 TraesCS1B01G067000 chr1D 33662892 33664981 2089 False 471.500000 726 88.43700 1 1980 4 chr1D.!!$F4 1979
9 TraesCS1B01G067000 chr1D 33705388 33706497 1109 False 248.666667 418 84.24200 410 1765 3 chr1D.!!$F6 1355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 724 0.098728 GCTTGCGTCAACACTGTGTT 59.901 50.0 19.85 19.85 42.08 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 5850 0.043032 TACCCAACCCCCGACATACT 59.957 55.0 0.0 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.091441 GCACTTCTCTGTAAACCTTGTCTATG 59.909 42.308 0.00 0.00 0.00 2.23
88 89 4.686191 TGTTACTTCTTACCCAACGGAA 57.314 40.909 0.00 0.00 0.00 4.30
116 117 8.411683 ACTATTCAAGAAATGATTGCCATTCTC 58.588 33.333 0.00 0.00 44.28 2.87
117 118 6.593268 TTCAAGAAATGATTGCCATTCTCA 57.407 33.333 0.00 0.00 44.28 3.27
118 119 6.593268 TCAAGAAATGATTGCCATTCTCAA 57.407 33.333 0.00 0.00 44.28 3.02
190 191 5.830457 TGGTAACCAGAAATTTGTGACATGA 59.170 36.000 16.43 0.00 0.00 3.07
208 209 4.912214 CATGATACATGCATGTTCGTTGT 58.088 39.130 35.45 14.66 41.97 3.32
229 230 7.906010 CGTTGTTTTCATGTAGCCGAATATTTA 59.094 33.333 0.00 0.00 0.00 1.40
234 235 8.958119 TTTCATGTAGCCGAATATTTAAGAGT 57.042 30.769 0.00 0.00 0.00 3.24
237 238 9.042008 TCATGTAGCCGAATATTTAAGAGTTTC 57.958 33.333 0.00 0.00 0.00 2.78
336 338 3.850098 CTCCACAGCCACCCACCAC 62.850 68.421 0.00 0.00 0.00 4.16
358 360 2.978156 TGAAAGGGAATCCAGCTGTT 57.022 45.000 13.81 0.24 34.83 3.16
376 384 4.748144 GGTCCTTGGCCTGCCTGG 62.748 72.222 9.97 11.44 36.94 4.45
441 449 4.018779 ACCTTCATCGGTAAGGAAATCCAA 60.019 41.667 15.40 0.00 45.41 3.53
499 524 7.479980 TCGACATGGAAATGGAATGAAATAAC 58.520 34.615 0.00 0.00 0.00 1.89
532 557 2.706834 GGCAACGTGTAATGGGCCC 61.707 63.158 17.59 17.59 40.31 5.80
556 590 2.099263 GCTCTGCATTAGTACGAGACCA 59.901 50.000 1.37 0.00 0.00 4.02
578 612 1.705997 GGAGGTGTCAACTGGGTGGT 61.706 60.000 0.00 0.00 0.00 4.16
579 613 0.535102 GAGGTGTCAACTGGGTGGTG 60.535 60.000 0.00 0.00 33.88 4.17
581 615 1.529796 GTGTCAACTGGGTGGTGGA 59.470 57.895 0.00 0.00 33.29 4.02
601 658 1.531522 GCAACTGCGTTTGTGAAGCG 61.532 55.000 0.00 0.00 0.00 4.68
612 672 1.847975 GTGAAGCGCACGACGTAAA 59.152 52.632 11.47 0.00 46.11 2.01
613 673 0.179282 GTGAAGCGCACGACGTAAAG 60.179 55.000 11.47 0.00 46.11 1.85
614 674 0.318022 TGAAGCGCACGACGTAAAGA 60.318 50.000 11.47 0.00 46.11 2.52
615 675 0.989890 GAAGCGCACGACGTAAAGAT 59.010 50.000 11.47 0.00 46.11 2.40
616 676 2.179589 GAAGCGCACGACGTAAAGATA 58.820 47.619 11.47 0.00 46.11 1.98
617 677 1.823828 AGCGCACGACGTAAAGATAG 58.176 50.000 11.47 0.00 46.11 2.08
618 678 0.844503 GCGCACGACGTAAAGATAGG 59.155 55.000 0.30 0.00 46.11 2.57
619 679 1.474017 CGCACGACGTAAAGATAGGG 58.526 55.000 0.00 0.00 36.87 3.53
620 680 1.202222 CGCACGACGTAAAGATAGGGT 60.202 52.381 0.00 0.00 36.87 4.34
621 681 2.190981 GCACGACGTAAAGATAGGGTG 58.809 52.381 0.00 0.00 0.00 4.61
622 682 2.416431 GCACGACGTAAAGATAGGGTGT 60.416 50.000 0.00 0.00 0.00 4.16
623 683 3.176708 CACGACGTAAAGATAGGGTGTG 58.823 50.000 0.00 0.00 0.00 3.82
624 684 2.821969 ACGACGTAAAGATAGGGTGTGT 59.178 45.455 0.00 0.00 0.00 3.72
625 685 3.176708 CGACGTAAAGATAGGGTGTGTG 58.823 50.000 0.00 0.00 0.00 3.82
626 686 3.366679 CGACGTAAAGATAGGGTGTGTGT 60.367 47.826 0.00 0.00 0.00 3.72
627 687 3.921677 ACGTAAAGATAGGGTGTGTGTG 58.078 45.455 0.00 0.00 0.00 3.82
628 688 2.671396 CGTAAAGATAGGGTGTGTGTGC 59.329 50.000 0.00 0.00 0.00 4.57
629 689 1.808411 AAAGATAGGGTGTGTGTGCG 58.192 50.000 0.00 0.00 0.00 5.34
630 690 0.673644 AAGATAGGGTGTGTGTGCGC 60.674 55.000 0.00 0.00 0.00 6.09
631 691 2.434185 ATAGGGTGTGTGTGCGCG 60.434 61.111 0.00 0.00 0.00 6.86
638 698 3.773630 GTGTGTGCGCGCGTGTAT 61.774 61.111 32.35 0.00 0.00 2.29
639 699 2.126424 TGTGTGCGCGCGTGTATA 60.126 55.556 32.35 12.80 0.00 1.47
640 700 1.517475 TGTGTGCGCGCGTGTATAT 60.517 52.632 32.35 0.00 0.00 0.86
641 701 1.084290 GTGTGCGCGCGTGTATATG 60.084 57.895 32.35 0.04 0.00 1.78
642 702 1.226717 TGTGCGCGCGTGTATATGA 60.227 52.632 32.35 1.38 0.00 2.15
643 703 1.206115 TGTGCGCGCGTGTATATGAG 61.206 55.000 32.35 0.00 0.00 2.90
644 704 2.300066 TGCGCGCGTGTATATGAGC 61.300 57.895 32.35 10.79 35.57 4.26
647 707 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
648 708 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
649 709 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
650 710 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
651 711 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
652 712 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
653 713 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
654 714 1.202359 TGTATATGAGCGCTTGCGTCA 60.202 47.619 13.26 16.86 45.69 4.35
655 715 1.858458 GTATATGAGCGCTTGCGTCAA 59.142 47.619 13.26 9.59 45.69 3.18
656 716 0.652592 ATATGAGCGCTTGCGTCAAC 59.347 50.000 13.26 0.00 45.69 3.18
657 717 0.669012 TATGAGCGCTTGCGTCAACA 60.669 50.000 13.26 1.67 45.69 3.33
658 718 2.127609 GAGCGCTTGCGTCAACAC 60.128 61.111 13.26 0.00 45.69 3.32
659 719 2.588877 AGCGCTTGCGTCAACACT 60.589 55.556 16.38 1.08 45.69 3.55
660 720 2.425773 GCGCTTGCGTCAACACTG 60.426 61.111 16.38 0.00 0.00 3.66
661 721 3.014036 CGCTTGCGTCAACACTGT 58.986 55.556 6.86 0.00 0.00 3.55
662 722 1.368019 CGCTTGCGTCAACACTGTG 60.368 57.895 6.19 6.19 0.00 3.66
663 723 1.721487 GCTTGCGTCAACACTGTGT 59.279 52.632 7.80 7.80 0.00 3.72
664 724 0.098728 GCTTGCGTCAACACTGTGTT 59.901 50.000 19.85 19.85 42.08 3.32
665 725 1.467374 GCTTGCGTCAACACTGTGTTT 60.467 47.619 22.66 6.62 38.77 2.83
666 726 2.223157 GCTTGCGTCAACACTGTGTTTA 60.223 45.455 22.66 13.18 38.77 2.01
667 727 3.729462 GCTTGCGTCAACACTGTGTTTAA 60.729 43.478 22.66 11.76 38.77 1.52
670 730 4.795268 TGCGTCAACACTGTGTTTAAAAA 58.205 34.783 22.66 7.15 38.77 1.94
799 938 1.965643 ACTACGTCTGTTAAGCCCACA 59.034 47.619 0.00 0.00 0.00 4.17
823 964 2.969821 AAACACCCACTAATCTGCCA 57.030 45.000 0.00 0.00 0.00 4.92
851 1010 1.295020 TATAAACCCCACAGCCAGCT 58.705 50.000 0.00 0.00 0.00 4.24
852 1011 1.295020 ATAAACCCCACAGCCAGCTA 58.705 50.000 0.00 0.00 0.00 3.32
853 1012 1.295020 TAAACCCCACAGCCAGCTAT 58.705 50.000 0.00 0.00 0.00 2.97
854 1013 0.323725 AAACCCCACAGCCAGCTATG 60.324 55.000 0.00 0.00 0.00 2.23
880 1039 1.269988 GCACACTCTGCTTCTCACTGA 60.270 52.381 0.00 0.00 43.33 3.41
929 1096 1.488705 CCAGCTAACACAGTCCCCCA 61.489 60.000 0.00 0.00 0.00 4.96
931 1098 1.837439 CAGCTAACACAGTCCCCCATA 59.163 52.381 0.00 0.00 0.00 2.74
932 1099 2.119495 AGCTAACACAGTCCCCCATAG 58.881 52.381 0.00 0.00 0.00 2.23
933 1100 1.141053 GCTAACACAGTCCCCCATAGG 59.859 57.143 0.00 0.00 0.00 2.57
934 1101 1.141053 CTAACACAGTCCCCCATAGGC 59.859 57.143 0.00 0.00 0.00 3.93
935 1102 1.571773 AACACAGTCCCCCATAGGCC 61.572 60.000 0.00 0.00 0.00 5.19
936 1103 2.368329 ACAGTCCCCCATAGGCCC 60.368 66.667 0.00 0.00 0.00 5.80
937 1104 3.560251 CAGTCCCCCATAGGCCCG 61.560 72.222 0.00 0.00 0.00 6.13
949 1130 2.898920 TAGGCCCGTACGTAGCAGCT 62.899 60.000 23.65 16.40 0.00 4.24
988 1202 2.793160 TACGTCGTCTCGGGTGAGCT 62.793 60.000 0.00 0.00 42.26 4.09
1005 1222 0.316522 GCTAGAGCAGATCGATGGCA 59.683 55.000 17.92 0.00 41.59 4.92
1139 4449 4.437390 GCTCCATGGATGACGTTTTACTTG 60.437 45.833 16.63 0.00 0.00 3.16
1322 4632 2.033757 CAGGCAGCACTTGGAGCT 59.966 61.111 0.00 0.00 44.62 4.09
1401 4725 2.328289 CGAGACGTCCGATGCGAT 59.672 61.111 13.01 0.00 0.00 4.58
1403 4727 0.041576 CGAGACGTCCGATGCGATAA 60.042 55.000 13.01 0.00 0.00 1.75
1404 4728 1.399855 CGAGACGTCCGATGCGATAAT 60.400 52.381 13.01 0.00 0.00 1.28
1405 4729 2.243407 GAGACGTCCGATGCGATAATC 58.757 52.381 13.01 0.00 0.00 1.75
1406 4730 1.068472 AGACGTCCGATGCGATAATCC 60.068 52.381 13.01 0.00 0.00 3.01
1407 4731 0.386858 ACGTCCGATGCGATAATCCG 60.387 55.000 0.00 0.00 0.00 4.18
1408 4732 0.109919 CGTCCGATGCGATAATCCGA 60.110 55.000 0.00 0.00 0.00 4.55
1410 4734 0.109272 TCCGATGCGATAATCCGAGC 60.109 55.000 0.00 0.00 0.00 5.03
1437 4797 2.473540 CGTCCACGTTCGTCAGTAGTAG 60.474 54.545 0.00 0.00 34.11 2.57
1438 4798 2.481952 GTCCACGTTCGTCAGTAGTAGT 59.518 50.000 0.00 0.00 0.00 2.73
1439 4799 3.679980 GTCCACGTTCGTCAGTAGTAGTA 59.320 47.826 0.00 0.00 0.00 1.82
1440 4800 3.679980 TCCACGTTCGTCAGTAGTAGTAC 59.320 47.826 0.00 0.00 0.00 2.73
1441 4801 3.681897 CCACGTTCGTCAGTAGTAGTACT 59.318 47.826 8.14 8.14 40.38 2.73
1442 4802 4.201666 CCACGTTCGTCAGTAGTAGTACTC 60.202 50.000 5.96 0.00 37.40 2.59
1443 4803 4.624882 CACGTTCGTCAGTAGTAGTACTCT 59.375 45.833 5.96 1.43 37.40 3.24
1444 4804 4.862018 ACGTTCGTCAGTAGTAGTACTCTC 59.138 45.833 5.96 1.83 37.40 3.20
1470 4850 4.029861 CGTATTTCTGTTCCGTGACGTTAG 59.970 45.833 3.64 0.00 0.00 2.34
1514 4895 5.359009 CCGTGTGTCCCTCTTAGTATAGAAA 59.641 44.000 0.00 0.00 0.00 2.52
1554 4945 5.009310 GTGGAAAACCAATCCGAGTTAGTTT 59.991 40.000 0.00 0.00 39.98 2.66
1556 4947 5.009310 GGAAAACCAATCCGAGTTAGTTTGT 59.991 40.000 0.00 0.00 0.00 2.83
1567 4973 3.537580 AGTTAGTTTGTTGAACGCCTGA 58.462 40.909 0.00 0.00 43.20 3.86
1605 5011 7.702386 TGTGTGTGGTGATGTAATAAATATGC 58.298 34.615 0.00 0.00 0.00 3.14
1607 5013 7.857389 GTGTGTGGTGATGTAATAAATATGCTG 59.143 37.037 0.00 0.00 0.00 4.41
1610 5016 7.228507 TGTGGTGATGTAATAAATATGCTGGTC 59.771 37.037 0.00 0.00 0.00 4.02
1647 5061 2.129146 ATGTGCAATGCATCCCCCG 61.129 57.895 12.38 0.00 41.91 5.73
1650 5065 2.124151 GCAATGCATCCCCCGTCT 60.124 61.111 0.00 0.00 0.00 4.18
1655 5070 0.692419 ATGCATCCCCCGTCTCTCTT 60.692 55.000 0.00 0.00 0.00 2.85
1753 5359 7.846644 TGAAGCTTTGTGAACATTTCATTTT 57.153 28.000 0.00 0.00 42.47 1.82
1754 5360 7.908230 TGAAGCTTTGTGAACATTTCATTTTC 58.092 30.769 0.00 0.00 42.47 2.29
1765 5371 9.421806 TGAACATTTCATTTTCATACATGAACC 57.578 29.630 0.00 0.00 39.44 3.62
1766 5372 9.421806 GAACATTTCATTTTCATACATGAACCA 57.578 29.630 0.00 0.00 45.63 3.67
1800 5406 6.743575 ATAAGTTGAGCATTACCTTGTCAC 57.256 37.500 0.00 0.00 0.00 3.67
1807 5413 5.592282 TGAGCATTACCTTGTCACAAAGAAA 59.408 36.000 0.00 0.00 0.00 2.52
1818 5424 6.339587 TGTCACAAAGAAACCAAGTTTTCT 57.660 33.333 0.00 0.00 45.84 2.52
1829 5435 3.748568 ACCAAGTTTTCTTTTTGCGCAAA 59.251 34.783 30.63 30.63 38.17 3.68
1872 5504 7.928307 AGAGCATAAAAGAGAGCATTAACAA 57.072 32.000 0.00 0.00 0.00 2.83
1880 5512 5.000012 AGAGAGCATTAACAAGAGTACGG 58.000 43.478 0.00 0.00 0.00 4.02
1937 5570 9.986833 GAAATTTTATGTGCATTGGGATTTTAC 57.013 29.630 0.00 0.00 0.00 2.01
1948 5581 6.627287 GCATTGGGATTTTACTAAACCTGGTC 60.627 42.308 0.00 0.00 0.00 4.02
1957 5590 4.976540 ACTAAACCTGGTCTACAAAGCT 57.023 40.909 0.00 0.00 0.00 3.74
1963 5597 6.819397 AACCTGGTCTACAAAGCTTATTTC 57.181 37.500 0.00 0.00 0.00 2.17
1988 5622 8.645110 TCCTACTTTTAATAAATACTCCCTCCG 58.355 37.037 0.00 0.00 0.00 4.63
1989 5623 8.427276 CCTACTTTTAATAAATACTCCCTCCGT 58.573 37.037 0.00 0.00 0.00 4.69
1990 5624 9.828039 CTACTTTTAATAAATACTCCCTCCGTT 57.172 33.333 0.00 0.00 0.00 4.44
1992 5626 9.170734 ACTTTTAATAAATACTCCCTCCGTTTC 57.829 33.333 0.00 0.00 0.00 2.78
1993 5627 9.392259 CTTTTAATAAATACTCCCTCCGTTTCT 57.608 33.333 0.00 0.00 0.00 2.52
1994 5628 9.743581 TTTTAATAAATACTCCCTCCGTTTCTT 57.256 29.630 0.00 0.00 0.00 2.52
1995 5629 9.743581 TTTAATAAATACTCCCTCCGTTTCTTT 57.256 29.630 0.00 0.00 0.00 2.52
1996 5630 9.743581 TTAATAAATACTCCCTCCGTTTCTTTT 57.256 29.630 0.00 0.00 0.00 2.27
1997 5631 8.645814 AATAAATACTCCCTCCGTTTCTTTTT 57.354 30.769 0.00 0.00 0.00 1.94
1998 5632 9.743581 AATAAATACTCCCTCCGTTTCTTTTTA 57.256 29.630 0.00 0.00 0.00 1.52
1999 5633 7.683437 AAATACTCCCTCCGTTTCTTTTTAG 57.317 36.000 0.00 0.00 0.00 1.85
2000 5634 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
2001 5635 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
2002 5636 4.001652 CTCCCTCCGTTTCTTTTTAGTCC 58.998 47.826 0.00 0.00 0.00 3.85
2003 5637 2.740447 CCCTCCGTTTCTTTTTAGTCCG 59.260 50.000 0.00 0.00 0.00 4.79
2004 5638 2.159037 CCTCCGTTTCTTTTTAGTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
2005 5639 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
2006 5640 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
2007 5641 4.567971 TCCGTTTCTTTTTAGTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
2008 5642 5.180271 TCCGTTTCTTTTTAGTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
2009 5643 6.339730 TCCGTTTCTTTTTAGTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
2010 5644 6.817641 TCCGTTTCTTTTTAGTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
2011 5645 7.010738 TCCGTTTCTTTTTAGTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
2012 5646 7.123830 CGTTTCTTTTTAGTCCGCATATAAGG 58.876 38.462 0.00 0.00 0.00 2.69
2013 5647 7.201582 CGTTTCTTTTTAGTCCGCATATAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
2014 5648 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
2015 5649 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
2016 5650 7.981142 TCTTTTTAGTCCGCATATAAGGTTTG 58.019 34.615 0.00 0.00 0.00 2.93
2017 5651 6.687081 TTTTAGTCCGCATATAAGGTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
2018 5652 3.926058 AGTCCGCATATAAGGTTTGGT 57.074 42.857 0.00 0.00 0.00 3.67
2019 5653 3.805207 AGTCCGCATATAAGGTTTGGTC 58.195 45.455 0.00 0.00 0.00 4.02
2020 5654 3.199071 AGTCCGCATATAAGGTTTGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
2021 5655 3.942748 GTCCGCATATAAGGTTTGGTCAA 59.057 43.478 0.00 0.00 0.00 3.18
2022 5656 4.396790 GTCCGCATATAAGGTTTGGTCAAA 59.603 41.667 0.00 0.00 0.00 2.69
2023 5657 5.010933 TCCGCATATAAGGTTTGGTCAAAA 58.989 37.500 0.00 0.00 31.33 2.44
2024 5658 5.654650 TCCGCATATAAGGTTTGGTCAAAAT 59.345 36.000 0.00 0.00 31.33 1.82
2025 5659 5.977129 CCGCATATAAGGTTTGGTCAAAATC 59.023 40.000 0.00 0.00 31.33 2.17
2026 5660 6.405286 CCGCATATAAGGTTTGGTCAAAATCA 60.405 38.462 0.00 0.00 30.61 2.57
2027 5661 7.032580 CGCATATAAGGTTTGGTCAAAATCAA 58.967 34.615 0.00 0.00 30.61 2.57
2028 5662 7.220683 CGCATATAAGGTTTGGTCAAAATCAAG 59.779 37.037 0.00 0.00 30.61 3.02
2029 5663 7.010460 GCATATAAGGTTTGGTCAAAATCAAGC 59.990 37.037 0.00 0.00 30.61 4.01
2030 5664 6.670695 ATAAGGTTTGGTCAAAATCAAGCT 57.329 33.333 0.00 0.00 30.61 3.74
2031 5665 5.357742 AAGGTTTGGTCAAAATCAAGCTT 57.642 34.783 0.00 0.00 30.61 3.74
2032 5666 5.357742 AGGTTTGGTCAAAATCAAGCTTT 57.642 34.783 0.00 0.00 30.61 3.51
2033 5667 5.118286 AGGTTTGGTCAAAATCAAGCTTTG 58.882 37.500 0.00 0.00 35.51 2.77
2034 5668 4.260743 GGTTTGGTCAAAATCAAGCTTTGC 60.261 41.667 0.00 0.00 34.43 3.68
2035 5669 3.815856 TGGTCAAAATCAAGCTTTGCA 57.184 38.095 0.00 0.00 34.43 4.08
2036 5670 4.339872 TGGTCAAAATCAAGCTTTGCAT 57.660 36.364 0.00 0.00 34.43 3.96
2037 5671 5.465532 TGGTCAAAATCAAGCTTTGCATA 57.534 34.783 0.00 0.00 34.43 3.14
2038 5672 5.472148 TGGTCAAAATCAAGCTTTGCATAG 58.528 37.500 0.00 0.00 34.43 2.23
2039 5673 5.010922 TGGTCAAAATCAAGCTTTGCATAGT 59.989 36.000 0.00 0.00 34.43 2.12
2040 5674 5.928264 GGTCAAAATCAAGCTTTGCATAGTT 59.072 36.000 0.00 0.00 34.43 2.24
2041 5675 6.424812 GGTCAAAATCAAGCTTTGCATAGTTT 59.575 34.615 0.00 3.26 34.43 2.66
2042 5676 7.285788 GTCAAAATCAAGCTTTGCATAGTTTG 58.714 34.615 21.89 21.89 37.60 2.93
2043 5677 7.169645 GTCAAAATCAAGCTTTGCATAGTTTGA 59.830 33.333 28.60 28.60 45.34 2.69
2044 5678 7.169645 TCAAAATCAAGCTTTGCATAGTTTGAC 59.830 33.333 28.87 4.93 44.50 3.18
2045 5679 5.972107 ATCAAGCTTTGCATAGTTTGACT 57.028 34.783 28.87 18.83 44.50 3.41
2046 5680 7.452880 AATCAAGCTTTGCATAGTTTGACTA 57.547 32.000 28.87 14.43 44.50 2.59
2047 5681 6.875948 TCAAGCTTTGCATAGTTTGACTAA 57.124 33.333 24.94 9.59 39.46 2.24
2048 5682 6.668323 TCAAGCTTTGCATAGTTTGACTAAC 58.332 36.000 24.94 0.00 39.46 2.34
2049 5683 7.175641 ATCAAGCTTTGCATAGTTTGACTAACT 59.824 33.333 28.87 15.95 44.50 2.24
2050 5684 6.884280 AGCTTTGCATAGTTTGACTAACTT 57.116 33.333 7.59 0.00 44.73 2.66
2051 5685 7.277174 AGCTTTGCATAGTTTGACTAACTTT 57.723 32.000 7.59 0.00 44.73 2.66
2052 5686 8.391075 AGCTTTGCATAGTTTGACTAACTTTA 57.609 30.769 7.59 0.00 44.73 1.85
2053 5687 9.014297 AGCTTTGCATAGTTTGACTAACTTTAT 57.986 29.630 7.59 0.00 44.73 1.40
2102 5736 9.878667 AATATGAAATCAACATTTTCAGATGCA 57.121 25.926 6.95 0.00 41.59 3.96
2103 5737 7.591006 ATGAAATCAACATTTTCAGATGCAC 57.409 32.000 0.00 0.00 43.96 4.57
2104 5738 5.927689 TGAAATCAACATTTTCAGATGCACC 59.072 36.000 0.00 0.00 37.97 5.01
2105 5739 5.471556 AATCAACATTTTCAGATGCACCA 57.528 34.783 0.00 0.00 0.00 4.17
2106 5740 5.670792 ATCAACATTTTCAGATGCACCAT 57.329 34.783 0.00 0.00 0.00 3.55
2107 5741 4.811908 TCAACATTTTCAGATGCACCATG 58.188 39.130 0.00 0.00 0.00 3.66
2108 5742 4.523558 TCAACATTTTCAGATGCACCATGA 59.476 37.500 0.00 0.00 0.00 3.07
2109 5743 5.010820 TCAACATTTTCAGATGCACCATGAA 59.989 36.000 6.08 6.08 0.00 2.57
2110 5744 5.471556 ACATTTTCAGATGCACCATGAAA 57.528 34.783 15.20 15.20 40.25 2.69
2111 5745 6.045072 ACATTTTCAGATGCACCATGAAAT 57.955 33.333 18.25 8.00 41.24 2.17
2112 5746 5.872617 ACATTTTCAGATGCACCATGAAATG 59.127 36.000 18.25 18.05 46.21 2.32
2113 5747 5.471556 TTTTCAGATGCACCATGAAATGT 57.528 34.783 18.25 0.00 44.81 2.71
2114 5748 6.587206 TTTTCAGATGCACCATGAAATGTA 57.413 33.333 18.25 6.36 44.81 2.29
2115 5749 6.778834 TTTCAGATGCACCATGAAATGTAT 57.221 33.333 15.20 0.00 44.81 2.29
2116 5750 6.778834 TTCAGATGCACCATGAAATGTATT 57.221 33.333 7.42 0.00 44.81 1.89
2117 5751 6.381481 TCAGATGCACCATGAAATGTATTC 57.619 37.500 0.00 0.00 44.81 1.75
2118 5752 6.124340 TCAGATGCACCATGAAATGTATTCT 58.876 36.000 0.00 0.00 44.81 2.40
2119 5753 6.261603 TCAGATGCACCATGAAATGTATTCTC 59.738 38.462 0.00 0.00 44.81 2.87
2120 5754 6.038936 CAGATGCACCATGAAATGTATTCTCA 59.961 38.462 0.00 0.00 44.81 3.27
2121 5755 6.776116 AGATGCACCATGAAATGTATTCTCAT 59.224 34.615 0.00 0.00 44.81 2.90
2122 5756 7.940688 AGATGCACCATGAAATGTATTCTCATA 59.059 33.333 0.00 0.00 44.81 2.15
2123 5757 7.878547 TGCACCATGAAATGTATTCTCATAA 57.121 32.000 0.00 0.00 44.81 1.90
2124 5758 8.467963 TGCACCATGAAATGTATTCTCATAAT 57.532 30.769 0.00 0.00 44.81 1.28
2125 5759 9.571816 TGCACCATGAAATGTATTCTCATAATA 57.428 29.630 0.00 0.00 44.81 0.98
2190 5824 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
2200 5834 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
2201 5835 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
2202 5836 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
2203 5837 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
2204 5838 6.576662 TGTGTAGTTTGACTTTGACCAAAA 57.423 33.333 0.00 0.00 34.52 2.44
2205 5839 6.383415 TGTGTAGTTTGACTTTGACCAAAAC 58.617 36.000 0.00 0.00 34.52 2.43
2206 5840 6.207810 TGTGTAGTTTGACTTTGACCAAAACT 59.792 34.615 4.69 4.69 34.52 2.66
2207 5841 7.088272 GTGTAGTTTGACTTTGACCAAAACTT 58.912 34.615 4.61 0.00 34.52 2.66
2208 5842 8.238631 GTGTAGTTTGACTTTGACCAAAACTTA 58.761 33.333 4.61 0.00 34.52 2.24
2209 5843 8.962679 TGTAGTTTGACTTTGACCAAAACTTAT 58.037 29.630 4.61 0.00 34.52 1.73
2212 5846 8.126700 AGTTTGACTTTGACCAAAACTTATACG 58.873 33.333 0.00 0.00 34.52 3.06
2213 5847 5.992729 TGACTTTGACCAAAACTTATACGC 58.007 37.500 0.00 0.00 0.00 4.42
2214 5848 5.025986 ACTTTGACCAAAACTTATACGCG 57.974 39.130 3.53 3.53 0.00 6.01
2215 5849 4.083696 ACTTTGACCAAAACTTATACGCGG 60.084 41.667 12.47 0.00 0.00 6.46
2216 5850 3.316071 TGACCAAAACTTATACGCGGA 57.684 42.857 12.47 0.00 0.00 5.54
2217 5851 3.255725 TGACCAAAACTTATACGCGGAG 58.744 45.455 12.47 5.24 0.00 4.63
2218 5852 3.256558 GACCAAAACTTATACGCGGAGT 58.743 45.455 12.47 5.94 0.00 3.85
2219 5853 4.082300 TGACCAAAACTTATACGCGGAGTA 60.082 41.667 12.47 0.00 40.03 2.59
2220 5854 5.014808 ACCAAAACTTATACGCGGAGTAT 57.985 39.130 12.47 9.33 46.90 2.12
2221 5855 4.807304 ACCAAAACTTATACGCGGAGTATG 59.193 41.667 12.47 10.91 45.10 2.39
2222 5856 4.807304 CCAAAACTTATACGCGGAGTATGT 59.193 41.667 12.47 5.78 45.10 2.29
2223 5857 5.051240 CCAAAACTTATACGCGGAGTATGTC 60.051 44.000 12.47 0.00 45.10 3.06
2224 5858 3.532892 ACTTATACGCGGAGTATGTCG 57.467 47.619 12.47 5.36 45.10 4.35
2225 5859 2.225019 ACTTATACGCGGAGTATGTCGG 59.775 50.000 12.47 4.77 45.10 4.79
2226 5860 1.159285 TATACGCGGAGTATGTCGGG 58.841 55.000 12.47 0.00 45.10 5.14
2227 5861 1.521450 ATACGCGGAGTATGTCGGGG 61.521 60.000 12.47 0.00 43.93 5.73
2228 5862 4.280494 CGCGGAGTATGTCGGGGG 62.280 72.222 0.00 0.00 35.49 5.40
2229 5863 3.152400 GCGGAGTATGTCGGGGGT 61.152 66.667 0.00 0.00 0.00 4.95
2230 5864 2.728435 GCGGAGTATGTCGGGGGTT 61.728 63.158 0.00 0.00 0.00 4.11
2231 5865 1.143183 CGGAGTATGTCGGGGGTTG 59.857 63.158 0.00 0.00 0.00 3.77
2232 5866 1.525442 GGAGTATGTCGGGGGTTGG 59.475 63.158 0.00 0.00 0.00 3.77
2233 5867 1.525442 GAGTATGTCGGGGGTTGGG 59.475 63.158 0.00 0.00 0.00 4.12
2234 5868 1.229723 AGTATGTCGGGGGTTGGGT 60.230 57.895 0.00 0.00 0.00 4.51
2235 5869 0.043032 AGTATGTCGGGGGTTGGGTA 59.957 55.000 0.00 0.00 0.00 3.69
2236 5870 0.178767 GTATGTCGGGGGTTGGGTAC 59.821 60.000 0.00 0.00 0.00 3.34
2237 5871 1.329171 TATGTCGGGGGTTGGGTACG 61.329 60.000 0.00 0.00 0.00 3.67
2238 5872 2.996734 GTCGGGGGTTGGGTACGA 60.997 66.667 0.00 0.00 0.00 3.43
2239 5873 2.996734 TCGGGGGTTGGGTACGAC 60.997 66.667 0.00 0.00 0.00 4.34
2240 5874 3.312718 CGGGGGTTGGGTACGACA 61.313 66.667 0.00 0.00 32.28 4.35
2241 5875 2.662070 CGGGGGTTGGGTACGACAT 61.662 63.158 0.00 0.00 32.28 3.06
2242 5876 1.329171 CGGGGGTTGGGTACGACATA 61.329 60.000 0.00 0.00 32.28 2.29
2243 5877 1.134228 GGGGGTTGGGTACGACATAT 58.866 55.000 0.00 0.00 32.28 1.78
2244 5878 1.202722 GGGGGTTGGGTACGACATATG 60.203 57.143 0.00 0.00 32.28 1.78
2245 5879 1.589803 GGGTTGGGTACGACATATGC 58.410 55.000 1.58 0.00 32.28 3.14
2246 5880 1.589803 GGTTGGGTACGACATATGCC 58.410 55.000 1.58 0.00 32.28 4.40
2247 5881 1.134340 GGTTGGGTACGACATATGCCA 60.134 52.381 1.58 0.00 32.28 4.92
2248 5882 2.634600 GTTGGGTACGACATATGCCAA 58.365 47.619 1.58 4.43 0.00 4.52
2249 5883 3.011119 GTTGGGTACGACATATGCCAAA 58.989 45.455 10.62 0.00 0.00 3.28
2250 5884 2.912771 TGGGTACGACATATGCCAAAG 58.087 47.619 1.58 0.00 0.00 2.77
2251 5885 2.218603 GGGTACGACATATGCCAAAGG 58.781 52.381 1.58 0.00 0.00 3.11
2252 5886 2.218603 GGTACGACATATGCCAAAGGG 58.781 52.381 1.58 0.00 37.18 3.95
2253 5887 2.420967 GGTACGACATATGCCAAAGGGT 60.421 50.000 1.58 0.00 36.17 4.34
2254 5888 1.750193 ACGACATATGCCAAAGGGTG 58.250 50.000 1.58 0.00 36.17 4.61
2265 5899 2.034124 CCAAAGGGTGGCTTATCATGG 58.966 52.381 0.00 0.00 41.72 3.66
2266 5900 2.624029 CCAAAGGGTGGCTTATCATGGT 60.624 50.000 0.00 0.00 41.72 3.55
2267 5901 2.428171 CAAAGGGTGGCTTATCATGGTG 59.572 50.000 0.00 0.00 0.00 4.17
2268 5902 0.552848 AGGGTGGCTTATCATGGTGG 59.447 55.000 0.00 0.00 0.00 4.61
2269 5903 0.468029 GGGTGGCTTATCATGGTGGG 60.468 60.000 0.00 0.00 0.00 4.61
2270 5904 0.468029 GGTGGCTTATCATGGTGGGG 60.468 60.000 0.00 0.00 0.00 4.96
2271 5905 0.468029 GTGGCTTATCATGGTGGGGG 60.468 60.000 0.00 0.00 0.00 5.40
2272 5906 1.531602 GGCTTATCATGGTGGGGGC 60.532 63.158 0.00 0.00 0.00 5.80
2273 5907 1.898574 GCTTATCATGGTGGGGGCG 60.899 63.158 0.00 0.00 0.00 6.13
2274 5908 1.836391 CTTATCATGGTGGGGGCGA 59.164 57.895 0.00 0.00 0.00 5.54
2275 5909 0.250467 CTTATCATGGTGGGGGCGAG 60.250 60.000 0.00 0.00 0.00 5.03
2276 5910 0.986019 TTATCATGGTGGGGGCGAGT 60.986 55.000 0.00 0.00 0.00 4.18
2277 5911 0.105401 TATCATGGTGGGGGCGAGTA 60.105 55.000 0.00 0.00 0.00 2.59
2278 5912 1.410850 ATCATGGTGGGGGCGAGTAG 61.411 60.000 0.00 0.00 0.00 2.57
2279 5913 2.063979 CATGGTGGGGGCGAGTAGA 61.064 63.158 0.00 0.00 0.00 2.59
2280 5914 1.306654 ATGGTGGGGGCGAGTAGAA 60.307 57.895 0.00 0.00 0.00 2.10
2281 5915 1.623542 ATGGTGGGGGCGAGTAGAAC 61.624 60.000 0.00 0.00 0.00 3.01
2282 5916 2.183555 GTGGGGGCGAGTAGAACG 59.816 66.667 0.00 0.00 0.00 3.95
2283 5917 2.283388 TGGGGGCGAGTAGAACGT 60.283 61.111 0.00 0.00 0.00 3.99
2284 5918 2.345760 TGGGGGCGAGTAGAACGTC 61.346 63.158 0.00 0.00 34.52 4.34
2285 5919 2.101770 GGGGCGAGTAGAACGTCG 59.898 66.667 0.00 0.00 39.25 5.12
2289 5923 2.277120 CGAGTAGAACGTCGCCGG 60.277 66.667 0.00 0.00 38.78 6.13
2290 5924 2.873288 GAGTAGAACGTCGCCGGT 59.127 61.111 1.90 0.00 38.78 5.28
2291 5925 1.513586 GAGTAGAACGTCGCCGGTG 60.514 63.158 9.28 9.28 38.78 4.94
2292 5926 3.177249 GTAGAACGTCGCCGGTGC 61.177 66.667 11.05 4.65 38.78 5.01
2293 5927 4.424566 TAGAACGTCGCCGGTGCC 62.425 66.667 11.05 0.00 38.78 5.01
2310 5944 4.918201 CCGGAAGCGGGATGAGGC 62.918 72.222 0.00 0.00 0.00 4.70
2312 5946 3.849951 GGAAGCGGGATGAGGCGA 61.850 66.667 0.00 0.00 0.00 5.54
2313 5947 2.186903 GAAGCGGGATGAGGCGAA 59.813 61.111 0.00 0.00 0.00 4.70
2314 5948 1.884926 GAAGCGGGATGAGGCGAAG 60.885 63.158 0.00 0.00 0.00 3.79
2315 5949 2.298158 GAAGCGGGATGAGGCGAAGA 62.298 60.000 0.00 0.00 0.00 2.87
2316 5950 2.579684 AAGCGGGATGAGGCGAAGAC 62.580 60.000 0.00 0.00 0.00 3.01
2317 5951 2.892640 CGGGATGAGGCGAAGACA 59.107 61.111 0.00 0.00 39.87 3.41
2318 5952 1.443407 CGGGATGAGGCGAAGACAT 59.557 57.895 0.00 0.00 39.87 3.06
2319 5953 0.877649 CGGGATGAGGCGAAGACATG 60.878 60.000 0.00 0.00 39.87 3.21
2320 5954 1.162800 GGGATGAGGCGAAGACATGC 61.163 60.000 0.00 0.00 39.87 4.06
2321 5955 0.462581 GGATGAGGCGAAGACATGCA 60.463 55.000 0.00 0.00 39.87 3.96
2322 5956 0.654683 GATGAGGCGAAGACATGCAC 59.345 55.000 0.00 0.00 39.87 4.57
2323 5957 1.086067 ATGAGGCGAAGACATGCACG 61.086 55.000 0.00 0.00 39.87 5.34
2324 5958 3.088500 GAGGCGAAGACATGCACGC 62.089 63.158 8.46 8.46 39.87 5.34
2326 5960 4.505217 GCGAAGACATGCACGCCG 62.505 66.667 5.89 8.38 44.27 6.46
2327 5961 3.853330 CGAAGACATGCACGCCGG 61.853 66.667 0.00 0.00 0.00 6.13
2328 5962 4.166011 GAAGACATGCACGCCGGC 62.166 66.667 19.07 19.07 0.00 6.13
2339 5973 4.963428 CGCCGGCGGATCTTACCC 62.963 72.222 40.50 8.12 35.56 3.69
2340 5974 3.857038 GCCGGCGGATCTTACCCA 61.857 66.667 33.44 0.00 0.00 4.51
2341 5975 2.421739 CCGGCGGATCTTACCCAG 59.578 66.667 24.41 0.00 0.00 4.45
2342 5976 2.280186 CGGCGGATCTTACCCAGC 60.280 66.667 0.00 0.00 0.00 4.85
2343 5977 2.797278 CGGCGGATCTTACCCAGCT 61.797 63.158 0.00 0.00 0.00 4.24
2344 5978 1.527370 GGCGGATCTTACCCAGCTT 59.473 57.895 0.00 0.00 0.00 3.74
2345 5979 0.533085 GGCGGATCTTACCCAGCTTC 60.533 60.000 0.00 0.00 0.00 3.86
2346 5980 0.178068 GCGGATCTTACCCAGCTTCA 59.822 55.000 0.00 0.00 0.00 3.02
2347 5981 1.808133 GCGGATCTTACCCAGCTTCAG 60.808 57.143 0.00 0.00 0.00 3.02
2348 5982 1.202580 CGGATCTTACCCAGCTTCAGG 60.203 57.143 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.479660 GTGCTAGAGGATGAAGAATCAAAGAG 59.520 42.308 0.00 0.00 39.49 2.85
62 63 5.049886 CCGTTGGGTAAGAAGTAACAAAGAC 60.050 44.000 0.00 0.00 0.00 3.01
127 128 9.766277 GCTTCATGTTTTAAATTTTGACAAACA 57.234 25.926 14.72 14.72 40.60 2.83
129 130 9.985318 CAGCTTCATGTTTTAAATTTTGACAAA 57.015 25.926 0.00 0.00 0.00 2.83
141 142 9.462174 CATTTAAACTCACAGCTTCATGTTTTA 57.538 29.630 9.08 0.45 0.00 1.52
190 191 5.767269 TGAAAACAACGAACATGCATGTAT 58.233 33.333 31.55 20.92 40.80 2.29
208 209 9.391006 ACTCTTAAATATTCGGCTACATGAAAA 57.609 29.630 0.00 0.00 0.00 2.29
336 338 3.160269 ACAGCTGGATTCCCTTTCAAAG 58.840 45.455 19.93 0.00 0.00 2.77
358 360 3.970410 CAGGCAGGCCAAGGACCA 61.970 66.667 13.63 0.00 38.92 4.02
441 449 1.303317 GAGTGGCCATTTCACGGGT 60.303 57.895 9.72 0.00 39.86 5.28
532 557 2.359214 TCTCGTACTAATGCAGAGCAGG 59.641 50.000 0.00 0.00 43.65 4.85
543 568 1.064166 CCTCCCCTGGTCTCGTACTAA 60.064 57.143 0.00 0.00 0.00 2.24
556 590 1.847968 CCCAGTTGACACCTCCCCT 60.848 63.158 0.00 0.00 0.00 4.79
601 658 2.190981 CACCCTATCTTTACGTCGTGC 58.809 52.381 8.47 0.00 0.00 5.34
608 668 2.671396 CGCACACACACCCTATCTTTAC 59.329 50.000 0.00 0.00 0.00 2.01
612 672 1.079127 GCGCACACACACCCTATCT 60.079 57.895 0.30 0.00 0.00 1.98
613 673 2.452813 CGCGCACACACACCCTATC 61.453 63.158 8.75 0.00 0.00 2.08
614 674 2.434185 CGCGCACACACACCCTAT 60.434 61.111 8.75 0.00 0.00 2.57
621 681 1.748647 ATATACACGCGCGCACACAC 61.749 55.000 32.58 0.00 0.00 3.82
622 682 1.517475 ATATACACGCGCGCACACA 60.517 52.632 32.58 13.47 0.00 3.72
623 683 1.084290 CATATACACGCGCGCACAC 60.084 57.895 32.58 0.72 0.00 3.82
624 684 1.206115 CTCATATACACGCGCGCACA 61.206 55.000 32.58 15.55 0.00 4.57
625 685 1.482955 CTCATATACACGCGCGCAC 59.517 57.895 32.58 2.05 0.00 5.34
626 686 2.300066 GCTCATATACACGCGCGCA 61.300 57.895 32.58 16.40 0.00 6.09
627 687 2.465920 GCTCATATACACGCGCGC 59.534 61.111 32.58 23.91 0.00 6.86
628 688 2.756964 CGCTCATATACACGCGCG 59.243 61.111 30.96 30.96 39.11 6.86
632 692 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
633 693 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
634 694 1.202359 TGACGCAAGCGCTCATATACA 60.202 47.619 12.06 4.64 44.19 2.29
635 695 1.487482 TGACGCAAGCGCTCATATAC 58.513 50.000 12.06 1.70 44.19 1.47
636 696 1.858458 GTTGACGCAAGCGCTCATATA 59.142 47.619 12.06 0.00 44.19 0.86
637 697 0.652592 GTTGACGCAAGCGCTCATAT 59.347 50.000 12.06 0.00 44.19 1.78
638 698 0.669012 TGTTGACGCAAGCGCTCATA 60.669 50.000 12.06 7.21 44.19 2.15
639 699 1.960763 TGTTGACGCAAGCGCTCAT 60.961 52.632 12.06 0.00 44.19 2.90
640 700 2.587473 TGTTGACGCAAGCGCTCA 60.587 55.556 12.06 13.84 44.19 4.26
641 701 2.127609 GTGTTGACGCAAGCGCTC 60.128 61.111 12.06 11.50 44.19 5.03
642 702 2.588877 AGTGTTGACGCAAGCGCT 60.589 55.556 15.09 2.64 44.19 5.92
643 703 2.425773 CAGTGTTGACGCAAGCGC 60.426 61.111 15.09 0.00 44.19 5.92
644 704 1.368019 CACAGTGTTGACGCAAGCG 60.368 57.895 13.50 13.50 46.03 4.68
645 705 0.098728 AACACAGTGTTGACGCAAGC 59.901 50.000 18.49 0.00 39.45 4.01
646 706 2.542766 AAACACAGTGTTGACGCAAG 57.457 45.000 19.84 0.00 40.14 4.01
647 707 4.421033 TTTAAACACAGTGTTGACGCAA 57.579 36.364 19.84 1.09 40.14 4.85
648 708 4.421033 TTTTAAACACAGTGTTGACGCA 57.579 36.364 19.84 0.97 40.14 5.24
685 745 1.459450 TCCAAAAGTAGCGGGCATTC 58.541 50.000 0.00 0.00 0.00 2.67
693 753 9.736023 ATAAATTCATTCGATTCCAAAAGTAGC 57.264 29.630 0.00 0.00 0.00 3.58
799 938 5.777732 TGGCAGATTAGTGGGTGTTTAATTT 59.222 36.000 0.00 0.00 0.00 1.82
823 964 4.263506 GCTGTGGGGTTTATATAGGCAGAT 60.264 45.833 0.00 0.00 0.00 2.90
851 1010 1.603842 CAGAGTGTGCTGGCCCATA 59.396 57.895 0.00 0.00 32.26 2.74
852 1011 2.353958 CAGAGTGTGCTGGCCCAT 59.646 61.111 0.00 0.00 32.26 4.00
861 1020 2.808523 TCAGTGAGAAGCAGAGTGTG 57.191 50.000 0.00 0.00 0.00 3.82
862 1021 2.612471 GCATCAGTGAGAAGCAGAGTGT 60.612 50.000 0.00 0.00 40.56 3.55
880 1039 1.202855 CGAATGGAGGAGAATGGGCAT 60.203 52.381 0.00 0.00 0.00 4.40
911 1074 0.620556 ATGGGGGACTGTGTTAGCTG 59.379 55.000 0.00 0.00 0.00 4.24
929 1096 1.803366 GCTGCTACGTACGGGCCTAT 61.803 60.000 24.83 6.11 0.00 2.57
931 1098 3.834799 GCTGCTACGTACGGGCCT 61.835 66.667 24.83 7.11 0.00 5.19
932 1099 3.834799 AGCTGCTACGTACGGGCC 61.835 66.667 24.83 14.72 0.00 5.80
933 1100 2.582498 CAGCTGCTACGTACGGGC 60.582 66.667 21.06 21.87 0.00 6.13
934 1101 2.582498 GCAGCTGCTACGTACGGG 60.582 66.667 31.33 12.81 38.21 5.28
935 1102 1.874019 CTGCAGCTGCTACGTACGG 60.874 63.158 36.61 9.86 42.66 4.02
936 1103 1.874019 CCTGCAGCTGCTACGTACG 60.874 63.158 36.61 15.01 42.66 3.67
937 1104 0.103208 ATCCTGCAGCTGCTACGTAC 59.897 55.000 36.61 9.26 42.66 3.67
949 1130 1.062886 ACTGGACCTAGCTATCCTGCA 60.063 52.381 16.25 4.09 37.43 4.41
961 1155 1.018226 CGAGACGACGTACTGGACCT 61.018 60.000 0.00 0.00 0.00 3.85
988 1202 1.611006 GAGTGCCATCGATCTGCTCTA 59.389 52.381 16.64 0.00 0.00 2.43
1005 1222 2.492090 GCCATGCGACGAGAGAGT 59.508 61.111 0.00 0.00 0.00 3.24
1077 4361 0.616111 GGGAAGAGTGAGAGGCTGGA 60.616 60.000 0.00 0.00 0.00 3.86
1139 4449 2.223782 TGCACATCAAAGAAACCACAGC 60.224 45.455 0.00 0.00 0.00 4.40
1399 4723 2.846918 GCACGCGCTCGGATTATC 59.153 61.111 5.73 0.00 40.69 1.75
1401 4725 4.485834 ACGCACGCGCTCGGATTA 62.486 61.111 21.47 0.00 44.19 1.75
1437 4797 5.738225 CGGAACAGAAATACGAAGAGAGTAC 59.262 44.000 0.00 0.00 0.00 2.73
1438 4798 5.413833 ACGGAACAGAAATACGAAGAGAGTA 59.586 40.000 0.00 0.00 0.00 2.59
1439 4799 4.217983 ACGGAACAGAAATACGAAGAGAGT 59.782 41.667 0.00 0.00 0.00 3.24
1440 4800 4.559251 CACGGAACAGAAATACGAAGAGAG 59.441 45.833 0.00 0.00 0.00 3.20
1441 4801 4.216902 TCACGGAACAGAAATACGAAGAGA 59.783 41.667 0.00 0.00 0.00 3.10
1442 4802 4.323868 GTCACGGAACAGAAATACGAAGAG 59.676 45.833 0.00 0.00 0.00 2.85
1443 4803 4.232221 GTCACGGAACAGAAATACGAAGA 58.768 43.478 0.00 0.00 0.00 2.87
1444 4804 3.059044 CGTCACGGAACAGAAATACGAAG 59.941 47.826 0.00 0.00 0.00 3.79
1470 4850 2.987821 GGACGAACAGAACAGAACTAGC 59.012 50.000 0.00 0.00 0.00 3.42
1532 4913 5.009310 ACAAACTAACTCGGATTGGTTTTCC 59.991 40.000 10.01 0.00 40.16 3.13
1544 4925 2.542595 AGGCGTTCAACAAACTAACTCG 59.457 45.455 0.00 0.00 35.59 4.18
1554 4945 0.310543 GCACAATCAGGCGTTCAACA 59.689 50.000 0.00 0.00 0.00 3.33
1556 4947 0.537143 AGGCACAATCAGGCGTTCAA 60.537 50.000 0.00 0.00 36.55 2.69
1567 4973 2.036217 CCACACACAAATCAGGCACAAT 59.964 45.455 0.00 0.00 0.00 2.71
1605 5011 2.361119 CCATCCATGCTGAAATGACCAG 59.639 50.000 0.00 0.00 34.88 4.00
1607 5013 2.360165 GTCCATCCATGCTGAAATGACC 59.640 50.000 0.00 0.00 0.00 4.02
1610 5016 3.383505 ACATGTCCATCCATGCTGAAATG 59.616 43.478 0.00 0.00 44.88 2.32
1655 5070 9.810545 TGAACACGATCATATTTACACATAGAA 57.189 29.630 0.00 0.00 0.00 2.10
1729 5335 7.548427 TGAAAATGAAATGTTCACAAAGCTTCA 59.452 29.630 0.00 0.00 42.75 3.02
1807 5413 2.966050 TGCGCAAAAAGAAAACTTGGT 58.034 38.095 8.16 0.00 0.00 3.67
1835 5441 9.736023 CTCTTTTATGCTCTACTTTGTTTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
1836 5442 9.950680 TCTCTTTTATGCTCTACTTTGTTTTTG 57.049 29.630 0.00 0.00 0.00 2.44
1838 5444 8.293157 GCTCTCTTTTATGCTCTACTTTGTTTT 58.707 33.333 0.00 0.00 0.00 2.43
1839 5445 7.445402 TGCTCTCTTTTATGCTCTACTTTGTTT 59.555 33.333 0.00 0.00 0.00 2.83
1858 5490 4.705507 TCCGTACTCTTGTTAATGCTCTCT 59.294 41.667 0.00 0.00 0.00 3.10
1872 5504 6.585695 TGAGTAAAACAAGATCCGTACTCT 57.414 37.500 12.21 0.00 38.70 3.24
1886 5518 8.653338 TCGCACAAGATAGTTTATGAGTAAAAC 58.347 33.333 0.00 0.00 37.14 2.43
1907 5539 4.201705 CCCAATGCACATAAAATTTCGCAC 60.202 41.667 0.00 0.00 31.22 5.34
1937 5570 7.923414 AATAAGCTTTGTAGACCAGGTTTAG 57.077 36.000 3.20 0.00 30.99 1.85
1963 5597 8.427276 ACGGAGGGAGTATTTATTAAAAGTAGG 58.573 37.037 0.00 0.00 0.00 3.18
1973 5607 9.392259 CTAAAAAGAAACGGAGGGAGTATTTAT 57.608 33.333 0.00 0.00 0.00 1.40
1980 5614 4.001652 GGACTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
1981 5615 3.555586 CGGACTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
1982 5616 2.740447 CGGACTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
1983 5617 2.159037 GCGGACTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
1984 5618 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
1985 5619 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
1986 5620 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
1987 5621 7.123830 CCTTATATGCGGACTAAAAAGAAACG 58.876 38.462 0.00 0.00 0.00 3.60
1988 5622 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
1989 5623 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
1990 5624 8.455682 CAAACCTTATATGCGGACTAAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
1991 5625 7.066525 CCAAACCTTATATGCGGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
1992 5626 7.148137 ACCAAACCTTATATGCGGACTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
1993 5627 6.660094 ACCAAACCTTATATGCGGACTAAAAA 59.340 34.615 0.00 0.00 0.00 1.94
1994 5628 6.181908 ACCAAACCTTATATGCGGACTAAAA 58.818 36.000 0.00 0.00 0.00 1.52
1995 5629 5.747342 ACCAAACCTTATATGCGGACTAAA 58.253 37.500 0.00 0.00 0.00 1.85
1996 5630 5.104859 TGACCAAACCTTATATGCGGACTAA 60.105 40.000 0.00 0.00 0.00 2.24
1997 5631 4.406326 TGACCAAACCTTATATGCGGACTA 59.594 41.667 0.00 0.00 0.00 2.59
1998 5632 3.199071 TGACCAAACCTTATATGCGGACT 59.801 43.478 0.00 0.00 0.00 3.85
1999 5633 3.537580 TGACCAAACCTTATATGCGGAC 58.462 45.455 0.00 0.00 0.00 4.79
2000 5634 3.916359 TGACCAAACCTTATATGCGGA 57.084 42.857 0.00 0.00 0.00 5.54
2001 5635 4.974368 TTTGACCAAACCTTATATGCGG 57.026 40.909 0.00 0.00 0.00 5.69
2002 5636 6.559810 TGATTTTGACCAAACCTTATATGCG 58.440 36.000 0.00 0.00 0.00 4.73
2003 5637 7.010460 GCTTGATTTTGACCAAACCTTATATGC 59.990 37.037 0.00 0.00 0.00 3.14
2004 5638 8.253113 AGCTTGATTTTGACCAAACCTTATATG 58.747 33.333 0.00 0.00 0.00 1.78
2005 5639 8.366359 AGCTTGATTTTGACCAAACCTTATAT 57.634 30.769 0.00 0.00 0.00 0.86
2006 5640 7.775053 AGCTTGATTTTGACCAAACCTTATA 57.225 32.000 0.00 0.00 0.00 0.98
2007 5641 6.670695 AGCTTGATTTTGACCAAACCTTAT 57.329 33.333 0.00 0.00 0.00 1.73
2008 5642 6.478512 AAGCTTGATTTTGACCAAACCTTA 57.521 33.333 0.00 0.00 0.00 2.69
2009 5643 5.357742 AAGCTTGATTTTGACCAAACCTT 57.642 34.783 0.00 0.00 0.00 3.50
2010 5644 5.118286 CAAAGCTTGATTTTGACCAAACCT 58.882 37.500 0.00 0.00 37.65 3.50
2011 5645 4.260743 GCAAAGCTTGATTTTGACCAAACC 60.261 41.667 0.00 0.00 37.65 3.27
2012 5646 4.332268 TGCAAAGCTTGATTTTGACCAAAC 59.668 37.500 0.00 0.00 37.65 2.93
2013 5647 4.511527 TGCAAAGCTTGATTTTGACCAAA 58.488 34.783 0.00 0.00 37.65 3.28
2014 5648 4.134379 TGCAAAGCTTGATTTTGACCAA 57.866 36.364 0.00 0.00 37.65 3.67
2015 5649 3.815856 TGCAAAGCTTGATTTTGACCA 57.184 38.095 0.00 0.00 37.65 4.02
2016 5650 5.473039 ACTATGCAAAGCTTGATTTTGACC 58.527 37.500 0.00 0.00 37.65 4.02
2017 5651 7.169645 TCAAACTATGCAAAGCTTGATTTTGAC 59.830 33.333 0.00 0.00 37.65 3.18
2018 5652 7.169645 GTCAAACTATGCAAAGCTTGATTTTGA 59.830 33.333 0.00 6.19 37.65 2.69
2019 5653 7.170320 AGTCAAACTATGCAAAGCTTGATTTTG 59.830 33.333 0.00 3.96 34.90 2.44
2020 5654 7.212274 AGTCAAACTATGCAAAGCTTGATTTT 58.788 30.769 0.00 0.00 34.90 1.82
2021 5655 6.752168 AGTCAAACTATGCAAAGCTTGATTT 58.248 32.000 0.00 0.00 34.90 2.17
2022 5656 6.336842 AGTCAAACTATGCAAAGCTTGATT 57.663 33.333 0.00 0.00 34.90 2.57
2023 5657 5.972107 AGTCAAACTATGCAAAGCTTGAT 57.028 34.783 0.00 0.00 34.90 2.57
2024 5658 6.486657 AGTTAGTCAAACTATGCAAAGCTTGA 59.513 34.615 0.00 0.00 46.85 3.02
2025 5659 6.672147 AGTTAGTCAAACTATGCAAAGCTTG 58.328 36.000 0.00 0.00 46.85 4.01
2026 5660 6.884280 AGTTAGTCAAACTATGCAAAGCTT 57.116 33.333 0.00 0.00 46.85 3.74
2076 5710 9.878667 TGCATCTGAAAATGTTGATTTCATATT 57.121 25.926 2.54 0.00 43.61 1.28
2077 5711 9.309516 GTGCATCTGAAAATGTTGATTTCATAT 57.690 29.630 0.00 0.00 43.61 1.78
2078 5712 7.760794 GGTGCATCTGAAAATGTTGATTTCATA 59.239 33.333 0.00 0.00 43.61 2.15
2079 5713 6.592607 GGTGCATCTGAAAATGTTGATTTCAT 59.407 34.615 0.00 0.00 43.61 2.57
2080 5714 5.927689 GGTGCATCTGAAAATGTTGATTTCA 59.072 36.000 0.00 2.19 42.73 2.69
2081 5715 5.927689 TGGTGCATCTGAAAATGTTGATTTC 59.072 36.000 0.00 0.00 37.31 2.17
2082 5716 5.856156 TGGTGCATCTGAAAATGTTGATTT 58.144 33.333 0.00 0.00 32.87 2.17
2083 5717 5.471556 TGGTGCATCTGAAAATGTTGATT 57.528 34.783 0.00 0.00 0.00 2.57
2084 5718 5.186215 TCATGGTGCATCTGAAAATGTTGAT 59.814 36.000 0.00 0.00 0.00 2.57
2085 5719 4.523558 TCATGGTGCATCTGAAAATGTTGA 59.476 37.500 0.00 0.00 0.00 3.18
2086 5720 4.811908 TCATGGTGCATCTGAAAATGTTG 58.188 39.130 0.00 0.00 0.00 3.33
2087 5721 5.471556 TTCATGGTGCATCTGAAAATGTT 57.528 34.783 8.75 0.00 0.00 2.71
2088 5722 5.471556 TTTCATGGTGCATCTGAAAATGT 57.528 34.783 17.00 0.00 36.30 2.71
2089 5723 5.872617 ACATTTCATGGTGCATCTGAAAATG 59.127 36.000 20.79 20.53 40.94 2.32
2090 5724 6.045072 ACATTTCATGGTGCATCTGAAAAT 57.955 33.333 20.79 13.30 40.94 1.82
2091 5725 5.471556 ACATTTCATGGTGCATCTGAAAA 57.528 34.783 20.79 9.93 40.94 2.29
2092 5726 6.778834 ATACATTTCATGGTGCATCTGAAA 57.221 33.333 19.82 19.82 41.57 2.69
2093 5727 6.604396 AGAATACATTTCATGGTGCATCTGAA 59.396 34.615 0.00 3.14 33.60 3.02
2094 5728 6.124340 AGAATACATTTCATGGTGCATCTGA 58.876 36.000 0.00 0.00 33.60 3.27
2095 5729 6.038936 TGAGAATACATTTCATGGTGCATCTG 59.961 38.462 0.00 0.00 33.60 2.90
2096 5730 6.124340 TGAGAATACATTTCATGGTGCATCT 58.876 36.000 0.00 0.00 33.60 2.90
2097 5731 6.381481 TGAGAATACATTTCATGGTGCATC 57.619 37.500 0.00 0.00 33.60 3.91
2098 5732 6.971726 ATGAGAATACATTTCATGGTGCAT 57.028 33.333 0.00 0.00 30.76 3.96
2099 5733 7.878547 TTATGAGAATACATTTCATGGTGCA 57.121 32.000 0.00 0.00 33.81 4.57
2164 5798 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
2165 5799 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
2176 5810 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
2177 5811 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
2178 5812 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
2179 5813 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
2180 5814 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
2181 5815 6.207810 AGTTTTGGTCAAAGTCAAACTACACA 59.792 34.615 0.00 0.00 33.29 3.72
2182 5816 6.617879 AGTTTTGGTCAAAGTCAAACTACAC 58.382 36.000 0.00 0.00 33.29 2.90
2183 5817 6.827586 AGTTTTGGTCAAAGTCAAACTACA 57.172 33.333 0.00 0.00 33.29 2.74
2186 5820 8.126700 CGTATAAGTTTTGGTCAAAGTCAAACT 58.873 33.333 0.00 0.00 33.29 2.66
2187 5821 7.096763 GCGTATAAGTTTTGGTCAAAGTCAAAC 60.097 37.037 0.00 0.00 33.29 2.93
2188 5822 6.913673 GCGTATAAGTTTTGGTCAAAGTCAAA 59.086 34.615 0.00 0.00 0.00 2.69
2189 5823 6.432107 GCGTATAAGTTTTGGTCAAAGTCAA 58.568 36.000 0.00 0.00 0.00 3.18
2190 5824 5.333492 CGCGTATAAGTTTTGGTCAAAGTCA 60.333 40.000 0.00 0.00 0.00 3.41
2191 5825 5.077424 CGCGTATAAGTTTTGGTCAAAGTC 58.923 41.667 0.00 0.00 0.00 3.01
2192 5826 4.083696 CCGCGTATAAGTTTTGGTCAAAGT 60.084 41.667 4.92 0.00 0.00 2.66
2193 5827 4.152759 TCCGCGTATAAGTTTTGGTCAAAG 59.847 41.667 4.92 0.00 0.00 2.77
2194 5828 4.063689 TCCGCGTATAAGTTTTGGTCAAA 58.936 39.130 4.92 0.00 0.00 2.69
2195 5829 3.661944 TCCGCGTATAAGTTTTGGTCAA 58.338 40.909 4.92 0.00 0.00 3.18
2196 5830 3.255725 CTCCGCGTATAAGTTTTGGTCA 58.744 45.455 4.92 0.00 0.00 4.02
2197 5831 3.256558 ACTCCGCGTATAAGTTTTGGTC 58.743 45.455 4.92 0.00 0.00 4.02
2198 5832 3.323751 ACTCCGCGTATAAGTTTTGGT 57.676 42.857 4.92 0.00 0.00 3.67
2199 5833 4.807304 ACATACTCCGCGTATAAGTTTTGG 59.193 41.667 4.92 0.00 36.69 3.28
2200 5834 5.331309 CGACATACTCCGCGTATAAGTTTTG 60.331 44.000 4.92 7.18 36.69 2.44
2201 5835 4.736793 CGACATACTCCGCGTATAAGTTTT 59.263 41.667 4.92 0.00 36.69 2.43
2202 5836 4.285292 CGACATACTCCGCGTATAAGTTT 58.715 43.478 4.92 0.00 36.69 2.66
2203 5837 3.304257 CCGACATACTCCGCGTATAAGTT 60.304 47.826 4.92 0.00 36.69 2.66
2204 5838 2.225019 CCGACATACTCCGCGTATAAGT 59.775 50.000 4.92 5.65 36.69 2.24
2205 5839 2.413765 CCCGACATACTCCGCGTATAAG 60.414 54.545 4.92 0.00 36.69 1.73
2206 5840 1.536766 CCCGACATACTCCGCGTATAA 59.463 52.381 4.92 0.00 36.69 0.98
2207 5841 1.159285 CCCGACATACTCCGCGTATA 58.841 55.000 4.92 0.00 36.69 1.47
2208 5842 1.521450 CCCCGACATACTCCGCGTAT 61.521 60.000 4.92 0.00 39.39 3.06
2209 5843 2.188829 CCCCGACATACTCCGCGTA 61.189 63.158 4.92 0.00 0.00 4.42
2210 5844 3.524606 CCCCGACATACTCCGCGT 61.525 66.667 4.92 0.00 0.00 6.01
2211 5845 4.280494 CCCCCGACATACTCCGCG 62.280 72.222 0.00 0.00 0.00 6.46
2212 5846 2.728435 AACCCCCGACATACTCCGC 61.728 63.158 0.00 0.00 0.00 5.54
2213 5847 1.143183 CAACCCCCGACATACTCCG 59.857 63.158 0.00 0.00 0.00 4.63
2214 5848 1.525442 CCAACCCCCGACATACTCC 59.475 63.158 0.00 0.00 0.00 3.85
2215 5849 1.269703 ACCCAACCCCCGACATACTC 61.270 60.000 0.00 0.00 0.00 2.59
2216 5850 0.043032 TACCCAACCCCCGACATACT 59.957 55.000 0.00 0.00 0.00 2.12
2217 5851 0.178767 GTACCCAACCCCCGACATAC 59.821 60.000 0.00 0.00 0.00 2.39
2218 5852 1.329171 CGTACCCAACCCCCGACATA 61.329 60.000 0.00 0.00 0.00 2.29
2219 5853 2.662070 CGTACCCAACCCCCGACAT 61.662 63.158 0.00 0.00 0.00 3.06
2220 5854 3.312718 CGTACCCAACCCCCGACA 61.313 66.667 0.00 0.00 0.00 4.35
2221 5855 2.996734 TCGTACCCAACCCCCGAC 60.997 66.667 0.00 0.00 0.00 4.79
2222 5856 2.996734 GTCGTACCCAACCCCCGA 60.997 66.667 0.00 0.00 0.00 5.14
2223 5857 1.329171 TATGTCGTACCCAACCCCCG 61.329 60.000 0.00 0.00 0.00 5.73
2224 5858 1.134228 ATATGTCGTACCCAACCCCC 58.866 55.000 0.00 0.00 0.00 5.40
2225 5859 1.812708 GCATATGTCGTACCCAACCCC 60.813 57.143 4.29 0.00 0.00 4.95
2226 5860 1.589803 GCATATGTCGTACCCAACCC 58.410 55.000 4.29 0.00 0.00 4.11
2227 5861 1.134340 TGGCATATGTCGTACCCAACC 60.134 52.381 2.28 0.00 0.00 3.77
2228 5862 2.319136 TGGCATATGTCGTACCCAAC 57.681 50.000 2.28 0.00 0.00 3.77
2229 5863 3.275143 CTTTGGCATATGTCGTACCCAA 58.725 45.455 2.28 4.61 0.00 4.12
2230 5864 2.420827 CCTTTGGCATATGTCGTACCCA 60.421 50.000 2.28 0.00 0.00 4.51
2231 5865 2.218603 CCTTTGGCATATGTCGTACCC 58.781 52.381 2.28 0.00 0.00 3.69
2232 5866 2.218603 CCCTTTGGCATATGTCGTACC 58.781 52.381 2.28 0.00 0.00 3.34
2233 5867 2.612212 CACCCTTTGGCATATGTCGTAC 59.388 50.000 2.28 0.00 33.59 3.67
2234 5868 2.420827 CCACCCTTTGGCATATGTCGTA 60.421 50.000 2.28 0.00 39.07 3.43
2235 5869 1.681780 CCACCCTTTGGCATATGTCGT 60.682 52.381 2.28 0.00 39.07 4.34
2236 5870 1.024271 CCACCCTTTGGCATATGTCG 58.976 55.000 2.28 0.00 39.07 4.35
2246 5880 2.428171 CACCATGATAAGCCACCCTTTG 59.572 50.000 0.00 0.00 34.95 2.77
2247 5881 2.624029 CCACCATGATAAGCCACCCTTT 60.624 50.000 0.00 0.00 34.95 3.11
2248 5882 1.063717 CCACCATGATAAGCCACCCTT 60.064 52.381 0.00 0.00 37.57 3.95
2249 5883 0.552848 CCACCATGATAAGCCACCCT 59.447 55.000 0.00 0.00 0.00 4.34
2250 5884 0.468029 CCCACCATGATAAGCCACCC 60.468 60.000 0.00 0.00 0.00 4.61
2251 5885 0.468029 CCCCACCATGATAAGCCACC 60.468 60.000 0.00 0.00 0.00 4.61
2252 5886 0.468029 CCCCCACCATGATAAGCCAC 60.468 60.000 0.00 0.00 0.00 5.01
2253 5887 1.929745 CCCCCACCATGATAAGCCA 59.070 57.895 0.00 0.00 0.00 4.75
2254 5888 1.531602 GCCCCCACCATGATAAGCC 60.532 63.158 0.00 0.00 0.00 4.35
2255 5889 1.898574 CGCCCCCACCATGATAAGC 60.899 63.158 0.00 0.00 0.00 3.09
2256 5890 0.250467 CTCGCCCCCACCATGATAAG 60.250 60.000 0.00 0.00 0.00 1.73
2257 5891 0.986019 ACTCGCCCCCACCATGATAA 60.986 55.000 0.00 0.00 0.00 1.75
2258 5892 0.105401 TACTCGCCCCCACCATGATA 60.105 55.000 0.00 0.00 0.00 2.15
2259 5893 1.383943 TACTCGCCCCCACCATGAT 60.384 57.895 0.00 0.00 0.00 2.45
2260 5894 2.039787 TACTCGCCCCCACCATGA 59.960 61.111 0.00 0.00 0.00 3.07
2261 5895 1.622607 TTCTACTCGCCCCCACCATG 61.623 60.000 0.00 0.00 0.00 3.66
2262 5896 1.306654 TTCTACTCGCCCCCACCAT 60.307 57.895 0.00 0.00 0.00 3.55
2263 5897 2.120940 TTCTACTCGCCCCCACCA 59.879 61.111 0.00 0.00 0.00 4.17
2264 5898 2.582978 GTTCTACTCGCCCCCACC 59.417 66.667 0.00 0.00 0.00 4.61
2265 5899 2.183555 CGTTCTACTCGCCCCCAC 59.816 66.667 0.00 0.00 0.00 4.61
2266 5900 2.283388 ACGTTCTACTCGCCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
2267 5901 2.493501 GACGTTCTACTCGCCCCC 59.506 66.667 0.00 0.00 0.00 5.40
2268 5902 2.101770 CGACGTTCTACTCGCCCC 59.898 66.667 0.00 0.00 0.00 5.80
2295 5929 3.385749 TTCGCCTCATCCCGCTTCC 62.386 63.158 0.00 0.00 0.00 3.46
2296 5930 1.884926 CTTCGCCTCATCCCGCTTC 60.885 63.158 0.00 0.00 0.00 3.86
2297 5931 2.187946 CTTCGCCTCATCCCGCTT 59.812 61.111 0.00 0.00 0.00 4.68
2298 5932 2.759973 TCTTCGCCTCATCCCGCT 60.760 61.111 0.00 0.00 0.00 5.52
2299 5933 2.586357 GTCTTCGCCTCATCCCGC 60.586 66.667 0.00 0.00 0.00 6.13
2300 5934 0.877649 CATGTCTTCGCCTCATCCCG 60.878 60.000 0.00 0.00 0.00 5.14
2301 5935 1.162800 GCATGTCTTCGCCTCATCCC 61.163 60.000 0.00 0.00 0.00 3.85
2302 5936 0.462581 TGCATGTCTTCGCCTCATCC 60.463 55.000 0.00 0.00 0.00 3.51
2303 5937 0.654683 GTGCATGTCTTCGCCTCATC 59.345 55.000 0.00 0.00 0.00 2.92
2304 5938 1.086067 CGTGCATGTCTTCGCCTCAT 61.086 55.000 0.00 0.00 0.00 2.90
2305 5939 1.737735 CGTGCATGTCTTCGCCTCA 60.738 57.895 0.00 0.00 0.00 3.86
2306 5940 3.084579 CGTGCATGTCTTCGCCTC 58.915 61.111 0.00 0.00 0.00 4.70
2307 5941 3.121030 GCGTGCATGTCTTCGCCT 61.121 61.111 7.93 0.00 42.33 5.52
2309 5943 4.505217 CGGCGTGCATGTCTTCGC 62.505 66.667 9.20 8.80 46.42 4.70
2310 5944 3.853330 CCGGCGTGCATGTCTTCG 61.853 66.667 9.20 7.41 0.00 3.79
2311 5945 4.166011 GCCGGCGTGCATGTCTTC 62.166 66.667 12.58 0.00 0.00 2.87
2319 5953 4.884257 TAAGATCCGCCGGCGTGC 62.884 66.667 43.12 31.21 37.81 5.34
2320 5954 2.960129 GTAAGATCCGCCGGCGTG 60.960 66.667 43.12 33.71 37.81 5.34
2321 5955 4.217159 GGTAAGATCCGCCGGCGT 62.217 66.667 43.12 29.47 37.81 5.68
2322 5956 4.963428 GGGTAAGATCCGCCGGCG 62.963 72.222 41.00 41.00 39.44 6.46
2323 5957 3.809374 CTGGGTAAGATCCGCCGGC 62.809 68.421 19.07 19.07 0.00 6.13
2324 5958 2.421739 CTGGGTAAGATCCGCCGG 59.578 66.667 0.00 0.00 0.00 6.13
2325 5959 2.280186 GCTGGGTAAGATCCGCCG 60.280 66.667 0.00 0.00 0.00 6.46
2326 5960 0.533085 GAAGCTGGGTAAGATCCGCC 60.533 60.000 0.00 0.00 0.00 6.13
2327 5961 0.178068 TGAAGCTGGGTAAGATCCGC 59.822 55.000 0.00 0.00 0.00 5.54
2328 5962 1.202580 CCTGAAGCTGGGTAAGATCCG 60.203 57.143 0.00 0.00 0.00 4.18
2329 5963 1.141858 CCCTGAAGCTGGGTAAGATCC 59.858 57.143 0.00 0.00 37.76 3.36
2330 5964 1.475930 GCCCTGAAGCTGGGTAAGATC 60.476 57.143 9.27 0.00 43.39 2.75
2331 5965 0.548510 GCCCTGAAGCTGGGTAAGAT 59.451 55.000 9.27 0.00 43.39 2.40
2332 5966 1.991230 GCCCTGAAGCTGGGTAAGA 59.009 57.895 9.27 0.00 43.39 2.10
2333 5967 4.645809 GCCCTGAAGCTGGGTAAG 57.354 61.111 9.27 0.00 43.39 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.