Multiple sequence alignment - TraesCS1B01G066000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G066000 chr1B 100.000 4300 0 0 1 4300 50202806 50207105 0.000000e+00 7941.0
1 TraesCS1B01G066000 chr1B 95.000 40 1 1 1 40 667980393 667980431 1.290000e-05 62.1
2 TraesCS1B01G066000 chr1B 92.500 40 2 1 1 40 566555237 566555199 6.010000e-04 56.5
3 TraesCS1B01G066000 chr1B 92.500 40 2 1 1 40 642607448 642607410 6.010000e-04 56.5
4 TraesCS1B01G066000 chr1A 90.578 3046 160 54 775 3747 31254857 31251866 0.000000e+00 3917.0
5 TraesCS1B01G066000 chr1A 88.679 477 32 10 3826 4300 31251276 31250820 2.900000e-156 562.0
6 TraesCS1B01G066000 chr1A 92.000 100 2 3 258 356 31532420 31532326 7.500000e-28 135.0
7 TraesCS1B01G066000 chr1A 96.000 75 3 0 3739 3813 31251441 31251367 5.840000e-24 122.0
8 TraesCS1B01G066000 chr1D 91.842 2660 139 38 691 3307 32737525 32740149 0.000000e+00 3639.0
9 TraesCS1B01G066000 chr1D 86.227 864 49 29 3434 4248 32740309 32741151 0.000000e+00 872.0
10 TraesCS1B01G066000 chr1D 86.707 331 27 8 257 576 32737033 32737357 6.840000e-93 351.0
11 TraesCS1B01G066000 chr5D 84.839 1893 250 24 1309 3196 102331935 102330075 0.000000e+00 1871.0
12 TraesCS1B01G066000 chr5D 90.000 70 6 1 93 162 308167352 308167420 5.920000e-14 89.8
13 TraesCS1B01G066000 chr5B 84.485 1895 253 26 1309 3196 112021376 112019516 0.000000e+00 1832.0
14 TraesCS1B01G066000 chr5A 84.298 1917 258 34 1289 3196 96983762 96985644 0.000000e+00 1832.0
15 TraesCS1B01G066000 chr3B 83.342 1879 277 26 1312 3184 24019167 24017319 0.000000e+00 1703.0
16 TraesCS1B01G066000 chr3A 82.810 1879 291 21 1310 3184 19988467 19990317 0.000000e+00 1652.0
17 TraesCS1B01G066000 chr3A 78.366 1909 342 64 1317 3194 602224992 602226860 0.000000e+00 1171.0
18 TraesCS1B01G066000 chr3A 94.872 39 1 1 1 39 115843757 115843720 4.640000e-05 60.2
19 TraesCS1B01G066000 chr3A 100.000 28 0 0 70 97 23630545 23630572 8.000000e-03 52.8
20 TraesCS1B01G066000 chr3D 78.509 1931 340 68 1297 3194 460180030 460181918 0.000000e+00 1197.0
21 TraesCS1B01G066000 chr3D 95.000 40 1 1 1 40 401889972 401889934 1.290000e-05 62.1
22 TraesCS1B01G066000 chr4B 78.256 952 181 23 2270 3206 428900282 428901222 4.790000e-164 588.0
23 TraesCS1B01G066000 chr4B 100.000 28 0 0 13 40 128372947 128372974 8.000000e-03 52.8
24 TraesCS1B01G066000 chr4D 95.000 40 1 1 1 40 484745362 484745400 1.290000e-05 62.1
25 TraesCS1B01G066000 chr2D 94.872 39 1 1 1 39 46915751 46915714 4.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G066000 chr1B 50202806 50207105 4299 False 7941.000000 7941 100.000000 1 4300 1 chr1B.!!$F1 4299
1 TraesCS1B01G066000 chr1A 31250820 31254857 4037 True 1533.666667 3917 91.752333 775 4300 3 chr1A.!!$R2 3525
2 TraesCS1B01G066000 chr1D 32737033 32741151 4118 False 1620.666667 3639 88.258667 257 4248 3 chr1D.!!$F1 3991
3 TraesCS1B01G066000 chr5D 102330075 102331935 1860 True 1871.000000 1871 84.839000 1309 3196 1 chr5D.!!$R1 1887
4 TraesCS1B01G066000 chr5B 112019516 112021376 1860 True 1832.000000 1832 84.485000 1309 3196 1 chr5B.!!$R1 1887
5 TraesCS1B01G066000 chr5A 96983762 96985644 1882 False 1832.000000 1832 84.298000 1289 3196 1 chr5A.!!$F1 1907
6 TraesCS1B01G066000 chr3B 24017319 24019167 1848 True 1703.000000 1703 83.342000 1312 3184 1 chr3B.!!$R1 1872
7 TraesCS1B01G066000 chr3A 19988467 19990317 1850 False 1652.000000 1652 82.810000 1310 3184 1 chr3A.!!$F1 1874
8 TraesCS1B01G066000 chr3A 602224992 602226860 1868 False 1171.000000 1171 78.366000 1317 3194 1 chr3A.!!$F3 1877
9 TraesCS1B01G066000 chr3D 460180030 460181918 1888 False 1197.000000 1197 78.509000 1297 3194 1 chr3D.!!$F1 1897
10 TraesCS1B01G066000 chr4B 428900282 428901222 940 False 588.000000 588 78.256000 2270 3206 1 chr4B.!!$F2 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 738 0.037605 ACGTCGGATCTTTCACACCC 60.038 55.0 0.00 0.00 0.00 4.61 F
1222 1377 0.677098 TCTCCTTCACCGACCTCTCG 60.677 60.0 0.00 0.00 39.83 4.04 F
2136 2294 0.873312 CTGATGATGGACGGCGACAG 60.873 60.0 16.62 5.89 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2275 0.873312 CTGTCGCCGTCCATCATCAG 60.873 60.000 0.0 0.0 0.0 2.90 R
2380 2550 1.203758 TCGTCAAGCCGCAGAAAGATA 59.796 47.619 0.0 0.0 0.0 1.98 R
4119 4906 0.251386 AGTGGAGAAGCGTGAGGAGA 60.251 55.000 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.143813 AGTTGGGCTGGGATATGAGG 58.856 55.000 0.00 0.00 0.00 3.86
22 23 0.111253 GTTGGGCTGGGATATGAGGG 59.889 60.000 0.00 0.00 0.00 4.30
23 24 1.067762 TTGGGCTGGGATATGAGGGG 61.068 60.000 0.00 0.00 0.00 4.79
24 25 1.464198 GGGCTGGGATATGAGGGGT 60.464 63.158 0.00 0.00 0.00 4.95
25 26 1.763770 GGCTGGGATATGAGGGGTG 59.236 63.158 0.00 0.00 0.00 4.61
26 27 1.073897 GCTGGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
27 28 1.763770 CTGGGATATGAGGGGTGCC 59.236 63.158 0.00 0.00 0.00 5.01
28 29 2.116983 CTGGGATATGAGGGGTGCCG 62.117 65.000 0.00 0.00 0.00 5.69
29 30 2.750350 GGATATGAGGGGTGCCGG 59.250 66.667 0.00 0.00 0.00 6.13
30 31 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
31 32 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
32 33 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
33 34 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
50 51 4.660938 GCCCGGTGCCCCCATATC 62.661 72.222 0.00 0.00 0.00 1.63
51 52 3.966543 CCCGGTGCCCCCATATCC 61.967 72.222 0.00 0.00 0.00 2.59
52 53 4.329545 CCGGTGCCCCCATATCCG 62.330 72.222 0.00 0.00 40.72 4.18
54 55 4.660938 GGTGCCCCCATATCCGCC 62.661 72.222 0.00 0.00 0.00 6.13
55 56 4.660938 GTGCCCCCATATCCGCCC 62.661 72.222 0.00 0.00 0.00 6.13
58 59 2.941025 CCCCCATATCCGCCCCAT 60.941 66.667 0.00 0.00 0.00 4.00
59 60 1.618143 CCCCCATATCCGCCCCATA 60.618 63.158 0.00 0.00 0.00 2.74
60 61 0.993509 CCCCCATATCCGCCCCATAT 60.994 60.000 0.00 0.00 0.00 1.78
61 62 0.926293 CCCCATATCCGCCCCATATT 59.074 55.000 0.00 0.00 0.00 1.28
62 63 1.287739 CCCCATATCCGCCCCATATTT 59.712 52.381 0.00 0.00 0.00 1.40
63 64 2.292192 CCCCATATCCGCCCCATATTTT 60.292 50.000 0.00 0.00 0.00 1.82
64 65 2.760092 CCCATATCCGCCCCATATTTTG 59.240 50.000 0.00 0.00 0.00 2.44
65 66 3.430453 CCATATCCGCCCCATATTTTGT 58.570 45.455 0.00 0.00 0.00 2.83
66 67 3.443681 CCATATCCGCCCCATATTTTGTC 59.556 47.826 0.00 0.00 0.00 3.18
67 68 4.335416 CATATCCGCCCCATATTTTGTCT 58.665 43.478 0.00 0.00 0.00 3.41
68 69 2.051334 TCCGCCCCATATTTTGTCTG 57.949 50.000 0.00 0.00 0.00 3.51
69 70 1.032014 CCGCCCCATATTTTGTCTGG 58.968 55.000 0.00 0.00 0.00 3.86
79 80 5.948162 CCATATTTTGTCTGGGATATGAGGG 59.052 44.000 0.00 0.00 35.49 4.30
80 81 6.240263 CCATATTTTGTCTGGGATATGAGGGA 60.240 42.308 0.00 0.00 35.49 4.20
81 82 5.937492 ATTTTGTCTGGGATATGAGGGAT 57.063 39.130 0.00 0.00 0.00 3.85
82 83 4.712051 TTTGTCTGGGATATGAGGGATG 57.288 45.455 0.00 0.00 0.00 3.51
83 84 1.980765 TGTCTGGGATATGAGGGATGC 59.019 52.381 0.00 0.00 0.00 3.91
84 85 1.280421 GTCTGGGATATGAGGGATGCC 59.720 57.143 0.00 0.00 35.45 4.40
85 86 0.251354 CTGGGATATGAGGGATGCCG 59.749 60.000 0.00 0.00 37.60 5.69
86 87 1.200760 TGGGATATGAGGGATGCCGG 61.201 60.000 0.00 0.00 37.60 6.13
87 88 1.201429 GGGATATGAGGGATGCCGGT 61.201 60.000 1.90 0.00 0.00 5.28
88 89 0.250513 GGATATGAGGGATGCCGGTC 59.749 60.000 1.90 0.00 0.00 4.79
89 90 0.976641 GATATGAGGGATGCCGGTCA 59.023 55.000 1.90 1.38 0.00 4.02
90 91 0.979665 ATATGAGGGATGCCGGTCAG 59.020 55.000 1.90 0.00 0.00 3.51
91 92 1.121407 TATGAGGGATGCCGGTCAGG 61.121 60.000 1.90 0.00 44.97 3.86
115 116 4.660938 GCCCCATATCCGCCCCAC 62.661 72.222 0.00 0.00 0.00 4.61
116 117 3.174987 CCCCATATCCGCCCCACA 61.175 66.667 0.00 0.00 0.00 4.17
117 118 2.538141 CCCCATATCCGCCCCACAT 61.538 63.158 0.00 0.00 0.00 3.21
118 119 1.460255 CCCATATCCGCCCCACATT 59.540 57.895 0.00 0.00 0.00 2.71
119 120 0.178964 CCCATATCCGCCCCACATTT 60.179 55.000 0.00 0.00 0.00 2.32
120 121 0.961019 CCATATCCGCCCCACATTTG 59.039 55.000 0.00 0.00 0.00 2.32
121 122 0.961019 CATATCCGCCCCACATTTGG 59.039 55.000 0.00 0.00 43.50 3.28
122 123 0.555769 ATATCCGCCCCACATTTGGT 59.444 50.000 0.00 0.00 42.10 3.67
123 124 0.106918 TATCCGCCCCACATTTGGTC 60.107 55.000 0.00 0.00 42.10 4.02
124 125 1.863155 ATCCGCCCCACATTTGGTCT 61.863 55.000 0.00 0.00 42.10 3.85
125 126 2.342650 CCGCCCCACATTTGGTCTG 61.343 63.158 0.00 0.00 42.10 3.51
126 127 2.342650 CGCCCCACATTTGGTCTGG 61.343 63.158 0.00 0.00 42.10 3.86
127 128 1.984026 GCCCCACATTTGGTCTGGG 60.984 63.158 0.00 0.00 42.10 4.45
133 134 4.169059 CCACATTTGGTCTGGGATATGA 57.831 45.455 0.00 0.00 38.23 2.15
134 135 4.139786 CCACATTTGGTCTGGGATATGAG 58.860 47.826 0.00 0.00 38.23 2.90
135 136 4.139786 CACATTTGGTCTGGGATATGAGG 58.860 47.826 0.00 0.00 0.00 3.86
136 137 3.139025 ACATTTGGTCTGGGATATGAGGG 59.861 47.826 0.00 0.00 0.00 4.30
137 138 2.587060 TTGGTCTGGGATATGAGGGT 57.413 50.000 0.00 0.00 0.00 4.34
138 139 2.587060 TGGTCTGGGATATGAGGGTT 57.413 50.000 0.00 0.00 0.00 4.11
139 140 2.126882 TGGTCTGGGATATGAGGGTTG 58.873 52.381 0.00 0.00 0.00 3.77
140 141 1.202818 GGTCTGGGATATGAGGGTTGC 60.203 57.143 0.00 0.00 0.00 4.17
141 142 1.140312 TCTGGGATATGAGGGTTGCC 58.860 55.000 0.00 0.00 0.00 4.52
142 143 0.250467 CTGGGATATGAGGGTTGCCG 60.250 60.000 0.00 0.00 0.00 5.69
143 144 1.073199 GGGATATGAGGGTTGCCGG 59.927 63.158 0.00 0.00 0.00 6.13
144 145 1.705997 GGGATATGAGGGTTGCCGGT 61.706 60.000 1.90 0.00 0.00 5.28
145 146 0.250338 GGATATGAGGGTTGCCGGTC 60.250 60.000 1.90 0.00 0.00 4.79
146 147 0.468226 GATATGAGGGTTGCCGGTCA 59.532 55.000 1.90 0.00 0.00 4.02
147 148 0.180406 ATATGAGGGTTGCCGGTCAC 59.820 55.000 1.90 0.00 0.00 3.67
148 149 1.906105 TATGAGGGTTGCCGGTCACC 61.906 60.000 14.25 14.25 0.00 4.02
149 150 4.717313 GAGGGTTGCCGGTCACCC 62.717 72.222 27.74 27.74 42.59 4.61
167 168 4.379243 CGGGCGCTTGAGACCTGT 62.379 66.667 7.64 0.00 0.00 4.00
168 169 2.032681 GGGCGCTTGAGACCTGTT 59.967 61.111 7.64 0.00 0.00 3.16
169 170 1.600916 GGGCGCTTGAGACCTGTTT 60.601 57.895 7.64 0.00 0.00 2.83
170 171 1.576421 GGCGCTTGAGACCTGTTTG 59.424 57.895 7.64 0.00 0.00 2.93
171 172 0.884704 GGCGCTTGAGACCTGTTTGA 60.885 55.000 7.64 0.00 0.00 2.69
172 173 0.514691 GCGCTTGAGACCTGTTTGAG 59.485 55.000 0.00 0.00 0.00 3.02
180 181 2.672996 CCTGTTTGAGGTGCCCGG 60.673 66.667 0.00 0.00 37.02 5.73
181 182 3.365265 CTGTTTGAGGTGCCCGGC 61.365 66.667 1.04 1.04 0.00 6.13
182 183 3.850098 CTGTTTGAGGTGCCCGGCT 62.850 63.158 11.61 0.00 0.00 5.52
183 184 3.365265 GTTTGAGGTGCCCGGCTG 61.365 66.667 11.61 0.00 0.00 4.85
184 185 4.659172 TTTGAGGTGCCCGGCTGG 62.659 66.667 11.61 3.88 37.09 4.85
194 195 3.996614 CCGGCTGGGTCGAAATTT 58.003 55.556 2.57 0.00 29.41 1.82
195 196 1.800681 CCGGCTGGGTCGAAATTTC 59.199 57.895 2.57 8.20 29.41 2.17
205 206 2.535588 CGAAATTTCGTGACCGGGT 58.464 52.632 28.21 0.00 45.09 5.28
206 207 0.165079 CGAAATTTCGTGACCGGGTG 59.835 55.000 28.21 0.70 45.09 4.61
207 208 0.519961 GAAATTTCGTGACCGGGTGG 59.480 55.000 3.30 0.00 42.84 4.61
208 209 1.520600 AAATTTCGTGACCGGGTGGC 61.521 55.000 3.30 0.00 39.70 5.01
209 210 3.912745 ATTTCGTGACCGGGTGGCC 62.913 63.158 3.30 0.00 39.70 5.36
226 227 2.824041 CCGCCCGGGAGTTTGATG 60.824 66.667 29.31 2.39 38.47 3.07
227 228 2.267642 CGCCCGGGAGTTTGATGA 59.732 61.111 29.31 0.00 0.00 2.92
228 229 1.815421 CGCCCGGGAGTTTGATGAG 60.815 63.158 29.31 0.00 0.00 2.90
229 230 1.452108 GCCCGGGAGTTTGATGAGG 60.452 63.158 29.31 0.00 0.00 3.86
230 231 1.224592 CCCGGGAGTTTGATGAGGG 59.775 63.158 18.48 0.00 0.00 4.30
231 232 1.562672 CCCGGGAGTTTGATGAGGGT 61.563 60.000 18.48 0.00 33.00 4.34
232 233 0.328258 CCGGGAGTTTGATGAGGGTT 59.672 55.000 0.00 0.00 0.00 4.11
233 234 1.271926 CCGGGAGTTTGATGAGGGTTT 60.272 52.381 0.00 0.00 0.00 3.27
234 235 1.812571 CGGGAGTTTGATGAGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
235 236 2.552155 CGGGAGTTTGATGAGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
236 237 3.084786 GGGAGTTTGATGAGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
237 238 3.244911 GGGAGTTTGATGAGGGTTTGAGA 60.245 47.826 0.00 0.00 0.00 3.27
238 239 4.568592 GGGAGTTTGATGAGGGTTTGAGAT 60.569 45.833 0.00 0.00 0.00 2.75
239 240 4.397417 GGAGTTTGATGAGGGTTTGAGATG 59.603 45.833 0.00 0.00 0.00 2.90
240 241 3.760684 AGTTTGATGAGGGTTTGAGATGC 59.239 43.478 0.00 0.00 0.00 3.91
241 242 2.425143 TGATGAGGGTTTGAGATGCC 57.575 50.000 0.00 0.00 0.00 4.40
242 243 1.064463 TGATGAGGGTTTGAGATGCCC 60.064 52.381 0.00 0.00 42.64 5.36
243 244 0.107017 ATGAGGGTTTGAGATGCCCG 60.107 55.000 0.00 0.00 46.69 6.13
244 245 1.299976 GAGGGTTTGAGATGCCCGT 59.700 57.895 0.00 0.00 46.69 5.28
245 246 0.322546 GAGGGTTTGAGATGCCCGTT 60.323 55.000 0.00 0.00 46.69 4.44
246 247 0.609131 AGGGTTTGAGATGCCCGTTG 60.609 55.000 0.00 0.00 46.69 4.10
247 248 0.893727 GGGTTTGAGATGCCCGTTGT 60.894 55.000 0.00 0.00 32.16 3.32
248 249 1.612199 GGGTTTGAGATGCCCGTTGTA 60.612 52.381 0.00 0.00 32.16 2.41
249 250 1.737793 GGTTTGAGATGCCCGTTGTAG 59.262 52.381 0.00 0.00 0.00 2.74
250 251 2.614481 GGTTTGAGATGCCCGTTGTAGA 60.614 50.000 0.00 0.00 0.00 2.59
251 252 3.270877 GTTTGAGATGCCCGTTGTAGAT 58.729 45.455 0.00 0.00 0.00 1.98
252 253 2.602257 TGAGATGCCCGTTGTAGATG 57.398 50.000 0.00 0.00 0.00 2.90
253 254 1.221414 GAGATGCCCGTTGTAGATGC 58.779 55.000 0.00 0.00 0.00 3.91
254 255 0.833287 AGATGCCCGTTGTAGATGCT 59.167 50.000 0.00 0.00 0.00 3.79
255 256 0.940126 GATGCCCGTTGTAGATGCTG 59.060 55.000 0.00 0.00 0.00 4.41
263 264 4.097437 CCCGTTGTAGATGCTGTTAGTAGA 59.903 45.833 0.00 0.00 0.00 2.59
266 267 5.687730 CGTTGTAGATGCTGTTAGTAGATGG 59.312 44.000 0.00 0.00 0.00 3.51
395 403 4.041567 TGAAGGAGAAGTGATGCTAAACCA 59.958 41.667 0.00 0.00 0.00 3.67
403 411 6.547510 AGAAGTGATGCTAAACCAGAAGTTTT 59.452 34.615 0.00 0.00 46.79 2.43
432 443 3.152341 CAAATCCACATGCCTATCCTCC 58.848 50.000 0.00 0.00 0.00 4.30
444 455 4.706476 TGCCTATCCTCCTCATTTTTGTTG 59.294 41.667 0.00 0.00 0.00 3.33
460 471 6.487689 TTTTGTTGTTTTGCGAGGAAATTT 57.512 29.167 0.00 0.00 0.00 1.82
474 485 4.755411 AGGAAATTTAGACGCTCATTCGA 58.245 39.130 0.00 0.00 0.00 3.71
475 486 5.175859 AGGAAATTTAGACGCTCATTCGAA 58.824 37.500 0.00 0.00 0.00 3.71
495 506 4.376008 CGAACGAACACTCCACATTTGTAG 60.376 45.833 0.00 0.00 0.00 2.74
498 509 5.790593 ACGAACACTCCACATTTGTAGTAT 58.209 37.500 0.00 0.00 0.00 2.12
499 510 6.927416 ACGAACACTCCACATTTGTAGTATA 58.073 36.000 0.00 0.00 0.00 1.47
500 511 6.810182 ACGAACACTCCACATTTGTAGTATAC 59.190 38.462 0.00 0.00 43.42 1.47
525 536 2.869503 AATAGGGCCAGGAACGTGCG 62.870 60.000 6.18 0.00 0.00 5.34
531 542 2.174107 CAGGAACGTGCGTGCATG 59.826 61.111 12.31 12.31 38.78 4.06
532 543 3.726517 AGGAACGTGCGTGCATGC 61.727 61.111 24.20 24.20 36.48 4.06
533 544 4.024143 GGAACGTGCGTGCATGCA 62.024 61.111 29.30 29.30 43.95 3.96
555 566 3.885484 GCATATTGCGAATACACAGCT 57.115 42.857 0.00 0.00 31.71 4.24
561 572 9.781069 GCATATTGCGAATACACAGCTTGTGAT 62.781 40.741 19.01 8.48 41.55 3.06
579 590 6.680874 TGTGATAGTAAAACACAAAACCGT 57.319 33.333 0.00 0.00 40.72 4.83
580 591 7.086230 TGTGATAGTAAAACACAAAACCGTT 57.914 32.000 0.00 0.00 40.72 4.44
581 592 7.188157 TGTGATAGTAAAACACAAAACCGTTC 58.812 34.615 0.00 0.00 40.72 3.95
582 593 6.355144 GTGATAGTAAAACACAAAACCGTTCG 59.645 38.462 0.00 0.00 35.06 3.95
583 594 4.943142 AGTAAAACACAAAACCGTTCGA 57.057 36.364 0.00 0.00 0.00 3.71
584 595 5.294050 AGTAAAACACAAAACCGTTCGAA 57.706 34.783 0.00 0.00 0.00 3.71
585 596 5.697826 AGTAAAACACAAAACCGTTCGAAA 58.302 33.333 0.00 0.00 0.00 3.46
586 597 4.889519 AAAACACAAAACCGTTCGAAAC 57.110 36.364 0.00 0.00 0.00 2.78
588 599 3.394313 ACACAAAACCGTTCGAAACTC 57.606 42.857 0.00 0.00 0.00 3.01
590 601 3.063045 ACACAAAACCGTTCGAAACTCTC 59.937 43.478 0.00 0.00 0.00 3.20
596 607 2.002586 CCGTTCGAAACTCTCATGCAT 58.997 47.619 0.00 0.00 0.00 3.96
597 608 2.222886 CCGTTCGAAACTCTCATGCATG 60.223 50.000 21.07 21.07 0.00 4.06
598 609 2.667969 CGTTCGAAACTCTCATGCATGA 59.332 45.455 27.10 27.10 35.16 3.07
600 611 4.201753 CGTTCGAAACTCTCATGCATGATT 60.202 41.667 28.81 19.92 36.02 2.57
601 612 4.870221 TCGAAACTCTCATGCATGATTG 57.130 40.909 28.81 23.97 36.02 2.67
610 621 3.365955 GCATGATTGCGCACGTTG 58.634 55.556 11.12 7.04 39.49 4.10
612 623 1.667349 GCATGATTGCGCACGTTGTG 61.667 55.000 11.12 7.12 39.49 3.33
613 624 0.385849 CATGATTGCGCACGTTGTGT 60.386 50.000 11.12 0.00 35.75 3.72
629 666 1.085091 GTGTGCTTCATCAGGCTCTG 58.915 55.000 0.00 0.00 0.00 3.35
630 667 0.675837 TGTGCTTCATCAGGCTCTGC 60.676 55.000 0.00 0.00 0.00 4.26
631 668 0.675837 GTGCTTCATCAGGCTCTGCA 60.676 55.000 0.00 0.00 0.00 4.41
632 669 0.675837 TGCTTCATCAGGCTCTGCAC 60.676 55.000 0.00 0.00 0.00 4.57
633 670 0.392729 GCTTCATCAGGCTCTGCACT 60.393 55.000 0.00 0.00 0.00 4.40
634 671 1.370609 CTTCATCAGGCTCTGCACTG 58.629 55.000 0.00 0.00 36.07 3.66
635 672 0.675837 TTCATCAGGCTCTGCACTGC 60.676 55.000 0.00 0.00 34.76 4.40
636 673 2.125229 ATCAGGCTCTGCACTGCG 60.125 61.111 0.00 0.00 34.76 5.18
664 701 1.340465 GCAGTACAATGCGTCGACG 59.660 57.895 32.57 32.57 43.27 5.12
665 702 1.342082 GCAGTACAATGCGTCGACGT 61.342 55.000 35.48 20.06 42.22 4.34
666 703 0.633733 CAGTACAATGCGTCGACGTC 59.366 55.000 35.48 27.35 42.22 4.34
668 705 1.512522 TACAATGCGTCGACGTCGG 60.513 57.895 35.48 24.53 42.22 4.79
669 706 1.910216 TACAATGCGTCGACGTCGGA 61.910 55.000 35.48 20.20 42.22 4.55
672 729 1.989966 AATGCGTCGACGTCGGATCT 61.990 55.000 35.48 15.30 38.29 2.75
681 738 0.037605 ACGTCGGATCTTTCACACCC 60.038 55.000 0.00 0.00 0.00 4.61
686 743 1.738030 CGGATCTTTCACACCCCGTAC 60.738 57.143 0.00 0.00 33.02 3.67
687 744 1.406477 GGATCTTTCACACCCCGTACC 60.406 57.143 0.00 0.00 0.00 3.34
688 745 1.276989 GATCTTTCACACCCCGTACCA 59.723 52.381 0.00 0.00 0.00 3.25
689 746 1.129917 TCTTTCACACCCCGTACCAA 58.870 50.000 0.00 0.00 0.00 3.67
766 842 3.353557 AGGGAAGAAAATTTACTCCGGC 58.646 45.455 0.00 0.00 0.00 6.13
767 843 3.010250 AGGGAAGAAAATTTACTCCGGCT 59.990 43.478 0.00 0.00 0.00 5.52
768 844 3.377485 GGGAAGAAAATTTACTCCGGCTC 59.623 47.826 0.00 0.00 0.00 4.70
769 845 3.063588 GGAAGAAAATTTACTCCGGCTCG 59.936 47.826 0.00 0.00 0.00 5.03
770 846 2.007608 AGAAAATTTACTCCGGCTCGC 58.992 47.619 0.00 0.00 0.00 5.03
772 848 1.816074 AAATTTACTCCGGCTCGCAA 58.184 45.000 0.00 0.00 0.00 4.85
802 892 1.138266 TGCGAGGTTAGTTATGGAGGC 59.862 52.381 0.00 0.00 0.00 4.70
803 893 1.868519 GCGAGGTTAGTTATGGAGGCG 60.869 57.143 0.00 0.00 0.00 5.52
804 894 1.679680 CGAGGTTAGTTATGGAGGCGA 59.320 52.381 0.00 0.00 0.00 5.54
805 895 2.287668 CGAGGTTAGTTATGGAGGCGAG 60.288 54.545 0.00 0.00 0.00 5.03
806 896 2.694109 GAGGTTAGTTATGGAGGCGAGT 59.306 50.000 0.00 0.00 0.00 4.18
807 897 2.431057 AGGTTAGTTATGGAGGCGAGTG 59.569 50.000 0.00 0.00 0.00 3.51
808 898 2.202566 GTTAGTTATGGAGGCGAGTGC 58.797 52.381 0.00 0.00 41.71 4.40
834 929 2.961062 GGCTAACACGGAGGGACTAATA 59.039 50.000 0.00 0.00 41.55 0.98
840 935 2.557490 CACGGAGGGACTAATACTAGCC 59.443 54.545 0.00 0.00 41.55 3.93
960 1091 1.229209 TCGGAAACCAGCTCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
961 1092 1.219393 CGGAAACCAGCTCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
967 1098 2.837291 CAGCTCCTCCTCCTCCGG 60.837 72.222 0.00 0.00 0.00 5.14
971 1102 2.698788 TCCTCCTCCTCCGGCCTA 60.699 66.667 0.00 0.00 0.00 3.93
972 1103 2.087857 CTCCTCCTCCTCCGGCCTAT 62.088 65.000 0.00 0.00 0.00 2.57
973 1104 0.774888 TCCTCCTCCTCCGGCCTATA 60.775 60.000 0.00 0.00 0.00 1.31
976 1107 2.024273 CCTCCTCCTCCGGCCTATATAA 60.024 54.545 0.00 0.00 0.00 0.98
977 1108 3.025262 CTCCTCCTCCGGCCTATATAAC 58.975 54.545 0.00 0.00 0.00 1.89
978 1109 2.108970 CCTCCTCCGGCCTATATAACC 58.891 57.143 0.00 0.00 0.00 2.85
980 1111 2.496470 CTCCTCCGGCCTATATAACCAC 59.504 54.545 0.00 0.00 0.00 4.16
982 1113 1.203994 CTCCGGCCTATATAACCACCG 59.796 57.143 0.00 0.00 40.30 4.94
984 1115 1.337447 CCGGCCTATATAACCACCGTG 60.337 57.143 0.00 0.00 38.99 4.94
1017 1148 2.534019 CCAGGCACGACACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
1064 1195 2.127528 AAACCCCTCCCTCCCTCC 59.872 66.667 0.00 0.00 0.00 4.30
1065 1196 3.598173 AAACCCCTCCCTCCCTCCC 62.598 68.421 0.00 0.00 0.00 4.30
1222 1377 0.677098 TCTCCTTCACCGACCTCTCG 60.677 60.000 0.00 0.00 39.83 4.04
2035 2193 3.470567 GAGTTCGCGCTGGACACG 61.471 66.667 5.56 0.00 0.00 4.49
2133 2291 1.960040 AAGCTGATGATGGACGGCGA 61.960 55.000 16.62 0.00 42.40 5.54
2136 2294 0.873312 CTGATGATGGACGGCGACAG 60.873 60.000 16.62 5.89 0.00 3.51
2386 2556 2.366916 CCTCATCCTGGCGACTATCTTT 59.633 50.000 0.00 0.00 0.00 2.52
2395 2565 1.927895 CGACTATCTTTCTGCGGCTT 58.072 50.000 0.00 0.00 0.00 4.35
3194 3370 3.497640 CAGCAAGAACAAGAGGAAGTGAG 59.502 47.826 0.00 0.00 0.00 3.51
3205 3384 2.023673 AGGAAGTGAGAGCTCGATCAG 58.976 52.381 8.37 0.00 0.00 2.90
3237 3416 7.380333 CGGCATACATTACGTTCTTGTATCTTA 59.620 37.037 12.21 0.00 35.04 2.10
3315 3494 6.067263 TGTAAAATGTTCAGTACAACTGGC 57.933 37.500 7.18 2.31 45.94 4.85
3316 3495 5.825679 TGTAAAATGTTCAGTACAACTGGCT 59.174 36.000 7.18 0.00 45.94 4.75
3317 3496 5.852282 AAAATGTTCAGTACAACTGGCTT 57.148 34.783 7.18 0.00 45.94 4.35
3353 3532 9.994432 CATAAATTCAGTATTGTTCAGTCCTTC 57.006 33.333 0.00 0.00 0.00 3.46
3357 3536 4.523173 TCAGTATTGTTCAGTCCTTCGAGT 59.477 41.667 0.00 0.00 0.00 4.18
3373 3552 6.932400 TCCTTCGAGTATTGTTCTTTTGCTTA 59.068 34.615 0.00 0.00 0.00 3.09
3398 3577 3.494048 GCATCTGGATGGTCAGAGTAAGG 60.494 52.174 11.82 0.00 45.60 2.69
3400 3579 2.114616 CTGGATGGTCAGAGTAAGGCT 58.885 52.381 0.00 0.00 36.93 4.58
3404 3583 2.604912 TGGTCAGAGTAAGGCTGAGA 57.395 50.000 0.00 0.00 42.57 3.27
3405 3584 2.171840 TGGTCAGAGTAAGGCTGAGAC 58.828 52.381 0.00 0.00 42.57 3.36
3406 3585 1.478916 GGTCAGAGTAAGGCTGAGACC 59.521 57.143 0.00 0.00 42.57 3.85
3407 3586 2.452505 GTCAGAGTAAGGCTGAGACCT 58.547 52.381 0.00 0.00 42.57 3.85
3412 3591 3.199508 AGAGTAAGGCTGAGACCTACGTA 59.800 47.826 0.00 0.00 39.93 3.57
3423 3649 3.022406 AGACCTACGTATGTCCCAAGAC 58.978 50.000 22.47 2.32 43.83 3.01
3424 3650 3.022406 GACCTACGTATGTCCCAAGACT 58.978 50.000 17.32 0.00 43.91 3.24
3426 3652 3.194968 ACCTACGTATGTCCCAAGACTTG 59.805 47.826 8.31 8.31 43.91 3.16
3427 3653 2.094762 ACGTATGTCCCAAGACTTGC 57.905 50.000 9.85 0.00 43.91 4.01
3428 3654 1.346395 ACGTATGTCCCAAGACTTGCA 59.654 47.619 9.85 3.20 43.91 4.08
3429 3655 2.027192 ACGTATGTCCCAAGACTTGCAT 60.027 45.455 9.85 10.20 43.91 3.96
3430 3656 2.352651 CGTATGTCCCAAGACTTGCATG 59.647 50.000 9.85 0.00 43.91 4.06
3439 3665 3.305813 CCAAGACTTGCATGCTTTGTGAT 60.306 43.478 20.33 3.51 0.00 3.06
3476 3702 4.293415 CCTGCAAATCAAAGACACTTGAC 58.707 43.478 0.00 0.00 38.12 3.18
3485 3711 4.162320 TCAAAGACACTTGACCTCAACTCT 59.838 41.667 0.00 0.00 30.31 3.24
3569 3816 6.262273 GTCTTAACCACACTCCTGAAATTTCA 59.738 38.462 19.45 19.45 35.57 2.69
3578 3825 4.584743 ACTCCTGAAATTTCAAGACAACCC 59.415 41.667 20.82 0.00 36.64 4.11
3676 3923 5.220472 CGTACTGCCACAGATCATAAACAAG 60.220 44.000 0.78 0.00 35.18 3.16
3689 3936 5.801380 TCATAAACAAGTCTTCCTGTACCC 58.199 41.667 0.00 0.00 0.00 3.69
3709 3956 2.036992 CCTCTAGATTCGCAAGCCTCAT 59.963 50.000 0.00 0.00 37.18 2.90
3721 3968 4.510571 GCAAGCCTCATCAAATCCAAAAT 58.489 39.130 0.00 0.00 0.00 1.82
3808 4517 2.621998 TCTGCAACCGTAGCTACTATCC 59.378 50.000 21.20 6.85 0.00 2.59
3813 4522 4.556302 GCAACCGTAGCTACTATCCTGTAC 60.556 50.000 21.20 0.00 0.00 2.90
3814 4523 4.703379 ACCGTAGCTACTATCCTGTACT 57.297 45.455 21.20 0.00 0.00 2.73
3816 4525 4.002316 CCGTAGCTACTATCCTGTACTCC 58.998 52.174 21.20 0.00 0.00 3.85
3819 4528 4.376225 AGCTACTATCCTGTACTCCCTC 57.624 50.000 0.00 0.00 0.00 4.30
3820 4529 3.984770 AGCTACTATCCTGTACTCCCTCT 59.015 47.826 0.00 0.00 0.00 3.69
3822 4531 4.446600 GCTACTATCCTGTACTCCCTCTGT 60.447 50.000 0.00 0.00 0.00 3.41
3823 4532 5.221884 GCTACTATCCTGTACTCCCTCTGTA 60.222 48.000 0.00 0.00 0.00 2.74
3901 4688 4.940046 CAGTGTCTCACTTGGCATCTTATT 59.060 41.667 0.00 0.00 42.59 1.40
3974 4761 6.806739 CGTAGCATATGATTCAGACGGAATTA 59.193 38.462 6.97 0.00 46.17 1.40
4032 4819 1.160137 GACAGGTGACAAGATGCCAC 58.840 55.000 0.00 0.00 29.49 5.01
4045 4832 4.864334 GCCACGGCCAGATGGAGG 62.864 72.222 19.49 4.44 38.34 4.30
4063 4850 4.264128 TGGAGGGATCGTGATCAGAGATAT 60.264 45.833 12.14 4.04 39.54 1.63
4067 4854 6.068010 AGGGATCGTGATCAGAGATATATCC 58.932 44.000 9.18 10.29 39.54 2.59
4073 4860 6.039159 TCGTGATCAGAGATATATCCATCTGC 59.961 42.308 19.91 11.83 39.21 4.26
4074 4861 6.514947 GTGATCAGAGATATATCCATCTGCC 58.485 44.000 19.91 15.72 39.21 4.85
4075 4862 6.324512 GTGATCAGAGATATATCCATCTGCCT 59.675 42.308 19.91 13.03 39.21 4.75
4076 4863 7.505248 GTGATCAGAGATATATCCATCTGCCTA 59.495 40.741 19.91 9.34 39.21 3.93
4084 4871 2.088104 TCCATCTGCCTACCTACCTG 57.912 55.000 0.00 0.00 0.00 4.00
4221 5008 2.729028 CCCCCTGAACCAAACGATAT 57.271 50.000 0.00 0.00 0.00 1.63
4223 5010 3.740115 CCCCCTGAACCAAACGATATAG 58.260 50.000 0.00 0.00 0.00 1.31
4224 5011 3.135895 CCCCCTGAACCAAACGATATAGT 59.864 47.826 0.00 0.00 0.00 2.12
4225 5012 4.345837 CCCCCTGAACCAAACGATATAGTA 59.654 45.833 0.00 0.00 0.00 1.82
4226 5013 5.510861 CCCCCTGAACCAAACGATATAGTAG 60.511 48.000 0.00 0.00 0.00 2.57
4227 5014 5.070047 CCCCTGAACCAAACGATATAGTAGT 59.930 44.000 0.00 0.00 0.00 2.73
4228 5015 6.266103 CCCCTGAACCAAACGATATAGTAGTA 59.734 42.308 0.00 0.00 0.00 1.82
4254 5042 8.940768 TTTGTTTAATTTTCTTGGTTCAGGAG 57.059 30.769 0.00 0.00 0.00 3.69
4255 5043 7.049799 TGTTTAATTTTCTTGGTTCAGGAGG 57.950 36.000 0.00 0.00 0.00 4.30
4256 5044 6.041523 TGTTTAATTTTCTTGGTTCAGGAGGG 59.958 38.462 0.00 0.00 0.00 4.30
4257 5045 1.995376 TTTTCTTGGTTCAGGAGGGC 58.005 50.000 0.00 0.00 0.00 5.19
4258 5046 0.112412 TTTCTTGGTTCAGGAGGGCC 59.888 55.000 0.00 0.00 0.00 5.80
4260 5048 0.772124 TCTTGGTTCAGGAGGGCCTT 60.772 55.000 7.89 0.00 43.90 4.35
4261 5049 0.991920 CTTGGTTCAGGAGGGCCTTA 59.008 55.000 7.89 0.00 43.90 2.69
4262 5050 0.696501 TTGGTTCAGGAGGGCCTTAC 59.303 55.000 7.89 3.93 43.90 2.34
4263 5051 0.178873 TGGTTCAGGAGGGCCTTACT 60.179 55.000 7.89 6.70 43.90 2.24
4264 5052 1.079825 TGGTTCAGGAGGGCCTTACTA 59.920 52.381 7.89 0.00 43.90 1.82
4265 5053 1.485480 GGTTCAGGAGGGCCTTACTAC 59.515 57.143 7.89 5.57 43.90 2.73
4266 5054 2.468915 GTTCAGGAGGGCCTTACTACT 58.531 52.381 7.89 0.00 43.90 2.57
4267 5055 3.629282 GGTTCAGGAGGGCCTTACTACTA 60.629 52.174 7.89 0.00 43.90 1.82
4281 5069 9.699703 GGCCTTACTACTATAAAGAAGAATCTG 57.300 37.037 0.00 0.00 35.59 2.90
4290 5078 8.862085 ACTATAAAGAAGAATCTGGCTAGGTAC 58.138 37.037 0.00 0.00 35.59 3.34
4292 5080 6.567602 AAAGAAGAATCTGGCTAGGTACAT 57.432 37.500 0.00 0.00 35.59 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.915604 CCTCATATCCCAGCCCAACTAT 59.084 50.000 0.00 0.00 0.00 2.12
1 2 2.338809 CCTCATATCCCAGCCCAACTA 58.661 52.381 0.00 0.00 0.00 2.24
2 3 1.143813 CCTCATATCCCAGCCCAACT 58.856 55.000 0.00 0.00 0.00 3.16
3 4 0.111253 CCCTCATATCCCAGCCCAAC 59.889 60.000 0.00 0.00 0.00 3.77
4 5 1.067762 CCCCTCATATCCCAGCCCAA 61.068 60.000 0.00 0.00 0.00 4.12
5 6 1.464001 CCCCTCATATCCCAGCCCA 60.464 63.158 0.00 0.00 0.00 5.36
6 7 1.464198 ACCCCTCATATCCCAGCCC 60.464 63.158 0.00 0.00 0.00 5.19
7 8 1.763770 CACCCCTCATATCCCAGCC 59.236 63.158 0.00 0.00 0.00 4.85
8 9 1.073897 GCACCCCTCATATCCCAGC 59.926 63.158 0.00 0.00 0.00 4.85
9 10 1.763770 GGCACCCCTCATATCCCAG 59.236 63.158 0.00 0.00 0.00 4.45
10 11 2.146724 CGGCACCCCTCATATCCCA 61.147 63.158 0.00 0.00 0.00 4.37
11 12 2.750350 CGGCACCCCTCATATCCC 59.250 66.667 0.00 0.00 0.00 3.85
12 13 2.113243 GACCGGCACCCCTCATATCC 62.113 65.000 0.00 0.00 0.00 2.59
13 14 1.371558 GACCGGCACCCCTCATATC 59.628 63.158 0.00 0.00 0.00 1.63
14 15 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
15 16 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
16 17 3.402681 CTGACCGGCACCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
38 39 4.660938 GGGCGGATATGGGGGCAC 62.661 72.222 0.00 0.00 0.00 5.01
41 42 0.993509 ATATGGGGCGGATATGGGGG 60.994 60.000 0.00 0.00 0.00 5.40
42 43 0.926293 AATATGGGGCGGATATGGGG 59.074 55.000 0.00 0.00 0.00 4.96
43 44 2.760092 CAAAATATGGGGCGGATATGGG 59.240 50.000 0.00 0.00 0.00 4.00
44 45 3.430453 ACAAAATATGGGGCGGATATGG 58.570 45.455 0.00 0.00 0.00 2.74
45 46 4.156556 CAGACAAAATATGGGGCGGATATG 59.843 45.833 0.00 0.00 0.00 1.78
46 47 4.335416 CAGACAAAATATGGGGCGGATAT 58.665 43.478 0.00 0.00 0.00 1.63
47 48 3.497763 CCAGACAAAATATGGGGCGGATA 60.498 47.826 0.00 0.00 35.88 2.59
48 49 2.586425 CAGACAAAATATGGGGCGGAT 58.414 47.619 0.00 0.00 0.00 4.18
49 50 1.409521 CCAGACAAAATATGGGGCGGA 60.410 52.381 0.00 0.00 35.88 5.54
50 51 1.032014 CCAGACAAAATATGGGGCGG 58.968 55.000 0.00 0.00 35.88 6.13
55 56 5.948162 CCCTCATATCCCAGACAAAATATGG 59.052 44.000 0.00 0.00 39.65 2.74
56 57 6.782986 TCCCTCATATCCCAGACAAAATATG 58.217 40.000 0.00 0.00 34.73 1.78
57 58 7.408543 CATCCCTCATATCCCAGACAAAATAT 58.591 38.462 0.00 0.00 0.00 1.28
58 59 6.748045 GCATCCCTCATATCCCAGACAAAATA 60.748 42.308 0.00 0.00 0.00 1.40
59 60 5.638133 CATCCCTCATATCCCAGACAAAAT 58.362 41.667 0.00 0.00 0.00 1.82
60 61 4.689705 GCATCCCTCATATCCCAGACAAAA 60.690 45.833 0.00 0.00 0.00 2.44
61 62 3.181440 GCATCCCTCATATCCCAGACAAA 60.181 47.826 0.00 0.00 0.00 2.83
62 63 2.373169 GCATCCCTCATATCCCAGACAA 59.627 50.000 0.00 0.00 0.00 3.18
63 64 1.980765 GCATCCCTCATATCCCAGACA 59.019 52.381 0.00 0.00 0.00 3.41
64 65 1.280421 GGCATCCCTCATATCCCAGAC 59.720 57.143 0.00 0.00 0.00 3.51
65 66 1.661463 GGCATCCCTCATATCCCAGA 58.339 55.000 0.00 0.00 0.00 3.86
66 67 0.251354 CGGCATCCCTCATATCCCAG 59.749 60.000 0.00 0.00 0.00 4.45
67 68 1.200760 CCGGCATCCCTCATATCCCA 61.201 60.000 0.00 0.00 0.00 4.37
68 69 1.201429 ACCGGCATCCCTCATATCCC 61.201 60.000 0.00 0.00 0.00 3.85
69 70 0.250513 GACCGGCATCCCTCATATCC 59.749 60.000 0.00 0.00 0.00 2.59
70 71 0.976641 TGACCGGCATCCCTCATATC 59.023 55.000 0.00 0.00 0.00 1.63
71 72 0.979665 CTGACCGGCATCCCTCATAT 59.020 55.000 0.00 0.00 0.00 1.78
72 73 1.121407 CCTGACCGGCATCCCTCATA 61.121 60.000 0.00 0.00 0.00 2.15
73 74 2.446848 CCTGACCGGCATCCCTCAT 61.447 63.158 0.00 0.00 0.00 2.90
74 75 3.083349 CCTGACCGGCATCCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
98 99 4.660938 GTGGGGCGGATATGGGGC 62.661 72.222 0.00 0.00 0.00 5.80
99 100 2.080336 AATGTGGGGCGGATATGGGG 62.080 60.000 0.00 0.00 0.00 4.96
100 101 0.178964 AAATGTGGGGCGGATATGGG 60.179 55.000 0.00 0.00 0.00 4.00
101 102 0.961019 CAAATGTGGGGCGGATATGG 59.039 55.000 0.00 0.00 0.00 2.74
102 103 0.961019 CCAAATGTGGGGCGGATATG 59.039 55.000 0.00 0.00 41.77 1.78
103 104 3.437642 CCAAATGTGGGGCGGATAT 57.562 52.632 0.00 0.00 41.77 1.63
104 105 4.997884 CCAAATGTGGGGCGGATA 57.002 55.556 0.00 0.00 41.77 2.59
113 114 4.139786 CCTCATATCCCAGACCAAATGTG 58.860 47.826 0.00 0.00 0.00 3.21
114 115 3.139025 CCCTCATATCCCAGACCAAATGT 59.861 47.826 0.00 0.00 0.00 2.71
115 116 3.139025 ACCCTCATATCCCAGACCAAATG 59.861 47.826 0.00 0.00 0.00 2.32
116 117 3.407209 ACCCTCATATCCCAGACCAAAT 58.593 45.455 0.00 0.00 0.00 2.32
117 118 2.858644 ACCCTCATATCCCAGACCAAA 58.141 47.619 0.00 0.00 0.00 3.28
118 119 2.509548 CAACCCTCATATCCCAGACCAA 59.490 50.000 0.00 0.00 0.00 3.67
119 120 2.126882 CAACCCTCATATCCCAGACCA 58.873 52.381 0.00 0.00 0.00 4.02
120 121 1.202818 GCAACCCTCATATCCCAGACC 60.203 57.143 0.00 0.00 0.00 3.85
121 122 1.202818 GGCAACCCTCATATCCCAGAC 60.203 57.143 0.00 0.00 0.00 3.51
122 123 1.140312 GGCAACCCTCATATCCCAGA 58.860 55.000 0.00 0.00 0.00 3.86
123 124 0.250467 CGGCAACCCTCATATCCCAG 60.250 60.000 0.00 0.00 0.00 4.45
124 125 1.705002 CCGGCAACCCTCATATCCCA 61.705 60.000 0.00 0.00 0.00 4.37
125 126 1.073199 CCGGCAACCCTCATATCCC 59.927 63.158 0.00 0.00 0.00 3.85
126 127 0.250338 GACCGGCAACCCTCATATCC 60.250 60.000 0.00 0.00 0.00 2.59
127 128 0.468226 TGACCGGCAACCCTCATATC 59.532 55.000 0.00 0.00 0.00 1.63
128 129 0.180406 GTGACCGGCAACCCTCATAT 59.820 55.000 0.00 0.00 0.00 1.78
129 130 1.600107 GTGACCGGCAACCCTCATA 59.400 57.895 0.00 0.00 0.00 2.15
130 131 2.351276 GTGACCGGCAACCCTCAT 59.649 61.111 0.00 0.00 0.00 2.90
131 132 3.948719 GGTGACCGGCAACCCTCA 61.949 66.667 14.03 0.36 0.00 3.86
150 151 3.883744 AACAGGTCTCAAGCGCCCG 62.884 63.158 2.29 0.00 0.00 6.13
151 152 1.600916 AAACAGGTCTCAAGCGCCC 60.601 57.895 2.29 0.00 0.00 6.13
152 153 0.884704 TCAAACAGGTCTCAAGCGCC 60.885 55.000 2.29 0.00 0.00 6.53
153 154 0.514691 CTCAAACAGGTCTCAAGCGC 59.485 55.000 0.00 0.00 0.00 5.92
154 155 1.151668 CCTCAAACAGGTCTCAAGCG 58.848 55.000 0.00 0.00 37.53 4.68
177 178 1.800681 GAAATTTCGACCCAGCCGG 59.199 57.895 1.68 0.00 37.81 6.13
188 189 0.519961 CCACCCGGTCACGAAATTTC 59.480 55.000 8.20 8.20 44.60 2.17
189 190 1.520600 GCCACCCGGTCACGAAATTT 61.521 55.000 0.00 0.00 44.60 1.82
190 191 1.969589 GCCACCCGGTCACGAAATT 60.970 57.895 0.00 0.00 44.60 1.82
191 192 2.359478 GCCACCCGGTCACGAAAT 60.359 61.111 0.00 0.00 44.60 2.17
192 193 4.629523 GGCCACCCGGTCACGAAA 62.630 66.667 0.00 0.00 44.60 3.46
209 210 2.824041 CATCAAACTCCCGGGCGG 60.824 66.667 18.49 13.97 0.00 6.13
210 211 1.815421 CTCATCAAACTCCCGGGCG 60.815 63.158 18.49 13.88 0.00 6.13
211 212 1.452108 CCTCATCAAACTCCCGGGC 60.452 63.158 18.49 0.00 0.00 6.13
212 213 1.224592 CCCTCATCAAACTCCCGGG 59.775 63.158 16.85 16.85 0.00 5.73
213 214 0.328258 AACCCTCATCAAACTCCCGG 59.672 55.000 0.00 0.00 0.00 5.73
214 215 1.812571 CAAACCCTCATCAAACTCCCG 59.187 52.381 0.00 0.00 0.00 5.14
215 216 3.084786 CTCAAACCCTCATCAAACTCCC 58.915 50.000 0.00 0.00 0.00 4.30
216 217 4.021102 TCTCAAACCCTCATCAAACTCC 57.979 45.455 0.00 0.00 0.00 3.85
217 218 4.142513 GCATCTCAAACCCTCATCAAACTC 60.143 45.833 0.00 0.00 0.00 3.01
218 219 3.760684 GCATCTCAAACCCTCATCAAACT 59.239 43.478 0.00 0.00 0.00 2.66
219 220 3.119352 GGCATCTCAAACCCTCATCAAAC 60.119 47.826 0.00 0.00 0.00 2.93
220 221 3.091545 GGCATCTCAAACCCTCATCAAA 58.908 45.455 0.00 0.00 0.00 2.69
221 222 2.621407 GGGCATCTCAAACCCTCATCAA 60.621 50.000 0.00 0.00 40.75 2.57
222 223 1.064463 GGGCATCTCAAACCCTCATCA 60.064 52.381 0.00 0.00 40.75 3.07
223 224 1.685148 GGGCATCTCAAACCCTCATC 58.315 55.000 0.00 0.00 40.75 2.92
224 225 0.107017 CGGGCATCTCAAACCCTCAT 60.107 55.000 0.00 0.00 41.86 2.90
225 226 1.299648 CGGGCATCTCAAACCCTCA 59.700 57.895 0.00 0.00 41.86 3.86
226 227 0.322546 AACGGGCATCTCAAACCCTC 60.323 55.000 0.00 0.00 41.86 4.30
227 228 0.609131 CAACGGGCATCTCAAACCCT 60.609 55.000 0.00 0.00 41.86 4.34
228 229 0.893727 ACAACGGGCATCTCAAACCC 60.894 55.000 0.00 0.00 40.51 4.11
229 230 1.737793 CTACAACGGGCATCTCAAACC 59.262 52.381 0.00 0.00 0.00 3.27
230 231 2.695359 TCTACAACGGGCATCTCAAAC 58.305 47.619 0.00 0.00 0.00 2.93
231 232 3.270027 CATCTACAACGGGCATCTCAAA 58.730 45.455 0.00 0.00 0.00 2.69
232 233 2.905075 CATCTACAACGGGCATCTCAA 58.095 47.619 0.00 0.00 0.00 3.02
233 234 1.473257 GCATCTACAACGGGCATCTCA 60.473 52.381 0.00 0.00 0.00 3.27
234 235 1.202580 AGCATCTACAACGGGCATCTC 60.203 52.381 0.00 0.00 0.00 2.75
235 236 0.833287 AGCATCTACAACGGGCATCT 59.167 50.000 0.00 0.00 0.00 2.90
236 237 0.940126 CAGCATCTACAACGGGCATC 59.060 55.000 0.00 0.00 0.00 3.91
237 238 0.253044 ACAGCATCTACAACGGGCAT 59.747 50.000 0.00 0.00 0.00 4.40
238 239 0.036164 AACAGCATCTACAACGGGCA 59.964 50.000 0.00 0.00 0.00 5.36
239 240 1.933853 CTAACAGCATCTACAACGGGC 59.066 52.381 0.00 0.00 0.00 6.13
240 241 3.247006 ACTAACAGCATCTACAACGGG 57.753 47.619 0.00 0.00 0.00 5.28
241 242 5.244785 TCTACTAACAGCATCTACAACGG 57.755 43.478 0.00 0.00 0.00 4.44
242 243 5.687730 CCATCTACTAACAGCATCTACAACG 59.312 44.000 0.00 0.00 0.00 4.10
243 244 6.806751 TCCATCTACTAACAGCATCTACAAC 58.193 40.000 0.00 0.00 0.00 3.32
244 245 7.124298 ACTTCCATCTACTAACAGCATCTACAA 59.876 37.037 0.00 0.00 0.00 2.41
245 246 6.607600 ACTTCCATCTACTAACAGCATCTACA 59.392 38.462 0.00 0.00 0.00 2.74
246 247 6.920758 CACTTCCATCTACTAACAGCATCTAC 59.079 42.308 0.00 0.00 0.00 2.59
247 248 6.607600 ACACTTCCATCTACTAACAGCATCTA 59.392 38.462 0.00 0.00 0.00 1.98
248 249 5.423610 ACACTTCCATCTACTAACAGCATCT 59.576 40.000 0.00 0.00 0.00 2.90
249 250 5.665459 ACACTTCCATCTACTAACAGCATC 58.335 41.667 0.00 0.00 0.00 3.91
250 251 5.683876 ACACTTCCATCTACTAACAGCAT 57.316 39.130 0.00 0.00 0.00 3.79
251 252 6.599356 TTACACTTCCATCTACTAACAGCA 57.401 37.500 0.00 0.00 0.00 4.41
252 253 7.321153 TCTTTACACTTCCATCTACTAACAGC 58.679 38.462 0.00 0.00 0.00 4.40
253 254 9.877178 AATCTTTACACTTCCATCTACTAACAG 57.123 33.333 0.00 0.00 0.00 3.16
263 264 7.765695 ATGTGTCAAATCTTTACACTTCCAT 57.234 32.000 0.00 0.00 43.09 3.41
266 267 7.915397 ACACAATGTGTCAAATCTTTACACTTC 59.085 33.333 13.98 0.00 43.92 3.01
317 318 6.034577 GCACTGTTTAACAAAACTCCAGAAAC 59.965 38.462 0.00 0.00 33.95 2.78
368 376 2.079925 GCATCACTTCTCCTTCACCAC 58.920 52.381 0.00 0.00 0.00 4.16
371 379 4.393371 GGTTTAGCATCACTTCTCCTTCAC 59.607 45.833 0.00 0.00 0.00 3.18
376 384 4.207891 TCTGGTTTAGCATCACTTCTCC 57.792 45.455 0.00 0.00 0.00 3.71
395 403 6.004574 GTGGATTTGTCCCTCTAAAACTTCT 58.995 40.000 0.00 0.00 0.00 2.85
403 411 2.092429 GGCATGTGGATTTGTCCCTCTA 60.092 50.000 0.00 0.00 0.00 2.43
432 443 4.803088 TCCTCGCAAAACAACAAAAATGAG 59.197 37.500 0.00 0.00 0.00 2.90
444 455 3.602489 GCGTCTAAATTTCCTCGCAAAAC 59.398 43.478 20.54 0.95 42.54 2.43
506 517 1.077716 GCACGTTCCTGGCCCTATT 60.078 57.895 0.00 0.00 0.00 1.73
508 519 4.077184 CGCACGTTCCTGGCCCTA 62.077 66.667 0.00 0.00 0.00 3.53
525 536 0.850217 CGCAATATGCTTGCATGCAC 59.150 50.000 27.41 10.94 46.33 4.57
526 537 0.739561 TCGCAATATGCTTGCATGCA 59.260 45.000 27.09 27.09 45.14 3.96
531 542 3.951306 TGTGTATTCGCAATATGCTTGC 58.049 40.909 0.43 0.00 42.25 4.01
532 543 3.970610 GCTGTGTATTCGCAATATGCTTG 59.029 43.478 0.43 0.00 42.25 4.01
533 544 3.879295 AGCTGTGTATTCGCAATATGCTT 59.121 39.130 0.43 0.00 42.25 3.91
534 545 3.470709 AGCTGTGTATTCGCAATATGCT 58.529 40.909 0.43 0.00 42.25 3.79
535 546 3.885484 AGCTGTGTATTCGCAATATGC 57.115 42.857 0.00 0.00 40.69 3.14
550 561 6.935741 TTGTGTTTTACTATCACAAGCTGT 57.064 33.333 5.97 0.00 43.82 4.40
555 566 7.086230 ACGGTTTTGTGTTTTACTATCACAA 57.914 32.000 5.97 5.97 45.90 3.33
561 572 6.414408 TTCGAACGGTTTTGTGTTTTACTA 57.586 33.333 0.00 0.00 0.00 1.82
576 587 1.428448 TGCATGAGAGTTTCGAACGG 58.572 50.000 0.00 0.00 36.23 4.44
578 589 4.871993 ATCATGCATGAGAGTTTCGAAC 57.128 40.909 31.36 0.00 40.64 3.95
579 590 5.225899 CAATCATGCATGAGAGTTTCGAA 57.774 39.130 31.36 7.64 40.64 3.71
580 591 4.870221 CAATCATGCATGAGAGTTTCGA 57.130 40.909 31.36 8.38 40.64 3.71
596 607 1.010238 CACACAACGTGCGCAATCA 60.010 52.632 14.00 0.00 39.19 2.57
597 608 3.814009 CACACAACGTGCGCAATC 58.186 55.556 14.00 0.00 39.19 2.67
605 616 1.229428 CCTGATGAAGCACACAACGT 58.771 50.000 0.00 0.00 0.00 3.99
606 617 0.110056 GCCTGATGAAGCACACAACG 60.110 55.000 0.00 0.00 0.00 4.10
607 618 1.198637 GAGCCTGATGAAGCACACAAC 59.801 52.381 0.00 0.00 0.00 3.32
608 619 1.072806 AGAGCCTGATGAAGCACACAA 59.927 47.619 0.00 0.00 0.00 3.33
609 620 0.689055 AGAGCCTGATGAAGCACACA 59.311 50.000 0.00 0.00 0.00 3.72
610 621 1.085091 CAGAGCCTGATGAAGCACAC 58.915 55.000 0.00 0.00 32.44 3.82
612 623 0.675837 TGCAGAGCCTGATGAAGCAC 60.676 55.000 6.40 0.00 32.44 4.40
613 624 0.675837 GTGCAGAGCCTGATGAAGCA 60.676 55.000 6.40 0.00 32.44 3.91
614 625 0.392729 AGTGCAGAGCCTGATGAAGC 60.393 55.000 6.40 0.00 32.44 3.86
615 626 1.370609 CAGTGCAGAGCCTGATGAAG 58.629 55.000 6.40 0.00 32.44 3.02
616 627 0.675837 GCAGTGCAGAGCCTGATGAA 60.676 55.000 11.09 0.00 32.44 2.57
619 656 2.125229 CGCAGTGCAGAGCCTGAT 60.125 61.111 16.83 0.00 32.44 2.90
630 667 4.771356 GCATGCAGTGGCGCAGTG 62.771 66.667 14.21 9.96 46.99 3.66
632 669 4.476410 CTGCATGCAGTGGCGCAG 62.476 66.667 34.76 11.96 46.99 5.18
657 694 0.179207 TGAAAGATCCGACGTCGACG 60.179 55.000 37.65 34.58 43.02 5.12
658 695 1.257539 GTGAAAGATCCGACGTCGAC 58.742 55.000 37.65 25.84 43.02 4.20
659 696 0.876399 TGTGAAAGATCCGACGTCGA 59.124 50.000 37.65 23.58 43.02 4.20
660 697 0.982673 GTGTGAAAGATCCGACGTCG 59.017 55.000 30.33 30.33 39.44 5.12
661 698 1.347320 GGTGTGAAAGATCCGACGTC 58.653 55.000 5.18 5.18 0.00 4.34
662 699 0.037605 GGGTGTGAAAGATCCGACGT 60.038 55.000 0.00 0.00 0.00 4.34
664 701 0.739813 CGGGGTGTGAAAGATCCGAC 60.740 60.000 0.00 0.00 39.83 4.79
665 702 1.189524 ACGGGGTGTGAAAGATCCGA 61.190 55.000 6.57 0.00 40.53 4.55
666 703 0.533491 TACGGGGTGTGAAAGATCCG 59.467 55.000 0.00 0.00 42.69 4.18
668 705 1.276989 TGGTACGGGGTGTGAAAGATC 59.723 52.381 0.00 0.00 0.00 2.75
669 706 1.354101 TGGTACGGGGTGTGAAAGAT 58.646 50.000 0.00 0.00 0.00 2.40
672 729 2.290197 GGTATTGGTACGGGGTGTGAAA 60.290 50.000 0.00 0.00 0.00 2.69
681 738 2.158813 AGGCTTGATGGTATTGGTACGG 60.159 50.000 0.00 0.00 0.00 4.02
686 743 3.129287 GTGTGAAGGCTTGATGGTATTGG 59.871 47.826 3.46 0.00 0.00 3.16
687 744 3.181507 CGTGTGAAGGCTTGATGGTATTG 60.182 47.826 3.46 0.00 0.00 1.90
688 745 3.009723 CGTGTGAAGGCTTGATGGTATT 58.990 45.455 3.46 0.00 0.00 1.89
689 746 2.236146 TCGTGTGAAGGCTTGATGGTAT 59.764 45.455 3.46 0.00 0.00 2.73
746 822 3.353557 AGCCGGAGTAAATTTTCTTCCC 58.646 45.455 5.05 0.00 0.00 3.97
747 823 3.063588 CGAGCCGGAGTAAATTTTCTTCC 59.936 47.826 5.05 0.83 0.00 3.46
748 824 3.485381 GCGAGCCGGAGTAAATTTTCTTC 60.485 47.826 5.05 0.00 0.00 2.87
749 825 2.418976 GCGAGCCGGAGTAAATTTTCTT 59.581 45.455 5.05 0.00 0.00 2.52
802 892 0.798771 GTGTTAGCCTCTCGCACTCG 60.799 60.000 0.00 0.00 41.38 4.18
803 893 0.798771 CGTGTTAGCCTCTCGCACTC 60.799 60.000 0.00 0.00 41.38 3.51
804 894 1.213013 CGTGTTAGCCTCTCGCACT 59.787 57.895 0.00 0.00 41.38 4.40
805 895 1.805945 CCGTGTTAGCCTCTCGCAC 60.806 63.158 0.00 0.00 41.38 5.34
806 896 1.934220 CTCCGTGTTAGCCTCTCGCA 61.934 60.000 0.00 0.00 41.38 5.10
807 897 1.226717 CTCCGTGTTAGCCTCTCGC 60.227 63.158 0.00 0.00 37.98 5.03
808 898 1.433879 CCTCCGTGTTAGCCTCTCG 59.566 63.158 0.00 0.00 0.00 4.04
882 998 1.608717 TTTTTGTGCCTGCCGTGGTT 61.609 50.000 0.00 0.00 0.00 3.67
967 1098 1.972795 TCCCACGGTGGTTATATAGGC 59.027 52.381 24.70 0.00 35.17 3.93
971 1102 0.105408 GCGTCCCACGGTGGTTATAT 59.895 55.000 24.70 0.00 42.82 0.86
972 1103 1.256361 TGCGTCCCACGGTGGTTATA 61.256 55.000 24.70 5.63 42.82 0.98
973 1104 2.266689 GCGTCCCACGGTGGTTAT 59.733 61.111 24.70 0.00 42.82 1.89
982 1113 3.050275 GCTTGGAGTGCGTCCCAC 61.050 66.667 2.57 0.00 46.31 4.61
984 1115 4.329545 TGGCTTGGAGTGCGTCCC 62.330 66.667 2.57 0.00 46.31 4.46
996 1127 2.591715 GTGTGTCGTGCCTGGCTT 60.592 61.111 21.03 0.00 0.00 4.35
1035 1166 2.296190 GGAGGGGTTTGTGATGTGTTTC 59.704 50.000 0.00 0.00 0.00 2.78
1036 1167 2.316108 GGAGGGGTTTGTGATGTGTTT 58.684 47.619 0.00 0.00 0.00 2.83
1064 1195 0.902516 GATGGATCGAGGGAGGGAGG 60.903 65.000 0.00 0.00 0.00 4.30
1065 1196 2.664825 GATGGATCGAGGGAGGGAG 58.335 63.158 0.00 0.00 0.00 4.30
1086 1220 3.589654 TTGCGGTCAGGGCGAGAAG 62.590 63.158 0.00 0.00 0.00 2.85
1624 1782 3.458163 TCGATGAGCCGGTCCACC 61.458 66.667 1.90 0.00 0.00 4.61
2086 2244 2.954753 CTGCCACCTCGCGTTGAAC 61.955 63.158 5.77 0.00 0.00 3.18
2112 2270 2.020131 CCGTCCATCATCAGCTTGC 58.980 57.895 0.00 0.00 0.00 4.01
2117 2275 0.873312 CTGTCGCCGTCCATCATCAG 60.873 60.000 0.00 0.00 0.00 2.90
2119 2277 2.240500 GCTGTCGCCGTCCATCATC 61.241 63.158 0.00 0.00 0.00 2.92
2133 2291 2.670934 CCCTCTTTGCAGCGCTGT 60.671 61.111 35.80 0.00 0.00 4.40
2136 2294 2.669569 TCACCCTCTTTGCAGCGC 60.670 61.111 0.00 0.00 0.00 5.92
2380 2550 1.203758 TCGTCAAGCCGCAGAAAGATA 59.796 47.619 0.00 0.00 0.00 1.98
2386 2556 2.355837 GTGTCGTCAAGCCGCAGA 60.356 61.111 0.00 0.00 0.00 4.26
2395 2565 4.308458 CCCTTGGGCGTGTCGTCA 62.308 66.667 0.00 0.00 30.88 4.35
2440 2610 4.885426 ATGGTCGACATGCCCATC 57.115 55.556 18.91 0.00 38.70 3.51
2656 2826 2.614983 GAGCGAGAAGTAGAGGAACGAT 59.385 50.000 0.00 0.00 0.00 3.73
2713 2883 2.028484 GCCGACAGGAACGTCACA 59.972 61.111 0.00 0.00 41.02 3.58
3205 3384 2.658285 ACGTAATGTATGCCGATCGAC 58.342 47.619 18.66 5.29 0.00 4.20
3308 3487 9.590451 AATTTATGATCATAAACAAGCCAGTTG 57.410 29.630 32.93 0.00 43.54 3.16
3309 3488 9.807649 GAATTTATGATCATAAACAAGCCAGTT 57.192 29.630 32.93 23.26 43.54 3.16
3310 3489 8.970020 TGAATTTATGATCATAAACAAGCCAGT 58.030 29.630 32.93 17.84 43.54 4.00
3311 3490 9.459640 CTGAATTTATGATCATAAACAAGCCAG 57.540 33.333 32.93 27.45 43.54 4.85
3312 3491 8.970020 ACTGAATTTATGATCATAAACAAGCCA 58.030 29.630 32.93 24.36 43.54 4.75
3350 3529 7.742089 CAGTAAGCAAAAGAACAATACTCGAAG 59.258 37.037 0.00 0.00 0.00 3.79
3353 3532 5.790495 GCAGTAAGCAAAAGAACAATACTCG 59.210 40.000 0.00 0.00 44.79 4.18
3373 3552 1.485480 CTCTGACCATCCAGATGCAGT 59.515 52.381 12.23 3.23 41.79 4.40
3398 3577 1.337387 GGGACATACGTAGGTCTCAGC 59.663 57.143 31.96 19.15 37.43 4.26
3400 3579 2.812836 TGGGACATACGTAGGTCTCA 57.187 50.000 32.70 32.70 44.23 3.27
3404 3583 3.097342 AGTCTTGGGACATACGTAGGT 57.903 47.619 13.46 13.46 44.36 3.08
3405 3584 3.782046 CAAGTCTTGGGACATACGTAGG 58.218 50.000 5.55 5.55 44.36 3.18
3406 3585 3.187700 GCAAGTCTTGGGACATACGTAG 58.812 50.000 14.40 0.00 44.36 3.51
3407 3586 2.563620 TGCAAGTCTTGGGACATACGTA 59.436 45.455 14.40 0.00 44.36 3.57
3412 3591 1.180029 GCATGCAAGTCTTGGGACAT 58.820 50.000 14.21 6.54 44.36 3.06
3423 3649 9.697250 CAATTTTATAATCACAAAGCATGCAAG 57.303 29.630 21.98 11.41 0.00 4.01
3424 3650 8.176365 GCAATTTTATAATCACAAAGCATGCAA 58.824 29.630 21.98 0.00 0.00 4.08
3426 3652 7.686519 TGCAATTTTATAATCACAAAGCATGC 58.313 30.769 10.51 10.51 0.00 4.06
3427 3653 9.644993 CATGCAATTTTATAATCACAAAGCATG 57.355 29.630 15.96 15.96 45.28 4.06
3428 3654 8.339714 GCATGCAATTTTATAATCACAAAGCAT 58.660 29.630 14.21 0.00 38.23 3.79
3429 3655 7.201626 GGCATGCAATTTTATAATCACAAAGCA 60.202 33.333 21.36 0.00 0.00 3.91
3430 3656 7.011669 AGGCATGCAATTTTATAATCACAAAGC 59.988 33.333 21.36 0.00 0.00 3.51
3569 3816 0.474660 AGAGCAGAGGGGGTTGTCTT 60.475 55.000 0.00 0.00 0.00 3.01
3578 3825 2.235650 TCATTCAGAACAGAGCAGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3676 3923 4.276431 CGAATCTAGAGGGTACAGGAAGAC 59.724 50.000 0.00 0.00 0.00 3.01
3689 3936 2.879002 TGAGGCTTGCGAATCTAGAG 57.121 50.000 0.00 0.00 0.00 2.43
3709 3956 8.729805 AAAGTGCAGTAAAATTTTGGATTTGA 57.270 26.923 13.76 0.00 0.00 2.69
3721 3968 9.646427 ACTGTCAAAAATAAAAGTGCAGTAAAA 57.354 25.926 0.00 0.00 33.60 1.52
3759 4468 0.311165 ACAGTCTCGTTGTCTGACGG 59.689 55.000 2.98 0.00 42.98 4.79
3901 4688 4.448395 CGTGTTTGACTTTGACGGGTAATA 59.552 41.667 0.00 0.00 0.00 0.98
3974 4761 2.281761 CAGACCAAACCGGCAGCT 60.282 61.111 0.00 0.00 39.03 4.24
4032 4819 2.746359 GATCCCTCCATCTGGCCG 59.254 66.667 0.00 0.00 34.44 6.13
4045 4832 6.951062 TGGATATATCTCTGATCACGATCC 57.049 41.667 12.42 4.21 37.02 3.36
4063 4850 3.779444 CAGGTAGGTAGGCAGATGGATA 58.221 50.000 0.00 0.00 0.00 2.59
4067 4854 0.394565 GGCAGGTAGGTAGGCAGATG 59.605 60.000 0.00 0.00 0.00 2.90
4073 4860 2.249139 GTAGATGGGCAGGTAGGTAGG 58.751 57.143 0.00 0.00 0.00 3.18
4074 4861 2.158295 AGGTAGATGGGCAGGTAGGTAG 60.158 54.545 0.00 0.00 0.00 3.18
4075 4862 1.864251 AGGTAGATGGGCAGGTAGGTA 59.136 52.381 0.00 0.00 0.00 3.08
4076 4863 0.642710 AGGTAGATGGGCAGGTAGGT 59.357 55.000 0.00 0.00 0.00 3.08
4084 4871 2.119495 TGGAGAGAAAGGTAGATGGGC 58.881 52.381 0.00 0.00 0.00 5.36
4119 4906 0.251386 AGTGGAGAAGCGTGAGGAGA 60.251 55.000 0.00 0.00 0.00 3.71
4170 4957 1.669760 TAGCCCAAACGCTCCAACG 60.670 57.895 0.00 0.00 40.39 4.10
4228 5015 9.546428 CTCCTGAACCAAGAAAATTAAACAAAT 57.454 29.630 0.00 0.00 0.00 2.32
4248 5036 5.674799 TTATAGTAGTAAGGCCCTCCTGA 57.325 43.478 0.00 0.00 43.40 3.86
4251 5039 6.781507 TCTTCTTTATAGTAGTAAGGCCCTCC 59.218 42.308 0.00 0.00 0.00 4.30
4252 5040 7.836479 TCTTCTTTATAGTAGTAAGGCCCTC 57.164 40.000 0.00 0.00 0.00 4.30
4253 5041 8.800515 ATTCTTCTTTATAGTAGTAAGGCCCT 57.199 34.615 0.00 0.00 0.00 5.19
4254 5042 8.872134 AGATTCTTCTTTATAGTAGTAAGGCCC 58.128 37.037 0.00 0.00 0.00 5.80
4255 5043 9.699703 CAGATTCTTCTTTATAGTAGTAAGGCC 57.300 37.037 0.00 0.00 0.00 5.19
4256 5044 9.699703 CCAGATTCTTCTTTATAGTAGTAAGGC 57.300 37.037 0.00 0.00 0.00 4.35
4257 5045 9.699703 GCCAGATTCTTCTTTATAGTAGTAAGG 57.300 37.037 0.00 0.00 0.00 2.69
4261 5049 9.084533 CCTAGCCAGATTCTTCTTTATAGTAGT 57.915 37.037 0.00 0.00 0.00 2.73
4262 5050 9.084533 ACCTAGCCAGATTCTTCTTTATAGTAG 57.915 37.037 0.00 0.00 0.00 2.57
4264 5052 7.922699 ACCTAGCCAGATTCTTCTTTATAGT 57.077 36.000 0.00 0.00 0.00 2.12
4265 5053 8.861086 TGTACCTAGCCAGATTCTTCTTTATAG 58.139 37.037 0.00 0.00 0.00 1.31
4266 5054 8.777578 TGTACCTAGCCAGATTCTTCTTTATA 57.222 34.615 0.00 0.00 0.00 0.98
4267 5055 7.676683 TGTACCTAGCCAGATTCTTCTTTAT 57.323 36.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.