Multiple sequence alignment - TraesCS1B01G063400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G063400 chr1B 100.000 4134 0 0 1 4134 48262793 48266926 0.000000e+00 7635.0
1 TraesCS1B01G063400 chr1B 92.623 122 9 0 3568 3689 332136276 332136155 4.250000e-40 176.0
2 TraesCS1B01G063400 chr1A 94.689 2184 93 12 1960 4134 30181055 30183224 0.000000e+00 3369.0
3 TraesCS1B01G063400 chr1A 87.500 1224 92 28 744 1959 30179839 30181009 0.000000e+00 1356.0
4 TraesCS1B01G063400 chr1D 93.997 1316 52 6 1960 3273 30092965 30094255 0.000000e+00 1967.0
5 TraesCS1B01G063400 chr1D 85.509 1394 109 35 581 1959 30091609 30092924 0.000000e+00 1369.0
6 TraesCS1B01G063400 chr1D 95.808 334 8 3 3683 4015 30095003 30095331 6.080000e-148 534.0
7 TraesCS1B01G063400 chr1D 91.558 154 8 1 3326 3474 30094257 30094410 1.510000e-49 207.0
8 TraesCS1B01G063400 chr1D 92.920 113 8 0 4014 4126 30095409 30095521 9.190000e-37 165.0
9 TraesCS1B01G063400 chr1D 97.619 84 2 0 3488 3571 30094920 30095003 1.200000e-30 145.0
10 TraesCS1B01G063400 chr6A 78.846 780 113 32 2575 3322 381110490 381109731 2.890000e-131 479.0
11 TraesCS1B01G063400 chr6A 80.000 625 94 15 979 1591 381112108 381111503 2.280000e-117 433.0
12 TraesCS1B01G063400 chr6A 80.212 566 87 17 2029 2579 381111115 381110560 6.440000e-108 401.0
13 TraesCS1B01G063400 chr6A 81.953 471 64 12 1476 1936 97750518 97750059 3.020000e-101 379.0
14 TraesCS1B01G063400 chr6A 86.134 238 24 5 1958 2193 97749997 97749767 8.870000e-62 248.0
15 TraesCS1B01G063400 chr6B 78.049 779 128 23 2576 3322 415889133 415888366 6.300000e-123 451.0
16 TraesCS1B01G063400 chr6B 79.936 628 89 22 959 1571 415890730 415890125 1.060000e-115 427.0
17 TraesCS1B01G063400 chr6B 81.928 415 52 10 2029 2430 415889717 415889313 3.080000e-86 329.0
18 TraesCS1B01G063400 chr6D 79.063 683 92 26 2672 3322 267536250 267535587 4.940000e-114 422.0
19 TraesCS1B01G063400 chr6D 96.078 51 2 0 1351 1401 132305178 132305228 2.650000e-12 84.2
20 TraesCS1B01G063400 chr5A 84.177 316 41 9 1351 1665 622420181 622420488 8.690000e-77 298.0
21 TraesCS1B01G063400 chr5A 88.496 113 12 1 2081 2193 680358787 680358676 7.210000e-28 135.0
22 TraesCS1B01G063400 chr5B 90.090 222 19 3 1972 2193 493089316 493089098 6.760000e-73 285.0
23 TraesCS1B01G063400 chr4A 91.176 136 10 2 3554 3688 467246472 467246606 2.540000e-42 183.0
24 TraesCS1B01G063400 chr4A 92.000 125 10 0 3560 3684 113861447 113861571 4.250000e-40 176.0
25 TraesCS1B01G063400 chr7B 93.443 122 8 0 3567 3688 145898579 145898458 9.130000e-42 182.0
26 TraesCS1B01G063400 chr7B 90.909 132 8 4 3564 3692 627984717 627984587 1.530000e-39 174.0
27 TraesCS1B01G063400 chr5D 94.068 118 7 0 3568 3685 308353351 308353468 3.280000e-41 180.0
28 TraesCS1B01G063400 chr5D 93.333 120 8 0 3566 3685 311311802 311311921 1.180000e-40 178.0
29 TraesCS1B01G063400 chr5D 89.381 113 11 1 2081 2193 152769693 152769582 1.550000e-29 141.0
30 TraesCS1B01G063400 chr5D 100.000 29 0 0 260 288 505903746 505903774 2.000000e-03 54.7
31 TraesCS1B01G063400 chr2B 89.552 134 12 2 3559 3692 85699382 85699513 7.110000e-38 169.0
32 TraesCS1B01G063400 chr2A 96.078 51 2 0 1351 1401 734969115 734969065 2.650000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G063400 chr1B 48262793 48266926 4133 False 7635.000000 7635 100.000000 1 4134 1 chr1B.!!$F1 4133
1 TraesCS1B01G063400 chr1A 30179839 30183224 3385 False 2362.500000 3369 91.094500 744 4134 2 chr1A.!!$F1 3390
2 TraesCS1B01G063400 chr1D 30091609 30095521 3912 False 731.166667 1967 92.901833 581 4126 6 chr1D.!!$F1 3545
3 TraesCS1B01G063400 chr6A 381109731 381112108 2377 True 437.666667 479 79.686000 979 3322 3 chr6A.!!$R2 2343
4 TraesCS1B01G063400 chr6A 97749767 97750518 751 True 313.500000 379 84.043500 1476 2193 2 chr6A.!!$R1 717
5 TraesCS1B01G063400 chr6B 415888366 415890730 2364 True 402.333333 451 79.971000 959 3322 3 chr6B.!!$R1 2363
6 TraesCS1B01G063400 chr6D 267535587 267536250 663 True 422.000000 422 79.063000 2672 3322 1 chr6D.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 531 0.027455 CGCACAGTTCTGCACGAAAA 59.973 50.0 8.65 0.00 36.94 2.29 F
1270 1291 0.093705 CTCTCGCAGTTTACGCTTGC 59.906 55.0 0.00 0.00 0.00 4.01 F
1811 1876 0.673644 AAGGCTCCGTTTGACATCGG 60.674 55.0 11.72 11.72 46.93 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1477 0.325296 TACATGAGAACCTCGCCCCT 60.325 55.0 0.00 0.0 32.35 4.79 R
2745 3015 2.325509 ATACACAAACGAAAAGCCGC 57.674 45.0 0.00 0.0 0.00 6.53 R
3577 4371 0.643820 CGCGACAAGTAATTCCGGAC 59.356 55.0 1.83 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.750148 ACTAGCCTTCATAAATAGAAGACCG 58.250 40.000 4.61 0.00 44.00 4.79
25 26 5.615925 AGCCTTCATAAATAGAAGACCGT 57.384 39.130 4.61 0.00 44.00 4.83
26 27 5.602628 AGCCTTCATAAATAGAAGACCGTC 58.397 41.667 4.61 0.00 44.00 4.79
27 28 5.128827 AGCCTTCATAAATAGAAGACCGTCA 59.871 40.000 0.40 0.00 44.00 4.35
28 29 5.992217 GCCTTCATAAATAGAAGACCGTCAT 59.008 40.000 0.40 0.00 44.00 3.06
29 30 6.146347 GCCTTCATAAATAGAAGACCGTCATC 59.854 42.308 0.40 0.00 44.00 2.92
30 31 7.210174 CCTTCATAAATAGAAGACCGTCATCA 58.790 38.462 6.54 0.00 44.00 3.07
31 32 7.383572 CCTTCATAAATAGAAGACCGTCATCAG 59.616 40.741 6.54 0.00 44.00 2.90
32 33 6.216569 TCATAAATAGAAGACCGTCATCAGC 58.783 40.000 6.54 0.00 0.00 4.26
33 34 4.471904 AAATAGAAGACCGTCATCAGCA 57.528 40.909 6.54 0.00 0.00 4.41
34 35 4.471904 AATAGAAGACCGTCATCAGCAA 57.528 40.909 6.54 0.00 0.00 3.91
35 36 2.839486 AGAAGACCGTCATCAGCAAA 57.161 45.000 6.54 0.00 0.00 3.68
36 37 3.126001 AGAAGACCGTCATCAGCAAAA 57.874 42.857 6.54 0.00 0.00 2.44
37 38 3.476552 AGAAGACCGTCATCAGCAAAAA 58.523 40.909 6.54 0.00 0.00 1.94
38 39 3.499918 AGAAGACCGTCATCAGCAAAAAG 59.500 43.478 6.54 0.00 0.00 2.27
39 40 1.537202 AGACCGTCATCAGCAAAAAGC 59.463 47.619 0.40 0.00 46.19 3.51
58 59 2.068519 GCAAATGGCTAACAAGCAACC 58.931 47.619 0.00 0.00 40.25 3.77
59 60 2.289010 GCAAATGGCTAACAAGCAACCT 60.289 45.455 0.00 0.00 40.25 3.50
60 61 3.803368 GCAAATGGCTAACAAGCAACCTT 60.803 43.478 0.00 0.00 40.25 3.50
61 62 3.942130 AATGGCTAACAAGCAACCTTC 57.058 42.857 0.00 0.00 36.33 3.46
62 63 2.656947 TGGCTAACAAGCAACCTTCT 57.343 45.000 0.00 0.00 36.33 2.85
63 64 2.944129 TGGCTAACAAGCAACCTTCTT 58.056 42.857 0.00 0.00 36.33 2.52
64 65 2.884639 TGGCTAACAAGCAACCTTCTTC 59.115 45.455 0.00 0.00 36.33 2.87
65 66 2.884639 GGCTAACAAGCAACCTTCTTCA 59.115 45.455 0.00 0.00 36.33 3.02
66 67 3.304726 GGCTAACAAGCAACCTTCTTCAC 60.305 47.826 0.00 0.00 36.33 3.18
67 68 3.315191 GCTAACAAGCAACCTTCTTCACA 59.685 43.478 0.00 0.00 34.41 3.58
68 69 4.202010 GCTAACAAGCAACCTTCTTCACAA 60.202 41.667 0.00 0.00 34.41 3.33
69 70 5.507985 GCTAACAAGCAACCTTCTTCACAAT 60.508 40.000 0.00 0.00 34.41 2.71
70 71 5.343307 AACAAGCAACCTTCTTCACAATT 57.657 34.783 0.00 0.00 0.00 2.32
71 72 6.463995 AACAAGCAACCTTCTTCACAATTA 57.536 33.333 0.00 0.00 0.00 1.40
72 73 6.463995 ACAAGCAACCTTCTTCACAATTAA 57.536 33.333 0.00 0.00 0.00 1.40
73 74 6.872920 ACAAGCAACCTTCTTCACAATTAAA 58.127 32.000 0.00 0.00 0.00 1.52
74 75 7.500141 ACAAGCAACCTTCTTCACAATTAAAT 58.500 30.769 0.00 0.00 0.00 1.40
75 76 7.653311 ACAAGCAACCTTCTTCACAATTAAATC 59.347 33.333 0.00 0.00 0.00 2.17
76 77 7.530426 AGCAACCTTCTTCACAATTAAATCT 57.470 32.000 0.00 0.00 0.00 2.40
77 78 7.955918 AGCAACCTTCTTCACAATTAAATCTT 58.044 30.769 0.00 0.00 0.00 2.40
78 79 8.424133 AGCAACCTTCTTCACAATTAAATCTTT 58.576 29.630 0.00 0.00 0.00 2.52
79 80 8.703336 GCAACCTTCTTCACAATTAAATCTTTC 58.297 33.333 0.00 0.00 0.00 2.62
80 81 9.196552 CAACCTTCTTCACAATTAAATCTTTCC 57.803 33.333 0.00 0.00 0.00 3.13
81 82 8.712228 ACCTTCTTCACAATTAAATCTTTCCT 57.288 30.769 0.00 0.00 0.00 3.36
82 83 9.807921 ACCTTCTTCACAATTAAATCTTTCCTA 57.192 29.630 0.00 0.00 0.00 2.94
96 97 8.727100 AAATCTTTCCTATTTCCTTTCAAGGT 57.273 30.769 5.48 0.00 46.54 3.50
97 98 7.946381 ATCTTTCCTATTTCCTTTCAAGGTC 57.054 36.000 5.48 0.00 46.54 3.85
98 99 6.848069 TCTTTCCTATTTCCTTTCAAGGTCA 58.152 36.000 5.48 0.00 46.54 4.02
99 100 7.294584 TCTTTCCTATTTCCTTTCAAGGTCAA 58.705 34.615 5.48 1.20 46.54 3.18
100 101 6.894339 TTCCTATTTCCTTTCAAGGTCAAC 57.106 37.500 5.48 0.00 46.54 3.18
101 102 5.947663 TCCTATTTCCTTTCAAGGTCAACA 58.052 37.500 5.48 0.00 46.54 3.33
102 103 6.369629 TCCTATTTCCTTTCAAGGTCAACAA 58.630 36.000 5.48 0.00 46.54 2.83
103 104 7.010160 TCCTATTTCCTTTCAAGGTCAACAAT 58.990 34.615 5.48 1.72 46.54 2.71
104 105 7.039784 TCCTATTTCCTTTCAAGGTCAACAATG 60.040 37.037 5.48 0.00 46.54 2.82
105 106 6.729690 ATTTCCTTTCAAGGTCAACAATGA 57.270 33.333 5.48 0.00 46.54 2.57
106 107 6.729690 TTTCCTTTCAAGGTCAACAATGAT 57.270 33.333 5.48 0.00 46.54 2.45
107 108 5.710513 TCCTTTCAAGGTCAACAATGATG 57.289 39.130 5.48 0.00 46.54 3.07
108 109 5.384336 TCCTTTCAAGGTCAACAATGATGA 58.616 37.500 5.48 0.00 46.54 2.92
109 110 5.241506 TCCTTTCAAGGTCAACAATGATGAC 59.758 40.000 14.21 14.21 46.54 3.06
118 119 6.506500 GTCAACAATGATGACAATCCTTCT 57.493 37.500 17.05 0.00 45.13 2.85
119 120 6.320171 GTCAACAATGATGACAATCCTTCTG 58.680 40.000 17.05 0.00 45.13 3.02
120 121 4.978083 ACAATGATGACAATCCTTCTGC 57.022 40.909 0.00 0.00 31.15 4.26
121 122 4.597004 ACAATGATGACAATCCTTCTGCT 58.403 39.130 0.00 0.00 31.15 4.24
122 123 4.398358 ACAATGATGACAATCCTTCTGCTG 59.602 41.667 0.00 0.00 31.15 4.41
123 124 2.362736 TGATGACAATCCTTCTGCTGC 58.637 47.619 0.00 0.00 31.15 5.25
124 125 2.290450 TGATGACAATCCTTCTGCTGCA 60.290 45.455 0.88 0.88 31.15 4.41
125 126 2.275134 TGACAATCCTTCTGCTGCAA 57.725 45.000 3.02 0.00 0.00 4.08
126 127 2.156917 TGACAATCCTTCTGCTGCAAG 58.843 47.619 3.02 0.00 0.00 4.01
127 128 2.157738 GACAATCCTTCTGCTGCAAGT 58.842 47.619 3.02 0.00 35.30 3.16
128 129 3.244526 TGACAATCCTTCTGCTGCAAGTA 60.245 43.478 3.02 0.00 35.30 2.24
129 130 3.753272 GACAATCCTTCTGCTGCAAGTAA 59.247 43.478 3.02 0.00 35.30 2.24
130 131 4.144297 ACAATCCTTCTGCTGCAAGTAAA 58.856 39.130 3.02 0.00 35.30 2.01
131 132 4.584325 ACAATCCTTCTGCTGCAAGTAAAA 59.416 37.500 3.02 0.00 35.30 1.52
132 133 5.068987 ACAATCCTTCTGCTGCAAGTAAAAA 59.931 36.000 3.02 0.00 35.30 1.94
133 134 5.990120 ATCCTTCTGCTGCAAGTAAAAAT 57.010 34.783 3.02 0.00 35.30 1.82
134 135 7.039784 ACAATCCTTCTGCTGCAAGTAAAAATA 60.040 33.333 3.02 0.00 35.30 1.40
135 136 6.500684 TCCTTCTGCTGCAAGTAAAAATAG 57.499 37.500 3.02 0.00 35.30 1.73
136 137 6.237901 TCCTTCTGCTGCAAGTAAAAATAGA 58.762 36.000 3.02 0.00 35.30 1.98
137 138 6.886459 TCCTTCTGCTGCAAGTAAAAATAGAT 59.114 34.615 3.02 0.00 35.30 1.98
138 139 8.046708 TCCTTCTGCTGCAAGTAAAAATAGATA 58.953 33.333 3.02 0.00 35.30 1.98
139 140 8.844244 CCTTCTGCTGCAAGTAAAAATAGATAT 58.156 33.333 3.02 0.00 35.30 1.63
140 141 9.661187 CTTCTGCTGCAAGTAAAAATAGATATG 57.339 33.333 3.02 0.00 35.30 1.78
141 142 8.158169 TCTGCTGCAAGTAAAAATAGATATGG 57.842 34.615 3.02 0.00 35.30 2.74
142 143 6.738114 TGCTGCAAGTAAAAATAGATATGGC 58.262 36.000 0.00 0.00 35.30 4.40
143 144 5.853282 GCTGCAAGTAAAAATAGATATGGCG 59.147 40.000 0.00 0.00 35.30 5.69
144 145 6.293407 GCTGCAAGTAAAAATAGATATGGCGA 60.293 38.462 0.00 0.00 35.30 5.54
145 146 7.189693 TGCAAGTAAAAATAGATATGGCGAG 57.810 36.000 0.00 0.00 0.00 5.03
146 147 6.989759 TGCAAGTAAAAATAGATATGGCGAGA 59.010 34.615 0.00 0.00 0.00 4.04
147 148 7.661437 TGCAAGTAAAAATAGATATGGCGAGAT 59.339 33.333 0.00 0.00 0.00 2.75
148 149 7.959651 GCAAGTAAAAATAGATATGGCGAGATG 59.040 37.037 0.00 0.00 0.00 2.90
149 150 9.208022 CAAGTAAAAATAGATATGGCGAGATGA 57.792 33.333 0.00 0.00 0.00 2.92
150 151 8.994429 AGTAAAAATAGATATGGCGAGATGAG 57.006 34.615 0.00 0.00 0.00 2.90
151 152 8.807118 AGTAAAAATAGATATGGCGAGATGAGA 58.193 33.333 0.00 0.00 0.00 3.27
152 153 9.593134 GTAAAAATAGATATGGCGAGATGAGAT 57.407 33.333 0.00 0.00 0.00 2.75
153 154 8.715191 AAAAATAGATATGGCGAGATGAGATC 57.285 34.615 0.00 0.00 0.00 2.75
154 155 7.658525 AAATAGATATGGCGAGATGAGATCT 57.341 36.000 0.00 0.00 43.70 2.75
164 165 3.304911 AGATGAGATCTCCCTGACGAA 57.695 47.619 20.03 0.00 33.42 3.85
165 166 3.843422 AGATGAGATCTCCCTGACGAAT 58.157 45.455 20.03 4.00 33.42 3.34
166 167 4.222336 AGATGAGATCTCCCTGACGAATT 58.778 43.478 20.03 0.00 33.42 2.17
167 168 4.280677 AGATGAGATCTCCCTGACGAATTC 59.719 45.833 20.03 0.00 33.42 2.17
168 169 2.695666 TGAGATCTCCCTGACGAATTCC 59.304 50.000 20.03 0.00 0.00 3.01
169 170 2.695666 GAGATCTCCCTGACGAATTCCA 59.304 50.000 12.00 0.00 0.00 3.53
170 171 2.432510 AGATCTCCCTGACGAATTCCAC 59.567 50.000 0.00 0.00 0.00 4.02
171 172 0.530744 TCTCCCTGACGAATTCCACG 59.469 55.000 0.00 0.00 0.00 4.94
172 173 0.460284 CTCCCTGACGAATTCCACGG 60.460 60.000 0.00 0.00 34.93 4.94
173 174 1.449601 CCCTGACGAATTCCACGGG 60.450 63.158 14.08 14.08 34.93 5.28
174 175 2.106683 CCTGACGAATTCCACGGGC 61.107 63.158 10.23 0.00 34.93 6.13
175 176 2.046700 TGACGAATTCCACGGGCC 60.047 61.111 0.00 0.00 34.93 5.80
176 177 3.192922 GACGAATTCCACGGGCCG 61.193 66.667 27.06 27.06 34.93 6.13
177 178 4.770874 ACGAATTCCACGGGCCGG 62.771 66.667 31.78 18.68 34.93 6.13
178 179 4.460683 CGAATTCCACGGGCCGGA 62.461 66.667 31.78 16.28 0.00 5.14
179 180 2.192175 GAATTCCACGGGCCGGAT 59.808 61.111 31.78 15.17 30.99 4.18
180 181 1.453197 GAATTCCACGGGCCGGATT 60.453 57.895 31.78 22.23 30.99 3.01
181 182 0.179040 GAATTCCACGGGCCGGATTA 60.179 55.000 31.78 13.20 30.99 1.75
182 183 0.256464 AATTCCACGGGCCGGATTAA 59.744 50.000 31.78 18.27 30.99 1.40
183 184 0.256464 ATTCCACGGGCCGGATTAAA 59.744 50.000 31.78 16.45 30.99 1.52
184 185 0.037877 TTCCACGGGCCGGATTAAAA 59.962 50.000 31.78 12.21 30.99 1.52
185 186 0.256464 TCCACGGGCCGGATTAAAAT 59.744 50.000 31.78 2.61 0.00 1.82
186 187 0.666374 CCACGGGCCGGATTAAAATC 59.334 55.000 31.78 0.00 34.66 2.17
201 202 7.252965 GATTAAAATCCTCAAGCTAGTCACC 57.747 40.000 0.00 0.00 0.00 4.02
202 203 2.969628 AATCCTCAAGCTAGTCACCG 57.030 50.000 0.00 0.00 0.00 4.94
203 204 1.853963 ATCCTCAAGCTAGTCACCGT 58.146 50.000 0.00 0.00 0.00 4.83
204 205 1.629043 TCCTCAAGCTAGTCACCGTT 58.371 50.000 0.00 0.00 0.00 4.44
205 206 2.799017 TCCTCAAGCTAGTCACCGTTA 58.201 47.619 0.00 0.00 0.00 3.18
206 207 3.159472 TCCTCAAGCTAGTCACCGTTAA 58.841 45.455 0.00 0.00 0.00 2.01
207 208 3.575256 TCCTCAAGCTAGTCACCGTTAAA 59.425 43.478 0.00 0.00 0.00 1.52
208 209 4.039488 TCCTCAAGCTAGTCACCGTTAAAA 59.961 41.667 0.00 0.00 0.00 1.52
209 210 4.753107 CCTCAAGCTAGTCACCGTTAAAAA 59.247 41.667 0.00 0.00 0.00 1.94
210 211 5.107065 CCTCAAGCTAGTCACCGTTAAAAAG 60.107 44.000 0.00 0.00 0.00 2.27
211 212 5.603596 TCAAGCTAGTCACCGTTAAAAAGA 58.396 37.500 0.00 0.00 0.00 2.52
212 213 6.050432 TCAAGCTAGTCACCGTTAAAAAGAA 58.950 36.000 0.00 0.00 0.00 2.52
213 214 5.919272 AGCTAGTCACCGTTAAAAAGAAC 57.081 39.130 0.00 0.00 0.00 3.01
214 215 5.608449 AGCTAGTCACCGTTAAAAAGAACT 58.392 37.500 0.00 0.00 0.00 3.01
215 216 6.752168 AGCTAGTCACCGTTAAAAAGAACTA 58.248 36.000 0.00 0.00 0.00 2.24
216 217 7.384477 AGCTAGTCACCGTTAAAAAGAACTAT 58.616 34.615 0.00 0.00 0.00 2.12
217 218 7.876582 AGCTAGTCACCGTTAAAAAGAACTATT 59.123 33.333 0.00 0.00 0.00 1.73
218 219 8.501580 GCTAGTCACCGTTAAAAAGAACTATTT 58.498 33.333 0.00 0.00 0.00 1.40
221 222 9.511144 AGTCACCGTTAAAAAGAACTATTTTTG 57.489 29.630 7.28 0.00 41.29 2.44
222 223 9.505995 GTCACCGTTAAAAAGAACTATTTTTGA 57.494 29.630 7.28 0.00 41.29 2.69
223 224 9.724839 TCACCGTTAAAAAGAACTATTTTTGAG 57.275 29.630 7.28 0.45 41.29 3.02
224 225 9.724839 CACCGTTAAAAAGAACTATTTTTGAGA 57.275 29.630 7.28 0.00 41.29 3.27
225 226 9.726232 ACCGTTAAAAAGAACTATTTTTGAGAC 57.274 29.630 7.28 3.76 41.29 3.36
226 227 9.724839 CCGTTAAAAAGAACTATTTTTGAGACA 57.275 29.630 7.28 0.00 41.29 3.41
262 263 9.793259 AGAACTTTCTTTTTGAGACATATACCA 57.207 29.630 0.00 0.00 32.55 3.25
316 317 8.900983 TTTTTAAGGGGATGAAAATGAAACAG 57.099 30.769 0.00 0.00 0.00 3.16
317 318 7.610580 TTTAAGGGGATGAAAATGAAACAGT 57.389 32.000 0.00 0.00 0.00 3.55
318 319 7.610580 TTAAGGGGATGAAAATGAAACAGTT 57.389 32.000 0.00 0.00 0.00 3.16
319 320 5.728637 AGGGGATGAAAATGAAACAGTTC 57.271 39.130 0.00 0.00 0.00 3.01
320 321 4.218417 AGGGGATGAAAATGAAACAGTTCG 59.782 41.667 0.00 0.00 36.46 3.95
321 322 4.022329 GGGGATGAAAATGAAACAGTTCGT 60.022 41.667 0.00 0.00 36.46 3.85
322 323 5.182380 GGGGATGAAAATGAAACAGTTCGTA 59.818 40.000 0.00 0.00 36.46 3.43
323 324 6.084277 GGGATGAAAATGAAACAGTTCGTAC 58.916 40.000 0.00 0.00 36.46 3.67
324 325 6.293735 GGGATGAAAATGAAACAGTTCGTACA 60.294 38.462 0.00 0.00 36.46 2.90
325 326 7.305474 GGATGAAAATGAAACAGTTCGTACAT 58.695 34.615 0.00 0.00 36.46 2.29
326 327 7.807907 GGATGAAAATGAAACAGTTCGTACATT 59.192 33.333 0.00 0.00 36.76 2.71
327 328 9.180678 GATGAAAATGAAACAGTTCGTACATTT 57.819 29.630 0.00 0.00 41.83 2.32
328 329 8.918961 TGAAAATGAAACAGTTCGTACATTTT 57.081 26.923 20.52 20.52 45.93 1.82
329 330 9.360093 TGAAAATGAAACAGTTCGTACATTTTT 57.640 25.926 20.92 12.68 44.81 1.94
368 369 8.935844 TGAAACAGTTCATACATACTTCATCAC 58.064 33.333 0.00 0.00 38.88 3.06
369 370 7.849804 AACAGTTCATACATACTTCATCACC 57.150 36.000 0.00 0.00 0.00 4.02
370 371 6.042777 ACAGTTCATACATACTTCATCACCG 58.957 40.000 0.00 0.00 0.00 4.94
371 372 6.127451 ACAGTTCATACATACTTCATCACCGA 60.127 38.462 0.00 0.00 0.00 4.69
372 373 6.925718 CAGTTCATACATACTTCATCACCGAT 59.074 38.462 0.00 0.00 0.00 4.18
373 374 6.925718 AGTTCATACATACTTCATCACCGATG 59.074 38.462 0.00 0.00 41.00 3.84
374 375 6.648879 TCATACATACTTCATCACCGATGA 57.351 37.500 2.56 2.56 45.78 2.92
384 385 5.309323 TCATCACCGATGAAATCCAAAAC 57.691 39.130 4.21 0.00 44.70 2.43
385 386 3.822594 TCACCGATGAAATCCAAAACG 57.177 42.857 0.00 0.00 41.39 3.60
386 387 2.095466 TCACCGATGAAATCCAAAACGC 60.095 45.455 0.00 0.00 41.39 4.84
387 388 1.883275 ACCGATGAAATCCAAAACGCA 59.117 42.857 0.00 0.00 41.39 5.24
388 389 2.095263 ACCGATGAAATCCAAAACGCAG 60.095 45.455 0.00 0.00 41.39 5.18
389 390 1.913403 CGATGAAATCCAAAACGCAGC 59.087 47.619 0.00 0.00 41.39 5.25
390 391 2.262211 GATGAAATCCAAAACGCAGCC 58.738 47.619 0.00 0.00 37.38 4.85
391 392 0.316841 TGAAATCCAAAACGCAGCCC 59.683 50.000 0.00 0.00 0.00 5.19
392 393 0.732538 GAAATCCAAAACGCAGCCCG 60.733 55.000 0.00 0.00 44.21 6.13
393 394 2.763627 AAATCCAAAACGCAGCCCGC 62.764 55.000 0.00 0.00 41.76 6.13
395 396 4.054825 CCAAAACGCAGCCCGCAT 62.055 61.111 0.00 0.00 42.60 4.73
396 397 2.695759 CCAAAACGCAGCCCGCATA 61.696 57.895 0.00 0.00 42.60 3.14
397 398 1.226379 CAAAACGCAGCCCGCATAG 60.226 57.895 0.00 0.00 42.60 2.23
398 399 3.051392 AAAACGCAGCCCGCATAGC 62.051 57.895 0.00 0.00 42.60 2.97
402 403 3.140141 GCAGCCCGCATAGCCAAA 61.140 61.111 0.00 0.00 41.79 3.28
403 404 2.709883 GCAGCCCGCATAGCCAAAA 61.710 57.895 0.00 0.00 41.79 2.44
404 405 1.139520 CAGCCCGCATAGCCAAAAC 59.860 57.895 0.00 0.00 0.00 2.43
405 406 1.304052 AGCCCGCATAGCCAAAACA 60.304 52.632 0.00 0.00 0.00 2.83
406 407 1.139520 GCCCGCATAGCCAAAACAG 59.860 57.895 0.00 0.00 0.00 3.16
407 408 1.312371 GCCCGCATAGCCAAAACAGA 61.312 55.000 0.00 0.00 0.00 3.41
408 409 0.734889 CCCGCATAGCCAAAACAGAG 59.265 55.000 0.00 0.00 0.00 3.35
409 410 0.734889 CCGCATAGCCAAAACAGAGG 59.265 55.000 0.00 0.00 0.00 3.69
414 415 4.118584 GCCAAAACAGAGGCCCAT 57.881 55.556 0.00 0.00 45.18 4.00
415 416 3.281332 GCCAAAACAGAGGCCCATA 57.719 52.632 0.00 0.00 45.18 2.74
416 417 1.780503 GCCAAAACAGAGGCCCATAT 58.219 50.000 0.00 0.00 45.18 1.78
417 418 2.944129 GCCAAAACAGAGGCCCATATA 58.056 47.619 0.00 0.00 45.18 0.86
418 419 3.295973 GCCAAAACAGAGGCCCATATAA 58.704 45.455 0.00 0.00 45.18 0.98
419 420 3.897505 GCCAAAACAGAGGCCCATATAAT 59.102 43.478 0.00 0.00 45.18 1.28
420 421 5.076873 GCCAAAACAGAGGCCCATATAATA 58.923 41.667 0.00 0.00 45.18 0.98
421 422 5.538433 GCCAAAACAGAGGCCCATATAATAA 59.462 40.000 0.00 0.00 45.18 1.40
422 423 6.041523 GCCAAAACAGAGGCCCATATAATAAA 59.958 38.462 0.00 0.00 45.18 1.40
423 424 7.433680 CCAAAACAGAGGCCCATATAATAAAC 58.566 38.462 0.00 0.00 0.00 2.01
424 425 7.069331 CCAAAACAGAGGCCCATATAATAAACA 59.931 37.037 0.00 0.00 0.00 2.83
425 426 7.823745 AAACAGAGGCCCATATAATAAACAG 57.176 36.000 0.00 0.00 0.00 3.16
426 427 5.880901 ACAGAGGCCCATATAATAAACAGG 58.119 41.667 0.00 0.00 0.00 4.00
427 428 5.610982 ACAGAGGCCCATATAATAAACAGGA 59.389 40.000 0.00 0.00 0.00 3.86
428 429 5.940470 CAGAGGCCCATATAATAAACAGGAC 59.060 44.000 0.00 0.00 0.00 3.85
429 430 5.610982 AGAGGCCCATATAATAAACAGGACA 59.389 40.000 0.00 0.00 0.00 4.02
430 431 6.102615 AGAGGCCCATATAATAAACAGGACAA 59.897 38.462 0.00 0.00 0.00 3.18
431 432 6.678547 AGGCCCATATAATAAACAGGACAAA 58.321 36.000 0.00 0.00 0.00 2.83
432 433 6.549736 AGGCCCATATAATAAACAGGACAAAC 59.450 38.462 0.00 0.00 0.00 2.93
433 434 6.322712 GGCCCATATAATAAACAGGACAAACA 59.677 38.462 0.00 0.00 0.00 2.83
434 435 7.200455 GCCCATATAATAAACAGGACAAACAC 58.800 38.462 0.00 0.00 0.00 3.32
435 436 7.147983 GCCCATATAATAAACAGGACAAACACA 60.148 37.037 0.00 0.00 0.00 3.72
436 437 8.188139 CCCATATAATAAACAGGACAAACACAC 58.812 37.037 0.00 0.00 0.00 3.82
437 438 8.188139 CCATATAATAAACAGGACAAACACACC 58.812 37.037 0.00 0.00 0.00 4.16
438 439 8.735315 CATATAATAAACAGGACAAACACACCA 58.265 33.333 0.00 0.00 0.00 4.17
439 440 4.911514 ATAAACAGGACAAACACACCAC 57.088 40.909 0.00 0.00 0.00 4.16
440 441 2.208132 AACAGGACAAACACACCACA 57.792 45.000 0.00 0.00 0.00 4.17
441 442 2.208132 ACAGGACAAACACACCACAA 57.792 45.000 0.00 0.00 0.00 3.33
442 443 2.091541 ACAGGACAAACACACCACAAG 58.908 47.619 0.00 0.00 0.00 3.16
443 444 1.102978 AGGACAAACACACCACAAGC 58.897 50.000 0.00 0.00 0.00 4.01
444 445 0.102300 GGACAAACACACCACAAGCC 59.898 55.000 0.00 0.00 0.00 4.35
445 446 0.248458 GACAAACACACCACAAGCCG 60.248 55.000 0.00 0.00 0.00 5.52
446 447 1.065600 CAAACACACCACAAGCCGG 59.934 57.895 0.00 0.00 0.00 6.13
447 448 1.077357 AAACACACCACAAGCCGGA 60.077 52.632 5.05 0.00 0.00 5.14
448 449 1.381165 AAACACACCACAAGCCGGAC 61.381 55.000 5.05 0.00 0.00 4.79
449 450 3.345808 CACACCACAAGCCGGACG 61.346 66.667 5.05 0.00 0.00 4.79
454 455 3.342627 CACAAGCCGGACGCGAAA 61.343 61.111 15.93 0.00 44.76 3.46
455 456 3.343421 ACAAGCCGGACGCGAAAC 61.343 61.111 15.93 3.33 44.76 2.78
467 468 3.037249 CGAAACGGGCCGACGAAA 61.037 61.111 35.78 0.00 37.61 3.46
468 469 2.858158 GAAACGGGCCGACGAAAG 59.142 61.111 35.78 0.83 37.61 2.62
469 470 1.665599 GAAACGGGCCGACGAAAGA 60.666 57.895 35.78 0.00 37.61 2.52
470 471 1.223417 GAAACGGGCCGACGAAAGAA 61.223 55.000 35.78 0.00 37.61 2.52
471 472 1.501337 AAACGGGCCGACGAAAGAAC 61.501 55.000 35.78 0.00 37.61 3.01
472 473 2.356553 CGGGCCGACGAAAGAACA 60.357 61.111 24.41 0.00 35.47 3.18
473 474 2.664436 CGGGCCGACGAAAGAACAC 61.664 63.158 24.41 0.00 35.47 3.32
474 475 1.595929 GGGCCGACGAAAGAACACA 60.596 57.895 0.00 0.00 0.00 3.72
475 476 1.568025 GGCCGACGAAAGAACACAC 59.432 57.895 0.00 0.00 0.00 3.82
476 477 1.568025 GCCGACGAAAGAACACACC 59.432 57.895 0.00 0.00 0.00 4.16
477 478 1.850640 CCGACGAAAGAACACACCG 59.149 57.895 0.00 0.00 0.00 4.94
478 479 0.595567 CCGACGAAAGAACACACCGA 60.596 55.000 0.00 0.00 0.00 4.69
479 480 0.501435 CGACGAAAGAACACACCGAC 59.499 55.000 0.00 0.00 0.00 4.79
480 481 0.501435 GACGAAAGAACACACCGACG 59.499 55.000 0.00 0.00 0.00 5.12
481 482 1.200839 CGAAAGAACACACCGACGC 59.799 57.895 0.00 0.00 0.00 5.19
482 483 1.200839 GAAAGAACACACCGACGCG 59.799 57.895 3.53 3.53 0.00 6.01
483 484 1.210545 GAAAGAACACACCGACGCGA 61.211 55.000 15.93 0.00 0.00 5.87
484 485 0.806884 AAAGAACACACCGACGCGAA 60.807 50.000 15.93 0.00 0.00 4.70
485 486 0.806884 AAGAACACACCGACGCGAAA 60.807 50.000 15.93 0.00 0.00 3.46
486 487 1.083847 GAACACACCGACGCGAAAC 60.084 57.895 15.93 2.51 0.00 2.78
487 488 1.754436 GAACACACCGACGCGAAACA 61.754 55.000 15.93 0.00 0.00 2.83
488 489 2.027628 AACACACCGACGCGAAACAC 62.028 55.000 15.93 0.00 0.00 3.32
489 490 2.202770 ACACCGACGCGAAACACA 60.203 55.556 15.93 0.00 0.00 3.72
490 491 2.244382 CACCGACGCGAAACACAC 59.756 61.111 15.93 0.00 0.00 3.82
491 492 2.202770 ACCGACGCGAAACACACA 60.203 55.556 15.93 0.00 0.00 3.72
492 493 2.244382 CCGACGCGAAACACACAC 59.756 61.111 15.93 0.00 0.00 3.82
493 494 2.128637 CGACGCGAAACACACACG 60.129 61.111 15.93 0.20 0.00 4.49
494 495 2.569794 CGACGCGAAACACACACGA 61.570 57.895 15.93 0.00 0.00 4.35
495 496 1.084478 GACGCGAAACACACACGAC 60.084 57.895 15.93 0.00 0.00 4.34
496 497 2.128637 CGCGAAACACACACGACG 60.129 61.111 0.00 0.00 0.00 5.12
497 498 2.423039 GCGAAACACACACGACGC 60.423 61.111 0.00 0.00 39.33 5.19
498 499 2.128637 CGAAACACACACGACGCG 60.129 61.111 3.53 3.53 0.00 6.01
499 500 2.244382 GAAACACACACGACGCGG 59.756 61.111 12.47 0.00 0.00 6.46
500 501 3.218209 GAAACACACACGACGCGGG 62.218 63.158 12.47 4.10 35.82 6.13
519 520 3.341043 CACAGCGAGCGCACAGTT 61.341 61.111 17.68 0.00 44.88 3.16
520 521 3.038417 ACAGCGAGCGCACAGTTC 61.038 61.111 17.68 0.00 44.88 3.01
521 522 2.736236 CAGCGAGCGCACAGTTCT 60.736 61.111 17.68 0.00 44.88 3.01
522 523 2.736236 AGCGAGCGCACAGTTCTG 60.736 61.111 17.68 0.00 44.88 3.02
523 524 4.436448 GCGAGCGCACAGTTCTGC 62.436 66.667 11.47 2.48 41.49 4.26
524 525 3.037833 CGAGCGCACAGTTCTGCA 61.038 61.111 11.47 0.00 36.94 4.41
525 526 2.553268 GAGCGCACAGTTCTGCAC 59.447 61.111 11.47 0.00 36.94 4.57
526 527 3.287121 GAGCGCACAGTTCTGCACG 62.287 63.158 11.47 9.60 36.94 5.34
527 528 3.337889 GCGCACAGTTCTGCACGA 61.338 61.111 0.30 0.00 36.94 4.35
528 529 2.881266 GCGCACAGTTCTGCACGAA 61.881 57.895 0.30 0.00 36.94 3.85
529 530 1.641140 CGCACAGTTCTGCACGAAA 59.359 52.632 8.65 0.00 36.94 3.46
530 531 0.027455 CGCACAGTTCTGCACGAAAA 59.973 50.000 8.65 0.00 36.94 2.29
531 532 1.334059 CGCACAGTTCTGCACGAAAAT 60.334 47.619 8.65 0.00 36.94 1.82
532 533 2.731217 GCACAGTTCTGCACGAAAATT 58.269 42.857 0.00 0.00 37.11 1.82
533 534 3.115554 GCACAGTTCTGCACGAAAATTT 58.884 40.909 0.00 0.00 37.11 1.82
534 535 3.180387 GCACAGTTCTGCACGAAAATTTC 59.820 43.478 0.00 0.00 37.11 2.17
535 536 4.350346 CACAGTTCTGCACGAAAATTTCA 58.650 39.130 6.53 0.00 32.41 2.69
536 537 4.438797 CACAGTTCTGCACGAAAATTTCAG 59.561 41.667 6.53 1.82 32.41 3.02
537 538 4.335315 ACAGTTCTGCACGAAAATTTCAGA 59.665 37.500 6.53 3.15 32.41 3.27
538 539 4.672413 CAGTTCTGCACGAAAATTTCAGAC 59.328 41.667 6.53 3.52 34.00 3.51
539 540 3.896648 TCTGCACGAAAATTTCAGACC 57.103 42.857 6.53 0.00 0.00 3.85
540 541 2.223144 TCTGCACGAAAATTTCAGACCG 59.777 45.455 6.53 0.00 0.00 4.79
541 542 1.944024 TGCACGAAAATTTCAGACCGT 59.056 42.857 6.53 0.00 0.00 4.83
542 543 2.286713 TGCACGAAAATTTCAGACCGTG 60.287 45.455 17.57 17.57 46.71 4.94
543 544 2.286772 GCACGAAAATTTCAGACCGTGT 60.287 45.455 20.28 0.00 46.01 4.49
544 545 3.059461 GCACGAAAATTTCAGACCGTGTA 60.059 43.478 20.28 0.00 46.01 2.90
545 546 4.698276 CACGAAAATTTCAGACCGTGTAG 58.302 43.478 6.53 0.00 41.38 2.74
546 547 7.795707 GCACGAAAATTTCAGACCGTGTAGG 62.796 48.000 20.28 6.43 46.01 3.18
547 548 3.424433 CGAAAATTTCAGACCGTGTAGGC 60.424 47.826 6.53 0.00 46.52 3.93
548 549 1.722011 AATTTCAGACCGTGTAGGCG 58.278 50.000 0.00 0.00 46.52 5.52
581 582 3.584052 CGGACCTAGGGCGACGAG 61.584 72.222 14.81 0.00 0.00 4.18
582 583 2.439883 GGACCTAGGGCGACGAGT 60.440 66.667 14.81 0.00 0.00 4.18
583 584 2.479750 GGACCTAGGGCGACGAGTC 61.480 68.421 14.81 0.00 0.00 3.36
628 629 1.694048 CCAGGTAGCTCCTCCCTCATT 60.694 57.143 0.00 0.00 46.24 2.57
647 648 4.593864 GTCTCATCCCGCGCCCTC 62.594 72.222 0.00 0.00 0.00 4.30
668 669 4.404098 CCCCCGACCTCCCGTTTG 62.404 72.222 0.00 0.00 0.00 2.93
681 684 3.479269 GTTTGTCCCGCGCTCTCG 61.479 66.667 5.56 0.00 39.07 4.04
748 751 4.803426 CTGAGCACGAGGGGACGC 62.803 72.222 0.00 0.00 36.70 5.19
796 799 2.019668 GCTAACTCCTCCTCTCGCTCA 61.020 57.143 0.00 0.00 0.00 4.26
880 883 4.840005 GAAGGAAGGGCGCCGAGG 62.840 72.222 22.54 0.00 0.00 4.63
1009 1012 0.180406 GACCGCCACCATGTAATCCT 59.820 55.000 0.00 0.00 0.00 3.24
1018 1022 1.349026 CCATGTAATCCTCGCATCCCT 59.651 52.381 0.00 0.00 0.00 4.20
1063 1067 2.847234 TGGCTGGTGTTCCTCGGT 60.847 61.111 0.00 0.00 34.23 4.69
1073 1077 0.816373 GTTCCTCGGTACTGACCCTC 59.184 60.000 0.00 0.00 43.64 4.30
1074 1078 0.406750 TTCCTCGGTACTGACCCTCA 59.593 55.000 0.00 0.00 43.64 3.86
1103 1108 3.612251 CCTCCTTGCAGGGCATTG 58.388 61.111 10.65 0.20 38.76 2.82
1187 1207 2.502080 CTCACCGACGCACTCGAC 60.502 66.667 2.39 0.00 46.14 4.20
1248 1268 0.175760 GCCTGAGTGGTATCTCGCAA 59.824 55.000 0.00 0.00 37.28 4.85
1270 1291 0.093705 CTCTCGCAGTTTACGCTTGC 59.906 55.000 0.00 0.00 0.00 4.01
1333 1364 9.863845 GTTTTTGTTTATTTATTAGGGCTAGCA 57.136 29.630 18.24 0.00 0.00 3.49
1334 1365 9.863845 TTTTTGTTTATTTATTAGGGCTAGCAC 57.136 29.630 18.24 14.32 0.00 4.40
1384 1415 1.597461 CGGGTTGAGGAGGAAGACC 59.403 63.158 0.00 0.00 0.00 3.85
1416 1453 5.091261 AGGAAGACAATACCAGTGATGAC 57.909 43.478 0.00 0.00 0.00 3.06
1422 1459 3.118629 ACAATACCAGTGATGACGATGCT 60.119 43.478 0.00 0.00 0.00 3.79
1423 1460 2.584492 TACCAGTGATGACGATGCTG 57.416 50.000 0.00 0.00 0.00 4.41
1440 1477 2.055689 CTGGGGCTCTTGTGACCACA 62.056 60.000 0.00 0.00 39.98 4.17
1502 1539 4.278419 AGAGTTTGGTACTGCAATTTGGTC 59.722 41.667 0.00 0.00 37.17 4.02
1571 1618 7.616935 AGTTTGTCAATATCACCTGAATTGGAT 59.383 33.333 0.00 0.00 32.63 3.41
1575 1622 7.781219 TGTCAATATCACCTGAATTGGATCATT 59.219 33.333 0.00 0.00 32.63 2.57
1581 1628 5.416639 TCACCTGAATTGGATCATTTGACAG 59.583 40.000 0.00 0.00 0.00 3.51
1585 1632 6.071784 CCTGAATTGGATCATTTGACAGTTCA 60.072 38.462 0.00 0.00 37.27 3.18
1618 1665 4.757149 CCTCAACGAAGAAGGAAGACATTT 59.243 41.667 0.00 0.00 0.00 2.32
1632 1679 5.406477 GGAAGACATTTGGAATTTTGAGTGC 59.594 40.000 0.00 0.00 0.00 4.40
1637 1686 0.968405 TGGAATTTTGAGTGCCAGCC 59.032 50.000 0.00 0.00 0.00 4.85
1638 1687 1.260544 GGAATTTTGAGTGCCAGCCT 58.739 50.000 0.00 0.00 0.00 4.58
1639 1688 2.224992 TGGAATTTTGAGTGCCAGCCTA 60.225 45.455 0.00 0.00 0.00 3.93
1640 1689 2.424956 GGAATTTTGAGTGCCAGCCTAG 59.575 50.000 0.00 0.00 0.00 3.02
1696 1747 4.162040 AGGGACAATCTGCAAAGGATAG 57.838 45.455 0.00 0.00 0.00 2.08
1811 1876 0.673644 AAGGCTCCGTTTGACATCGG 60.674 55.000 11.72 11.72 46.93 4.18
1828 1893 1.423541 TCGGGGTGGATTGGATTATGG 59.576 52.381 0.00 0.00 0.00 2.74
1840 1911 1.336609 GGATTATGGTACCCTCGTCGC 60.337 57.143 10.07 0.00 0.00 5.19
1841 1912 1.338973 GATTATGGTACCCTCGTCGCA 59.661 52.381 10.07 0.00 0.00 5.10
1869 1940 5.351458 ACTGCTTTTGGAAATTGAGTGTTC 58.649 37.500 0.00 0.00 0.00 3.18
1954 2025 4.081807 TGTGAGAGGACAATCATCAGTCAG 60.082 45.833 0.00 0.00 36.50 3.51
1963 2080 3.657398 ATCATCAGTCAGCCCATTTCA 57.343 42.857 0.00 0.00 0.00 2.69
1965 2082 3.972133 TCATCAGTCAGCCCATTTCATT 58.028 40.909 0.00 0.00 0.00 2.57
2218 2371 7.972277 GCATCATCTGAAAATTCAAGTGTGTAT 59.028 33.333 0.00 0.00 36.64 2.29
2364 2529 9.442047 ACTATTAGACTATTAGTTATACCGCGT 57.558 33.333 4.92 0.00 0.00 6.01
2482 2670 6.314120 ACAGTCTCAATATCTAGATGGAGCT 58.686 40.000 15.79 14.96 0.00 4.09
2483 2671 6.782000 ACAGTCTCAATATCTAGATGGAGCTT 59.218 38.462 15.79 7.88 0.00 3.74
2484 2672 7.947332 ACAGTCTCAATATCTAGATGGAGCTTA 59.053 37.037 15.79 2.07 0.00 3.09
2485 2673 8.243426 CAGTCTCAATATCTAGATGGAGCTTAC 58.757 40.741 15.79 12.15 0.00 2.34
2486 2674 8.170061 AGTCTCAATATCTAGATGGAGCTTACT 58.830 37.037 15.79 13.78 0.00 2.24
2487 2675 8.243426 GTCTCAATATCTAGATGGAGCTTACTG 58.757 40.741 15.79 0.00 0.00 2.74
2488 2676 7.395772 TCTCAATATCTAGATGGAGCTTACTGG 59.604 40.741 15.79 0.00 0.00 4.00
2489 2677 7.013220 TCAATATCTAGATGGAGCTTACTGGT 58.987 38.462 15.79 0.00 0.00 4.00
2490 2678 7.510685 TCAATATCTAGATGGAGCTTACTGGTT 59.489 37.037 15.79 0.00 0.00 3.67
2491 2679 5.543507 ATCTAGATGGAGCTTACTGGTTG 57.456 43.478 3.89 0.00 0.00 3.77
2492 2680 4.610333 TCTAGATGGAGCTTACTGGTTGA 58.390 43.478 0.00 0.00 0.00 3.18
2493 2681 5.211973 TCTAGATGGAGCTTACTGGTTGAT 58.788 41.667 0.00 0.00 0.00 2.57
2494 2682 4.851639 AGATGGAGCTTACTGGTTGATT 57.148 40.909 0.00 0.00 0.00 2.57
2495 2683 5.184892 AGATGGAGCTTACTGGTTGATTT 57.815 39.130 0.00 0.00 0.00 2.17
2496 2684 5.574188 AGATGGAGCTTACTGGTTGATTTT 58.426 37.500 0.00 0.00 0.00 1.82
2497 2685 6.721318 AGATGGAGCTTACTGGTTGATTTTA 58.279 36.000 0.00 0.00 0.00 1.52
2498 2686 7.349598 AGATGGAGCTTACTGGTTGATTTTAT 58.650 34.615 0.00 0.00 0.00 1.40
2499 2687 6.757897 TGGAGCTTACTGGTTGATTTTATG 57.242 37.500 0.00 0.00 0.00 1.90
2500 2688 5.125417 TGGAGCTTACTGGTTGATTTTATGC 59.875 40.000 0.00 0.00 0.00 3.14
2541 2730 7.423844 ACTGATATTGATAGAACACACCTCA 57.576 36.000 0.00 0.00 0.00 3.86
2561 2750 9.480053 CACCTCAAGATTTTGAACATAATTTGT 57.520 29.630 0.00 0.00 42.48 2.83
2745 3015 9.482627 GGACTCATTTATTCTCCATACACTTAG 57.517 37.037 0.00 0.00 0.00 2.18
2755 3025 2.030457 CCATACACTTAGCGGCTTTTCG 59.970 50.000 8.26 0.00 0.00 3.46
2765 3035 2.292292 AGCGGCTTTTCGTTTGTGTATT 59.708 40.909 0.00 0.00 0.00 1.89
2766 3036 3.047093 GCGGCTTTTCGTTTGTGTATTT 58.953 40.909 0.00 0.00 0.00 1.40
2767 3037 3.487942 GCGGCTTTTCGTTTGTGTATTTT 59.512 39.130 0.00 0.00 0.00 1.82
2768 3038 4.026393 GCGGCTTTTCGTTTGTGTATTTTT 60.026 37.500 0.00 0.00 0.00 1.94
2811 3082 3.287867 AGCTGATTTGTGGAGTATGGG 57.712 47.619 0.00 0.00 0.00 4.00
2814 3085 3.378427 GCTGATTTGTGGAGTATGGGTTC 59.622 47.826 0.00 0.00 0.00 3.62
3011 3297 2.341176 GGCTTGCTTTGGCCACAG 59.659 61.111 14.90 14.90 46.84 3.66
3083 3369 9.676861 TCTTCACTCATAATGTTTGATCTTCAT 57.323 29.630 0.00 0.00 0.00 2.57
3242 3528 9.653287 CAGTTCCAGAGAAAAATGTATGTACTA 57.347 33.333 0.00 0.00 32.58 1.82
3286 3579 9.798885 GCTTCTAAAACTATACTGCGATATTTG 57.201 33.333 0.00 0.00 0.00 2.32
3357 3650 7.179269 ACAAAGAGAGTTCTCATACTAGTCCT 58.821 38.462 11.44 0.00 45.21 3.85
3359 3652 9.349713 CAAAGAGAGTTCTCATACTAGTCCTAT 57.650 37.037 11.44 0.00 45.21 2.57
3410 3703 2.992476 AGACATACCCGTGGCTCTT 58.008 52.632 0.00 0.00 29.21 2.85
3446 3741 0.961019 CTGGGGTGAATGGTTGTGTG 59.039 55.000 0.00 0.00 0.00 3.82
3447 3742 0.260230 TGGGGTGAATGGTTGTGTGT 59.740 50.000 0.00 0.00 0.00 3.72
3483 3781 2.162681 GGCAACCTCTTATGCACAACT 58.837 47.619 0.00 0.00 44.32 3.16
3484 3782 3.244735 TGGCAACCTCTTATGCACAACTA 60.245 43.478 0.00 0.00 44.32 2.24
3486 3784 4.003648 GCAACCTCTTATGCACAACTACT 58.996 43.478 0.00 0.00 42.12 2.57
3532 4326 6.450545 GTTAGATTGATCGGATGACTGATGA 58.549 40.000 0.00 0.00 41.58 2.92
3577 4371 7.396418 ACTCTATTAGTCTAATACTCCCTCCG 58.604 42.308 8.05 0.00 39.80 4.63
3596 4390 0.643820 GTCCGGAATTACTTGTCGCG 59.356 55.000 5.23 0.00 0.00 5.87
3606 4400 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
3668 4462 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
3674 4468 2.811431 CTGCGACAAGTAATTTGGGACA 59.189 45.455 0.00 0.00 41.25 4.02
3832 4626 5.622346 TGTAATGGGTTTGCCTTTTCTTT 57.378 34.783 0.00 0.00 34.45 2.52
3870 4664 6.750501 GCTGTGGCATGCATATAATTTATCAG 59.249 38.462 21.36 9.35 38.54 2.90
3942 4738 7.429633 TGAAAACAATATTTGGTCGTGTGATT 58.570 30.769 0.00 0.00 34.12 2.57
4057 4932 5.307716 TCTCCTTCAAAATTCCATTTGCCTT 59.692 36.000 0.00 0.00 39.57 4.35
4068 4943 6.723298 TTCCATTTGCCTTCTTGTTTTAGA 57.277 33.333 0.00 0.00 0.00 2.10
4073 4948 7.809806 CCATTTGCCTTCTTGTTTTAGAAGTAG 59.190 37.037 11.25 0.68 46.27 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.750148 ACGGTCTTCTATTTATGAAGGCTAG 58.250 40.000 7.80 5.66 43.38 3.42
2 3 6.322969 TGACGGTCTTCTATTTATGAAGGCTA 59.677 38.462 9.88 0.00 43.38 3.93
3 4 5.128827 TGACGGTCTTCTATTTATGAAGGCT 59.871 40.000 9.88 0.00 43.38 4.58
5 6 7.210174 TGATGACGGTCTTCTATTTATGAAGG 58.790 38.462 20.48 0.00 40.73 3.46
7 8 6.701841 GCTGATGACGGTCTTCTATTTATGAA 59.298 38.462 20.48 1.65 0.00 2.57
8 9 6.183360 TGCTGATGACGGTCTTCTATTTATGA 60.183 38.462 20.48 2.23 0.00 2.15
10 11 6.161855 TGCTGATGACGGTCTTCTATTTAT 57.838 37.500 20.48 0.13 0.00 1.40
11 12 5.592104 TGCTGATGACGGTCTTCTATTTA 57.408 39.130 20.48 3.97 0.00 1.40
12 13 4.471904 TGCTGATGACGGTCTTCTATTT 57.528 40.909 20.48 0.00 0.00 1.40
13 14 4.471904 TTGCTGATGACGGTCTTCTATT 57.528 40.909 20.48 0.00 0.00 1.73
14 15 4.471904 TTTGCTGATGACGGTCTTCTAT 57.528 40.909 20.48 2.48 0.00 1.98
15 16 3.953712 TTTGCTGATGACGGTCTTCTA 57.046 42.857 20.48 9.54 0.00 2.10
16 17 2.839486 TTTGCTGATGACGGTCTTCT 57.161 45.000 20.48 2.55 0.00 2.85
17 18 3.814945 CTTTTTGCTGATGACGGTCTTC 58.185 45.455 15.05 15.05 0.00 2.87
18 19 2.030805 GCTTTTTGCTGATGACGGTCTT 60.031 45.455 9.88 2.62 38.95 3.01
19 20 1.537202 GCTTTTTGCTGATGACGGTCT 59.463 47.619 9.88 0.00 38.95 3.85
20 21 1.266718 TGCTTTTTGCTGATGACGGTC 59.733 47.619 0.00 0.00 43.37 4.79
21 22 1.317613 TGCTTTTTGCTGATGACGGT 58.682 45.000 0.00 0.00 43.37 4.83
22 23 2.420628 TTGCTTTTTGCTGATGACGG 57.579 45.000 0.00 0.00 43.37 4.79
23 24 3.122278 CCATTTGCTTTTTGCTGATGACG 59.878 43.478 0.00 0.00 43.37 4.35
24 25 3.120442 GCCATTTGCTTTTTGCTGATGAC 60.120 43.478 0.00 0.00 43.37 3.06
25 26 3.068560 GCCATTTGCTTTTTGCTGATGA 58.931 40.909 0.00 0.00 43.37 2.92
26 27 3.465122 GCCATTTGCTTTTTGCTGATG 57.535 42.857 0.00 0.00 43.37 3.07
46 47 5.499139 TTGTGAAGAAGGTTGCTTGTTAG 57.501 39.130 0.00 0.00 0.00 2.34
47 48 6.463995 AATTGTGAAGAAGGTTGCTTGTTA 57.536 33.333 0.00 0.00 0.00 2.41
48 49 5.343307 AATTGTGAAGAAGGTTGCTTGTT 57.657 34.783 0.00 0.00 0.00 2.83
49 50 6.463995 TTAATTGTGAAGAAGGTTGCTTGT 57.536 33.333 0.00 0.00 0.00 3.16
50 51 7.869429 AGATTTAATTGTGAAGAAGGTTGCTTG 59.131 33.333 0.00 0.00 0.00 4.01
51 52 7.955918 AGATTTAATTGTGAAGAAGGTTGCTT 58.044 30.769 0.00 0.00 0.00 3.91
52 53 7.530426 AGATTTAATTGTGAAGAAGGTTGCT 57.470 32.000 0.00 0.00 0.00 3.91
53 54 8.593492 AAAGATTTAATTGTGAAGAAGGTTGC 57.407 30.769 0.00 0.00 0.00 4.17
54 55 9.196552 GGAAAGATTTAATTGTGAAGAAGGTTG 57.803 33.333 0.00 0.00 0.00 3.77
55 56 9.147732 AGGAAAGATTTAATTGTGAAGAAGGTT 57.852 29.630 0.00 0.00 0.00 3.50
56 57 8.712228 AGGAAAGATTTAATTGTGAAGAAGGT 57.288 30.769 0.00 0.00 0.00 3.50
87 88 6.075762 TGTCATCATTGTTGACCTTGAAAG 57.924 37.500 19.99 0.00 42.25 2.62
88 89 6.462552 TTGTCATCATTGTTGACCTTGAAA 57.537 33.333 19.99 8.63 42.25 2.69
89 90 6.294675 GGATTGTCATCATTGTTGACCTTGAA 60.295 38.462 19.99 11.15 42.25 2.69
90 91 5.183713 GGATTGTCATCATTGTTGACCTTGA 59.816 40.000 19.99 8.31 42.25 3.02
91 92 5.184479 AGGATTGTCATCATTGTTGACCTTG 59.816 40.000 19.99 0.00 42.25 3.61
92 93 5.327732 AGGATTGTCATCATTGTTGACCTT 58.672 37.500 19.99 10.71 42.25 3.50
93 94 4.927049 AGGATTGTCATCATTGTTGACCT 58.073 39.130 19.99 10.57 42.25 3.85
94 95 5.416952 AGAAGGATTGTCATCATTGTTGACC 59.583 40.000 19.99 8.87 42.25 4.02
95 96 6.320171 CAGAAGGATTGTCATCATTGTTGAC 58.680 40.000 17.27 17.27 43.04 3.18
96 97 5.106038 GCAGAAGGATTGTCATCATTGTTGA 60.106 40.000 0.00 0.00 33.50 3.18
97 98 5.100259 GCAGAAGGATTGTCATCATTGTTG 58.900 41.667 0.00 0.00 33.50 3.33
98 99 5.014858 AGCAGAAGGATTGTCATCATTGTT 58.985 37.500 0.00 0.00 33.50 2.83
99 100 4.398358 CAGCAGAAGGATTGTCATCATTGT 59.602 41.667 0.00 0.00 33.50 2.71
100 101 4.733815 GCAGCAGAAGGATTGTCATCATTG 60.734 45.833 0.00 0.00 33.50 2.82
101 102 3.380637 GCAGCAGAAGGATTGTCATCATT 59.619 43.478 0.00 0.00 36.10 2.57
102 103 2.950309 GCAGCAGAAGGATTGTCATCAT 59.050 45.455 0.00 0.00 0.00 2.45
103 104 2.290450 TGCAGCAGAAGGATTGTCATCA 60.290 45.455 0.00 0.00 0.00 3.07
104 105 2.362736 TGCAGCAGAAGGATTGTCATC 58.637 47.619 0.00 0.00 0.00 2.92
105 106 2.502142 TGCAGCAGAAGGATTGTCAT 57.498 45.000 0.00 0.00 0.00 3.06
106 107 2.156917 CTTGCAGCAGAAGGATTGTCA 58.843 47.619 0.00 0.00 0.00 3.58
107 108 2.157738 ACTTGCAGCAGAAGGATTGTC 58.842 47.619 0.00 0.00 0.00 3.18
108 109 2.283145 ACTTGCAGCAGAAGGATTGT 57.717 45.000 0.00 0.00 0.00 2.71
109 110 4.771590 TTTACTTGCAGCAGAAGGATTG 57.228 40.909 0.00 0.00 0.00 2.67
110 111 5.789643 TTTTTACTTGCAGCAGAAGGATT 57.210 34.783 0.00 0.00 0.00 3.01
111 112 5.990120 ATTTTTACTTGCAGCAGAAGGAT 57.010 34.783 0.00 0.00 0.00 3.24
112 113 6.237901 TCTATTTTTACTTGCAGCAGAAGGA 58.762 36.000 0.00 0.00 0.00 3.36
113 114 6.500684 TCTATTTTTACTTGCAGCAGAAGG 57.499 37.500 0.00 0.00 0.00 3.46
114 115 9.661187 CATATCTATTTTTACTTGCAGCAGAAG 57.339 33.333 0.00 0.00 0.00 2.85
115 116 8.623903 CCATATCTATTTTTACTTGCAGCAGAA 58.376 33.333 0.00 0.00 0.00 3.02
116 117 7.255242 GCCATATCTATTTTTACTTGCAGCAGA 60.255 37.037 0.00 0.00 0.00 4.26
117 118 6.860023 GCCATATCTATTTTTACTTGCAGCAG 59.140 38.462 0.00 0.00 0.00 4.24
118 119 6.513230 CGCCATATCTATTTTTACTTGCAGCA 60.513 38.462 0.00 0.00 0.00 4.41
119 120 5.853282 CGCCATATCTATTTTTACTTGCAGC 59.147 40.000 0.00 0.00 0.00 5.25
120 121 7.171508 TCTCGCCATATCTATTTTTACTTGCAG 59.828 37.037 0.00 0.00 0.00 4.41
121 122 6.989759 TCTCGCCATATCTATTTTTACTTGCA 59.010 34.615 0.00 0.00 0.00 4.08
122 123 7.421530 TCTCGCCATATCTATTTTTACTTGC 57.578 36.000 0.00 0.00 0.00 4.01
123 124 9.208022 TCATCTCGCCATATCTATTTTTACTTG 57.792 33.333 0.00 0.00 0.00 3.16
124 125 9.429359 CTCATCTCGCCATATCTATTTTTACTT 57.571 33.333 0.00 0.00 0.00 2.24
125 126 8.807118 TCTCATCTCGCCATATCTATTTTTACT 58.193 33.333 0.00 0.00 0.00 2.24
126 127 8.988064 TCTCATCTCGCCATATCTATTTTTAC 57.012 34.615 0.00 0.00 0.00 2.01
127 128 9.809096 GATCTCATCTCGCCATATCTATTTTTA 57.191 33.333 0.00 0.00 0.00 1.52
128 129 8.538701 AGATCTCATCTCGCCATATCTATTTTT 58.461 33.333 0.00 0.00 33.42 1.94
129 130 8.076910 AGATCTCATCTCGCCATATCTATTTT 57.923 34.615 0.00 0.00 33.42 1.82
130 131 7.658525 AGATCTCATCTCGCCATATCTATTT 57.341 36.000 0.00 0.00 33.42 1.40
131 132 7.275888 GAGATCTCATCTCGCCATATCTATT 57.724 40.000 18.11 0.00 45.50 1.73
132 133 6.882610 GAGATCTCATCTCGCCATATCTAT 57.117 41.667 18.11 0.00 45.50 1.98
144 145 3.304911 TTCGTCAGGGAGATCTCATCT 57.695 47.619 23.85 16.76 43.70 2.90
145 146 4.555262 GAATTCGTCAGGGAGATCTCATC 58.445 47.826 23.85 14.86 0.00 2.92
146 147 3.323403 GGAATTCGTCAGGGAGATCTCAT 59.677 47.826 23.85 9.35 0.00 2.90
147 148 2.695666 GGAATTCGTCAGGGAGATCTCA 59.304 50.000 23.85 0.36 0.00 3.27
148 149 2.695666 TGGAATTCGTCAGGGAGATCTC 59.304 50.000 14.75 14.75 0.00 2.75
149 150 2.432510 GTGGAATTCGTCAGGGAGATCT 59.567 50.000 0.00 0.00 0.00 2.75
150 151 2.799917 CGTGGAATTCGTCAGGGAGATC 60.800 54.545 0.00 0.00 0.00 2.75
151 152 1.137086 CGTGGAATTCGTCAGGGAGAT 59.863 52.381 0.00 0.00 0.00 2.75
152 153 0.530744 CGTGGAATTCGTCAGGGAGA 59.469 55.000 0.00 0.00 0.00 3.71
153 154 0.460284 CCGTGGAATTCGTCAGGGAG 60.460 60.000 14.69 0.00 40.27 4.30
154 155 1.594833 CCGTGGAATTCGTCAGGGA 59.405 57.895 14.69 0.00 40.27 4.20
155 156 1.449601 CCCGTGGAATTCGTCAGGG 60.450 63.158 13.48 13.48 38.31 4.45
156 157 2.106683 GCCCGTGGAATTCGTCAGG 61.107 63.158 0.00 0.00 0.00 3.86
157 158 2.106683 GGCCCGTGGAATTCGTCAG 61.107 63.158 0.00 0.00 0.00 3.51
158 159 2.046700 GGCCCGTGGAATTCGTCA 60.047 61.111 0.00 0.00 0.00 4.35
159 160 3.192922 CGGCCCGTGGAATTCGTC 61.193 66.667 0.00 0.00 0.00 4.20
160 161 4.770874 CCGGCCCGTGGAATTCGT 62.771 66.667 0.85 0.00 0.00 3.85
161 162 3.750373 ATCCGGCCCGTGGAATTCG 62.750 63.158 0.85 0.00 39.39 3.34
162 163 0.179040 TAATCCGGCCCGTGGAATTC 60.179 55.000 0.85 0.00 39.39 2.17
163 164 0.256464 TTAATCCGGCCCGTGGAATT 59.744 50.000 0.85 0.00 39.39 2.17
164 165 0.256464 TTTAATCCGGCCCGTGGAAT 59.744 50.000 0.85 0.00 39.39 3.01
165 166 0.037877 TTTTAATCCGGCCCGTGGAA 59.962 50.000 0.85 0.00 39.39 3.53
166 167 0.256464 ATTTTAATCCGGCCCGTGGA 59.744 50.000 0.85 0.00 40.46 4.02
167 168 0.666374 GATTTTAATCCGGCCCGTGG 59.334 55.000 0.85 0.00 0.00 4.94
168 169 0.666374 GGATTTTAATCCGGCCCGTG 59.334 55.000 0.85 0.00 44.96 4.94
169 170 3.105187 GGATTTTAATCCGGCCCGT 57.895 52.632 0.85 0.00 44.96 5.28
177 178 6.018669 CGGTGACTAGCTTGAGGATTTTAATC 60.019 42.308 1.04 0.00 34.66 1.75
178 179 5.817816 CGGTGACTAGCTTGAGGATTTTAAT 59.182 40.000 1.04 0.00 0.00 1.40
179 180 5.175859 CGGTGACTAGCTTGAGGATTTTAA 58.824 41.667 1.04 0.00 0.00 1.52
180 181 4.222145 ACGGTGACTAGCTTGAGGATTTTA 59.778 41.667 1.04 0.00 0.00 1.52
181 182 3.008049 ACGGTGACTAGCTTGAGGATTTT 59.992 43.478 1.04 0.00 0.00 1.82
182 183 2.567615 ACGGTGACTAGCTTGAGGATTT 59.432 45.455 1.04 0.00 0.00 2.17
183 184 2.180276 ACGGTGACTAGCTTGAGGATT 58.820 47.619 1.04 0.00 0.00 3.01
184 185 1.853963 ACGGTGACTAGCTTGAGGAT 58.146 50.000 1.04 0.00 0.00 3.24
185 186 1.629043 AACGGTGACTAGCTTGAGGA 58.371 50.000 1.04 0.00 0.00 3.71
186 187 3.587797 TTAACGGTGACTAGCTTGAGG 57.412 47.619 1.04 0.00 0.00 3.86
187 188 5.694910 TCTTTTTAACGGTGACTAGCTTGAG 59.305 40.000 1.04 0.00 0.00 3.02
188 189 5.603596 TCTTTTTAACGGTGACTAGCTTGA 58.396 37.500 1.04 0.00 0.00 3.02
189 190 5.917541 TCTTTTTAACGGTGACTAGCTTG 57.082 39.130 0.00 0.00 0.00 4.01
190 191 6.053650 AGTTCTTTTTAACGGTGACTAGCTT 58.946 36.000 0.00 0.00 34.46 3.74
191 192 5.608449 AGTTCTTTTTAACGGTGACTAGCT 58.392 37.500 0.00 0.00 34.46 3.32
192 193 5.919272 AGTTCTTTTTAACGGTGACTAGC 57.081 39.130 0.00 0.00 34.46 3.42
195 196 9.511144 CAAAAATAGTTCTTTTTAACGGTGACT 57.489 29.630 0.00 0.00 36.45 3.41
196 197 9.505995 TCAAAAATAGTTCTTTTTAACGGTGAC 57.494 29.630 0.00 0.00 36.45 3.67
197 198 9.724839 CTCAAAAATAGTTCTTTTTAACGGTGA 57.275 29.630 0.00 0.00 36.45 4.02
198 199 9.724839 TCTCAAAAATAGTTCTTTTTAACGGTG 57.275 29.630 0.00 0.00 36.45 4.94
199 200 9.726232 GTCTCAAAAATAGTTCTTTTTAACGGT 57.274 29.630 0.00 0.00 36.45 4.83
200 201 9.724839 TGTCTCAAAAATAGTTCTTTTTAACGG 57.275 29.630 0.00 0.00 36.45 4.44
236 237 9.793259 TGGTATATGTCTCAAAAAGAAAGTTCT 57.207 29.630 0.00 0.00 39.74 3.01
291 292 8.490311 ACTGTTTCATTTTCATCCCCTTAAAAA 58.510 29.630 0.00 0.00 0.00 1.94
292 293 8.028652 ACTGTTTCATTTTCATCCCCTTAAAA 57.971 30.769 0.00 0.00 0.00 1.52
293 294 7.610580 ACTGTTTCATTTTCATCCCCTTAAA 57.389 32.000 0.00 0.00 0.00 1.52
294 295 7.523052 CGAACTGTTTCATTTTCATCCCCTTAA 60.523 37.037 0.00 0.00 0.00 1.85
295 296 6.072175 CGAACTGTTTCATTTTCATCCCCTTA 60.072 38.462 0.00 0.00 0.00 2.69
296 297 5.278957 CGAACTGTTTCATTTTCATCCCCTT 60.279 40.000 0.00 0.00 0.00 3.95
297 298 4.218417 CGAACTGTTTCATTTTCATCCCCT 59.782 41.667 0.00 0.00 0.00 4.79
298 299 4.022329 ACGAACTGTTTCATTTTCATCCCC 60.022 41.667 0.00 0.00 0.00 4.81
299 300 5.121221 ACGAACTGTTTCATTTTCATCCC 57.879 39.130 0.00 0.00 0.00 3.85
300 301 6.664515 TGTACGAACTGTTTCATTTTCATCC 58.335 36.000 0.00 0.00 0.00 3.51
301 302 8.728088 AATGTACGAACTGTTTCATTTTCATC 57.272 30.769 0.00 0.00 33.35 2.92
302 303 9.528018 AAAATGTACGAACTGTTTCATTTTCAT 57.472 25.926 20.20 9.00 42.80 2.57
303 304 8.918961 AAAATGTACGAACTGTTTCATTTTCA 57.081 26.923 20.20 7.73 42.80 2.69
342 343 8.935844 GTGATGAAGTATGTATGAACTGTTTCA 58.064 33.333 0.00 0.00 45.93 2.69
343 344 8.391106 GGTGATGAAGTATGTATGAACTGTTTC 58.609 37.037 0.00 0.00 0.00 2.78
344 345 7.064609 CGGTGATGAAGTATGTATGAACTGTTT 59.935 37.037 0.00 0.00 0.00 2.83
345 346 6.535150 CGGTGATGAAGTATGTATGAACTGTT 59.465 38.462 0.00 0.00 0.00 3.16
346 347 6.042777 CGGTGATGAAGTATGTATGAACTGT 58.957 40.000 0.00 0.00 0.00 3.55
347 348 6.273071 TCGGTGATGAAGTATGTATGAACTG 58.727 40.000 0.00 0.00 0.00 3.16
348 349 6.465439 TCGGTGATGAAGTATGTATGAACT 57.535 37.500 0.00 0.00 0.00 3.01
349 350 6.923508 TCATCGGTGATGAAGTATGTATGAAC 59.076 38.462 7.01 0.00 44.70 3.18
350 351 7.049799 TCATCGGTGATGAAGTATGTATGAA 57.950 36.000 7.01 0.00 44.70 2.57
351 352 6.648879 TCATCGGTGATGAAGTATGTATGA 57.351 37.500 7.01 0.00 44.70 2.15
362 363 4.142708 CGTTTTGGATTTCATCGGTGATGA 60.143 41.667 0.00 5.42 45.78 2.92
363 364 4.097714 CGTTTTGGATTTCATCGGTGATG 58.902 43.478 0.00 0.32 41.00 3.07
364 365 3.427503 GCGTTTTGGATTTCATCGGTGAT 60.428 43.478 0.00 0.00 33.56 3.06
365 366 2.095466 GCGTTTTGGATTTCATCGGTGA 60.095 45.455 0.00 0.00 0.00 4.02
366 367 2.250188 GCGTTTTGGATTTCATCGGTG 58.750 47.619 0.00 0.00 0.00 4.94
367 368 1.883275 TGCGTTTTGGATTTCATCGGT 59.117 42.857 0.00 0.00 0.00 4.69
368 369 2.518949 CTGCGTTTTGGATTTCATCGG 58.481 47.619 0.00 0.00 0.00 4.18
369 370 1.913403 GCTGCGTTTTGGATTTCATCG 59.087 47.619 0.00 0.00 0.00 3.84
370 371 2.262211 GGCTGCGTTTTGGATTTCATC 58.738 47.619 0.00 0.00 0.00 2.92
371 372 1.066929 GGGCTGCGTTTTGGATTTCAT 60.067 47.619 0.00 0.00 0.00 2.57
372 373 0.316841 GGGCTGCGTTTTGGATTTCA 59.683 50.000 0.00 0.00 0.00 2.69
373 374 0.732538 CGGGCTGCGTTTTGGATTTC 60.733 55.000 0.00 0.00 0.00 2.17
374 375 1.288752 CGGGCTGCGTTTTGGATTT 59.711 52.632 0.00 0.00 0.00 2.17
375 376 2.961768 CGGGCTGCGTTTTGGATT 59.038 55.556 0.00 0.00 0.00 3.01
376 377 3.747976 GCGGGCTGCGTTTTGGAT 61.748 61.111 0.81 0.00 0.00 3.41
385 386 2.709883 TTTTGGCTATGCGGGCTGC 61.710 57.895 12.43 12.43 46.70 5.25
386 387 1.139520 GTTTTGGCTATGCGGGCTG 59.860 57.895 0.00 0.00 0.00 4.85
387 388 1.304052 TGTTTTGGCTATGCGGGCT 60.304 52.632 0.00 0.00 0.00 5.19
388 389 1.139520 CTGTTTTGGCTATGCGGGC 59.860 57.895 0.00 0.00 0.00 6.13
389 390 0.734889 CTCTGTTTTGGCTATGCGGG 59.265 55.000 0.00 0.00 0.00 6.13
390 391 0.734889 CCTCTGTTTTGGCTATGCGG 59.265 55.000 0.00 0.00 0.00 5.69
391 392 0.099436 GCCTCTGTTTTGGCTATGCG 59.901 55.000 0.00 0.00 45.26 4.73
398 399 7.069331 TGTTTATTATATGGGCCTCTGTTTTGG 59.931 37.037 4.53 0.00 0.00 3.28
399 400 8.006298 TGTTTATTATATGGGCCTCTGTTTTG 57.994 34.615 4.53 0.00 0.00 2.44
400 401 7.287696 CCTGTTTATTATATGGGCCTCTGTTTT 59.712 37.037 4.53 0.00 0.00 2.43
401 402 6.777580 CCTGTTTATTATATGGGCCTCTGTTT 59.222 38.462 4.53 0.00 0.00 2.83
402 403 6.102615 TCCTGTTTATTATATGGGCCTCTGTT 59.897 38.462 4.53 0.00 0.00 3.16
403 404 5.610982 TCCTGTTTATTATATGGGCCTCTGT 59.389 40.000 4.53 0.00 0.00 3.41
404 405 5.940470 GTCCTGTTTATTATATGGGCCTCTG 59.060 44.000 4.53 0.00 0.00 3.35
405 406 5.610982 TGTCCTGTTTATTATATGGGCCTCT 59.389 40.000 4.53 0.00 0.00 3.69
406 407 5.876357 TGTCCTGTTTATTATATGGGCCTC 58.124 41.667 4.53 0.00 0.00 4.70
407 408 5.922960 TGTCCTGTTTATTATATGGGCCT 57.077 39.130 4.53 0.00 0.00 5.19
408 409 6.322712 TGTTTGTCCTGTTTATTATATGGGCC 59.677 38.462 0.00 0.00 0.00 5.80
409 410 7.147983 TGTGTTTGTCCTGTTTATTATATGGGC 60.148 37.037 0.00 0.00 0.00 5.36
410 411 8.188139 GTGTGTTTGTCCTGTTTATTATATGGG 58.812 37.037 0.00 0.00 0.00 4.00
411 412 8.188139 GGTGTGTTTGTCCTGTTTATTATATGG 58.812 37.037 0.00 0.00 0.00 2.74
412 413 8.735315 TGGTGTGTTTGTCCTGTTTATTATATG 58.265 33.333 0.00 0.00 0.00 1.78
413 414 8.736244 GTGGTGTGTTTGTCCTGTTTATTATAT 58.264 33.333 0.00 0.00 0.00 0.86
414 415 7.720074 TGTGGTGTGTTTGTCCTGTTTATTATA 59.280 33.333 0.00 0.00 0.00 0.98
415 416 6.547880 TGTGGTGTGTTTGTCCTGTTTATTAT 59.452 34.615 0.00 0.00 0.00 1.28
416 417 5.886474 TGTGGTGTGTTTGTCCTGTTTATTA 59.114 36.000 0.00 0.00 0.00 0.98
417 418 4.707448 TGTGGTGTGTTTGTCCTGTTTATT 59.293 37.500 0.00 0.00 0.00 1.40
418 419 4.274147 TGTGGTGTGTTTGTCCTGTTTAT 58.726 39.130 0.00 0.00 0.00 1.40
419 420 3.687125 TGTGGTGTGTTTGTCCTGTTTA 58.313 40.909 0.00 0.00 0.00 2.01
420 421 2.520069 TGTGGTGTGTTTGTCCTGTTT 58.480 42.857 0.00 0.00 0.00 2.83
421 422 2.208132 TGTGGTGTGTTTGTCCTGTT 57.792 45.000 0.00 0.00 0.00 3.16
422 423 2.091541 CTTGTGGTGTGTTTGTCCTGT 58.908 47.619 0.00 0.00 0.00 4.00
423 424 1.202290 GCTTGTGGTGTGTTTGTCCTG 60.202 52.381 0.00 0.00 0.00 3.86
424 425 1.102978 GCTTGTGGTGTGTTTGTCCT 58.897 50.000 0.00 0.00 0.00 3.85
425 426 0.102300 GGCTTGTGGTGTGTTTGTCC 59.898 55.000 0.00 0.00 0.00 4.02
426 427 0.248458 CGGCTTGTGGTGTGTTTGTC 60.248 55.000 0.00 0.00 0.00 3.18
427 428 1.662438 CCGGCTTGTGGTGTGTTTGT 61.662 55.000 0.00 0.00 0.00 2.83
428 429 1.065600 CCGGCTTGTGGTGTGTTTG 59.934 57.895 0.00 0.00 0.00 2.93
429 430 1.077357 TCCGGCTTGTGGTGTGTTT 60.077 52.632 0.00 0.00 0.00 2.83
430 431 1.822186 GTCCGGCTTGTGGTGTGTT 60.822 57.895 0.00 0.00 0.00 3.32
431 432 2.203153 GTCCGGCTTGTGGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
432 433 3.345808 CGTCCGGCTTGTGGTGTG 61.346 66.667 0.00 0.00 0.00 3.82
437 438 3.342627 TTTCGCGTCCGGCTTGTG 61.343 61.111 5.77 0.00 40.44 3.33
438 439 3.343421 GTTTCGCGTCCGGCTTGT 61.343 61.111 5.77 0.00 40.44 3.16
439 440 4.424430 CGTTTCGCGTCCGGCTTG 62.424 66.667 5.77 0.00 40.44 4.01
450 451 3.007070 CTTTCGTCGGCCCGTTTCG 62.007 63.158 1.63 7.40 0.00 3.46
451 452 1.223417 TTCTTTCGTCGGCCCGTTTC 61.223 55.000 1.63 0.00 0.00 2.78
452 453 1.227615 TTCTTTCGTCGGCCCGTTT 60.228 52.632 1.63 0.00 0.00 3.60
453 454 1.957695 GTTCTTTCGTCGGCCCGTT 60.958 57.895 1.63 0.00 0.00 4.44
454 455 2.356673 GTTCTTTCGTCGGCCCGT 60.357 61.111 1.63 0.00 0.00 5.28
455 456 2.356553 TGTTCTTTCGTCGGCCCG 60.357 61.111 0.00 0.00 0.00 6.13
456 457 1.595929 TGTGTTCTTTCGTCGGCCC 60.596 57.895 0.00 0.00 0.00 5.80
457 458 1.568025 GTGTGTTCTTTCGTCGGCC 59.432 57.895 0.00 0.00 0.00 6.13
458 459 1.568025 GGTGTGTTCTTTCGTCGGC 59.432 57.895 0.00 0.00 0.00 5.54
459 460 0.595567 TCGGTGTGTTCTTTCGTCGG 60.596 55.000 0.00 0.00 0.00 4.79
460 461 0.501435 GTCGGTGTGTTCTTTCGTCG 59.499 55.000 0.00 0.00 0.00 5.12
461 462 0.501435 CGTCGGTGTGTTCTTTCGTC 59.499 55.000 0.00 0.00 0.00 4.20
462 463 1.485032 GCGTCGGTGTGTTCTTTCGT 61.485 55.000 0.00 0.00 0.00 3.85
463 464 1.200839 GCGTCGGTGTGTTCTTTCG 59.799 57.895 0.00 0.00 0.00 3.46
464 465 1.200839 CGCGTCGGTGTGTTCTTTC 59.799 57.895 0.00 0.00 0.00 2.62
465 466 0.806884 TTCGCGTCGGTGTGTTCTTT 60.807 50.000 5.77 0.00 0.00 2.52
466 467 0.806884 TTTCGCGTCGGTGTGTTCTT 60.807 50.000 5.77 0.00 0.00 2.52
467 468 1.227031 TTTCGCGTCGGTGTGTTCT 60.227 52.632 5.77 0.00 0.00 3.01
468 469 1.083847 GTTTCGCGTCGGTGTGTTC 60.084 57.895 5.77 0.00 0.00 3.18
469 470 1.810441 TGTTTCGCGTCGGTGTGTT 60.810 52.632 5.77 0.00 0.00 3.32
470 471 2.202770 TGTTTCGCGTCGGTGTGT 60.203 55.556 5.77 0.00 0.00 3.72
471 472 2.244382 GTGTTTCGCGTCGGTGTG 59.756 61.111 5.77 0.00 0.00 3.82
472 473 2.202770 TGTGTTTCGCGTCGGTGT 60.203 55.556 5.77 0.00 0.00 4.16
473 474 2.244382 GTGTGTTTCGCGTCGGTG 59.756 61.111 5.77 0.00 0.00 4.94
474 475 2.202770 TGTGTGTTTCGCGTCGGT 60.203 55.556 5.77 0.00 0.00 4.69
475 476 2.244382 GTGTGTGTTTCGCGTCGG 59.756 61.111 5.77 0.00 0.00 4.79
476 477 2.128637 CGTGTGTGTTTCGCGTCG 60.129 61.111 5.77 0.00 34.71 5.12
477 478 1.084478 GTCGTGTGTGTTTCGCGTC 60.084 57.895 5.77 0.00 39.38 5.19
478 479 2.852087 CGTCGTGTGTGTTTCGCGT 61.852 57.895 5.77 0.00 39.38 6.01
479 480 2.128637 CGTCGTGTGTGTTTCGCG 60.129 61.111 0.00 0.00 39.65 5.87
480 481 2.423039 GCGTCGTGTGTGTTTCGC 60.423 61.111 0.00 0.00 37.17 4.70
481 482 2.128637 CGCGTCGTGTGTGTTTCG 60.129 61.111 0.00 0.00 0.00 3.46
482 483 2.244382 CCGCGTCGTGTGTGTTTC 59.756 61.111 4.92 0.00 0.00 2.78
483 484 3.266376 CCCGCGTCGTGTGTGTTT 61.266 61.111 4.92 0.00 0.00 2.83
502 503 3.287121 GAACTGTGCGCTCGCTGTG 62.287 63.158 9.73 7.45 42.51 3.66
503 504 3.038417 GAACTGTGCGCTCGCTGT 61.038 61.111 9.73 6.44 42.51 4.40
504 505 2.736236 AGAACTGTGCGCTCGCTG 60.736 61.111 9.73 5.78 42.51 5.18
505 506 2.736236 CAGAACTGTGCGCTCGCT 60.736 61.111 9.73 0.00 42.51 4.93
506 507 4.436448 GCAGAACTGTGCGCTCGC 62.436 66.667 9.73 7.38 42.35 5.03
512 513 2.405892 ATTTTCGTGCAGAACTGTGC 57.594 45.000 3.77 0.00 44.27 4.57
513 514 4.350346 TGAAATTTTCGTGCAGAACTGTG 58.650 39.130 4.76 0.00 38.83 3.66
514 515 4.335315 TCTGAAATTTTCGTGCAGAACTGT 59.665 37.500 4.76 0.00 38.83 3.55
515 516 4.672413 GTCTGAAATTTTCGTGCAGAACTG 59.328 41.667 7.81 0.00 38.83 3.16
516 517 4.261197 GGTCTGAAATTTTCGTGCAGAACT 60.261 41.667 12.37 0.00 39.54 3.01
517 518 3.975035 GGTCTGAAATTTTCGTGCAGAAC 59.025 43.478 7.81 7.01 38.83 3.01
518 519 3.303725 CGGTCTGAAATTTTCGTGCAGAA 60.304 43.478 7.81 0.00 37.35 3.02
519 520 2.223144 CGGTCTGAAATTTTCGTGCAGA 59.777 45.455 4.76 3.15 33.58 4.26
520 521 2.032030 ACGGTCTGAAATTTTCGTGCAG 60.032 45.455 4.76 0.00 0.00 4.41
521 522 1.944024 ACGGTCTGAAATTTTCGTGCA 59.056 42.857 4.76 0.00 0.00 4.57
522 523 2.307049 CACGGTCTGAAATTTTCGTGC 58.693 47.619 14.08 0.00 40.71 5.34
524 525 3.744426 CCTACACGGTCTGAAATTTTCGT 59.256 43.478 4.76 0.00 0.00 3.85
525 526 3.424433 GCCTACACGGTCTGAAATTTTCG 60.424 47.826 4.76 0.68 34.25 3.46
526 527 3.424433 CGCCTACACGGTCTGAAATTTTC 60.424 47.826 2.05 2.05 34.25 2.29
527 528 2.482721 CGCCTACACGGTCTGAAATTTT 59.517 45.455 0.00 0.00 34.25 1.82
528 529 2.073816 CGCCTACACGGTCTGAAATTT 58.926 47.619 0.00 0.00 34.25 1.82
529 530 1.722011 CGCCTACACGGTCTGAAATT 58.278 50.000 0.00 0.00 34.25 1.82
530 531 3.436001 CGCCTACACGGTCTGAAAT 57.564 52.632 0.00 0.00 34.25 2.17
531 532 4.979204 CGCCTACACGGTCTGAAA 57.021 55.556 0.00 0.00 34.25 2.69
564 565 3.584052 CTCGTCGCCCTAGGTCCG 61.584 72.222 8.29 10.27 0.00 4.79
565 566 2.439883 ACTCGTCGCCCTAGGTCC 60.440 66.667 8.29 0.00 0.00 4.46
566 567 2.821688 CGACTCGTCGCCCTAGGTC 61.822 68.421 8.29 0.00 46.50 3.85
567 568 2.823147 CGACTCGTCGCCCTAGGT 60.823 66.667 8.29 0.00 46.50 3.08
628 629 4.467084 GGGCGCGGGATGAGACAA 62.467 66.667 8.83 0.00 0.00 3.18
1009 1012 2.038269 GCGGAAAACAGGGATGCGA 61.038 57.895 0.00 0.00 0.00 5.10
1036 1040 4.457496 ACCAGCCAGATGGACGCG 62.457 66.667 9.31 3.53 43.57 6.01
1063 1067 0.691078 GGCAGGGATGAGGGTCAGTA 60.691 60.000 0.00 0.00 0.00 2.74
1232 1252 1.893137 AGTGTTGCGAGATACCACTCA 59.107 47.619 0.00 0.00 36.80 3.41
1248 1268 0.314302 AGCGTAAACTGCGAGAGTGT 59.686 50.000 0.00 0.00 34.02 3.55
1333 1364 1.434513 TTCTCCCCCATGTTGCCAGT 61.435 55.000 0.00 0.00 0.00 4.00
1334 1365 0.682209 CTTCTCCCCCATGTTGCCAG 60.682 60.000 0.00 0.00 0.00 4.85
1345 1376 0.332972 ATCACAAAGGCCTTCTCCCC 59.667 55.000 20.79 0.00 0.00 4.81
1384 1415 3.601443 ATTGTCTTCCTCTTCCGAGTG 57.399 47.619 0.00 0.00 35.43 3.51
1402 1439 3.461061 CAGCATCGTCATCACTGGTATT 58.539 45.455 0.00 0.00 0.00 1.89
1406 1443 0.812811 CCCAGCATCGTCATCACTGG 60.813 60.000 0.00 0.00 46.10 4.00
1416 1453 2.110967 CACAAGAGCCCCAGCATCG 61.111 63.158 0.00 0.00 43.56 3.84
1422 1459 2.055689 CTGTGGTCACAAGAGCCCCA 62.056 60.000 5.27 0.00 41.33 4.96
1423 1460 1.302832 CTGTGGTCACAAGAGCCCC 60.303 63.158 5.27 0.00 41.33 5.80
1440 1477 0.325296 TACATGAGAACCTCGCCCCT 60.325 55.000 0.00 0.00 32.35 4.79
1541 1588 9.466497 AATTCAGGTGATATTGACAAACTACAT 57.534 29.630 0.00 0.00 0.00 2.29
1571 1618 5.940192 AACGCTTATGAACTGTCAAATGA 57.060 34.783 0.00 0.00 37.30 2.57
1575 1622 4.890088 AGGTAACGCTTATGAACTGTCAA 58.110 39.130 0.00 0.00 46.39 3.18
1605 1652 7.383300 CACTCAAAATTCCAAATGTCTTCCTTC 59.617 37.037 0.00 0.00 0.00 3.46
1618 1665 0.968405 GGCTGGCACTCAAAATTCCA 59.032 50.000 0.00 0.00 0.00 3.53
1640 1689 5.178438 GCTATCTTCCTTACAAGCATACAGC 59.822 44.000 0.00 0.00 46.19 4.40
1696 1747 5.590259 ACAGTTAATGGCTTGATGGTATCAC 59.410 40.000 0.00 0.00 39.39 3.06
1811 1876 3.763057 GGTACCATAATCCAATCCACCC 58.237 50.000 7.15 0.00 0.00 4.61
1828 1893 0.997196 GTTCAATGCGACGAGGGTAC 59.003 55.000 0.00 0.00 0.00 3.34
1840 1911 6.480981 ACTCAATTTCCAAAAGCAGTTCAATG 59.519 34.615 0.00 0.00 0.00 2.82
1841 1912 6.480981 CACTCAATTTCCAAAAGCAGTTCAAT 59.519 34.615 0.00 0.00 0.00 2.57
1898 1969 3.316588 TGTGTTCCGCAATGAAAAGCTAA 59.683 39.130 0.00 0.00 0.00 3.09
2022 2141 1.135960 TGAACTGTGATGTGTCCCCA 58.864 50.000 0.00 0.00 0.00 4.96
2115 2265 4.336433 GTGATATGGTGTACTGCTGCAATT 59.664 41.667 3.02 0.00 0.00 2.32
2427 2596 5.605534 ACAAGAAGATAGTGCGCAATATCT 58.394 37.500 40.05 40.05 46.76 1.98
2482 2670 7.885922 TCCAGTAAGCATAAAATCAACCAGTAA 59.114 33.333 0.00 0.00 0.00 2.24
2483 2671 7.335924 GTCCAGTAAGCATAAAATCAACCAGTA 59.664 37.037 0.00 0.00 0.00 2.74
2484 2672 6.151144 GTCCAGTAAGCATAAAATCAACCAGT 59.849 38.462 0.00 0.00 0.00 4.00
2485 2673 6.150976 TGTCCAGTAAGCATAAAATCAACCAG 59.849 38.462 0.00 0.00 0.00 4.00
2486 2674 6.007076 TGTCCAGTAAGCATAAAATCAACCA 58.993 36.000 0.00 0.00 0.00 3.67
2487 2675 6.509418 TGTCCAGTAAGCATAAAATCAACC 57.491 37.500 0.00 0.00 0.00 3.77
2488 2676 6.473455 GCATGTCCAGTAAGCATAAAATCAAC 59.527 38.462 0.00 0.00 0.00 3.18
2489 2677 6.405731 GGCATGTCCAGTAAGCATAAAATCAA 60.406 38.462 0.00 0.00 34.01 2.57
2490 2678 5.067674 GGCATGTCCAGTAAGCATAAAATCA 59.932 40.000 0.00 0.00 34.01 2.57
2491 2679 5.067674 TGGCATGTCCAGTAAGCATAAAATC 59.932 40.000 4.93 0.00 40.72 2.17
2492 2680 4.955450 TGGCATGTCCAGTAAGCATAAAAT 59.045 37.500 4.93 0.00 40.72 1.82
2493 2681 4.339748 TGGCATGTCCAGTAAGCATAAAA 58.660 39.130 4.93 0.00 40.72 1.52
2494 2682 3.961849 TGGCATGTCCAGTAAGCATAAA 58.038 40.909 4.93 0.00 40.72 1.40
2495 2683 3.643199 TGGCATGTCCAGTAAGCATAA 57.357 42.857 4.93 0.00 40.72 1.90
2649 2911 3.121279 CGCTTCATGGGTCGTAATATTCG 59.879 47.826 0.00 0.00 0.00 3.34
2745 3015 2.325509 ATACACAAACGAAAAGCCGC 57.674 45.000 0.00 0.00 0.00 6.53
2776 3047 7.594015 CACAAATCAGCTATAAATCCAAGATGC 59.406 37.037 0.00 0.00 0.00 3.91
2814 3085 5.067805 GGCAGTATTGTTAAAATCCTGGAGG 59.932 44.000 1.52 0.00 0.00 4.30
2973 3247 8.605746 CAAGCCAATGACACCATTAAATAATTG 58.394 33.333 0.00 0.00 40.81 2.32
3011 3297 7.149973 TCCGTATCAATTAAGGCTGTATACAC 58.850 38.462 0.08 0.00 30.20 2.90
3083 3369 6.198639 AGATAGCTTCCTTCTAACTTCCTCA 58.801 40.000 0.00 0.00 0.00 3.86
3098 3384 9.794828 TGGCATACCTCCAATGAAGATAGCTTC 62.795 44.444 13.84 13.84 42.99 3.86
3410 3703 0.751277 CAGCCGCCATACCCATCAAA 60.751 55.000 0.00 0.00 0.00 2.69
3446 3741 0.952984 GCCAGTGTCTGAGAGGCAAC 60.953 60.000 5.66 0.00 44.59 4.17
3447 3742 1.372683 GCCAGTGTCTGAGAGGCAA 59.627 57.895 5.66 0.00 44.59 4.52
3483 3781 6.760298 CGGAGATGTGTCTAGTAGTTGTAGTA 59.240 42.308 0.00 0.00 33.97 1.82
3484 3782 5.585445 CGGAGATGTGTCTAGTAGTTGTAGT 59.415 44.000 0.00 0.00 33.97 2.73
3486 3784 5.494724 ACGGAGATGTGTCTAGTAGTTGTA 58.505 41.667 0.00 0.00 33.97 2.41
3532 4326 1.450312 GCGGCAGACTGGCATTAGT 60.450 57.895 26.64 0.00 43.94 2.24
3577 4371 0.643820 CGCGACAAGTAATTCCGGAC 59.356 55.000 1.83 0.00 0.00 4.79
3668 4462 2.585900 ACATAGTACTCCCTCTGTCCCA 59.414 50.000 0.00 0.00 0.00 4.37
3674 4468 8.062536 AGAATCACTAAACATAGTACTCCCTCT 58.937 37.037 0.00 0.00 0.00 3.69
3807 4601 5.364778 AGAAAAGGCAAACCCATTACAAAC 58.635 37.500 0.00 0.00 36.11 2.93
3817 4611 5.163447 ACCAGTAAGAAAGAAAAGGCAAACC 60.163 40.000 0.00 0.00 0.00 3.27
3832 4626 2.370519 TGCCACAGCTAAACCAGTAAGA 59.629 45.455 0.00 0.00 40.80 2.10
3942 4738 3.637911 ATATGGTACCAAAGCGGACAA 57.362 42.857 20.76 0.00 38.63 3.18
4022 4897 5.728351 TTTTGAAGGAGACACTTGTTACG 57.272 39.130 0.00 0.00 0.00 3.18
4104 4979 9.632807 AATGCGCAGAGTTACAAAAATAATAAA 57.367 25.926 18.32 0.00 0.00 1.40
4111 4986 4.286910 GACAATGCGCAGAGTTACAAAAA 58.713 39.130 18.32 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.