Multiple sequence alignment - TraesCS1B01G062500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G062500 chr1B 100.000 4987 0 0 1 4987 47511483 47506497 0.000000e+00 9210.0
1 TraesCS1B01G062500 chr1B 86.796 977 95 9 3253 4207 47391388 47390424 0.000000e+00 1059.0
2 TraesCS1B01G062500 chr1B 87.534 738 83 5 3251 3984 47545628 47546360 0.000000e+00 845.0
3 TraesCS1B01G062500 chr1B 84.329 887 79 24 1456 2311 47393059 47392202 0.000000e+00 813.0
4 TraesCS1B01G062500 chr1B 80.760 842 128 8 1459 2289 47544251 47545069 1.180000e-175 627.0
5 TraesCS1B01G062500 chr1B 89.855 414 36 6 2852 3263 47391851 47391442 1.230000e-145 527.0
6 TraesCS1B01G062500 chr1B 74.885 653 126 27 1539 2160 47160541 47161186 3.830000e-66 263.0
7 TraesCS1B01G062500 chr1B 84.956 113 12 4 1243 1355 47393210 47393103 5.280000e-20 110.0
8 TraesCS1B01G062500 chr1B 91.549 71 6 0 2852 2922 47545197 47545267 1.140000e-16 99.0
9 TraesCS1B01G062500 chr1A 95.248 1894 66 11 1376 3263 50845476 50843601 0.000000e+00 2977.0
10 TraesCS1B01G062500 chr1A 95.138 1378 48 4 3251 4614 50843552 50842180 0.000000e+00 2156.0
11 TraesCS1B01G062500 chr1A 95.581 1335 42 2 3251 4574 29877498 29876170 0.000000e+00 2122.0
12 TraesCS1B01G062500 chr1A 94.974 776 33 3 1458 2228 29883702 29882928 0.000000e+00 1212.0
13 TraesCS1B01G062500 chr1A 88.171 820 59 12 2455 3263 29878339 29877547 0.000000e+00 942.0
14 TraesCS1B01G062500 chr1A 88.076 738 81 4 3251 3984 29873864 29873130 0.000000e+00 869.0
15 TraesCS1B01G062500 chr1A 87.690 723 82 4 3266 3984 50838333 50837614 0.000000e+00 835.0
16 TraesCS1B01G062500 chr1A 87.705 610 42 12 784 1367 50846609 50846007 0.000000e+00 680.0
17 TraesCS1B01G062500 chr1A 95.652 322 10 4 4670 4987 29876170 29875849 9.570000e-142 514.0
18 TraesCS1B01G062500 chr1A 89.926 407 15 8 4591 4987 50842167 50841777 7.450000e-138 501.0
19 TraesCS1B01G062500 chr1A 80.286 629 93 19 1541 2158 29993774 29994382 3.540000e-121 446.0
20 TraesCS1B01G062500 chr1A 78.529 666 108 23 1539 2191 50927356 50927999 6.010000e-109 405.0
21 TraesCS1B01G062500 chr1A 84.568 324 32 9 2947 3255 29874241 29873921 6.270000e-79 305.0
22 TraesCS1B01G062500 chr1A 75.349 645 131 19 1539 2160 29608026 29608665 8.170000e-73 285.0
23 TraesCS1B01G062500 chr1A 87.603 242 24 6 3016 3255 50838645 50838408 4.920000e-70 276.0
24 TraesCS1B01G062500 chr1A 94.915 177 5 1 2286 2458 29882924 29882748 1.770000e-69 274.0
25 TraesCS1B01G062500 chr1A 83.446 296 16 18 484 774 29884182 29883915 1.390000e-60 244.0
26 TraesCS1B01G062500 chr1A 93.056 144 10 0 3841 3984 29873093 29872950 1.410000e-50 211.0
27 TraesCS1B01G062500 chr1A 80.731 301 18 19 486 774 50846861 50846589 1.100000e-46 198.0
28 TraesCS1B01G062500 chr1A 97.468 79 2 0 784 862 29883934 29883856 8.710000e-28 135.0
29 TraesCS1B01G062500 chr1A 92.391 92 6 1 339 430 29884287 29884197 4.050000e-26 130.0
30 TraesCS1B01G062500 chr1A 89.474 95 8 2 337 430 50846971 50846878 8.770000e-23 119.0
31 TraesCS1B01G062500 chr1A 77.914 163 22 8 2783 2938 29994938 29995093 6.880000e-14 89.8
32 TraesCS1B01G062500 chr1A 95.833 48 1 1 431 477 75897594 75897547 5.350000e-10 76.8
33 TraesCS1B01G062500 chr1A 95.833 48 1 1 431 477 365806348 365806301 5.350000e-10 76.8
34 TraesCS1B01G062500 chr1A 100.000 37 0 0 440 476 554560331 554560295 8.960000e-08 69.4
35 TraesCS1B01G062500 chr1A 85.484 62 6 3 1370 1429 50846296 50846236 1.500000e-05 62.1
36 TraesCS1B01G062500 chr4A 98.276 348 4 1 1 346 652092138 652092485 4.270000e-170 608.0
37 TraesCS1B01G062500 chr4A 97.983 347 5 1 1 345 652104042 652104388 7.140000e-168 601.0
38 TraesCS1B01G062500 chr4A 93.750 48 2 1 431 477 101660283 101660330 2.490000e-08 71.3
39 TraesCS1B01G062500 chr1D 97.983 347 5 1 1 345 451257591 451257245 7.140000e-168 601.0
40 TraesCS1B01G062500 chr1D 81.924 603 95 10 3386 3981 28819312 28818717 9.640000e-137 497.0
41 TraesCS1B01G062500 chr1D 78.481 632 103 21 1539 2158 28821647 28821037 2.820000e-102 383.0
42 TraesCS1B01G062500 chr1D 76.957 690 122 25 1539 2205 28978452 28977777 4.750000e-95 359.0
43 TraesCS1B01G062500 chr1D 76.031 655 122 28 1539 2170 28500897 28501539 1.740000e-79 307.0
44 TraesCS1B01G062500 chr1D 75.342 657 133 21 1539 2170 28486057 28486709 6.320000e-74 289.0
45 TraesCS1B01G062500 chr6B 97.695 347 6 1 1 345 624792457 624792803 3.320000e-166 595.0
46 TraesCS1B01G062500 chr4B 97.406 347 7 1 1 345 99077346 99077000 1.550000e-164 590.0
47 TraesCS1B01G062500 chr2B 96.893 354 8 2 1 352 18143712 18144064 1.550000e-164 590.0
48 TraesCS1B01G062500 chr2B 96.875 352 9 1 1 350 181620375 181620024 5.560000e-164 588.0
49 TraesCS1B01G062500 chr2B 88.333 60 3 4 420 477 680214957 680215014 8.960000e-08 69.4
50 TraesCS1B01G062500 chr5D 97.118 347 8 1 1 345 413676142 413675796 7.190000e-163 584.0
51 TraesCS1B01G062500 chr3D 97.118 347 8 1 1 345 603318610 603318264 7.190000e-163 584.0
52 TraesCS1B01G062500 chr5B 75.245 408 54 34 2852 3255 81176395 81176031 3.110000e-32 150.0
53 TraesCS1B01G062500 chr5B 100.000 41 0 0 437 477 458614911 458614951 5.350000e-10 76.8
54 TraesCS1B01G062500 chr5B 100.000 40 0 0 438 477 424361577 424361616 1.930000e-09 75.0
55 TraesCS1B01G062500 chr5B 82.716 81 12 2 543 623 610111147 610111069 2.490000e-08 71.3
56 TraesCS1B01G062500 chr4D 95.833 48 1 1 431 477 143870948 143870995 5.350000e-10 76.8
57 TraesCS1B01G062500 chr4D 93.750 48 1 2 431 477 437130992 437130946 2.490000e-08 71.3
58 TraesCS1B01G062500 chr2D 92.857 42 2 1 565 606 648455924 648455884 5.390000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G062500 chr1B 47506497 47511483 4986 True 9210.000000 9210 100.000000 1 4987 1 chr1B.!!$R1 4986
1 TraesCS1B01G062500 chr1B 47390424 47393210 2786 True 627.250000 1059 86.484000 1243 4207 4 chr1B.!!$R2 2964
2 TraesCS1B01G062500 chr1B 47544251 47546360 2109 False 523.666667 845 86.614333 1459 3984 3 chr1B.!!$F2 2525
3 TraesCS1B01G062500 chr1B 47160541 47161186 645 False 263.000000 263 74.885000 1539 2160 1 chr1B.!!$F1 621
4 TraesCS1B01G062500 chr1A 50837614 50846971 9357 True 867.122222 2977 88.777667 337 4987 9 chr1A.!!$R6 4650
5 TraesCS1B01G062500 chr1A 29872950 29878339 5389 True 827.166667 2122 90.850667 2455 4987 6 chr1A.!!$R4 2532
6 TraesCS1B01G062500 chr1A 50927356 50927999 643 False 405.000000 405 78.529000 1539 2191 1 chr1A.!!$F2 652
7 TraesCS1B01G062500 chr1A 29882748 29884287 1539 True 399.000000 1212 92.638800 339 2458 5 chr1A.!!$R5 2119
8 TraesCS1B01G062500 chr1A 29608026 29608665 639 False 285.000000 285 75.349000 1539 2160 1 chr1A.!!$F1 621
9 TraesCS1B01G062500 chr1A 29993774 29995093 1319 False 267.900000 446 79.100000 1541 2938 2 chr1A.!!$F3 1397
10 TraesCS1B01G062500 chr1D 28818717 28821647 2930 True 440.000000 497 80.202500 1539 3981 2 chr1D.!!$R3 2442
11 TraesCS1B01G062500 chr1D 28977777 28978452 675 True 359.000000 359 76.957000 1539 2205 1 chr1D.!!$R1 666
12 TraesCS1B01G062500 chr1D 28500897 28501539 642 False 307.000000 307 76.031000 1539 2170 1 chr1D.!!$F2 631
13 TraesCS1B01G062500 chr1D 28486057 28486709 652 False 289.000000 289 75.342000 1539 2170 1 chr1D.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.032952 TCGGTGGTGTCGAAGGAAAG 59.967 55.000 0.00 0.0 33.42 2.62 F
1055 1139 0.034477 GTCGATTTGATGGTGGGGGT 60.034 55.000 0.00 0.0 0.00 4.95 F
1056 1140 0.034574 TCGATTTGATGGTGGGGGTG 60.035 55.000 0.00 0.0 0.00 4.61 F
1112 1196 0.104304 GCCGCGGAGAGAAGGAATAA 59.896 55.000 33.48 0.0 0.00 1.40 F
1125 1209 0.837940 GGAATAAAGGTCTCGCCCCT 59.162 55.000 0.00 0.0 38.26 4.79 F
1357 1441 1.112315 CGAGGAGAGGGATGAGGTGG 61.112 65.000 0.00 0.0 0.00 4.61 F
2702 3335 1.358103 AGTCTGCTAGTGTAGGTGGGA 59.642 52.381 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 2045 0.248377 CTTCGTACTTACTCCCGCCG 60.248 60.000 0.0 0.0 0.00 6.46 R
2485 3115 1.210155 GTCCGACAATGCAAGGCAC 59.790 57.895 0.0 0.0 43.04 5.01 R
2850 3488 4.756502 ACCTGGAAGAAATCTACGCTAAC 58.243 43.478 0.0 0.0 34.07 2.34 R
2923 8159 5.015813 AGGGACAATTCTCAAAGGGAAAT 57.984 39.130 0.0 0.0 0.00 2.17 R
3167 8497 6.092955 TGCAGATTGAAGCAAAAAGAAGAT 57.907 33.333 0.0 0.0 37.90 2.40 R
3216 8563 7.359514 GGTCAGCAAGCATTTCAAATCTTTAAC 60.360 37.037 0.0 0.0 0.00 2.01 R
4458 10099 0.036765 GATACAGGCACACCCAACGA 60.037 55.000 0.0 0.0 36.11 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.571757 TCGTCATGCGAGGGTGTC 59.428 61.111 7.93 0.00 45.68 3.67
24 25 2.261361 CGTCATGCGAGGGTGTCA 59.739 61.111 3.85 0.00 44.77 3.58
25 26 1.807165 CGTCATGCGAGGGTGTCAG 60.807 63.158 3.85 0.00 44.77 3.51
26 27 1.293498 GTCATGCGAGGGTGTCAGT 59.707 57.895 0.00 0.00 0.00 3.41
27 28 0.320771 GTCATGCGAGGGTGTCAGTT 60.321 55.000 0.00 0.00 0.00 3.16
28 29 0.037326 TCATGCGAGGGTGTCAGTTC 60.037 55.000 0.00 0.00 0.00 3.01
29 30 0.036952 CATGCGAGGGTGTCAGTTCT 60.037 55.000 0.00 0.00 0.00 3.01
30 31 0.036952 ATGCGAGGGTGTCAGTTCTG 60.037 55.000 0.00 0.00 0.00 3.02
31 32 1.112916 TGCGAGGGTGTCAGTTCTGA 61.113 55.000 0.00 0.00 0.00 3.27
32 33 0.033504 GCGAGGGTGTCAGTTCTGAA 59.966 55.000 3.99 0.00 0.00 3.02
33 34 1.937108 GCGAGGGTGTCAGTTCTGAAG 60.937 57.143 3.99 0.00 0.00 3.02
34 35 1.341531 CGAGGGTGTCAGTTCTGAAGT 59.658 52.381 3.99 0.00 0.00 3.01
35 36 2.224066 CGAGGGTGTCAGTTCTGAAGTT 60.224 50.000 3.99 0.00 0.00 2.66
36 37 3.394719 GAGGGTGTCAGTTCTGAAGTTC 58.605 50.000 3.99 0.00 0.00 3.01
37 38 2.135933 GGGTGTCAGTTCTGAAGTTCG 58.864 52.381 3.99 0.00 0.00 3.95
38 39 2.223971 GGGTGTCAGTTCTGAAGTTCGA 60.224 50.000 3.99 0.00 0.00 3.71
39 40 3.555168 GGGTGTCAGTTCTGAAGTTCGAT 60.555 47.826 3.99 0.00 0.00 3.59
40 41 3.430218 GGTGTCAGTTCTGAAGTTCGATG 59.570 47.826 3.99 0.00 0.00 3.84
41 42 3.430218 GTGTCAGTTCTGAAGTTCGATGG 59.570 47.826 3.99 0.00 0.00 3.51
42 43 2.413453 GTCAGTTCTGAAGTTCGATGGC 59.587 50.000 3.99 0.00 0.00 4.40
43 44 1.391485 CAGTTCTGAAGTTCGATGGCG 59.609 52.381 0.00 0.00 39.35 5.69
44 45 1.000955 AGTTCTGAAGTTCGATGGCGT 59.999 47.619 0.00 0.00 38.98 5.68
45 46 1.126846 GTTCTGAAGTTCGATGGCGTG 59.873 52.381 0.00 0.00 38.98 5.34
46 47 0.317160 TCTGAAGTTCGATGGCGTGT 59.683 50.000 0.00 0.00 38.98 4.49
47 48 0.716108 CTGAAGTTCGATGGCGTGTC 59.284 55.000 0.00 0.00 38.98 3.67
48 49 0.669318 TGAAGTTCGATGGCGTGTCC 60.669 55.000 0.00 0.00 38.98 4.02
49 50 1.683790 GAAGTTCGATGGCGTGTCCG 61.684 60.000 0.00 0.00 38.98 4.79
50 51 3.186047 GTTCGATGGCGTGTCCGG 61.186 66.667 0.00 0.00 38.98 5.14
51 52 4.444838 TTCGATGGCGTGTCCGGG 62.445 66.667 0.00 0.00 38.98 5.73
54 55 4.832608 GATGGCGTGTCCGGGGAC 62.833 72.222 10.95 10.95 44.77 4.46
62 63 2.750237 GTCCGGGGACATGTTGCC 60.750 66.667 12.90 0.00 44.02 4.52
67 68 4.360405 GGGACATGTTGCCCCGGT 62.360 66.667 10.93 0.00 38.45 5.28
68 69 2.750237 GGACATGTTGCCCCGGTC 60.750 66.667 0.00 0.00 0.00 4.79
69 70 2.351276 GACATGTTGCCCCGGTCT 59.649 61.111 0.00 0.00 0.00 3.85
70 71 2.034066 ACATGTTGCCCCGGTCTG 59.966 61.111 0.00 0.00 0.00 3.51
71 72 2.350895 CATGTTGCCCCGGTCTGA 59.649 61.111 0.00 0.00 0.00 3.27
72 73 1.077501 CATGTTGCCCCGGTCTGAT 60.078 57.895 0.00 0.00 0.00 2.90
73 74 0.680921 CATGTTGCCCCGGTCTGATT 60.681 55.000 0.00 0.00 0.00 2.57
74 75 0.394352 ATGTTGCCCCGGTCTGATTC 60.394 55.000 0.00 0.00 0.00 2.52
75 76 1.299976 GTTGCCCCGGTCTGATTCT 59.700 57.895 0.00 0.00 0.00 2.40
76 77 0.322546 GTTGCCCCGGTCTGATTCTT 60.323 55.000 0.00 0.00 0.00 2.52
77 78 0.404040 TTGCCCCGGTCTGATTCTTT 59.596 50.000 0.00 0.00 0.00 2.52
78 79 0.035439 TGCCCCGGTCTGATTCTTTC 60.035 55.000 0.00 0.00 0.00 2.62
79 80 0.035439 GCCCCGGTCTGATTCTTTCA 60.035 55.000 0.00 0.00 0.00 2.69
80 81 1.613255 GCCCCGGTCTGATTCTTTCAA 60.613 52.381 0.00 0.00 32.78 2.69
81 82 2.084546 CCCCGGTCTGATTCTTTCAAC 58.915 52.381 0.00 0.00 32.78 3.18
82 83 1.732259 CCCGGTCTGATTCTTTCAACG 59.268 52.381 0.00 0.00 32.78 4.10
83 84 1.732259 CCGGTCTGATTCTTTCAACGG 59.268 52.381 0.00 0.00 38.78 4.44
84 85 1.128692 CGGTCTGATTCTTTCAACGGC 59.871 52.381 0.00 0.00 32.78 5.68
85 86 2.427506 GGTCTGATTCTTTCAACGGCT 58.572 47.619 0.00 0.00 32.78 5.52
86 87 3.596214 GGTCTGATTCTTTCAACGGCTA 58.404 45.455 0.00 0.00 32.78 3.93
87 88 4.192317 GGTCTGATTCTTTCAACGGCTAT 58.808 43.478 0.00 0.00 32.78 2.97
88 89 4.034510 GGTCTGATTCTTTCAACGGCTATG 59.965 45.833 0.00 0.00 32.78 2.23
89 90 4.034510 GTCTGATTCTTTCAACGGCTATGG 59.965 45.833 0.00 0.00 32.78 2.74
90 91 3.941483 CTGATTCTTTCAACGGCTATGGT 59.059 43.478 0.00 0.00 32.78 3.55
91 92 4.331968 TGATTCTTTCAACGGCTATGGTT 58.668 39.130 0.00 0.00 0.00 3.67
92 93 4.764823 TGATTCTTTCAACGGCTATGGTTT 59.235 37.500 0.00 0.00 0.00 3.27
93 94 5.242838 TGATTCTTTCAACGGCTATGGTTTT 59.757 36.000 0.00 0.00 0.00 2.43
94 95 4.497473 TCTTTCAACGGCTATGGTTTTG 57.503 40.909 0.00 0.00 0.00 2.44
95 96 2.715737 TTCAACGGCTATGGTTTTGC 57.284 45.000 0.00 0.00 0.00 3.68
96 97 1.904287 TCAACGGCTATGGTTTTGCT 58.096 45.000 0.00 0.00 0.00 3.91
97 98 2.235016 TCAACGGCTATGGTTTTGCTT 58.765 42.857 0.00 0.00 0.00 3.91
98 99 2.625790 TCAACGGCTATGGTTTTGCTTT 59.374 40.909 0.00 0.00 0.00 3.51
99 100 3.068873 TCAACGGCTATGGTTTTGCTTTT 59.931 39.130 0.00 0.00 0.00 2.27
100 101 3.025287 ACGGCTATGGTTTTGCTTTTG 57.975 42.857 0.00 0.00 0.00 2.44
101 102 2.288763 ACGGCTATGGTTTTGCTTTTGG 60.289 45.455 0.00 0.00 0.00 3.28
102 103 2.076100 GGCTATGGTTTTGCTTTTGGC 58.924 47.619 0.00 0.00 42.22 4.52
115 116 4.053469 GCTTTTGGCAAACTACTTTGGA 57.947 40.909 13.10 0.00 37.78 3.53
116 117 4.051237 GCTTTTGGCAAACTACTTTGGAG 58.949 43.478 13.10 5.20 37.78 3.86
117 118 4.620982 CTTTTGGCAAACTACTTTGGAGG 58.379 43.478 13.10 0.00 37.78 4.30
118 119 3.306472 TTGGCAAACTACTTTGGAGGT 57.694 42.857 0.00 0.00 37.78 3.85
119 120 2.858745 TGGCAAACTACTTTGGAGGTC 58.141 47.619 0.00 0.00 37.78 3.85
120 121 2.160205 GGCAAACTACTTTGGAGGTCC 58.840 52.381 0.00 0.00 37.78 4.46
121 122 1.804748 GCAAACTACTTTGGAGGTCCG 59.195 52.381 0.00 0.00 37.78 4.79
122 123 2.809299 GCAAACTACTTTGGAGGTCCGT 60.809 50.000 0.00 0.00 37.78 4.69
123 124 3.555586 GCAAACTACTTTGGAGGTCCGTA 60.556 47.826 0.00 0.00 37.78 4.02
124 125 4.634199 CAAACTACTTTGGAGGTCCGTAA 58.366 43.478 0.00 0.00 39.43 3.18
125 126 4.961438 AACTACTTTGGAGGTCCGTAAA 57.039 40.909 0.00 0.00 39.43 2.01
126 127 4.532314 ACTACTTTGGAGGTCCGTAAAG 57.468 45.455 11.59 11.59 39.43 1.85
127 128 2.180432 ACTTTGGAGGTCCGTAAAGC 57.820 50.000 12.57 0.00 39.43 3.51
128 129 1.697982 ACTTTGGAGGTCCGTAAAGCT 59.302 47.619 12.57 0.00 39.43 3.74
129 130 2.076863 CTTTGGAGGTCCGTAAAGCTG 58.923 52.381 0.00 0.00 39.43 4.24
130 131 0.321298 TTGGAGGTCCGTAAAGCTGC 60.321 55.000 0.00 0.00 39.43 5.25
131 132 1.192146 TGGAGGTCCGTAAAGCTGCT 61.192 55.000 0.00 0.00 39.43 4.24
132 133 0.741221 GGAGGTCCGTAAAGCTGCTG 60.741 60.000 1.35 0.00 32.97 4.41
133 134 0.246635 GAGGTCCGTAAAGCTGCTGA 59.753 55.000 1.35 0.00 0.00 4.26
134 135 0.905357 AGGTCCGTAAAGCTGCTGAT 59.095 50.000 1.35 0.00 0.00 2.90
135 136 1.134670 AGGTCCGTAAAGCTGCTGATC 60.135 52.381 1.35 0.00 0.00 2.92
136 137 1.405526 GGTCCGTAAAGCTGCTGATCA 60.406 52.381 1.35 0.00 0.00 2.92
137 138 1.929836 GTCCGTAAAGCTGCTGATCAG 59.070 52.381 18.84 18.84 45.62 2.90
146 147 3.640231 GCTGATCAGCGATGGAGC 58.360 61.111 30.64 7.76 45.29 4.70
147 148 1.960250 GCTGATCAGCGATGGAGCC 60.960 63.158 30.64 3.71 45.29 4.70
148 149 1.664017 CTGATCAGCGATGGAGCCG 60.664 63.158 10.38 0.00 38.01 5.52
168 169 3.022981 GTCGAGCTTGGACGAAGAG 57.977 57.895 0.00 0.00 40.12 2.85
169 170 0.456995 GTCGAGCTTGGACGAAGAGG 60.457 60.000 0.00 0.00 40.12 3.69
170 171 0.894184 TCGAGCTTGGACGAAGAGGT 60.894 55.000 0.00 0.00 35.62 3.85
171 172 0.734253 CGAGCTTGGACGAAGAGGTG 60.734 60.000 0.79 0.00 32.82 4.00
172 173 0.603569 GAGCTTGGACGAAGAGGTGA 59.396 55.000 0.79 0.00 32.82 4.02
173 174 1.205893 GAGCTTGGACGAAGAGGTGAT 59.794 52.381 0.79 0.00 32.82 3.06
174 175 1.205893 AGCTTGGACGAAGAGGTGATC 59.794 52.381 0.79 0.00 32.82 2.92
175 176 1.205893 GCTTGGACGAAGAGGTGATCT 59.794 52.381 0.79 0.00 41.27 2.75
176 177 2.886081 CTTGGACGAAGAGGTGATCTG 58.114 52.381 0.00 0.00 38.67 2.90
177 178 1.924731 TGGACGAAGAGGTGATCTGT 58.075 50.000 0.00 0.00 38.67 3.41
178 179 1.819288 TGGACGAAGAGGTGATCTGTC 59.181 52.381 0.00 0.00 38.67 3.51
179 180 2.096248 GGACGAAGAGGTGATCTGTCT 58.904 52.381 0.00 0.00 38.67 3.41
180 181 2.494073 GGACGAAGAGGTGATCTGTCTT 59.506 50.000 0.00 4.94 38.67 3.01
181 182 3.056465 GGACGAAGAGGTGATCTGTCTTT 60.056 47.826 0.00 0.00 38.67 2.52
182 183 4.561105 GACGAAGAGGTGATCTGTCTTTT 58.439 43.478 0.00 0.00 38.67 2.27
183 184 4.962155 ACGAAGAGGTGATCTGTCTTTTT 58.038 39.130 0.00 0.00 38.67 1.94
184 185 6.097915 ACGAAGAGGTGATCTGTCTTTTTA 57.902 37.500 0.00 0.00 38.67 1.52
185 186 6.702329 ACGAAGAGGTGATCTGTCTTTTTAT 58.298 36.000 0.00 0.00 38.67 1.40
186 187 6.814146 ACGAAGAGGTGATCTGTCTTTTTATC 59.186 38.462 0.00 0.00 38.67 1.75
187 188 6.256757 CGAAGAGGTGATCTGTCTTTTTATCC 59.743 42.308 0.00 0.00 38.67 2.59
188 189 6.882768 AGAGGTGATCTGTCTTTTTATCCT 57.117 37.500 0.00 0.00 36.69 3.24
189 190 7.264294 AGAGGTGATCTGTCTTTTTATCCTT 57.736 36.000 0.00 0.00 36.69 3.36
190 191 7.694093 AGAGGTGATCTGTCTTTTTATCCTTT 58.306 34.615 0.00 0.00 36.69 3.11
191 192 7.609532 AGAGGTGATCTGTCTTTTTATCCTTTG 59.390 37.037 0.00 0.00 36.69 2.77
192 193 6.660949 AGGTGATCTGTCTTTTTATCCTTTGG 59.339 38.462 0.00 0.00 0.00 3.28
193 194 6.434340 GGTGATCTGTCTTTTTATCCTTTGGT 59.566 38.462 0.00 0.00 0.00 3.67
194 195 7.308435 GTGATCTGTCTTTTTATCCTTTGGTG 58.692 38.462 0.00 0.00 0.00 4.17
195 196 6.434028 TGATCTGTCTTTTTATCCTTTGGTGG 59.566 38.462 0.00 0.00 0.00 4.61
196 197 4.522789 TCTGTCTTTTTATCCTTTGGTGGC 59.477 41.667 0.00 0.00 0.00 5.01
197 198 3.576550 TGTCTTTTTATCCTTTGGTGGCC 59.423 43.478 0.00 0.00 0.00 5.36
198 199 2.823154 TCTTTTTATCCTTTGGTGGCCG 59.177 45.455 0.00 0.00 0.00 6.13
199 200 0.892063 TTTTATCCTTTGGTGGCCGC 59.108 50.000 8.12 8.12 0.00 6.53
200 201 0.039035 TTTATCCTTTGGTGGCCGCT 59.961 50.000 17.49 0.00 0.00 5.52
201 202 0.039035 TTATCCTTTGGTGGCCGCTT 59.961 50.000 17.49 0.00 0.00 4.68
202 203 0.393808 TATCCTTTGGTGGCCGCTTC 60.394 55.000 17.49 0.14 0.00 3.86
203 204 3.737172 CCTTTGGTGGCCGCTTCG 61.737 66.667 17.49 2.45 0.00 3.79
213 214 4.351938 CCGCTTCGGTGGTGTCGA 62.352 66.667 0.00 0.00 42.73 4.20
214 215 2.355363 CGCTTCGGTGGTGTCGAA 60.355 61.111 0.00 0.00 43.18 3.71
217 218 3.859221 TTCGGTGGTGTCGAAGGA 58.141 55.556 0.00 0.00 40.99 3.36
218 219 2.126064 TTCGGTGGTGTCGAAGGAA 58.874 52.632 0.00 0.00 40.99 3.36
219 220 0.464870 TTCGGTGGTGTCGAAGGAAA 59.535 50.000 0.00 0.00 40.99 3.13
220 221 0.032952 TCGGTGGTGTCGAAGGAAAG 59.967 55.000 0.00 0.00 33.42 2.62
221 222 0.949105 CGGTGGTGTCGAAGGAAAGG 60.949 60.000 0.00 0.00 0.00 3.11
222 223 0.605589 GGTGGTGTCGAAGGAAAGGG 60.606 60.000 0.00 0.00 0.00 3.95
223 224 0.395312 GTGGTGTCGAAGGAAAGGGA 59.605 55.000 0.00 0.00 0.00 4.20
224 225 0.395312 TGGTGTCGAAGGAAAGGGAC 59.605 55.000 0.00 0.00 0.00 4.46
225 226 0.395312 GGTGTCGAAGGAAAGGGACA 59.605 55.000 0.00 0.00 37.09 4.02
226 227 1.608283 GGTGTCGAAGGAAAGGGACAG 60.608 57.143 0.00 0.00 39.82 3.51
227 228 0.685097 TGTCGAAGGAAAGGGACAGG 59.315 55.000 0.00 0.00 34.71 4.00
228 229 0.673956 GTCGAAGGAAAGGGACAGGC 60.674 60.000 0.00 0.00 0.00 4.85
229 230 1.741770 CGAAGGAAAGGGACAGGCG 60.742 63.158 0.00 0.00 0.00 5.52
230 231 2.034221 AAGGAAAGGGACAGGCGC 59.966 61.111 0.00 0.00 0.00 6.53
231 232 2.470938 GAAGGAAAGGGACAGGCGCT 62.471 60.000 7.64 0.00 42.29 5.92
232 233 2.747855 GGAAAGGGACAGGCGCTG 60.748 66.667 7.64 6.31 40.06 5.18
233 234 2.747855 GAAAGGGACAGGCGCTGG 60.748 66.667 7.64 1.64 40.06 4.85
234 235 3.553095 GAAAGGGACAGGCGCTGGT 62.553 63.158 7.64 5.65 40.06 4.00
235 236 2.180159 GAAAGGGACAGGCGCTGGTA 62.180 60.000 7.64 0.00 40.06 3.25
236 237 1.562672 AAAGGGACAGGCGCTGGTAT 61.563 55.000 7.64 0.00 40.06 2.73
237 238 1.562672 AAGGGACAGGCGCTGGTATT 61.563 55.000 7.64 0.00 40.06 1.89
238 239 1.077716 GGGACAGGCGCTGGTATTT 60.078 57.895 7.64 0.00 35.51 1.40
239 240 1.095807 GGGACAGGCGCTGGTATTTC 61.096 60.000 7.64 0.00 35.51 2.17
240 241 0.392461 GGACAGGCGCTGGTATTTCA 60.392 55.000 7.64 0.00 35.51 2.69
241 242 1.668419 GACAGGCGCTGGTATTTCAT 58.332 50.000 7.64 0.00 35.51 2.57
242 243 2.484770 GGACAGGCGCTGGTATTTCATA 60.485 50.000 7.64 0.00 35.51 2.15
243 244 2.802816 GACAGGCGCTGGTATTTCATAG 59.197 50.000 7.64 0.00 35.51 2.23
244 245 2.146342 CAGGCGCTGGTATTTCATAGG 58.854 52.381 7.64 0.00 0.00 2.57
245 246 2.047061 AGGCGCTGGTATTTCATAGGA 58.953 47.619 7.64 0.00 0.00 2.94
246 247 2.639839 AGGCGCTGGTATTTCATAGGAT 59.360 45.455 7.64 0.00 0.00 3.24
247 248 3.073062 AGGCGCTGGTATTTCATAGGATT 59.927 43.478 7.64 0.00 0.00 3.01
248 249 3.821033 GGCGCTGGTATTTCATAGGATTT 59.179 43.478 7.64 0.00 0.00 2.17
249 250 4.278419 GGCGCTGGTATTTCATAGGATTTT 59.722 41.667 7.64 0.00 0.00 1.82
250 251 5.452777 GCGCTGGTATTTCATAGGATTTTC 58.547 41.667 0.00 0.00 0.00 2.29
251 252 5.562890 GCGCTGGTATTTCATAGGATTTTCC 60.563 44.000 0.00 0.00 36.58 3.13
268 269 8.286191 GGATTTTCCTATCTTTTCAGTCATGT 57.714 34.615 0.00 0.00 32.53 3.21
269 270 9.396022 GGATTTTCCTATCTTTTCAGTCATGTA 57.604 33.333 0.00 0.00 32.53 2.29
272 273 8.737168 TTTCCTATCTTTTCAGTCATGTATGG 57.263 34.615 0.00 0.00 0.00 2.74
273 274 7.437713 TCCTATCTTTTCAGTCATGTATGGT 57.562 36.000 0.00 0.00 0.00 3.55
274 275 7.500992 TCCTATCTTTTCAGTCATGTATGGTC 58.499 38.462 0.00 0.00 0.00 4.02
275 276 6.422100 CCTATCTTTTCAGTCATGTATGGTCG 59.578 42.308 0.00 0.00 0.00 4.79
276 277 4.503910 TCTTTTCAGTCATGTATGGTCGG 58.496 43.478 0.00 0.00 0.00 4.79
277 278 3.973206 TTTCAGTCATGTATGGTCGGT 57.027 42.857 0.00 0.00 0.00 4.69
278 279 2.959507 TCAGTCATGTATGGTCGGTG 57.040 50.000 0.00 0.00 0.00 4.94
279 280 1.134818 TCAGTCATGTATGGTCGGTGC 60.135 52.381 0.00 0.00 0.00 5.01
280 281 1.134699 CAGTCATGTATGGTCGGTGCT 60.135 52.381 0.00 0.00 0.00 4.40
281 282 1.555075 AGTCATGTATGGTCGGTGCTT 59.445 47.619 0.00 0.00 0.00 3.91
282 283 2.764010 AGTCATGTATGGTCGGTGCTTA 59.236 45.455 0.00 0.00 0.00 3.09
283 284 2.864343 GTCATGTATGGTCGGTGCTTAC 59.136 50.000 0.00 0.00 0.00 2.34
284 285 1.858458 CATGTATGGTCGGTGCTTACG 59.142 52.381 0.00 0.00 0.00 3.18
285 286 0.889994 TGTATGGTCGGTGCTTACGT 59.110 50.000 0.00 0.00 0.00 3.57
286 287 1.274596 GTATGGTCGGTGCTTACGTG 58.725 55.000 0.00 0.00 0.00 4.49
287 288 0.458889 TATGGTCGGTGCTTACGTGC 60.459 55.000 0.00 0.00 0.00 5.34
288 289 3.116531 GGTCGGTGCTTACGTGCC 61.117 66.667 0.00 0.00 0.00 5.01
289 290 2.048503 GTCGGTGCTTACGTGCCT 60.049 61.111 0.00 0.00 0.00 4.75
290 291 1.666872 GTCGGTGCTTACGTGCCTT 60.667 57.895 0.00 0.00 0.00 4.35
291 292 1.666553 TCGGTGCTTACGTGCCTTG 60.667 57.895 0.00 0.00 0.00 3.61
292 293 1.959226 CGGTGCTTACGTGCCTTGT 60.959 57.895 0.00 0.00 0.00 3.16
293 294 0.668096 CGGTGCTTACGTGCCTTGTA 60.668 55.000 0.00 0.00 0.00 2.41
294 295 1.515081 GGTGCTTACGTGCCTTGTAA 58.485 50.000 0.00 0.00 0.00 2.41
295 296 1.196127 GGTGCTTACGTGCCTTGTAAC 59.804 52.381 0.00 0.00 0.00 2.50
296 297 2.140717 GTGCTTACGTGCCTTGTAACT 58.859 47.619 0.00 0.00 0.00 2.24
297 298 2.546789 GTGCTTACGTGCCTTGTAACTT 59.453 45.455 0.00 0.00 0.00 2.66
298 299 2.546368 TGCTTACGTGCCTTGTAACTTG 59.454 45.455 0.00 0.00 0.00 3.16
299 300 2.803956 GCTTACGTGCCTTGTAACTTGA 59.196 45.455 0.00 0.00 0.00 3.02
300 301 3.435671 GCTTACGTGCCTTGTAACTTGAT 59.564 43.478 0.00 0.00 0.00 2.57
301 302 4.435651 GCTTACGTGCCTTGTAACTTGATC 60.436 45.833 0.00 0.00 0.00 2.92
302 303 3.402628 ACGTGCCTTGTAACTTGATCT 57.597 42.857 0.00 0.00 0.00 2.75
303 304 3.740115 ACGTGCCTTGTAACTTGATCTT 58.260 40.909 0.00 0.00 0.00 2.40
304 305 4.134563 ACGTGCCTTGTAACTTGATCTTT 58.865 39.130 0.00 0.00 0.00 2.52
305 306 5.302360 ACGTGCCTTGTAACTTGATCTTTA 58.698 37.500 0.00 0.00 0.00 1.85
306 307 5.938125 ACGTGCCTTGTAACTTGATCTTTAT 59.062 36.000 0.00 0.00 0.00 1.40
307 308 6.430000 ACGTGCCTTGTAACTTGATCTTTATT 59.570 34.615 0.00 0.00 0.00 1.40
308 309 6.961554 CGTGCCTTGTAACTTGATCTTTATTC 59.038 38.462 0.00 0.00 0.00 1.75
309 310 7.148407 CGTGCCTTGTAACTTGATCTTTATTCT 60.148 37.037 0.00 0.00 0.00 2.40
310 311 9.162764 GTGCCTTGTAACTTGATCTTTATTCTA 57.837 33.333 0.00 0.00 0.00 2.10
311 312 9.905713 TGCCTTGTAACTTGATCTTTATTCTAT 57.094 29.630 0.00 0.00 0.00 1.98
336 337 5.734855 AAATGAGACACGTATTACCATGC 57.265 39.130 0.00 0.00 0.00 4.06
337 338 3.878160 TGAGACACGTATTACCATGCA 57.122 42.857 0.00 0.00 0.00 3.96
341 342 5.470437 TGAGACACGTATTACCATGCAAAAA 59.530 36.000 0.00 0.00 0.00 1.94
447 454 8.611051 AAAATCAACACTATAGAGTACTCCCT 57.389 34.615 19.38 9.43 33.32 4.20
448 455 7.826918 AATCAACACTATAGAGTACTCCCTC 57.173 40.000 19.38 0.00 33.32 4.30
449 456 5.692928 TCAACACTATAGAGTACTCCCTCC 58.307 45.833 19.38 0.00 33.32 4.30
450 457 4.354893 ACACTATAGAGTACTCCCTCCG 57.645 50.000 19.38 6.74 33.32 4.63
451 458 3.715834 ACACTATAGAGTACTCCCTCCGT 59.284 47.826 19.38 7.36 33.32 4.69
452 459 4.165758 ACACTATAGAGTACTCCCTCCGTT 59.834 45.833 19.38 1.50 33.32 4.44
453 460 4.756135 CACTATAGAGTACTCCCTCCGTTC 59.244 50.000 19.38 0.00 33.32 3.95
454 461 2.322355 TAGAGTACTCCCTCCGTTCG 57.678 55.000 19.38 0.00 31.53 3.95
455 462 0.394080 AGAGTACTCCCTCCGTTCGG 60.394 60.000 19.38 4.74 31.53 4.30
456 463 0.393537 GAGTACTCCCTCCGTTCGGA 60.394 60.000 12.13 13.34 0.00 4.55
457 464 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
458 465 0.890683 GTACTCCCTCCGTTCGGAAA 59.109 55.000 14.79 3.49 33.41 3.13
459 466 1.479730 GTACTCCCTCCGTTCGGAAAT 59.520 52.381 14.79 2.39 33.41 2.17
460 467 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
461 468 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
462 469 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
463 470 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
464 471 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
465 472 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
466 473 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
467 474 3.581755 CTCCGTTCGGAAATACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
468 475 4.181578 CTCCGTTCGGAAATACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
469 476 4.178540 TCCGTTCGGAAATACTTGTCATC 58.821 43.478 11.66 0.00 0.00 2.92
470 477 3.930229 CCGTTCGGAAATACTTGTCATCA 59.070 43.478 5.19 0.00 0.00 3.07
471 478 4.390603 CCGTTCGGAAATACTTGTCATCAA 59.609 41.667 5.19 0.00 0.00 2.57
472 479 5.106869 CCGTTCGGAAATACTTGTCATCAAA 60.107 40.000 5.19 0.00 32.87 2.69
473 480 6.367421 CGTTCGGAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
474 481 7.021196 CGTTCGGAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
475 482 7.007367 CGTTCGGAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
476 483 7.680442 TCGGAAATACTTGTCATCAAAATGA 57.320 32.000 0.00 0.00 39.63 2.57
477 484 7.751732 TCGGAAATACTTGTCATCAAAATGAG 58.248 34.615 0.00 0.00 42.53 2.90
478 485 6.968904 CGGAAATACTTGTCATCAAAATGAGG 59.031 38.462 0.00 0.00 42.53 3.86
479 486 7.260603 GGAAATACTTGTCATCAAAATGAGGG 58.739 38.462 0.00 0.00 42.53 4.30
480 487 7.122650 GGAAATACTTGTCATCAAAATGAGGGA 59.877 37.037 0.00 0.00 42.53 4.20
481 488 7.636150 AATACTTGTCATCAAAATGAGGGAG 57.364 36.000 0.00 0.00 42.53 4.30
482 489 4.990526 ACTTGTCATCAAAATGAGGGAGT 58.009 39.130 0.00 0.00 42.53 3.85
497 504 9.449719 AAATGAGGGAGTACAAGTTACTATTTG 57.550 33.333 0.00 0.00 0.00 2.32
500 507 6.775708 AGGGAGTACAAGTTACTATTTGCAA 58.224 36.000 0.00 0.00 0.00 4.08
502 509 8.545472 AGGGAGTACAAGTTACTATTTGCAATA 58.455 33.333 0.00 0.00 0.00 1.90
573 584 5.535043 TCCTTCGCGAAACTTTTTATACC 57.465 39.130 23.54 0.00 0.00 2.73
648 668 9.982291 TTTCGTAATTACTTCTGTTTGCATATC 57.018 29.630 13.56 0.00 0.00 1.63
649 669 8.710835 TCGTAATTACTTCTGTTTGCATATCA 57.289 30.769 13.56 0.00 0.00 2.15
650 670 9.325198 TCGTAATTACTTCTGTTTGCATATCAT 57.675 29.630 13.56 0.00 0.00 2.45
651 671 9.586150 CGTAATTACTTCTGTTTGCATATCATC 57.414 33.333 13.56 0.00 0.00 2.92
654 674 7.558161 TTACTTCTGTTTGCATATCATCAGG 57.442 36.000 0.00 0.00 32.09 3.86
655 675 5.503927 ACTTCTGTTTGCATATCATCAGGT 58.496 37.500 0.00 0.00 32.09 4.00
656 676 5.948162 ACTTCTGTTTGCATATCATCAGGTT 59.052 36.000 0.00 0.00 32.09 3.50
657 677 6.435277 ACTTCTGTTTGCATATCATCAGGTTT 59.565 34.615 0.00 0.00 32.09 3.27
658 678 6.839124 TCTGTTTGCATATCATCAGGTTTT 57.161 33.333 0.00 0.00 32.09 2.43
659 679 6.623486 TCTGTTTGCATATCATCAGGTTTTG 58.377 36.000 0.00 0.00 32.09 2.44
660 680 6.209192 TCTGTTTGCATATCATCAGGTTTTGT 59.791 34.615 0.00 0.00 32.09 2.83
661 681 6.757237 TGTTTGCATATCATCAGGTTTTGTT 58.243 32.000 0.00 0.00 0.00 2.83
662 682 7.215789 TGTTTGCATATCATCAGGTTTTGTTT 58.784 30.769 0.00 0.00 0.00 2.83
663 683 7.714377 TGTTTGCATATCATCAGGTTTTGTTTT 59.286 29.630 0.00 0.00 0.00 2.43
664 684 7.655236 TTGCATATCATCAGGTTTTGTTTTG 57.345 32.000 0.00 0.00 0.00 2.44
665 685 6.990798 TGCATATCATCAGGTTTTGTTTTGA 58.009 32.000 0.00 0.00 0.00 2.69
666 686 7.092079 TGCATATCATCAGGTTTTGTTTTGAG 58.908 34.615 0.00 0.00 0.00 3.02
667 687 7.039853 TGCATATCATCAGGTTTTGTTTTGAGA 60.040 33.333 0.00 0.00 0.00 3.27
668 688 7.814107 GCATATCATCAGGTTTTGTTTTGAGAA 59.186 33.333 0.00 0.00 0.00 2.87
669 689 9.695526 CATATCATCAGGTTTTGTTTTGAGAAA 57.304 29.630 0.00 0.00 0.00 2.52
672 692 9.617523 ATCATCAGGTTTTGTTTTGAGAAATTT 57.382 25.926 0.00 0.00 0.00 1.82
673 693 9.447157 TCATCAGGTTTTGTTTTGAGAAATTTT 57.553 25.926 0.00 0.00 0.00 1.82
676 696 8.020244 TCAGGTTTTGTTTTGAGAAATTTTTGC 58.980 29.630 0.00 0.00 0.00 3.68
677 697 7.806960 CAGGTTTTGTTTTGAGAAATTTTTGCA 59.193 29.630 0.00 0.00 0.00 4.08
678 698 8.522003 AGGTTTTGTTTTGAGAAATTTTTGCAT 58.478 25.926 0.00 0.00 0.00 3.96
679 699 9.780413 GGTTTTGTTTTGAGAAATTTTTGCATA 57.220 25.926 0.00 0.00 0.00 3.14
796 825 2.706890 TGAGGAAACGAACATTAGGCC 58.293 47.619 0.00 0.00 0.00 5.19
881 922 1.227734 CCCAACACCCGAGACGTTT 60.228 57.895 0.00 0.00 0.00 3.60
883 924 1.226030 CCAACACCCGAGACGTTTCC 61.226 60.000 0.00 0.00 0.00 3.13
884 925 0.531090 CAACACCCGAGACGTTTCCA 60.531 55.000 0.00 0.00 0.00 3.53
885 926 0.178533 AACACCCGAGACGTTTCCAA 59.821 50.000 0.00 0.00 0.00 3.53
886 927 0.178533 ACACCCGAGACGTTTCCAAA 59.821 50.000 0.00 0.00 0.00 3.28
887 928 1.202722 ACACCCGAGACGTTTCCAAAT 60.203 47.619 0.00 0.00 0.00 2.32
923 994 0.482446 AACAATGCAGAGGAACCCCA 59.518 50.000 0.00 0.00 33.88 4.96
927 998 2.568509 CAATGCAGAGGAACCCCAAAAT 59.431 45.455 0.00 0.00 33.88 1.82
957 1039 0.899019 GAGAAGAGAAGGCGAGGGTT 59.101 55.000 0.00 0.00 0.00 4.11
971 1055 0.421904 AGGGTTGATCTAGGGTGGGT 59.578 55.000 0.00 0.00 0.00 4.51
977 1061 4.010349 GTTGATCTAGGGTGGGTTTTCTG 58.990 47.826 0.00 0.00 0.00 3.02
983 1067 0.178961 GGGTGGGTTTTCTGGCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
1049 1133 2.967362 TGCTTACGTCGATTTGATGGT 58.033 42.857 0.00 0.00 37.96 3.55
1055 1139 0.034477 GTCGATTTGATGGTGGGGGT 60.034 55.000 0.00 0.00 0.00 4.95
1056 1140 0.034574 TCGATTTGATGGTGGGGGTG 60.035 55.000 0.00 0.00 0.00 4.61
1058 1142 1.615651 CGATTTGATGGTGGGGGTGAA 60.616 52.381 0.00 0.00 0.00 3.18
1060 1144 0.114168 TTTGATGGTGGGGGTGAAGG 59.886 55.000 0.00 0.00 0.00 3.46
1061 1145 0.774096 TTGATGGTGGGGGTGAAGGA 60.774 55.000 0.00 0.00 0.00 3.36
1062 1146 1.303282 GATGGTGGGGGTGAAGGAC 59.697 63.158 0.00 0.00 0.00 3.85
1063 1147 2.211468 GATGGTGGGGGTGAAGGACC 62.211 65.000 0.00 0.00 45.28 4.46
1073 1157 2.122768 GGTGAAGGACCATGAGGAGAT 58.877 52.381 0.00 0.00 45.34 2.75
1088 1172 3.570540 AGGAGATGATGATGAAGGACGA 58.429 45.455 0.00 0.00 0.00 4.20
1089 1173 3.320541 AGGAGATGATGATGAAGGACGAC 59.679 47.826 0.00 0.00 0.00 4.34
1110 1194 2.501610 GCCGCGGAGAGAAGGAAT 59.498 61.111 33.48 0.00 0.00 3.01
1112 1196 0.104304 GCCGCGGAGAGAAGGAATAA 59.896 55.000 33.48 0.00 0.00 1.40
1125 1209 0.837940 GGAATAAAGGTCTCGCCCCT 59.162 55.000 0.00 0.00 38.26 4.79
1128 1212 3.494573 GGAATAAAGGTCTCGCCCCTAAG 60.495 52.174 0.00 0.00 38.26 2.18
1181 1265 1.544825 TTGGAGTGGGCGAGGAAGAG 61.545 60.000 0.00 0.00 0.00 2.85
1220 1304 4.864334 GGTCGGGGGCAGCATCAG 62.864 72.222 0.00 0.00 0.00 2.90
1232 1316 2.105128 CATCAGGCCCGAGACGAC 59.895 66.667 0.00 0.00 0.00 4.34
1234 1318 3.989838 ATCAGGCCCGAGACGACGA 62.990 63.158 0.00 0.00 35.09 4.20
1258 1342 1.971357 AGGAAGAGAAGGCGAAAGTCA 59.029 47.619 0.00 0.00 38.99 3.41
1273 1357 5.163844 GCGAAAGTCAATCTAGGGTTTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
1344 1428 4.925646 TGCATCGATTTGATATTCGAGGAG 59.074 41.667 12.04 2.95 45.89 3.69
1350 1434 5.105554 CGATTTGATATTCGAGGAGAGGGAT 60.106 44.000 0.00 0.00 37.55 3.85
1357 1441 1.112315 CGAGGAGAGGGATGAGGTGG 61.112 65.000 0.00 0.00 0.00 4.61
1361 1445 2.022240 GAGAGGGATGAGGTGGCGAC 62.022 65.000 0.00 0.00 0.00 5.19
1362 1446 3.083997 AGGGATGAGGTGGCGACC 61.084 66.667 10.38 10.38 43.52 4.79
1367 1973 2.876368 GATGAGGTGGCGACCAAGGG 62.876 65.000 20.91 0.00 45.98 3.95
1371 1977 4.778143 GTGGCGACCAAGGGCGAT 62.778 66.667 20.33 0.00 34.18 4.58
1374 1980 2.435938 GCGACCAAGGGCGATGAA 60.436 61.111 20.33 0.00 0.00 2.57
1425 2031 2.746277 CTCGCCCCCAAAACGGAG 60.746 66.667 0.00 0.00 36.56 4.63
1429 2035 1.977009 GCCCCCAAAACGGAGAAGG 60.977 63.158 0.00 0.00 36.56 3.46
1430 2036 1.977009 CCCCCAAAACGGAGAAGGC 60.977 63.158 0.00 0.00 36.56 4.35
1431 2037 2.332654 CCCCAAAACGGAGAAGGCG 61.333 63.158 0.00 0.00 36.56 5.52
1432 2038 2.332654 CCCAAAACGGAGAAGGCGG 61.333 63.158 0.00 0.00 36.56 6.13
1433 2039 2.561373 CAAAACGGAGAAGGCGGC 59.439 61.111 0.00 0.00 0.00 6.53
1453 2059 3.520862 CGGCGGCGGGAGTAAGTA 61.521 66.667 25.36 0.00 0.00 2.24
1500 2107 2.420687 GGCGAGGAAGATGTTGGAAGAT 60.421 50.000 0.00 0.00 0.00 2.40
1626 2233 3.859414 GAGCGGAGGGAGCAGCAT 61.859 66.667 0.00 0.00 37.01 3.79
1629 2236 2.827423 CGGAGGGAGCAGCATGAT 59.173 61.111 0.00 0.00 39.69 2.45
1873 2492 2.245806 CCCTCCCCCTCTTGATCAATTT 59.754 50.000 8.96 0.00 0.00 1.82
2140 2762 3.018423 AGGGATAACTGCCAAACCATC 57.982 47.619 0.00 0.00 34.74 3.51
2176 2802 4.441415 CGTATTCTCCTCGCTGAATGTTAC 59.559 45.833 0.00 0.00 35.01 2.50
2485 3115 3.190327 TGCAATGGACGGTGAACATAAAG 59.810 43.478 0.00 0.00 0.00 1.85
2492 3122 2.552315 ACGGTGAACATAAAGTGCCTTG 59.448 45.455 0.00 0.00 0.00 3.61
2510 3141 4.804108 CCTTGCATTGTCGGACAAATTTA 58.196 39.130 25.64 11.06 41.96 1.40
2544 3175 2.496070 TCGAGTTTATGGGAGTCTGTGG 59.504 50.000 0.00 0.00 0.00 4.17
2549 3180 6.183360 CGAGTTTATGGGAGTCTGTGGTATTA 60.183 42.308 0.00 0.00 0.00 0.98
2605 3236 5.881923 AAATAGCCATGGCAAATCTGATT 57.118 34.783 37.18 19.77 44.88 2.57
2630 3263 6.264292 TGCTACTTGGAACTTGCTTTATGAAA 59.736 34.615 0.00 0.00 0.00 2.69
2631 3264 7.145323 GCTACTTGGAACTTGCTTTATGAAAA 58.855 34.615 0.00 0.00 0.00 2.29
2665 3298 9.197694 CTAGTAGCTATACACCAAATGATCAAC 57.802 37.037 0.00 0.00 34.07 3.18
2671 3304 2.833338 ACACCAAATGATCAACCCATGG 59.167 45.455 4.14 4.14 0.00 3.66
2702 3335 1.358103 AGTCTGCTAGTGTAGGTGGGA 59.642 52.381 0.00 0.00 0.00 4.37
2850 3488 9.961265 ATAATCAATGTGCATTTCTAATGTGAG 57.039 29.630 0.00 0.00 0.00 3.51
2855 8091 6.182039 TGTGCATTTCTAATGTGAGTTAGC 57.818 37.500 0.00 0.00 32.85 3.09
2917 8153 2.076863 CCTGCAACTTTTACCCTCTCG 58.923 52.381 0.00 0.00 0.00 4.04
2923 8159 4.560108 GCAACTTTTACCCTCTCGTGACTA 60.560 45.833 0.00 0.00 0.00 2.59
3164 8494 7.432059 TGTTTTGATTGTGATGTTCAATGCTA 58.568 30.769 0.00 0.00 35.94 3.49
3167 8497 4.701171 TGATTGTGATGTTCAATGCTAGCA 59.299 37.500 21.85 21.85 35.94 3.49
3173 8503 5.296283 GTGATGTTCAATGCTAGCATCTTCT 59.704 40.000 29.67 12.23 37.44 2.85
3188 8522 6.157211 AGCATCTTCTTTTTGCTTCAATCTG 58.843 36.000 0.00 0.00 43.94 2.90
3365 8794 6.313905 CGCACCAGTCTTACTCAAGATAAATT 59.686 38.462 0.00 0.00 42.66 1.82
3425 8854 1.133482 TGTCTGAGACTGACAGGTCCA 60.133 52.381 14.42 0.45 37.40 4.02
3521 8950 8.637099 TCTGAGGATAGAGATTTGAGTTATGTG 58.363 37.037 0.00 0.00 0.00 3.21
3546 8975 5.007626 GCTGTTTATTATCGTGATTCTGGCA 59.992 40.000 0.00 0.00 0.00 4.92
3571 9000 3.144762 GCGAATCGTACGCGTTTAAAAA 58.855 40.909 20.78 0.00 46.05 1.94
3603 9032 0.239347 CAAGCTTAGCACAGTGGCAC 59.761 55.000 10.29 10.29 35.83 5.01
3660 9089 2.439507 ACCATCAGTGTGAGAGTGGTTT 59.560 45.455 0.00 0.00 36.62 3.27
3665 9094 0.663153 GTGTGAGAGTGGTTTGTGGC 59.337 55.000 0.00 0.00 0.00 5.01
3723 9152 4.944372 CCGCCAGTATCGACGCCC 62.944 72.222 0.00 0.00 0.00 6.13
3755 9184 1.014044 TGCTTGCGTTCGGAGATGAC 61.014 55.000 0.00 0.00 35.04 3.06
4114 9742 7.154435 TGGTTAGATGTGTCTTGACTAGTAC 57.846 40.000 0.00 0.00 35.87 2.73
4172 9800 6.096423 TGACTATGTAATGTAGTGTCCTGGTC 59.904 42.308 0.00 0.00 32.77 4.02
4312 9942 3.877508 ACTATGTAATCTTTTGGAGGCGC 59.122 43.478 0.00 0.00 0.00 6.53
4427 10068 4.789075 GGCGCTGCTGCATGGTTG 62.789 66.667 16.29 0.00 39.64 3.77
4446 10087 3.958860 GGCAGGTGGAGCTGTGGT 61.959 66.667 7.62 0.00 0.00 4.16
4456 10097 3.056328 GCTGTGGTTCGGAAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
4458 10099 3.530910 CTGTGGTTCGGAAGGGCGT 62.531 63.158 0.00 0.00 0.00 5.68
4488 10129 1.090052 GCCTGTATCGGGAGCACAAC 61.090 60.000 0.00 0.00 29.82 3.32
4504 10145 0.603707 CAACGAAGAGCTCCAAGGCA 60.604 55.000 10.93 0.00 34.17 4.75
4520 10162 1.596603 GGCATTTGGCTTTGCTTTGT 58.403 45.000 6.79 0.00 44.01 2.83
4533 10175 3.717400 TGCTTTGTTGGCGTCAAAATA 57.283 38.095 2.85 0.00 34.96 1.40
4542 10184 3.897239 TGGCGTCAAAATATTCATCCCT 58.103 40.909 0.00 0.00 0.00 4.20
4544 10186 3.882888 GGCGTCAAAATATTCATCCCTCA 59.117 43.478 0.00 0.00 0.00 3.86
4579 10221 1.228367 CTCCTGCTGGGTGCTGTTT 60.228 57.895 10.07 0.00 43.37 2.83
4604 10246 1.180456 TGTGGAGCATGCCAGTTTGG 61.180 55.000 15.66 0.00 38.95 3.28
4614 10256 1.391157 GCCAGTTTGGGACAGTGCAA 61.391 55.000 0.00 0.00 42.39 4.08
4615 10257 1.110442 CCAGTTTGGGACAGTGCAAA 58.890 50.000 0.00 0.00 42.39 3.68
4643 10320 1.610554 ATGGCTGCTGGGTTGAATGC 61.611 55.000 0.00 0.00 0.00 3.56
4651 10328 2.095059 GCTGGGTTGAATGCTTGTGTAG 60.095 50.000 0.00 0.00 0.00 2.74
4681 10358 3.859414 GCTCAGGGAGCGGCTGAT 61.859 66.667 7.50 0.00 45.85 2.90
4682 10359 2.108566 CTCAGGGAGCGGCTGATG 59.891 66.667 7.50 3.08 0.00 3.07
4683 10360 2.685017 TCAGGGAGCGGCTGATGT 60.685 61.111 7.50 0.00 0.00 3.06
4684 10361 2.513204 CAGGGAGCGGCTGATGTG 60.513 66.667 7.50 0.00 0.00 3.21
4685 10362 2.685017 AGGGAGCGGCTGATGTGA 60.685 61.111 7.50 0.00 0.00 3.58
4686 10363 2.268920 GGGAGCGGCTGATGTGAA 59.731 61.111 7.50 0.00 0.00 3.18
4687 10364 1.153086 GGGAGCGGCTGATGTGAAT 60.153 57.895 7.50 0.00 0.00 2.57
4688 10365 1.442526 GGGAGCGGCTGATGTGAATG 61.443 60.000 7.50 0.00 0.00 2.67
4689 10366 0.462581 GGAGCGGCTGATGTGAATGA 60.463 55.000 7.50 0.00 0.00 2.57
4690 10367 0.935898 GAGCGGCTGATGTGAATGAG 59.064 55.000 7.50 0.00 0.00 2.90
4691 10368 0.463295 AGCGGCTGATGTGAATGAGG 60.463 55.000 0.00 0.00 0.00 3.86
4692 10369 2.020131 CGGCTGATGTGAATGAGGC 58.980 57.895 0.00 0.00 0.00 4.70
4693 10370 0.463295 CGGCTGATGTGAATGAGGCT 60.463 55.000 0.00 0.00 0.00 4.58
4694 10371 1.022735 GGCTGATGTGAATGAGGCTG 58.977 55.000 0.00 0.00 0.00 4.85
4695 10372 0.381089 GCTGATGTGAATGAGGCTGC 59.619 55.000 0.00 0.00 0.00 5.25
4696 10373 1.746470 CTGATGTGAATGAGGCTGCA 58.254 50.000 0.50 0.00 0.00 4.41
4712 10390 1.293179 GCACAAATGAAGGTGGGGC 59.707 57.895 0.00 0.00 35.58 5.80
4731 10409 1.870055 CTGATGCAGTTGTGGCCACC 61.870 60.000 32.62 18.42 0.00 4.61
4738 10416 0.958822 AGTTGTGGCCACCGAAATTC 59.041 50.000 32.62 14.17 0.00 2.17
4741 10419 0.535328 TGTGGCCACCGAAATTCGAA 60.535 50.000 32.62 7.31 43.74 3.71
4948 10635 4.379918 GCCACTTGGAGAGCAAATAAGAAC 60.380 45.833 0.00 0.00 37.39 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.807165 CTGACACCCTCGCATGACG 60.807 63.158 0.00 0.00 45.62 4.35
8 9 0.320771 AACTGACACCCTCGCATGAC 60.321 55.000 0.00 0.00 0.00 3.06
9 10 0.037326 GAACTGACACCCTCGCATGA 60.037 55.000 0.00 0.00 0.00 3.07
10 11 0.036952 AGAACTGACACCCTCGCATG 60.037 55.000 0.00 0.00 0.00 4.06
11 12 0.036952 CAGAACTGACACCCTCGCAT 60.037 55.000 0.00 0.00 0.00 4.73
12 13 1.112916 TCAGAACTGACACCCTCGCA 61.113 55.000 0.00 0.00 34.14 5.10
13 14 0.033504 TTCAGAACTGACACCCTCGC 59.966 55.000 3.88 0.00 39.66 5.03
14 15 1.341531 ACTTCAGAACTGACACCCTCG 59.658 52.381 3.88 0.00 39.66 4.63
15 16 3.394719 GAACTTCAGAACTGACACCCTC 58.605 50.000 3.88 0.00 39.66 4.30
16 17 2.224066 CGAACTTCAGAACTGACACCCT 60.224 50.000 3.88 0.00 39.66 4.34
17 18 2.135933 CGAACTTCAGAACTGACACCC 58.864 52.381 3.88 0.00 39.66 4.61
18 19 3.093717 TCGAACTTCAGAACTGACACC 57.906 47.619 3.88 0.00 39.66 4.16
19 20 3.430218 CCATCGAACTTCAGAACTGACAC 59.570 47.826 3.88 0.00 39.66 3.67
20 21 3.653344 CCATCGAACTTCAGAACTGACA 58.347 45.455 3.88 0.00 39.66 3.58
21 22 2.413453 GCCATCGAACTTCAGAACTGAC 59.587 50.000 3.88 0.00 39.66 3.51
22 23 2.688507 GCCATCGAACTTCAGAACTGA 58.311 47.619 0.00 0.00 37.91 3.41
23 24 1.391485 CGCCATCGAACTTCAGAACTG 59.609 52.381 0.00 0.00 38.10 3.16
24 25 1.000955 ACGCCATCGAACTTCAGAACT 59.999 47.619 0.00 0.00 39.41 3.01
25 26 1.126846 CACGCCATCGAACTTCAGAAC 59.873 52.381 0.00 0.00 39.41 3.01
26 27 1.270094 ACACGCCATCGAACTTCAGAA 60.270 47.619 0.00 0.00 39.41 3.02
27 28 0.317160 ACACGCCATCGAACTTCAGA 59.683 50.000 0.00 0.00 39.41 3.27
28 29 0.716108 GACACGCCATCGAACTTCAG 59.284 55.000 0.00 0.00 39.41 3.02
29 30 0.669318 GGACACGCCATCGAACTTCA 60.669 55.000 0.00 0.00 39.41 3.02
30 31 1.683790 CGGACACGCCATCGAACTTC 61.684 60.000 0.00 0.00 39.41 3.01
31 32 1.736645 CGGACACGCCATCGAACTT 60.737 57.895 0.00 0.00 39.41 2.66
32 33 2.126071 CGGACACGCCATCGAACT 60.126 61.111 0.00 0.00 39.41 3.01
33 34 3.186047 CCGGACACGCCATCGAAC 61.186 66.667 0.00 0.00 39.22 3.95
34 35 4.444838 CCCGGACACGCCATCGAA 62.445 66.667 0.73 0.00 39.22 3.71
37 38 4.832608 GTCCCCGGACACGCCATC 62.833 72.222 0.73 0.00 44.02 3.51
45 46 2.750237 GGCAACATGTCCCCGGAC 60.750 66.667 0.73 6.95 44.77 4.79
46 47 4.041762 GGGCAACATGTCCCCGGA 62.042 66.667 16.28 0.00 35.72 5.14
51 52 2.750237 GACCGGGGCAACATGTCC 60.750 66.667 6.32 0.00 42.67 4.02
52 53 2.040544 CAGACCGGGGCAACATGTC 61.041 63.158 6.32 0.00 39.74 3.06
53 54 1.852157 ATCAGACCGGGGCAACATGT 61.852 55.000 6.32 0.00 39.74 3.21
54 55 0.680921 AATCAGACCGGGGCAACATG 60.681 55.000 6.32 0.00 39.74 3.21
55 56 0.394352 GAATCAGACCGGGGCAACAT 60.394 55.000 6.32 0.00 39.74 2.71
56 57 1.002624 GAATCAGACCGGGGCAACA 60.003 57.895 6.32 0.00 39.74 3.33
57 58 0.322546 AAGAATCAGACCGGGGCAAC 60.323 55.000 6.32 0.00 0.00 4.17
58 59 0.404040 AAAGAATCAGACCGGGGCAA 59.596 50.000 6.32 0.00 0.00 4.52
59 60 0.035439 GAAAGAATCAGACCGGGGCA 60.035 55.000 6.32 0.00 0.00 5.36
60 61 0.035439 TGAAAGAATCAGACCGGGGC 60.035 55.000 6.32 0.00 33.04 5.80
61 62 2.084546 GTTGAAAGAATCAGACCGGGG 58.915 52.381 6.32 0.00 39.77 5.73
62 63 1.732259 CGTTGAAAGAATCAGACCGGG 59.268 52.381 6.32 0.00 39.77 5.73
63 64 1.732259 CCGTTGAAAGAATCAGACCGG 59.268 52.381 0.00 0.00 39.77 5.28
64 65 1.128692 GCCGTTGAAAGAATCAGACCG 59.871 52.381 0.00 0.00 39.77 4.79
65 66 2.427506 AGCCGTTGAAAGAATCAGACC 58.572 47.619 0.00 0.00 39.77 3.85
66 67 4.034510 CCATAGCCGTTGAAAGAATCAGAC 59.965 45.833 0.00 0.00 39.77 3.51
67 68 4.191544 CCATAGCCGTTGAAAGAATCAGA 58.808 43.478 0.00 0.00 39.77 3.27
68 69 3.941483 ACCATAGCCGTTGAAAGAATCAG 59.059 43.478 0.00 0.00 39.77 2.90
69 70 3.950397 ACCATAGCCGTTGAAAGAATCA 58.050 40.909 0.00 0.00 35.85 2.57
70 71 4.965119 AACCATAGCCGTTGAAAGAATC 57.035 40.909 0.00 0.00 0.00 2.52
71 72 5.469479 CAAAACCATAGCCGTTGAAAGAAT 58.531 37.500 0.00 0.00 0.00 2.40
72 73 4.794655 GCAAAACCATAGCCGTTGAAAGAA 60.795 41.667 0.00 0.00 0.00 2.52
73 74 3.305064 GCAAAACCATAGCCGTTGAAAGA 60.305 43.478 0.00 0.00 0.00 2.52
74 75 2.986479 GCAAAACCATAGCCGTTGAAAG 59.014 45.455 0.00 0.00 0.00 2.62
75 76 2.625790 AGCAAAACCATAGCCGTTGAAA 59.374 40.909 0.00 0.00 0.00 2.69
76 77 2.235016 AGCAAAACCATAGCCGTTGAA 58.765 42.857 0.00 0.00 0.00 2.69
77 78 1.904287 AGCAAAACCATAGCCGTTGA 58.096 45.000 0.00 0.00 0.00 3.18
78 79 2.723124 AAGCAAAACCATAGCCGTTG 57.277 45.000 0.00 0.00 0.00 4.10
79 80 3.389221 CAAAAGCAAAACCATAGCCGTT 58.611 40.909 0.00 0.00 0.00 4.44
80 81 2.288763 CCAAAAGCAAAACCATAGCCGT 60.289 45.455 0.00 0.00 0.00 5.68
81 82 2.336667 CCAAAAGCAAAACCATAGCCG 58.663 47.619 0.00 0.00 0.00 5.52
82 83 2.076100 GCCAAAAGCAAAACCATAGCC 58.924 47.619 0.00 0.00 42.97 3.93
94 95 4.051237 CTCCAAAGTAGTTTGCCAAAAGC 58.949 43.478 16.26 0.00 41.64 3.51
95 96 4.099419 ACCTCCAAAGTAGTTTGCCAAAAG 59.901 41.667 16.26 8.40 41.64 2.27
96 97 4.027437 ACCTCCAAAGTAGTTTGCCAAAA 58.973 39.130 16.26 0.40 41.64 2.44
97 98 3.634910 GACCTCCAAAGTAGTTTGCCAAA 59.365 43.478 16.26 0.00 41.64 3.28
98 99 3.219281 GACCTCCAAAGTAGTTTGCCAA 58.781 45.455 16.26 4.63 41.64 4.52
99 100 2.488347 GGACCTCCAAAGTAGTTTGCCA 60.488 50.000 16.26 5.38 41.64 4.92
100 101 2.160205 GGACCTCCAAAGTAGTTTGCC 58.840 52.381 16.26 8.74 41.64 4.52
101 102 1.804748 CGGACCTCCAAAGTAGTTTGC 59.195 52.381 16.26 3.76 41.64 3.68
102 103 3.121738 ACGGACCTCCAAAGTAGTTTG 57.878 47.619 14.97 14.97 42.49 2.93
103 104 4.961438 TTACGGACCTCCAAAGTAGTTT 57.039 40.909 0.00 0.00 35.14 2.66
104 105 4.801914 GCTTTACGGACCTCCAAAGTAGTT 60.802 45.833 9.66 0.00 33.78 2.24
105 106 3.306571 GCTTTACGGACCTCCAAAGTAGT 60.307 47.826 9.66 0.00 33.78 2.73
106 107 3.056035 AGCTTTACGGACCTCCAAAGTAG 60.056 47.826 9.66 0.00 33.78 2.57
107 108 2.901839 AGCTTTACGGACCTCCAAAGTA 59.098 45.455 9.66 0.00 33.78 2.24
108 109 1.697982 AGCTTTACGGACCTCCAAAGT 59.302 47.619 9.66 0.00 33.78 2.66
109 110 2.076863 CAGCTTTACGGACCTCCAAAG 58.923 52.381 0.00 5.42 34.15 2.77
110 111 1.880646 GCAGCTTTACGGACCTCCAAA 60.881 52.381 0.00 0.00 35.14 3.28
111 112 0.321298 GCAGCTTTACGGACCTCCAA 60.321 55.000 0.00 0.00 35.14 3.53
112 113 1.192146 AGCAGCTTTACGGACCTCCA 61.192 55.000 0.00 0.00 35.14 3.86
113 114 0.741221 CAGCAGCTTTACGGACCTCC 60.741 60.000 0.00 0.00 0.00 4.30
114 115 0.246635 TCAGCAGCTTTACGGACCTC 59.753 55.000 0.00 0.00 0.00 3.85
115 116 0.905357 ATCAGCAGCTTTACGGACCT 59.095 50.000 0.00 0.00 0.00 3.85
116 117 1.291132 GATCAGCAGCTTTACGGACC 58.709 55.000 0.00 0.00 0.00 4.46
117 118 1.929836 CTGATCAGCAGCTTTACGGAC 59.070 52.381 10.38 0.00 37.90 4.79
118 119 2.299993 CTGATCAGCAGCTTTACGGA 57.700 50.000 10.38 0.00 37.90 4.69
130 131 1.664017 CGGCTCCATCGCTGATCAG 60.664 63.158 18.84 18.84 38.57 2.90
131 132 2.418777 CGGCTCCATCGCTGATCA 59.581 61.111 0.00 0.00 38.57 2.92
150 151 0.456995 CCTCTTCGTCCAAGCTCGAC 60.457 60.000 4.21 4.21 35.82 4.20
151 152 0.894184 ACCTCTTCGTCCAAGCTCGA 60.894 55.000 0.00 0.00 31.26 4.04
152 153 0.734253 CACCTCTTCGTCCAAGCTCG 60.734 60.000 0.00 0.00 31.26 5.03
153 154 0.603569 TCACCTCTTCGTCCAAGCTC 59.396 55.000 0.00 0.00 31.26 4.09
154 155 1.205893 GATCACCTCTTCGTCCAAGCT 59.794 52.381 0.00 0.00 31.26 3.74
155 156 1.205893 AGATCACCTCTTCGTCCAAGC 59.794 52.381 0.00 0.00 31.26 4.01
156 157 2.232452 ACAGATCACCTCTTCGTCCAAG 59.768 50.000 0.00 0.00 29.16 3.61
157 158 2.231478 GACAGATCACCTCTTCGTCCAA 59.769 50.000 0.00 0.00 29.16 3.53
158 159 1.819288 GACAGATCACCTCTTCGTCCA 59.181 52.381 0.00 0.00 29.16 4.02
159 160 2.096248 AGACAGATCACCTCTTCGTCC 58.904 52.381 0.00 0.00 30.66 4.79
160 161 3.859411 AAGACAGATCACCTCTTCGTC 57.141 47.619 0.00 0.00 30.56 4.20
161 162 4.608948 AAAAGACAGATCACCTCTTCGT 57.391 40.909 0.00 0.00 29.16 3.85
162 163 6.256757 GGATAAAAAGACAGATCACCTCTTCG 59.743 42.308 0.00 0.00 29.16 3.79
163 164 7.334858 AGGATAAAAAGACAGATCACCTCTTC 58.665 38.462 0.00 0.00 29.16 2.87
164 165 7.264294 AGGATAAAAAGACAGATCACCTCTT 57.736 36.000 0.00 0.00 29.16 2.85
165 166 6.882768 AGGATAAAAAGACAGATCACCTCT 57.117 37.500 0.00 0.00 33.14 3.69
166 167 7.148171 CCAAAGGATAAAAAGACAGATCACCTC 60.148 40.741 0.00 0.00 0.00 3.85
167 168 6.660949 CCAAAGGATAAAAAGACAGATCACCT 59.339 38.462 0.00 0.00 0.00 4.00
168 169 6.434340 ACCAAAGGATAAAAAGACAGATCACC 59.566 38.462 0.00 0.00 0.00 4.02
169 170 7.308435 CACCAAAGGATAAAAAGACAGATCAC 58.692 38.462 0.00 0.00 0.00 3.06
170 171 6.434028 CCACCAAAGGATAAAAAGACAGATCA 59.566 38.462 0.00 0.00 0.00 2.92
171 172 6.625960 GCCACCAAAGGATAAAAAGACAGATC 60.626 42.308 0.00 0.00 0.00 2.75
172 173 5.185828 GCCACCAAAGGATAAAAAGACAGAT 59.814 40.000 0.00 0.00 0.00 2.90
173 174 4.522789 GCCACCAAAGGATAAAAAGACAGA 59.477 41.667 0.00 0.00 0.00 3.41
174 175 4.321974 GGCCACCAAAGGATAAAAAGACAG 60.322 45.833 0.00 0.00 0.00 3.51
175 176 3.576550 GGCCACCAAAGGATAAAAAGACA 59.423 43.478 0.00 0.00 0.00 3.41
176 177 3.366985 CGGCCACCAAAGGATAAAAAGAC 60.367 47.826 2.24 0.00 0.00 3.01
177 178 2.823154 CGGCCACCAAAGGATAAAAAGA 59.177 45.455 2.24 0.00 0.00 2.52
178 179 2.673893 GCGGCCACCAAAGGATAAAAAG 60.674 50.000 2.24 0.00 0.00 2.27
179 180 1.273886 GCGGCCACCAAAGGATAAAAA 59.726 47.619 2.24 0.00 0.00 1.94
180 181 0.892063 GCGGCCACCAAAGGATAAAA 59.108 50.000 2.24 0.00 0.00 1.52
181 182 0.039035 AGCGGCCACCAAAGGATAAA 59.961 50.000 2.24 0.00 0.00 1.40
182 183 0.039035 AAGCGGCCACCAAAGGATAA 59.961 50.000 2.24 0.00 0.00 1.75
183 184 0.393808 GAAGCGGCCACCAAAGGATA 60.394 55.000 2.24 0.00 0.00 2.59
184 185 1.678970 GAAGCGGCCACCAAAGGAT 60.679 57.895 2.24 0.00 0.00 3.24
185 186 2.282180 GAAGCGGCCACCAAAGGA 60.282 61.111 2.24 0.00 0.00 3.36
186 187 3.737172 CGAAGCGGCCACCAAAGG 61.737 66.667 2.24 0.00 0.00 3.11
187 188 3.737172 CCGAAGCGGCCACCAAAG 61.737 66.667 2.24 0.00 41.17 2.77
197 198 2.355363 TTCGACACCACCGAAGCG 60.355 61.111 0.00 0.00 40.56 4.68
200 201 0.464870 TTTCCTTCGACACCACCGAA 59.535 50.000 0.00 0.00 42.79 4.30
201 202 0.032952 CTTTCCTTCGACACCACCGA 59.967 55.000 0.00 0.00 0.00 4.69
202 203 0.949105 CCTTTCCTTCGACACCACCG 60.949 60.000 0.00 0.00 0.00 4.94
203 204 0.605589 CCCTTTCCTTCGACACCACC 60.606 60.000 0.00 0.00 0.00 4.61
204 205 0.395312 TCCCTTTCCTTCGACACCAC 59.605 55.000 0.00 0.00 0.00 4.16
205 206 0.395312 GTCCCTTTCCTTCGACACCA 59.605 55.000 0.00 0.00 0.00 4.17
206 207 0.395312 TGTCCCTTTCCTTCGACACC 59.605 55.000 0.00 0.00 30.52 4.16
207 208 1.608283 CCTGTCCCTTTCCTTCGACAC 60.608 57.143 0.00 0.00 32.12 3.67
208 209 0.685097 CCTGTCCCTTTCCTTCGACA 59.315 55.000 0.00 0.00 34.26 4.35
209 210 0.673956 GCCTGTCCCTTTCCTTCGAC 60.674 60.000 0.00 0.00 0.00 4.20
210 211 1.677552 GCCTGTCCCTTTCCTTCGA 59.322 57.895 0.00 0.00 0.00 3.71
211 212 1.741770 CGCCTGTCCCTTTCCTTCG 60.742 63.158 0.00 0.00 0.00 3.79
212 213 2.041115 GCGCCTGTCCCTTTCCTTC 61.041 63.158 0.00 0.00 0.00 3.46
213 214 2.034221 GCGCCTGTCCCTTTCCTT 59.966 61.111 0.00 0.00 0.00 3.36
214 215 2.930562 AGCGCCTGTCCCTTTCCT 60.931 61.111 2.29 0.00 0.00 3.36
215 216 2.747855 CAGCGCCTGTCCCTTTCC 60.748 66.667 2.29 0.00 0.00 3.13
216 217 2.180159 TACCAGCGCCTGTCCCTTTC 62.180 60.000 2.29 0.00 0.00 2.62
217 218 1.562672 ATACCAGCGCCTGTCCCTTT 61.563 55.000 2.29 0.00 0.00 3.11
218 219 1.562672 AATACCAGCGCCTGTCCCTT 61.563 55.000 2.29 0.00 0.00 3.95
219 220 1.562672 AAATACCAGCGCCTGTCCCT 61.563 55.000 2.29 0.00 0.00 4.20
220 221 1.077716 AAATACCAGCGCCTGTCCC 60.078 57.895 2.29 0.00 0.00 4.46
221 222 0.392461 TGAAATACCAGCGCCTGTCC 60.392 55.000 2.29 0.00 0.00 4.02
222 223 1.668419 ATGAAATACCAGCGCCTGTC 58.332 50.000 2.29 0.00 0.00 3.51
223 224 2.485479 CCTATGAAATACCAGCGCCTGT 60.485 50.000 2.29 3.78 0.00 4.00
224 225 2.146342 CCTATGAAATACCAGCGCCTG 58.854 52.381 2.29 1.18 0.00 4.85
225 226 2.047061 TCCTATGAAATACCAGCGCCT 58.953 47.619 2.29 0.00 0.00 5.52
226 227 2.543777 TCCTATGAAATACCAGCGCC 57.456 50.000 2.29 0.00 0.00 6.53
227 228 5.438761 AAAATCCTATGAAATACCAGCGC 57.561 39.130 0.00 0.00 0.00 5.92
228 229 6.002062 GGAAAATCCTATGAAATACCAGCG 57.998 41.667 0.00 0.00 32.53 5.18
243 244 8.286191 ACATGACTGAAAAGATAGGAAAATCC 57.714 34.615 0.00 0.00 36.58 3.01
246 247 9.177608 CCATACATGACTGAAAAGATAGGAAAA 57.822 33.333 0.00 0.00 0.00 2.29
247 248 8.328758 ACCATACATGACTGAAAAGATAGGAAA 58.671 33.333 0.00 0.00 0.00 3.13
248 249 7.861629 ACCATACATGACTGAAAAGATAGGAA 58.138 34.615 0.00 0.00 0.00 3.36
249 250 7.437713 ACCATACATGACTGAAAAGATAGGA 57.562 36.000 0.00 0.00 0.00 2.94
250 251 6.422100 CGACCATACATGACTGAAAAGATAGG 59.578 42.308 0.00 0.00 0.00 2.57
251 252 6.422100 CCGACCATACATGACTGAAAAGATAG 59.578 42.308 0.00 0.00 0.00 2.08
252 253 6.127168 ACCGACCATACATGACTGAAAAGATA 60.127 38.462 0.00 0.00 0.00 1.98
253 254 5.118990 CCGACCATACATGACTGAAAAGAT 58.881 41.667 0.00 0.00 0.00 2.40
254 255 4.020573 ACCGACCATACATGACTGAAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
255 256 4.093408 CACCGACCATACATGACTGAAAAG 59.907 45.833 0.00 0.00 0.00 2.27
256 257 4.000325 CACCGACCATACATGACTGAAAA 59.000 43.478 0.00 0.00 0.00 2.29
257 258 3.595173 CACCGACCATACATGACTGAAA 58.405 45.455 0.00 0.00 0.00 2.69
258 259 2.676750 GCACCGACCATACATGACTGAA 60.677 50.000 0.00 0.00 0.00 3.02
259 260 1.134818 GCACCGACCATACATGACTGA 60.135 52.381 0.00 0.00 0.00 3.41
260 261 1.134699 AGCACCGACCATACATGACTG 60.135 52.381 0.00 0.00 0.00 3.51
261 262 1.195115 AGCACCGACCATACATGACT 58.805 50.000 0.00 0.00 0.00 3.41
262 263 2.024176 AAGCACCGACCATACATGAC 57.976 50.000 0.00 0.00 0.00 3.06
263 264 2.480587 CGTAAGCACCGACCATACATGA 60.481 50.000 0.00 0.00 0.00 3.07
264 265 1.858458 CGTAAGCACCGACCATACATG 59.142 52.381 0.00 0.00 0.00 3.21
265 266 1.479323 ACGTAAGCACCGACCATACAT 59.521 47.619 0.00 0.00 45.62 2.29
266 267 0.889994 ACGTAAGCACCGACCATACA 59.110 50.000 0.00 0.00 45.62 2.29
267 268 1.274596 CACGTAAGCACCGACCATAC 58.725 55.000 0.00 0.00 45.62 2.39
268 269 0.458889 GCACGTAAGCACCGACCATA 60.459 55.000 0.00 0.00 45.62 2.74
269 270 1.740296 GCACGTAAGCACCGACCAT 60.740 57.895 0.00 0.00 45.62 3.55
270 271 2.356553 GCACGTAAGCACCGACCA 60.357 61.111 0.00 0.00 45.62 4.02
271 272 3.116531 GGCACGTAAGCACCGACC 61.117 66.667 0.00 0.00 45.62 4.79
272 273 1.666872 AAGGCACGTAAGCACCGAC 60.667 57.895 0.00 0.00 45.62 4.79
273 274 1.666553 CAAGGCACGTAAGCACCGA 60.667 57.895 0.00 0.00 45.62 4.69
274 275 0.668096 TACAAGGCACGTAAGCACCG 60.668 55.000 0.00 0.00 45.62 4.94
275 276 1.196127 GTTACAAGGCACGTAAGCACC 59.804 52.381 0.00 0.00 45.62 5.01
276 277 2.140717 AGTTACAAGGCACGTAAGCAC 58.859 47.619 0.00 0.00 45.62 4.40
277 278 2.536761 AGTTACAAGGCACGTAAGCA 57.463 45.000 0.00 0.00 45.62 3.91
278 279 2.803956 TCAAGTTACAAGGCACGTAAGC 59.196 45.455 0.00 0.00 45.62 3.09
280 281 4.890088 AGATCAAGTTACAAGGCACGTAA 58.110 39.130 0.00 0.00 0.00 3.18
281 282 4.530710 AGATCAAGTTACAAGGCACGTA 57.469 40.909 0.00 0.00 0.00 3.57
282 283 3.402628 AGATCAAGTTACAAGGCACGT 57.597 42.857 0.00 0.00 0.00 4.49
283 284 4.749245 AAAGATCAAGTTACAAGGCACG 57.251 40.909 0.00 0.00 0.00 5.34
284 285 8.045176 AGAATAAAGATCAAGTTACAAGGCAC 57.955 34.615 0.00 0.00 0.00 5.01
285 286 9.905713 ATAGAATAAAGATCAAGTTACAAGGCA 57.094 29.630 0.00 0.00 0.00 4.75
310 311 9.151471 GCATGGTAATACGTGTCTCATTTATAT 57.849 33.333 0.00 0.00 0.00 0.86
311 312 8.145122 TGCATGGTAATACGTGTCTCATTTATA 58.855 33.333 0.00 0.00 0.00 0.98
312 313 6.989759 TGCATGGTAATACGTGTCTCATTTAT 59.010 34.615 0.00 0.00 0.00 1.40
313 314 6.342111 TGCATGGTAATACGTGTCTCATTTA 58.658 36.000 0.00 0.00 0.00 1.40
314 315 5.182487 TGCATGGTAATACGTGTCTCATTT 58.818 37.500 0.00 0.00 0.00 2.32
315 316 4.765273 TGCATGGTAATACGTGTCTCATT 58.235 39.130 0.00 0.00 0.00 2.57
316 317 4.400529 TGCATGGTAATACGTGTCTCAT 57.599 40.909 0.00 0.00 0.00 2.90
317 318 3.878160 TGCATGGTAATACGTGTCTCA 57.122 42.857 0.00 0.00 0.00 3.27
318 319 5.539582 TTTTGCATGGTAATACGTGTCTC 57.460 39.130 0.00 0.00 0.00 3.36
319 320 5.950758 TTTTTGCATGGTAATACGTGTCT 57.049 34.783 0.00 0.00 0.00 3.41
341 342 9.384764 GAGCACAATAATAGAAGGTCTAGTTTT 57.615 33.333 0.00 0.00 31.67 2.43
432 439 3.995705 CGAACGGAGGGAGTACTCTATAG 59.004 52.174 21.88 12.23 37.63 1.31
437 444 0.393537 TCCGAACGGAGGGAGTACTC 60.394 60.000 14.87 14.87 39.76 2.59
438 445 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
439 446 0.890683 TTTCCGAACGGAGGGAGTAC 59.109 55.000 15.34 0.00 46.06 2.73
440 447 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
441 448 1.479730 GTATTTCCGAACGGAGGGAGT 59.520 52.381 15.34 1.96 46.06 3.85
442 449 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
443 450 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
444 451 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
445 452 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
446 453 3.581755 TGACAAGTATTTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
447 454 3.663995 TGACAAGTATTTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
448 455 3.930229 TGATGACAAGTATTTCCGAACGG 59.070 43.478 6.94 6.94 0.00 4.44
449 456 5.524511 TTGATGACAAGTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
450 457 8.020819 TCATTTTGATGACAAGTATTTCCGAAC 58.979 33.333 0.00 0.00 37.32 3.95
451 458 8.105097 TCATTTTGATGACAAGTATTTCCGAA 57.895 30.769 0.00 0.00 37.32 4.30
452 459 7.148255 CCTCATTTTGATGACAAGTATTTCCGA 60.148 37.037 0.00 0.00 37.32 4.55
453 460 6.968904 CCTCATTTTGATGACAAGTATTTCCG 59.031 38.462 0.00 0.00 37.32 4.30
454 461 7.122650 TCCCTCATTTTGATGACAAGTATTTCC 59.877 37.037 0.00 0.00 37.32 3.13
455 462 8.055279 TCCCTCATTTTGATGACAAGTATTTC 57.945 34.615 0.00 0.00 37.32 2.17
456 463 7.671398 ACTCCCTCATTTTGATGACAAGTATTT 59.329 33.333 0.00 0.00 37.32 1.40
457 464 7.177878 ACTCCCTCATTTTGATGACAAGTATT 58.822 34.615 0.00 0.00 37.32 1.89
458 465 6.725364 ACTCCCTCATTTTGATGACAAGTAT 58.275 36.000 0.00 0.00 37.32 2.12
459 466 6.126863 ACTCCCTCATTTTGATGACAAGTA 57.873 37.500 0.00 0.00 37.32 2.24
460 467 4.990526 ACTCCCTCATTTTGATGACAAGT 58.009 39.130 0.00 0.00 37.32 3.16
461 468 5.939883 TGTACTCCCTCATTTTGATGACAAG 59.060 40.000 0.00 0.00 37.32 3.16
462 469 5.875224 TGTACTCCCTCATTTTGATGACAA 58.125 37.500 0.00 0.00 0.00 3.18
463 470 5.497464 TGTACTCCCTCATTTTGATGACA 57.503 39.130 0.00 0.00 0.00 3.58
464 471 5.940470 ACTTGTACTCCCTCATTTTGATGAC 59.060 40.000 0.00 0.00 0.00 3.06
465 472 6.126863 ACTTGTACTCCCTCATTTTGATGA 57.873 37.500 0.00 0.00 0.00 2.92
466 473 6.824305 AACTTGTACTCCCTCATTTTGATG 57.176 37.500 0.00 0.00 0.00 3.07
467 474 7.690256 AGTAACTTGTACTCCCTCATTTTGAT 58.310 34.615 0.00 0.00 0.00 2.57
468 475 7.074653 AGTAACTTGTACTCCCTCATTTTGA 57.925 36.000 0.00 0.00 0.00 2.69
469 476 9.449719 AATAGTAACTTGTACTCCCTCATTTTG 57.550 33.333 0.00 0.00 0.00 2.44
471 478 9.449719 CAAATAGTAACTTGTACTCCCTCATTT 57.550 33.333 0.00 0.00 0.00 2.32
472 479 7.553044 GCAAATAGTAACTTGTACTCCCTCATT 59.447 37.037 0.00 0.00 0.00 2.57
473 480 7.048512 GCAAATAGTAACTTGTACTCCCTCAT 58.951 38.462 0.00 0.00 0.00 2.90
474 481 6.014070 TGCAAATAGTAACTTGTACTCCCTCA 60.014 38.462 0.00 0.00 0.00 3.86
475 482 6.403878 TGCAAATAGTAACTTGTACTCCCTC 58.596 40.000 0.00 0.00 0.00 4.30
476 483 6.368779 TGCAAATAGTAACTTGTACTCCCT 57.631 37.500 0.00 0.00 0.00 4.20
477 484 7.625828 ATTGCAAATAGTAACTTGTACTCCC 57.374 36.000 1.71 0.00 0.00 4.30
522 529 1.136891 CGTAGACATCACATCAGGGCA 59.863 52.381 0.00 0.00 0.00 5.36
573 584 9.630098 AAATAAACTTGACATTCTATTGTGCTG 57.370 29.630 0.00 0.00 0.00 4.41
650 670 8.020244 GCAAAAATTTCTCAAAACAAAACCTGA 58.980 29.630 0.00 0.00 0.00 3.86
651 671 7.806960 TGCAAAAATTTCTCAAAACAAAACCTG 59.193 29.630 0.00 0.00 0.00 4.00
652 672 7.880105 TGCAAAAATTTCTCAAAACAAAACCT 58.120 26.923 0.00 0.00 0.00 3.50
653 673 8.686397 ATGCAAAAATTTCTCAAAACAAAACC 57.314 26.923 0.00 0.00 0.00 3.27
661 681 9.373603 CCTGATGATATGCAAAAATTTCTCAAA 57.626 29.630 0.00 0.00 0.00 2.69
662 682 8.533657 ACCTGATGATATGCAAAAATTTCTCAA 58.466 29.630 0.00 0.00 0.00 3.02
663 683 7.977293 CACCTGATGATATGCAAAAATTTCTCA 59.023 33.333 0.00 0.00 0.00 3.27
664 684 7.977853 ACACCTGATGATATGCAAAAATTTCTC 59.022 33.333 0.00 0.00 0.00 2.87
665 685 7.844009 ACACCTGATGATATGCAAAAATTTCT 58.156 30.769 0.00 0.00 0.00 2.52
666 686 9.754382 ATACACCTGATGATATGCAAAAATTTC 57.246 29.630 0.00 0.00 0.00 2.17
772 801 5.508320 GGCCTAATGTTCGTTTCCTCAAAAA 60.508 40.000 0.00 0.00 0.00 1.94
773 802 4.022676 GGCCTAATGTTCGTTTCCTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
774 803 3.504520 GGCCTAATGTTCGTTTCCTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
775 804 3.078837 GGCCTAATGTTCGTTTCCTCAA 58.921 45.455 0.00 0.00 0.00 3.02
776 805 2.304761 AGGCCTAATGTTCGTTTCCTCA 59.695 45.455 1.29 0.00 0.00 3.86
777 806 2.987232 AGGCCTAATGTTCGTTTCCTC 58.013 47.619 1.29 0.00 0.00 3.71
778 807 3.009143 AGAAGGCCTAATGTTCGTTTCCT 59.991 43.478 5.16 0.00 0.00 3.36
779 808 3.344515 AGAAGGCCTAATGTTCGTTTCC 58.655 45.455 5.16 0.00 0.00 3.13
780 809 5.048991 TCAAAGAAGGCCTAATGTTCGTTTC 60.049 40.000 5.16 0.00 0.00 2.78
781 810 4.825085 TCAAAGAAGGCCTAATGTTCGTTT 59.175 37.500 5.16 0.00 0.00 3.60
782 811 4.394729 TCAAAGAAGGCCTAATGTTCGTT 58.605 39.130 5.16 0.35 0.00 3.85
796 825 9.333750 CCTAGTGGGAAACTTTGCTCAAAGAAG 62.334 44.444 24.24 4.20 42.88 2.85
881 922 2.555123 GCAGAGTTGCCGATTTGGA 58.445 52.632 0.00 0.00 44.74 3.53
923 994 1.359130 CTTCTCTGGGTGGGGGATTTT 59.641 52.381 0.00 0.00 0.00 1.82
927 998 1.081092 CTCTTCTCTGGGTGGGGGA 59.919 63.158 0.00 0.00 0.00 4.81
957 1039 2.576191 CCAGAAAACCCACCCTAGATCA 59.424 50.000 0.00 0.00 0.00 2.92
971 1055 3.834813 TCTGCTAGAGAAGAGCCAGAAAA 59.165 43.478 0.00 0.00 39.30 2.29
983 1067 2.237643 CCATAGCTGCTCTGCTAGAGA 58.762 52.381 4.91 0.00 45.07 3.10
996 1080 1.021390 GCAGTGTGAACGCCATAGCT 61.021 55.000 0.00 0.00 36.60 3.32
1032 1116 2.623535 CCCACCATCAAATCGACGTAA 58.376 47.619 0.00 0.00 0.00 3.18
1049 1133 1.151699 TCATGGTCCTTCACCCCCA 60.152 57.895 0.00 0.00 46.18 4.96
1055 1139 3.120468 TCATCTCCTCATGGTCCTTCA 57.880 47.619 0.00 0.00 34.23 3.02
1056 1140 3.645212 TCATCATCTCCTCATGGTCCTTC 59.355 47.826 0.00 0.00 34.23 3.46
1058 1142 3.341318 TCATCATCTCCTCATGGTCCT 57.659 47.619 0.00 0.00 34.23 3.85
1060 1144 4.886496 TCATCATCATCTCCTCATGGTC 57.114 45.455 0.00 0.00 34.23 4.02
1061 1145 4.041815 CCTTCATCATCATCTCCTCATGGT 59.958 45.833 0.00 0.00 34.23 3.55
1062 1146 4.286291 TCCTTCATCATCATCTCCTCATGG 59.714 45.833 0.00 0.00 0.00 3.66
1063 1147 5.239351 GTCCTTCATCATCATCTCCTCATG 58.761 45.833 0.00 0.00 0.00 3.07
1064 1148 4.021280 CGTCCTTCATCATCATCTCCTCAT 60.021 45.833 0.00 0.00 0.00 2.90
1065 1149 3.320256 CGTCCTTCATCATCATCTCCTCA 59.680 47.826 0.00 0.00 0.00 3.86
1073 1157 1.405463 CCTCGTCGTCCTTCATCATCA 59.595 52.381 0.00 0.00 0.00 3.07
1089 1173 4.560856 CTTCTCTCCGCGGCCTCG 62.561 72.222 23.51 8.51 39.81 4.63
1110 1194 2.537633 TCTTAGGGGCGAGACCTTTA 57.462 50.000 0.00 0.00 39.54 1.85
1112 1196 1.196012 CTTCTTAGGGGCGAGACCTT 58.804 55.000 0.00 0.00 39.54 3.50
1125 1209 3.258372 TGGCGCTCTTCTTCTTCTTCTTA 59.742 43.478 7.64 0.00 0.00 2.10
1128 1212 2.086054 TGGCGCTCTTCTTCTTCTTC 57.914 50.000 7.64 0.00 0.00 2.87
1181 1265 0.962855 GGCCCTCTCTGCTTCCAAAC 60.963 60.000 0.00 0.00 0.00 2.93
1225 1309 0.879765 TCTTCCTTGGTCGTCGTCTC 59.120 55.000 0.00 0.00 0.00 3.36
1232 1316 0.737715 CGCCTTCTCTTCCTTGGTCG 60.738 60.000 0.00 0.00 0.00 4.79
1234 1318 1.056660 TTCGCCTTCTCTTCCTTGGT 58.943 50.000 0.00 0.00 0.00 3.67
1258 1342 3.329929 AACGCGAGAAAACCCTAGATT 57.670 42.857 15.93 0.00 0.00 2.40
1273 1357 1.739338 ATCCCCTCTCTGCTAACGCG 61.739 60.000 3.53 3.53 39.65 6.01
1344 1428 2.501610 GTCGCCACCTCATCCCTC 59.498 66.667 0.00 0.00 0.00 4.30
1350 1434 3.636231 CCCTTGGTCGCCACCTCA 61.636 66.667 1.09 0.00 44.17 3.86
1357 1441 2.435938 TTCATCGCCCTTGGTCGC 60.436 61.111 0.00 0.00 0.00 5.19
1361 1445 3.204827 CCGCTTCATCGCCCTTGG 61.205 66.667 0.00 0.00 0.00 3.61
1362 1446 3.880846 GCCGCTTCATCGCCCTTG 61.881 66.667 0.00 0.00 0.00 3.61
1368 1974 4.207281 TCCTCCGCCGCTTCATCG 62.207 66.667 0.00 0.00 0.00 3.84
1388 1994 2.021457 GACCTCTCTTCCTTCTCTCCG 58.979 57.143 0.00 0.00 0.00 4.63
1436 2042 3.520862 TACTTACTCCCGCCGCCG 61.521 66.667 0.00 0.00 0.00 6.46
1439 2045 0.248377 CTTCGTACTTACTCCCGCCG 60.248 60.000 0.00 0.00 0.00 6.46
1444 2050 2.479219 CCGCCTTCTTCGTACTTACTCC 60.479 54.545 0.00 0.00 0.00 3.85
1452 2058 4.807039 GCCGCCGCCTTCTTCGTA 62.807 66.667 0.00 0.00 0.00 3.43
1500 2107 3.744238 TTTCCGTCATTGACACTCTCA 57.256 42.857 16.61 0.00 32.09 3.27
1626 2233 1.302431 CCACTTGGTCACGGCATCA 60.302 57.895 0.00 0.00 0.00 3.07
1629 2236 1.003839 GATCCACTTGGTCACGGCA 60.004 57.895 0.00 0.00 36.34 5.69
1873 2492 6.098838 TGCTTAGCAGAGATTAATCCAAGAGA 59.901 38.462 11.92 0.00 33.32 3.10
2140 2762 3.858238 GGAGAATACGAACCTTCTTGTCG 59.142 47.826 0.00 0.00 31.99 4.35
2176 2802 4.099881 AGGCAACAATAATATGGCACCAAG 59.900 41.667 0.00 0.00 41.64 3.61
2453 3083 3.630312 ACCGTCCATTGCATTTGGTATAC 59.370 43.478 14.08 0.00 35.64 1.47
2485 3115 1.210155 GTCCGACAATGCAAGGCAC 59.790 57.895 0.00 0.00 43.04 5.01
2492 3122 9.891828 TGATATATTAAATTTGTCCGACAATGC 57.108 29.630 14.64 0.00 38.00 3.56
2510 3141 8.647796 TCCCATAAACTCGAGTTGTGATATATT 58.352 33.333 30.33 14.22 38.44 1.28
2531 3162 5.836898 TCGTAATAATACCACAGACTCCCAT 59.163 40.000 0.00 0.00 0.00 4.00
2532 3163 5.202765 TCGTAATAATACCACAGACTCCCA 58.797 41.667 0.00 0.00 0.00 4.37
2544 3175 8.984764 TGTATGCATGGAACTTCGTAATAATAC 58.015 33.333 10.16 0.00 0.00 1.89
2549 3180 5.294306 CAGTGTATGCATGGAACTTCGTAAT 59.706 40.000 10.16 0.00 0.00 1.89
2605 3236 5.312895 TCATAAAGCAAGTTCCAAGTAGCA 58.687 37.500 0.00 0.00 0.00 3.49
2671 3304 6.642707 ACACTAGCAGACTTATCCATACTC 57.357 41.667 0.00 0.00 0.00 2.59
2793 3426 5.416083 TGAACGTGGATATAACAAGACTGG 58.584 41.667 0.00 0.00 0.00 4.00
2850 3488 4.756502 ACCTGGAAGAAATCTACGCTAAC 58.243 43.478 0.00 0.00 34.07 2.34
2855 8091 5.047235 CCCCTATACCTGGAAGAAATCTACG 60.047 48.000 0.00 0.00 34.07 3.51
2917 8153 7.362142 GGACAATTCTCAAAGGGAAATAGTCAC 60.362 40.741 9.84 0.00 0.00 3.67
2923 8159 5.015813 AGGGACAATTCTCAAAGGGAAAT 57.984 39.130 0.00 0.00 0.00 2.17
3167 8497 6.092955 TGCAGATTGAAGCAAAAAGAAGAT 57.907 33.333 0.00 0.00 37.90 2.40
3188 8522 9.934190 CCCTTGCATTTTAAACAAATAATATGC 57.066 29.630 12.50 12.50 44.01 3.14
3216 8563 7.359514 GGTCAGCAAGCATTTCAAATCTTTAAC 60.360 37.037 0.00 0.00 0.00 2.01
3425 8854 2.411504 AACAACAACAGCGCGGGTT 61.412 52.632 13.26 13.46 0.00 4.11
3519 8948 6.422223 CAGAATCACGATAATAAACAGCCAC 58.578 40.000 0.00 0.00 0.00 5.01
3521 8950 5.560953 GCCAGAATCACGATAATAAACAGCC 60.561 44.000 0.00 0.00 0.00 4.85
3571 9000 2.486472 AAGCTTGCTAGTGCTGACAT 57.514 45.000 0.00 0.00 39.71 3.06
3603 9032 6.704289 ATGAACAATATCACCCAACATCAG 57.296 37.500 0.00 0.00 30.82 2.90
3665 9094 0.391927 TACAACCTTCCGGCCATTCG 60.392 55.000 2.24 0.00 0.00 3.34
3723 9152 3.374745 ACGCAAGCAACTCAATTTTCTG 58.625 40.909 0.00 0.00 45.62 3.02
4114 9742 4.433615 CTTGCCCACACTACATAGTACTG 58.566 47.826 5.39 0.00 34.13 2.74
4284 9914 7.917505 GCCTCCAAAAGATTACATAGTCAAATG 59.082 37.037 0.00 0.00 0.00 2.32
4302 9932 4.257654 TTCACCCGCGCCTCCAAA 62.258 61.111 0.00 0.00 0.00 3.28
4312 9942 0.037590 TTTGTGATCCCCTTCACCCG 59.962 55.000 2.43 0.00 44.37 5.28
4427 10068 4.729918 CACAGCTCCACCTGCCCC 62.730 72.222 0.00 0.00 36.29 5.80
4440 10081 2.742372 CGCCCTTCCGAACCACAG 60.742 66.667 0.00 0.00 0.00 3.66
4446 10087 2.356553 CAACGACGCCCTTCCGAA 60.357 61.111 0.00 0.00 0.00 4.30
4456 10097 2.702751 TACAGGCACACCCAACGACG 62.703 60.000 0.00 0.00 36.11 5.12
4458 10099 0.036765 GATACAGGCACACCCAACGA 60.037 55.000 0.00 0.00 36.11 3.85
4488 10129 1.131883 CAAATGCCTTGGAGCTCTTCG 59.868 52.381 14.64 1.75 0.00 3.79
4504 10145 1.948834 GCCAACAAAGCAAAGCCAAAT 59.051 42.857 0.00 0.00 0.00 2.32
4520 10162 4.277476 AGGGATGAATATTTTGACGCCAA 58.723 39.130 0.00 0.00 0.00 4.52
4533 10175 1.890552 ACAGAGGCTGAGGGATGAAT 58.109 50.000 0.00 0.00 35.18 2.57
4542 10184 0.250901 GGCAAGGAAACAGAGGCTGA 60.251 55.000 0.00 0.00 35.18 4.26
4544 10186 0.037447 GAGGCAAGGAAACAGAGGCT 59.963 55.000 0.00 0.00 36.51 4.58
4579 10221 2.352422 GCATGCTCCACACCCAGA 59.648 61.111 11.37 0.00 0.00 3.86
4604 10246 0.244721 GCCCTGATTTTGCACTGTCC 59.755 55.000 0.00 0.00 0.00 4.02
4643 10320 3.188460 GCCAATACACACACCTACACAAG 59.812 47.826 0.00 0.00 0.00 3.16
4651 10328 1.453155 CCTGAGCCAATACACACACC 58.547 55.000 0.00 0.00 0.00 4.16
4680 10357 1.913778 TTGTGCAGCCTCATTCACAT 58.086 45.000 0.00 0.00 38.94 3.21
4681 10358 1.689984 TTTGTGCAGCCTCATTCACA 58.310 45.000 0.00 0.00 37.63 3.58
4682 10359 2.229543 TCATTTGTGCAGCCTCATTCAC 59.770 45.455 0.00 0.00 0.00 3.18
4683 10360 2.516906 TCATTTGTGCAGCCTCATTCA 58.483 42.857 0.00 0.00 0.00 2.57
4684 10361 3.508762 CTTCATTTGTGCAGCCTCATTC 58.491 45.455 0.00 0.00 0.00 2.67
4685 10362 2.232941 CCTTCATTTGTGCAGCCTCATT 59.767 45.455 0.00 0.00 0.00 2.57
4686 10363 1.822990 CCTTCATTTGTGCAGCCTCAT 59.177 47.619 0.00 0.00 0.00 2.90
4687 10364 1.250328 CCTTCATTTGTGCAGCCTCA 58.750 50.000 0.00 0.00 0.00 3.86
4688 10365 1.068055 CACCTTCATTTGTGCAGCCTC 60.068 52.381 0.00 0.00 0.00 4.70
4689 10366 0.963962 CACCTTCATTTGTGCAGCCT 59.036 50.000 0.00 0.00 0.00 4.58
4690 10367 0.037975 CCACCTTCATTTGTGCAGCC 60.038 55.000 0.00 0.00 0.00 4.85
4691 10368 0.037975 CCCACCTTCATTTGTGCAGC 60.038 55.000 0.00 0.00 0.00 5.25
4692 10369 0.604578 CCCCACCTTCATTTGTGCAG 59.395 55.000 0.00 0.00 0.00 4.41
4693 10370 1.470996 GCCCCACCTTCATTTGTGCA 61.471 55.000 0.00 0.00 0.00 4.57
4694 10371 1.187567 AGCCCCACCTTCATTTGTGC 61.188 55.000 0.00 0.00 0.00 4.57
4695 10372 0.604578 CAGCCCCACCTTCATTTGTG 59.395 55.000 0.00 0.00 0.00 3.33
4696 10373 0.482446 TCAGCCCCACCTTCATTTGT 59.518 50.000 0.00 0.00 0.00 2.83
4712 10390 1.582968 GTGGCCACAACTGCATCAG 59.417 57.895 31.23 0.00 37.52 2.90
4731 10409 5.927030 TCTTCCATGTCTTTTCGAATTTCG 58.073 37.500 12.54 12.54 42.10 3.46
4738 10416 4.214119 TCAAGCTTCTTCCATGTCTTTTCG 59.786 41.667 0.00 0.00 0.00 3.46
4741 10419 3.505293 GCTCAAGCTTCTTCCATGTCTTT 59.495 43.478 0.00 0.00 38.21 2.52
4921 10608 0.250901 TTGCTCTCCAAGTGGCCTTC 60.251 55.000 3.32 0.00 34.44 3.46
4948 10635 3.487574 CGTTCTTCAGATAAGCTAAGCGG 59.512 47.826 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.