Multiple sequence alignment - TraesCS1B01G061000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G061000 chr1B 100.000 1334 0 0 973 2306 45249233 45250566 0.000000e+00 2464.0
1 TraesCS1B01G061000 chr1B 100.000 635 0 0 1 635 45248261 45248895 0.000000e+00 1173.0
2 TraesCS1B01G061000 chr1B 86.698 421 27 18 9 427 45478271 45478664 7.560000e-120 440.0
3 TraesCS1B01G061000 chr1B 86.600 403 26 17 9 410 45535421 45535796 9.850000e-114 420.0
4 TraesCS1B01G061000 chr1B 86.600 403 26 17 9 410 45620684 45621059 9.850000e-114 420.0
5 TraesCS1B01G061000 chr1B 90.698 301 22 4 1295 1590 45479507 45479806 1.660000e-106 396.0
6 TraesCS1B01G061000 chr1B 95.556 225 8 2 2082 2306 553637149 553637371 2.180000e-95 359.0
7 TraesCS1B01G061000 chr1B 91.469 211 11 2 432 635 45595767 45595977 1.350000e-72 283.0
8 TraesCS1B01G061000 chr1B 91.057 123 10 1 1469 1590 45540745 45540867 5.100000e-37 165.0
9 TraesCS1B01G061000 chr1B 86.022 93 4 3 2002 2086 45479806 45479897 8.770000e-15 91.6
10 TraesCS1B01G061000 chr1B 86.022 93 4 3 2002 2086 45540867 45540958 8.770000e-15 91.6
11 TraesCS1B01G061000 chr1D 93.974 780 41 6 974 1752 28165370 28166144 0.000000e+00 1175.0
12 TraesCS1B01G061000 chr1D 93.237 621 33 4 1 613 28164408 28165027 0.000000e+00 905.0
13 TraesCS1B01G061000 chr1D 88.312 308 17 10 1787 2086 28166125 28166421 3.650000e-93 351.0
14 TraesCS1B01G061000 chr3B 96.035 227 6 2 2080 2306 775442444 775442221 1.300000e-97 366.0
15 TraesCS1B01G061000 chr7B 95.982 224 8 1 2083 2306 706159544 706159322 1.680000e-96 363.0
16 TraesCS1B01G061000 chr2B 95.575 226 6 4 2081 2306 49527235 49527014 2.180000e-95 359.0
17 TraesCS1B01G061000 chr2B 95.133 226 10 1 2081 2306 37951816 37951592 2.820000e-94 355.0
18 TraesCS1B01G061000 chr2B 95.133 226 10 1 2081 2306 543165281 543165505 2.820000e-94 355.0
19 TraesCS1B01G061000 chr6B 95.133 226 8 3 2082 2306 405002190 405002413 1.010000e-93 353.0
20 TraesCS1B01G061000 chr5B 95.111 225 10 1 2082 2306 590556901 590556678 1.010000e-93 353.0
21 TraesCS1B01G061000 chr4B 95.111 225 10 1 2082 2306 22881788 22882011 1.010000e-93 353.0
22 TraesCS1B01G061000 chrUn 100.000 38 0 0 2049 2086 400487679 400487642 1.140000e-08 71.3
23 TraesCS1B01G061000 chr6D 95.000 40 2 0 1747 1786 73778855 73778816 1.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G061000 chr1B 45248261 45250566 2305 False 1818.500000 2464 100.000 1 2306 2 chr1B.!!$F5 2305
1 TraesCS1B01G061000 chr1B 45478271 45479897 1626 False 309.200000 440 87.806 9 2086 3 chr1B.!!$F6 2077
2 TraesCS1B01G061000 chr1D 28164408 28166421 2013 False 810.333333 1175 91.841 1 2086 3 chr1D.!!$F1 2085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 257 3.205338 TGCATTGCATAGAACTACGCAT 58.795 40.909 7.38 0.0 34.09 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 2235 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.0 27.5 22.02 29.07 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.888878 CACAATCAATCATGGCTAGTAATTTAG 57.111 33.333 0.00 0.00 0.00 1.85
87 88 5.661056 TCTAGTGTACAACAGCTAGCATT 57.339 39.130 18.83 8.02 33.68 3.56
194 195 3.425892 GCAACAACTAGCAAGCTCAGATG 60.426 47.826 0.00 3.10 0.00 2.90
255 257 3.205338 TGCATTGCATAGAACTACGCAT 58.795 40.909 7.38 0.00 34.09 4.73
275 277 6.428771 ACGCATTTAAACCAGAACTAAGCTAA 59.571 34.615 0.00 0.00 0.00 3.09
276 278 6.961554 CGCATTTAAACCAGAACTAAGCTAAG 59.038 38.462 0.00 0.00 0.00 2.18
277 279 7.360946 CGCATTTAAACCAGAACTAAGCTAAGT 60.361 37.037 0.00 0.00 0.00 2.24
333 335 5.827568 AAGCTCACATAAAACAAATTGCG 57.172 34.783 0.00 0.00 0.00 4.85
335 337 3.987220 GCTCACATAAAACAAATTGCGGT 59.013 39.130 0.00 0.00 0.00 5.68
361 363 8.210265 TGACATCCACTGCATTATTATTAGTGA 58.790 33.333 0.00 0.00 40.80 3.41
477 481 5.071653 ACAAATTGGCAAAAGTCTACCCAAT 59.928 36.000 3.01 0.00 45.47 3.16
497 501 5.990996 CCAATTATGTCCATACAAAATGCCC 59.009 40.000 0.00 0.00 39.58 5.36
583 593 8.469200 CAAGATTAAAAATTCCCTAGCATGACA 58.531 33.333 0.00 0.00 0.00 3.58
613 623 4.620723 ACCACCCAATCTACATCAGAGTA 58.379 43.478 0.00 0.00 36.48 2.59
614 624 4.651503 ACCACCCAATCTACATCAGAGTAG 59.348 45.833 0.00 0.00 42.21 2.57
994 1004 4.132336 CACAGAGAGAGAGAGAGAGATGG 58.868 52.174 0.00 0.00 0.00 3.51
1019 1029 4.899239 GGAGGGCGCGGTGATCAG 62.899 72.222 8.83 0.00 0.00 2.90
1045 1055 1.625818 GGACTGTGGAGGTCAATGACT 59.374 52.381 13.53 0.00 35.61 3.41
1049 1059 3.392616 ACTGTGGAGGTCAATGACTTCTT 59.607 43.478 21.91 3.23 38.46 2.52
1095 1105 4.048470 GGGCACTCCAAGGGGACC 62.048 72.222 0.00 0.00 42.64 4.46
1110 1120 1.002773 GGGACCGTGTTGTTCCTACAT 59.997 52.381 0.00 0.00 33.44 2.29
1113 1123 0.802494 CCGTGTTGTTCCTACATGGC 59.198 55.000 0.00 0.00 43.54 4.40
1206 1216 0.537188 CTGACCTTCGTGGCTATGGT 59.463 55.000 0.00 0.00 40.22 3.55
1267 1277 1.611977 TCCATATCGTCGGTGACATCC 59.388 52.381 0.00 0.00 32.09 3.51
1287 1297 1.337071 CTCGCGCTTCTCAATACCCTA 59.663 52.381 5.56 0.00 0.00 3.53
1309 1319 2.760092 GGGCTTGCAAAGGTATGATTCA 59.240 45.455 0.00 0.00 46.35 2.57
1350 1360 0.109153 CCGGCCATTCTGATCCATCA 59.891 55.000 2.24 0.00 35.16 3.07
1433 1443 2.439507 ACTGAGTCAACTGAACCCATGT 59.560 45.455 0.00 0.00 0.00 3.21
1470 1481 5.907207 TCTCAACGATTAGAATCCTCCAAG 58.093 41.667 0.00 0.00 31.68 3.61
1481 1495 8.940397 TTAGAATCCTCCAAGAAATCTTTTGT 57.060 30.769 0.00 0.00 33.11 2.83
1585 1599 7.384387 ACCTAGTTACTTTTGTCGATCAAACTC 59.616 37.037 11.15 3.71 44.39 3.01
1590 1604 4.929808 ACTTTTGTCGATCAAACTCGCTAT 59.070 37.500 11.15 0.00 44.39 2.97
1615 1629 2.319136 AGTGTGGCAAACGTAGACAA 57.681 45.000 1.33 0.00 0.00 3.18
1629 1643 5.539048 ACGTAGACAAGCTAATCTTTGTGT 58.461 37.500 5.06 0.00 31.27 3.72
1632 1646 6.145534 CGTAGACAAGCTAATCTTTGTGTTGA 59.854 38.462 5.06 0.00 31.27 3.18
1653 1667 3.660865 ACGGTCCTTTTGCACTTAGTAG 58.339 45.455 0.00 0.00 0.00 2.57
1657 1671 5.119743 CGGTCCTTTTGCACTTAGTAGTAAC 59.880 44.000 0.00 0.00 31.96 2.50
1712 1726 9.970395 AAGAATTAATACATATCCGTTACGTCA 57.030 29.630 3.52 0.00 0.00 4.35
1718 1732 5.027206 ACATATCCGTTACGTCAGTATCG 57.973 43.478 3.52 3.11 42.49 2.92
1734 1748 5.470777 TCAGTATCGGTTTTGTTTTTCGGAT 59.529 36.000 0.00 0.00 0.00 4.18
1735 1749 6.649973 TCAGTATCGGTTTTGTTTTTCGGATA 59.350 34.615 0.00 0.00 0.00 2.59
1736 1750 6.959311 CAGTATCGGTTTTGTTTTTCGGATAG 59.041 38.462 0.00 0.00 0.00 2.08
1737 1751 5.952526 ATCGGTTTTGTTTTTCGGATAGT 57.047 34.783 0.00 0.00 0.00 2.12
1738 1752 5.098218 TCGGTTTTGTTTTTCGGATAGTG 57.902 39.130 0.00 0.00 0.00 2.74
1739 1753 4.023878 TCGGTTTTGTTTTTCGGATAGTGG 60.024 41.667 0.00 0.00 0.00 4.00
1740 1754 4.552355 GGTTTTGTTTTTCGGATAGTGGG 58.448 43.478 0.00 0.00 0.00 4.61
1741 1755 4.278919 GGTTTTGTTTTTCGGATAGTGGGA 59.721 41.667 0.00 0.00 0.00 4.37
1742 1756 5.221283 GGTTTTGTTTTTCGGATAGTGGGAA 60.221 40.000 0.00 0.00 0.00 3.97
1743 1757 6.274579 GTTTTGTTTTTCGGATAGTGGGAAA 58.725 36.000 0.00 0.00 0.00 3.13
1744 1758 5.699097 TTGTTTTTCGGATAGTGGGAAAG 57.301 39.130 0.00 0.00 31.94 2.62
1745 1759 4.721132 TGTTTTTCGGATAGTGGGAAAGT 58.279 39.130 0.00 0.00 31.94 2.66
1746 1760 5.134661 TGTTTTTCGGATAGTGGGAAAGTT 58.865 37.500 0.00 0.00 31.94 2.66
1747 1761 5.595133 TGTTTTTCGGATAGTGGGAAAGTTT 59.405 36.000 0.00 0.00 31.94 2.66
1748 1762 6.097129 TGTTTTTCGGATAGTGGGAAAGTTTT 59.903 34.615 0.00 0.00 31.94 2.43
1749 1763 6.718522 TTTTCGGATAGTGGGAAAGTTTTT 57.281 33.333 0.00 0.00 31.94 1.94
1772 1786 6.680874 TTTTTAGGCGAAACTGTAGAACAA 57.319 33.333 0.00 0.00 0.00 2.83
1773 1787 6.870971 TTTTAGGCGAAACTGTAGAACAAT 57.129 33.333 0.00 0.00 0.00 2.71
1774 1788 7.966246 TTTTAGGCGAAACTGTAGAACAATA 57.034 32.000 0.00 0.00 0.00 1.90
1775 1789 7.591006 TTTAGGCGAAACTGTAGAACAATAG 57.409 36.000 0.00 0.00 0.00 1.73
1776 1790 5.148651 AGGCGAAACTGTAGAACAATAGT 57.851 39.130 0.00 0.00 0.00 2.12
1777 1791 5.548406 AGGCGAAACTGTAGAACAATAGTT 58.452 37.500 0.00 0.00 41.64 2.24
1815 1829 6.745907 GTGGGAAAGTTCTTTTAATGATACGC 59.254 38.462 0.00 0.00 0.00 4.42
1824 1838 9.730420 GTTCTTTTAATGATACGCCATTTACAT 57.270 29.630 4.07 0.00 37.81 2.29
1834 1848 9.043079 TGATACGCCATTTACATTTACGATTTA 57.957 29.630 0.00 0.00 0.00 1.40
1867 1881 1.334869 GATAAAGATGCAAGTGGCCGG 59.665 52.381 0.00 0.00 43.89 6.13
1869 1883 1.526575 AAAGATGCAAGTGGCCGGTG 61.527 55.000 1.90 0.00 43.89 4.94
1939 1956 2.926778 AGGCTGGAGATCACTTATGC 57.073 50.000 0.00 0.00 0.00 3.14
1944 1961 4.054671 GCTGGAGATCACTTATGCTGTAC 58.945 47.826 0.00 0.00 0.00 2.90
1947 1964 6.641169 TGGAGATCACTTATGCTGTACTAG 57.359 41.667 0.00 0.00 0.00 2.57
1948 1965 6.129874 TGGAGATCACTTATGCTGTACTAGT 58.870 40.000 0.00 0.00 0.00 2.57
1950 1967 7.945109 TGGAGATCACTTATGCTGTACTAGTAT 59.055 37.037 5.75 0.00 35.74 2.12
1951 1968 8.240682 GGAGATCACTTATGCTGTACTAGTATG 58.759 40.741 5.75 3.87 33.49 2.39
1952 1969 8.926092 AGATCACTTATGCTGTACTAGTATGA 57.074 34.615 5.75 2.86 33.49 2.15
1953 1970 9.355916 AGATCACTTATGCTGTACTAGTATGAA 57.644 33.333 5.75 0.00 33.49 2.57
1954 1971 9.967346 GATCACTTATGCTGTACTAGTATGAAA 57.033 33.333 5.75 0.00 33.49 2.69
1955 1972 9.751542 ATCACTTATGCTGTACTAGTATGAAAC 57.248 33.333 5.75 0.00 33.49 2.78
1956 1973 8.967918 TCACTTATGCTGTACTAGTATGAAACT 58.032 33.333 5.75 0.00 42.62 2.66
1974 1991 7.429636 TGAAACTAGTATTAGTGTGCCAAAC 57.570 36.000 0.00 0.00 40.02 2.93
1984 2001 1.028130 TGTGCCAAACGATCAAAGCA 58.972 45.000 0.00 0.00 0.00 3.91
1986 2003 2.253603 GTGCCAAACGATCAAAGCATC 58.746 47.619 0.00 0.00 32.11 3.91
1989 2006 2.478539 GCCAAACGATCAAAGCATCCTC 60.479 50.000 0.00 0.00 0.00 3.71
1990 2007 3.012518 CCAAACGATCAAAGCATCCTCT 58.987 45.455 0.00 0.00 0.00 3.69
1991 2008 3.064545 CCAAACGATCAAAGCATCCTCTC 59.935 47.826 0.00 0.00 0.00 3.20
1992 2009 3.616956 AACGATCAAAGCATCCTCTCA 57.383 42.857 0.00 0.00 0.00 3.27
1993 2010 3.616956 ACGATCAAAGCATCCTCTCAA 57.383 42.857 0.00 0.00 0.00 3.02
1994 2011 3.942829 ACGATCAAAGCATCCTCTCAAA 58.057 40.909 0.00 0.00 0.00 2.69
1995 2012 4.326826 ACGATCAAAGCATCCTCTCAAAA 58.673 39.130 0.00 0.00 0.00 2.44
1996 2013 4.394300 ACGATCAAAGCATCCTCTCAAAAG 59.606 41.667 0.00 0.00 0.00 2.27
2031 2048 4.570772 TCAATGCCTTTGTATCGAACTAGC 59.429 41.667 0.00 0.00 36.65 3.42
2086 2110 4.758674 CCAATACATGTGATGAGCCTTAGG 59.241 45.833 9.11 0.00 0.00 2.69
2087 2111 4.630644 ATACATGTGATGAGCCTTAGGG 57.369 45.455 9.11 0.00 0.00 3.53
2123 2147 2.994699 CCCCCAGGACGCATACAA 59.005 61.111 0.00 0.00 33.47 2.41
2124 2148 1.301623 CCCCCAGGACGCATACAAA 59.698 57.895 0.00 0.00 33.47 2.83
2125 2149 0.106719 CCCCCAGGACGCATACAAAT 60.107 55.000 0.00 0.00 33.47 2.32
2126 2150 1.308998 CCCCAGGACGCATACAAATC 58.691 55.000 0.00 0.00 0.00 2.17
2127 2151 0.937304 CCCAGGACGCATACAAATCG 59.063 55.000 0.00 0.00 0.00 3.34
2128 2152 1.651987 CCAGGACGCATACAAATCGT 58.348 50.000 0.00 0.00 39.33 3.73
2133 2157 2.810650 GACGCATACAAATCGTCCTCT 58.189 47.619 2.96 0.00 44.62 3.69
2134 2158 2.535984 GACGCATACAAATCGTCCTCTG 59.464 50.000 2.96 0.00 44.62 3.35
2135 2159 1.860950 CGCATACAAATCGTCCTCTGG 59.139 52.381 0.00 0.00 0.00 3.86
2136 2160 2.213499 GCATACAAATCGTCCTCTGGG 58.787 52.381 0.00 0.00 0.00 4.45
2137 2161 2.838736 CATACAAATCGTCCTCTGGGG 58.161 52.381 0.00 0.00 0.00 4.96
2138 2162 1.200519 TACAAATCGTCCTCTGGGGG 58.799 55.000 0.00 0.00 35.33 5.40
2139 2163 1.452108 CAAATCGTCCTCTGGGGGC 60.452 63.158 0.00 0.00 36.08 5.80
2155 2179 4.570663 GCGAGCCGGCGATACACT 62.571 66.667 23.20 0.00 0.00 3.55
2156 2180 2.353607 CGAGCCGGCGATACACTC 60.354 66.667 23.20 10.39 0.00 3.51
2164 2188 2.655364 CGATACACTCGGCGCTGG 60.655 66.667 17.88 9.81 43.82 4.85
2165 2189 2.279517 GATACACTCGGCGCTGGG 60.280 66.667 16.41 16.41 0.00 4.45
2166 2190 3.792053 GATACACTCGGCGCTGGGG 62.792 68.421 22.56 13.19 0.00 4.96
2175 2199 4.038080 GCGCTGGGGACGGTTTTG 62.038 66.667 0.00 0.00 39.64 2.44
2176 2200 4.038080 CGCTGGGGACGGTTTTGC 62.038 66.667 0.00 0.00 39.64 3.68
2177 2201 4.038080 GCTGGGGACGGTTTTGCG 62.038 66.667 0.00 0.00 39.64 4.85
2178 2202 4.038080 CTGGGGACGGTTTTGCGC 62.038 66.667 0.00 0.00 0.00 6.09
2182 2206 4.038080 GGACGGTTTTGCGCCCAG 62.038 66.667 4.18 0.00 0.00 4.45
2183 2207 3.284449 GACGGTTTTGCGCCCAGT 61.284 61.111 4.18 1.16 0.00 4.00
2184 2208 3.249973 GACGGTTTTGCGCCCAGTC 62.250 63.158 4.18 7.23 0.00 3.51
2185 2209 4.383602 CGGTTTTGCGCCCAGTCG 62.384 66.667 4.18 0.00 0.00 4.18
2186 2210 3.284449 GGTTTTGCGCCCAGTCGT 61.284 61.111 4.18 0.00 0.00 4.34
2187 2211 2.251371 GTTTTGCGCCCAGTCGTC 59.749 61.111 4.18 0.00 0.00 4.20
2188 2212 3.342627 TTTTGCGCCCAGTCGTCG 61.343 61.111 4.18 0.00 0.00 5.12
2217 2241 2.045340 CCCCCAGGCGTCGAAATT 60.045 61.111 0.00 0.00 0.00 1.82
2218 2242 2.406616 CCCCCAGGCGTCGAAATTG 61.407 63.158 0.00 0.00 0.00 2.32
2219 2243 2.406616 CCCCAGGCGTCGAAATTGG 61.407 63.158 0.00 0.00 0.00 3.16
2220 2244 2.485122 CCAGGCGTCGAAATTGGC 59.515 61.111 0.00 0.00 0.00 4.52
2221 2245 2.485122 CAGGCGTCGAAATTGGCC 59.515 61.111 0.00 0.00 45.91 5.36
2222 2246 2.750237 AGGCGTCGAAATTGGCCC 60.750 61.111 0.00 0.00 46.75 5.80
2223 2247 3.059386 GGCGTCGAAATTGGCCCA 61.059 61.111 0.00 0.00 39.67 5.36
2224 2248 2.178273 GCGTCGAAATTGGCCCAC 59.822 61.111 0.00 0.00 0.00 4.61
2225 2249 2.332654 GCGTCGAAATTGGCCCACT 61.333 57.895 0.00 0.00 0.00 4.00
2226 2250 1.862602 GCGTCGAAATTGGCCCACTT 61.863 55.000 0.00 0.00 0.00 3.16
2227 2251 0.596082 CGTCGAAATTGGCCCACTTT 59.404 50.000 0.00 0.00 0.00 2.66
2228 2252 1.665735 CGTCGAAATTGGCCCACTTTG 60.666 52.381 3.51 0.00 0.00 2.77
2229 2253 0.316841 TCGAAATTGGCCCACTTTGC 59.683 50.000 3.51 0.00 0.00 3.68
2230 2254 0.033228 CGAAATTGGCCCACTTTGCA 59.967 50.000 3.51 0.00 0.00 4.08
2231 2255 1.799544 GAAATTGGCCCACTTTGCAG 58.200 50.000 3.51 0.00 0.00 4.41
2232 2256 0.250424 AAATTGGCCCACTTTGCAGC 60.250 50.000 0.00 0.00 0.00 5.25
2233 2257 2.115734 AATTGGCCCACTTTGCAGCC 62.116 55.000 0.00 5.48 45.96 4.85
2236 2260 3.233231 GCCCACTTTGCAGCCCAA 61.233 61.111 0.00 0.00 0.00 4.12
2237 2261 2.586293 GCCCACTTTGCAGCCCAAT 61.586 57.895 0.00 0.00 32.49 3.16
2238 2262 2.060370 CCCACTTTGCAGCCCAATT 58.940 52.632 0.00 0.00 32.49 2.32
2239 2263 0.397564 CCCACTTTGCAGCCCAATTT 59.602 50.000 0.00 0.00 32.49 1.82
2240 2264 1.608801 CCCACTTTGCAGCCCAATTTC 60.609 52.381 0.00 0.00 32.49 2.17
2241 2265 1.421382 CACTTTGCAGCCCAATTTCG 58.579 50.000 0.00 0.00 32.49 3.46
2242 2266 0.318120 ACTTTGCAGCCCAATTTCGG 59.682 50.000 0.00 0.00 32.49 4.30
2250 2274 2.570442 GCCCAATTTCGGCGAATAAA 57.430 45.000 24.33 9.26 36.47 1.40
2251 2275 3.092334 GCCCAATTTCGGCGAATAAAT 57.908 42.857 24.33 11.40 36.47 1.40
2252 2276 2.794350 GCCCAATTTCGGCGAATAAATG 59.206 45.455 24.33 17.85 36.47 2.32
2253 2277 3.380142 CCCAATTTCGGCGAATAAATGG 58.620 45.455 24.33 24.39 0.00 3.16
2254 2278 3.181480 CCCAATTTCGGCGAATAAATGGT 60.181 43.478 24.33 0.00 0.00 3.55
2255 2279 4.041723 CCAATTTCGGCGAATAAATGGTC 58.958 43.478 24.33 0.00 0.00 4.02
2256 2280 3.982576 ATTTCGGCGAATAAATGGTCC 57.017 42.857 24.33 0.00 0.00 4.46
2257 2281 2.404923 TTCGGCGAATAAATGGTCCA 57.595 45.000 19.83 0.00 0.00 4.02
2258 2282 2.631160 TCGGCGAATAAATGGTCCAT 57.369 45.000 7.35 0.00 0.00 3.41
2259 2283 3.755112 TCGGCGAATAAATGGTCCATA 57.245 42.857 7.35 0.00 0.00 2.74
2260 2284 4.280436 TCGGCGAATAAATGGTCCATAT 57.720 40.909 7.35 0.00 0.00 1.78
2261 2285 4.000325 TCGGCGAATAAATGGTCCATATG 59.000 43.478 7.35 0.00 0.00 1.78
2262 2286 3.126858 CGGCGAATAAATGGTCCATATGG 59.873 47.826 16.25 16.25 0.00 2.74
2263 2287 3.443681 GGCGAATAAATGGTCCATATGGG 59.556 47.826 21.78 3.43 35.41 4.00
2264 2288 3.119495 GCGAATAAATGGTCCATATGGGC 60.119 47.826 21.78 20.24 39.63 5.36
2265 2289 3.126858 CGAATAAATGGTCCATATGGGCG 59.873 47.826 21.78 3.56 41.79 6.13
2266 2290 4.331968 GAATAAATGGTCCATATGGGCGA 58.668 43.478 21.78 17.93 41.79 5.54
2267 2291 2.276732 AAATGGTCCATATGGGCGAG 57.723 50.000 21.78 0.00 41.79 5.03
2268 2292 1.434188 AATGGTCCATATGGGCGAGA 58.566 50.000 21.78 7.81 41.79 4.04
2269 2293 1.434188 ATGGTCCATATGGGCGAGAA 58.566 50.000 21.78 6.99 41.79 2.87
2270 2294 1.434188 TGGTCCATATGGGCGAGAAT 58.566 50.000 21.78 0.00 41.79 2.40
2271 2295 2.615391 TGGTCCATATGGGCGAGAATA 58.385 47.619 21.78 0.00 41.79 1.75
2272 2296 2.567169 TGGTCCATATGGGCGAGAATAG 59.433 50.000 21.78 0.00 41.79 1.73
2273 2297 2.093447 GGTCCATATGGGCGAGAATAGG 60.093 54.545 21.78 0.00 41.79 2.57
2274 2298 1.555075 TCCATATGGGCGAGAATAGGC 59.445 52.381 21.78 0.00 36.21 3.93
2281 2305 2.561478 GGCGAGAATAGGCCCATAAA 57.439 50.000 0.00 0.00 43.64 1.40
2282 2306 3.073274 GGCGAGAATAGGCCCATAAAT 57.927 47.619 0.00 0.00 43.64 1.40
2283 2307 3.010420 GGCGAGAATAGGCCCATAAATC 58.990 50.000 0.00 0.00 43.64 2.17
2284 2308 2.673368 GCGAGAATAGGCCCATAAATCG 59.327 50.000 0.00 4.14 0.00 3.34
2285 2309 3.262420 CGAGAATAGGCCCATAAATCGG 58.738 50.000 0.00 0.00 0.00 4.18
2286 2310 3.010420 GAGAATAGGCCCATAAATCGGC 58.990 50.000 0.00 0.00 44.92 5.54
2287 2311 1.737793 GAATAGGCCCATAAATCGGCG 59.262 52.381 0.00 0.00 46.73 6.46
2288 2312 0.690762 ATAGGCCCATAAATCGGCGT 59.309 50.000 6.85 0.00 46.73 5.68
2289 2313 0.250124 TAGGCCCATAAATCGGCGTG 60.250 55.000 6.85 0.00 46.73 5.34
2290 2314 2.551912 GGCCCATAAATCGGCGTGG 61.552 63.158 6.85 6.65 46.73 4.94
2291 2315 1.822186 GCCCATAAATCGGCGTGGT 60.822 57.895 6.85 0.00 34.94 4.16
2292 2316 1.381165 GCCCATAAATCGGCGTGGTT 61.381 55.000 6.85 2.13 34.94 3.67
2293 2317 1.099689 CCCATAAATCGGCGTGGTTT 58.900 50.000 6.85 9.58 0.00 3.27
2294 2318 1.064952 CCCATAAATCGGCGTGGTTTC 59.935 52.381 6.85 0.00 0.00 2.78
2295 2319 1.267832 CCATAAATCGGCGTGGTTTCG 60.268 52.381 6.85 2.88 0.00 3.46
2303 2327 2.660552 CGTGGTTTCGCCGTGTCT 60.661 61.111 0.00 0.00 41.21 3.41
2304 2328 2.654912 CGTGGTTTCGCCGTGTCTC 61.655 63.158 0.00 0.00 41.21 3.36
2305 2329 2.355363 TGGTTTCGCCGTGTCTCG 60.355 61.111 0.00 0.00 41.21 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.632638 ACTAAATTACTAGCCATGATTGATTGT 57.367 29.630 0.00 0.00 0.00 2.71
52 53 9.192642 TGTTGTACACTAGAATATTACTAGCCA 57.807 33.333 15.88 9.07 40.40 4.75
87 88 3.435327 GCATCACACTTGAATAACGTGGA 59.565 43.478 0.00 0.00 34.61 4.02
194 195 2.096819 TGGAAGTCGCACAGTTTGTTTC 59.903 45.455 0.00 0.00 0.00 2.78
245 247 6.237313 AGTTCTGGTTTAAATGCGTAGTTC 57.763 37.500 0.00 0.00 0.00 3.01
285 287 5.790593 TCGTTCTAGTTCTGGCTTTTACAT 58.209 37.500 0.00 0.00 0.00 2.29
287 289 5.228665 ACTCGTTCTAGTTCTGGCTTTTAC 58.771 41.667 0.00 0.00 0.00 2.01
290 292 5.464030 TTACTCGTTCTAGTTCTGGCTTT 57.536 39.130 0.00 0.00 0.00 3.51
293 295 3.119424 AGCTTACTCGTTCTAGTTCTGGC 60.119 47.826 0.00 0.00 0.00 4.85
294 296 4.156190 TGAGCTTACTCGTTCTAGTTCTGG 59.844 45.833 0.00 0.00 46.69 3.86
303 305 6.462073 TGTTTTATGTGAGCTTACTCGTTC 57.538 37.500 10.29 0.00 46.69 3.95
335 337 8.210265 TCACTAATAATAATGCAGTGGATGTCA 58.790 33.333 0.00 0.00 37.72 3.58
427 430 3.923017 ATGAGTTTGCTACTTGTTGCC 57.077 42.857 4.92 0.00 37.17 4.52
459 462 5.329399 ACATAATTGGGTAGACTTTTGCCA 58.671 37.500 0.00 0.00 0.00 4.92
516 520 5.140454 GACCCTAATCATGGCCACTTTATT 58.860 41.667 8.16 8.26 0.00 1.40
522 526 0.550914 TGGACCCTAATCATGGCCAC 59.449 55.000 8.16 0.00 0.00 5.01
583 593 5.772393 TGTAGATTGGGTGGTTGTAATCT 57.228 39.130 0.00 0.00 41.36 2.40
972 982 4.132336 CCATCTCTCTCTCTCTCTCTGTG 58.868 52.174 0.00 0.00 0.00 3.66
1019 1029 4.394712 CCTCCACAGTCCGGTGCC 62.395 72.222 0.00 0.00 37.46 5.01
1095 1105 1.808411 AGCCATGTAGGAACAACACG 58.192 50.000 0.00 0.00 39.58 4.49
1110 1120 2.443394 CCATAGCTCCGGGAAGCCA 61.443 63.158 11.34 0.00 43.56 4.75
1113 1123 1.068741 GTGTACCATAGCTCCGGGAAG 59.931 57.143 0.00 0.00 0.00 3.46
1194 1204 0.615261 TGGTACCACCATAGCCACGA 60.615 55.000 11.60 0.00 44.79 4.35
1267 1277 0.103208 AGGGTATTGAGAAGCGCGAG 59.897 55.000 12.10 0.00 0.00 5.03
1287 1297 2.834638 ATCATACCTTTGCAAGCCCT 57.165 45.000 0.00 0.00 0.00 5.19
1309 1319 2.028130 CTCAACGAGCTCCTATGGACT 58.972 52.381 8.47 0.00 0.00 3.85
1366 1376 0.454600 CCACACAAGCATGCTGATCC 59.545 55.000 23.48 0.00 0.00 3.36
1539 1553 5.846203 AGGTTGATGTTTTTGTCCAATCAG 58.154 37.500 0.00 0.00 0.00 2.90
1585 1599 5.404366 ACGTTTGCCACACTATAATATAGCG 59.596 40.000 7.18 0.77 0.00 4.26
1590 1604 6.865411 TGTCTACGTTTGCCACACTATAATA 58.135 36.000 0.00 0.00 0.00 0.98
1615 1629 3.740115 ACCGTCAACACAAAGATTAGCT 58.260 40.909 0.00 0.00 0.00 3.32
1629 1643 1.757682 AAGTGCAAAAGGACCGTCAA 58.242 45.000 0.00 0.00 0.00 3.18
1632 1646 2.632987 ACTAAGTGCAAAAGGACCGT 57.367 45.000 0.00 0.00 0.00 4.83
1687 1701 9.622004 CTGACGTAACGGATATGTATTAATTCT 57.378 33.333 0.00 0.00 33.81 2.40
1688 1702 9.403110 ACTGACGTAACGGATATGTATTAATTC 57.597 33.333 0.00 0.00 33.81 2.17
1692 1706 8.382875 CGATACTGACGTAACGGATATGTATTA 58.617 37.037 0.00 0.00 37.98 0.98
1693 1707 7.239271 CGATACTGACGTAACGGATATGTATT 58.761 38.462 0.00 0.00 37.98 1.89
1703 1717 3.670055 ACAAAACCGATACTGACGTAACG 59.330 43.478 0.00 0.00 40.33 3.18
1709 1723 4.907582 CCGAAAAACAAAACCGATACTGAC 59.092 41.667 0.00 0.00 0.00 3.51
1712 1726 5.952526 ATCCGAAAAACAAAACCGATACT 57.047 34.783 0.00 0.00 0.00 2.12
1718 1732 4.278919 TCCCACTATCCGAAAAACAAAACC 59.721 41.667 0.00 0.00 0.00 3.27
1749 1763 6.680874 TTGTTCTACAGTTTCGCCTAAAAA 57.319 33.333 0.00 0.00 0.00 1.94
1750 1764 6.870971 ATTGTTCTACAGTTTCGCCTAAAA 57.129 33.333 0.00 0.00 0.00 1.52
1751 1765 7.156673 ACTATTGTTCTACAGTTTCGCCTAAA 58.843 34.615 0.00 0.00 0.00 1.85
1752 1766 6.694447 ACTATTGTTCTACAGTTTCGCCTAA 58.306 36.000 0.00 0.00 0.00 2.69
1753 1767 6.276832 ACTATTGTTCTACAGTTTCGCCTA 57.723 37.500 0.00 0.00 0.00 3.93
1754 1768 5.148651 ACTATTGTTCTACAGTTTCGCCT 57.851 39.130 0.00 0.00 0.00 5.52
1755 1769 5.855235 GAACTATTGTTCTACAGTTTCGCC 58.145 41.667 12.08 0.00 46.56 5.54
1768 1782 7.014038 CCCACTATCTACCGTAGAACTATTGTT 59.986 40.741 12.26 0.00 38.50 2.83
1769 1783 6.489361 CCCACTATCTACCGTAGAACTATTGT 59.511 42.308 12.26 1.04 38.50 2.71
1770 1784 6.713903 TCCCACTATCTACCGTAGAACTATTG 59.286 42.308 12.26 6.09 38.50 1.90
1771 1785 6.845908 TCCCACTATCTACCGTAGAACTATT 58.154 40.000 12.26 0.00 38.50 1.73
1772 1786 6.445451 TCCCACTATCTACCGTAGAACTAT 57.555 41.667 12.26 0.00 38.50 2.12
1773 1787 5.894298 TCCCACTATCTACCGTAGAACTA 57.106 43.478 12.26 1.14 38.50 2.24
1774 1788 4.785346 TCCCACTATCTACCGTAGAACT 57.215 45.455 12.26 0.00 38.50 3.01
1775 1789 5.359292 ACTTTCCCACTATCTACCGTAGAAC 59.641 44.000 12.26 0.00 38.50 3.01
1776 1790 5.513233 ACTTTCCCACTATCTACCGTAGAA 58.487 41.667 12.26 2.14 38.50 2.10
1777 1791 5.121380 ACTTTCCCACTATCTACCGTAGA 57.879 43.478 10.70 10.70 39.50 2.59
1778 1792 5.593502 AGAACTTTCCCACTATCTACCGTAG 59.406 44.000 0.00 0.00 0.00 3.51
1779 1793 5.513233 AGAACTTTCCCACTATCTACCGTA 58.487 41.667 0.00 0.00 0.00 4.02
1780 1794 4.351127 AGAACTTTCCCACTATCTACCGT 58.649 43.478 0.00 0.00 0.00 4.83
1781 1795 5.340439 AAGAACTTTCCCACTATCTACCG 57.660 43.478 0.00 0.00 0.00 4.02
1782 1796 9.682465 ATTAAAAGAACTTTCCCACTATCTACC 57.318 33.333 0.21 0.00 31.45 3.18
1785 1799 9.981460 ATCATTAAAAGAACTTTCCCACTATCT 57.019 29.630 0.21 0.00 31.45 1.98
1813 1827 6.634837 TGCATAAATCGTAAATGTAAATGGCG 59.365 34.615 0.00 0.00 0.00 5.69
1815 1829 9.897744 ATCTGCATAAATCGTAAATGTAAATGG 57.102 29.630 0.00 0.00 0.00 3.16
1824 1838 7.384439 TCACCAAATCTGCATAAATCGTAAA 57.616 32.000 0.00 0.00 0.00 2.01
1828 1842 8.344831 TCTTTATCACCAAATCTGCATAAATCG 58.655 33.333 0.00 0.00 0.00 3.34
1834 1848 5.361571 TGCATCTTTATCACCAAATCTGCAT 59.638 36.000 0.00 0.00 33.43 3.96
1844 1858 2.099756 GGCCACTTGCATCTTTATCACC 59.900 50.000 0.00 0.00 43.89 4.02
1887 1901 5.643421 AAAGTGATCTCCAGCCATTATCT 57.357 39.130 0.00 0.00 0.00 1.98
1916 1933 2.797177 AAGTGATCTCCAGCCTTTCC 57.203 50.000 0.00 0.00 0.00 3.13
1947 1964 8.712285 TTGGCACACTAATACTAGTTTCATAC 57.288 34.615 0.00 0.00 39.29 2.39
1948 1965 9.158233 GTTTGGCACACTAATACTAGTTTCATA 57.842 33.333 0.00 0.00 39.29 2.15
1950 1967 6.146510 CGTTTGGCACACTAATACTAGTTTCA 59.853 38.462 0.00 0.00 39.29 2.69
1951 1968 6.366877 TCGTTTGGCACACTAATACTAGTTTC 59.633 38.462 0.00 0.00 39.29 2.78
1952 1969 6.225318 TCGTTTGGCACACTAATACTAGTTT 58.775 36.000 0.00 0.00 39.29 2.66
1953 1970 5.786311 TCGTTTGGCACACTAATACTAGTT 58.214 37.500 0.00 0.00 39.29 2.24
1954 1971 5.395682 TCGTTTGGCACACTAATACTAGT 57.604 39.130 0.00 0.00 39.29 2.57
1955 1972 6.040247 TGATCGTTTGGCACACTAATACTAG 58.960 40.000 1.90 0.00 39.29 2.57
1956 1973 5.968254 TGATCGTTTGGCACACTAATACTA 58.032 37.500 1.90 0.00 39.29 1.82
1957 1974 4.827692 TGATCGTTTGGCACACTAATACT 58.172 39.130 1.90 0.00 39.29 2.12
1958 1975 5.539582 TTGATCGTTTGGCACACTAATAC 57.460 39.130 1.90 0.00 39.29 1.89
1959 1976 5.391523 GCTTTGATCGTTTGGCACACTAATA 60.392 40.000 1.90 0.00 39.29 0.98
1974 1991 4.633126 TCTTTTGAGAGGATGCTTTGATCG 59.367 41.667 0.00 0.00 0.00 3.69
2031 2048 5.661056 TGGACTGGAGACACTAACTAATG 57.339 43.478 0.00 0.00 35.60 1.90
2106 2130 0.106719 ATTTGTATGCGTCCTGGGGG 60.107 55.000 0.00 0.00 0.00 5.40
2107 2131 1.308998 GATTTGTATGCGTCCTGGGG 58.691 55.000 0.00 0.00 0.00 4.96
2108 2132 0.937304 CGATTTGTATGCGTCCTGGG 59.063 55.000 0.00 0.00 0.00 4.45
2109 2133 1.593006 GACGATTTGTATGCGTCCTGG 59.407 52.381 0.00 0.00 46.15 4.45
2110 2134 2.998668 GACGATTTGTATGCGTCCTG 57.001 50.000 0.00 0.00 46.15 3.86
2114 2138 2.540515 CAGAGGACGATTTGTATGCGT 58.459 47.619 0.00 0.00 41.45 5.24
2115 2139 1.860950 CCAGAGGACGATTTGTATGCG 59.139 52.381 0.00 0.00 0.00 4.73
2116 2140 2.213499 CCCAGAGGACGATTTGTATGC 58.787 52.381 0.00 0.00 33.47 3.14
2117 2141 2.485479 CCCCCAGAGGACGATTTGTATG 60.485 54.545 0.00 0.00 38.24 2.39
2118 2142 1.768870 CCCCCAGAGGACGATTTGTAT 59.231 52.381 0.00 0.00 38.24 2.29
2119 2143 1.200519 CCCCCAGAGGACGATTTGTA 58.799 55.000 0.00 0.00 38.24 2.41
2120 2144 1.991230 CCCCCAGAGGACGATTTGT 59.009 57.895 0.00 0.00 38.24 2.83
2121 2145 1.452108 GCCCCCAGAGGACGATTTG 60.452 63.158 0.00 0.00 38.24 2.32
2122 2146 2.998949 GCCCCCAGAGGACGATTT 59.001 61.111 0.00 0.00 38.24 2.17
2123 2147 3.470888 CGCCCCCAGAGGACGATT 61.471 66.667 0.00 0.00 38.24 3.34
2124 2148 4.458829 TCGCCCCCAGAGGACGAT 62.459 66.667 0.00 0.00 36.84 3.73
2138 2162 4.570663 AGTGTATCGCCGGCTCGC 62.571 66.667 26.68 17.46 0.00 5.03
2139 2163 2.353607 GAGTGTATCGCCGGCTCG 60.354 66.667 26.68 10.37 0.00 5.03
2140 2164 2.353607 CGAGTGTATCGCCGGCTC 60.354 66.667 26.68 12.39 45.98 4.70
2148 2172 2.279517 CCCAGCGCCGAGTGTATC 60.280 66.667 2.29 0.00 0.00 2.24
2149 2173 3.849951 CCCCAGCGCCGAGTGTAT 61.850 66.667 2.29 0.00 0.00 2.29
2158 2182 4.038080 CAAAACCGTCCCCAGCGC 62.038 66.667 0.00 0.00 0.00 5.92
2159 2183 4.038080 GCAAAACCGTCCCCAGCG 62.038 66.667 0.00 0.00 0.00 5.18
2160 2184 4.038080 CGCAAAACCGTCCCCAGC 62.038 66.667 0.00 0.00 0.00 4.85
2161 2185 4.038080 GCGCAAAACCGTCCCCAG 62.038 66.667 0.30 0.00 0.00 4.45
2166 2190 3.249973 GACTGGGCGCAAAACCGTC 62.250 63.158 10.83 9.35 0.00 4.79
2167 2191 3.284449 GACTGGGCGCAAAACCGT 61.284 61.111 10.83 3.69 0.00 4.83
2168 2192 4.383602 CGACTGGGCGCAAAACCG 62.384 66.667 10.83 2.69 0.00 4.44
2169 2193 3.249973 GACGACTGGGCGCAAAACC 62.250 63.158 10.83 0.47 33.86 3.27
2170 2194 2.251371 GACGACTGGGCGCAAAAC 59.749 61.111 10.83 0.00 33.86 2.43
2171 2195 3.342627 CGACGACTGGGCGCAAAA 61.343 61.111 10.83 0.00 33.86 2.44
2200 2224 2.045340 AATTTCGACGCCTGGGGG 60.045 61.111 15.73 5.80 0.00 5.40
2201 2225 2.406616 CCAATTTCGACGCCTGGGG 61.407 63.158 9.49 9.49 0.00 4.96
2202 2226 3.051392 GCCAATTTCGACGCCTGGG 62.051 63.158 0.00 0.00 0.00 4.45
2203 2227 2.485122 GCCAATTTCGACGCCTGG 59.515 61.111 0.00 0.00 0.00 4.45
2204 2228 2.485122 GGCCAATTTCGACGCCTG 59.515 61.111 0.00 0.00 38.41 4.85
2205 2229 2.750237 GGGCCAATTTCGACGCCT 60.750 61.111 4.39 0.00 41.35 5.52
2206 2230 3.059386 TGGGCCAATTTCGACGCC 61.059 61.111 2.13 0.00 40.85 5.68
2207 2231 1.862602 AAGTGGGCCAATTTCGACGC 61.863 55.000 14.45 0.00 0.00 5.19
2208 2232 0.596082 AAAGTGGGCCAATTTCGACG 59.404 50.000 25.03 0.00 24.46 5.12
2209 2233 1.934849 GCAAAGTGGGCCAATTTCGAC 60.935 52.381 27.50 16.55 29.07 4.20
2210 2234 0.316841 GCAAAGTGGGCCAATTTCGA 59.683 50.000 27.50 0.00 29.07 3.71
2211 2235 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.000 27.50 22.02 29.07 3.46
2212 2236 1.799544 CTGCAAAGTGGGCCAATTTC 58.200 50.000 27.50 21.06 29.07 2.17
2213 2237 0.250424 GCTGCAAAGTGGGCCAATTT 60.250 50.000 25.03 25.03 31.76 1.82
2214 2238 1.372307 GCTGCAAAGTGGGCCAATT 59.628 52.632 14.45 14.45 0.00 2.32
2215 2239 2.586293 GGCTGCAAAGTGGGCCAAT 61.586 57.895 8.40 3.05 43.59 3.16
2216 2240 3.233231 GGCTGCAAAGTGGGCCAA 61.233 61.111 8.40 0.00 43.59 4.52
2219 2243 2.115734 AATTGGGCTGCAAAGTGGGC 62.116 55.000 0.50 0.00 0.00 5.36
2220 2244 0.397564 AAATTGGGCTGCAAAGTGGG 59.602 50.000 0.50 0.00 0.00 4.61
2221 2245 1.799544 GAAATTGGGCTGCAAAGTGG 58.200 50.000 0.50 0.00 0.00 4.00
2222 2246 1.421382 CGAAATTGGGCTGCAAAGTG 58.579 50.000 0.50 0.00 0.00 3.16
2223 2247 0.318120 CCGAAATTGGGCTGCAAAGT 59.682 50.000 0.50 0.00 0.00 2.66
2224 2248 3.126729 CCGAAATTGGGCTGCAAAG 57.873 52.632 0.50 0.00 0.00 2.77
2232 2256 3.181480 ACCATTTATTCGCCGAAATTGGG 60.181 43.478 18.49 13.00 0.00 4.12
2233 2257 4.040445 ACCATTTATTCGCCGAAATTGG 57.960 40.909 2.60 10.86 0.00 3.16
2234 2258 4.041723 GGACCATTTATTCGCCGAAATTG 58.958 43.478 2.60 0.00 0.00 2.32
2235 2259 3.697045 TGGACCATTTATTCGCCGAAATT 59.303 39.130 2.60 0.00 0.00 1.82
2236 2260 3.283751 TGGACCATTTATTCGCCGAAAT 58.716 40.909 2.60 0.00 0.00 2.17
2237 2261 2.712709 TGGACCATTTATTCGCCGAAA 58.287 42.857 2.60 0.00 0.00 3.46
2238 2262 2.404923 TGGACCATTTATTCGCCGAA 57.595 45.000 0.33 0.33 0.00 4.30
2239 2263 2.631160 ATGGACCATTTATTCGCCGA 57.369 45.000 0.00 0.00 0.00 5.54
2240 2264 3.126858 CCATATGGACCATTTATTCGCCG 59.873 47.826 17.49 0.00 37.39 6.46
2241 2265 3.443681 CCCATATGGACCATTTATTCGCC 59.556 47.826 24.00 0.00 37.39 5.54
2242 2266 3.119495 GCCCATATGGACCATTTATTCGC 60.119 47.826 24.00 9.23 37.39 4.70
2243 2267 3.126858 CGCCCATATGGACCATTTATTCG 59.873 47.826 24.00 7.87 37.39 3.34
2244 2268 4.331968 TCGCCCATATGGACCATTTATTC 58.668 43.478 24.00 0.00 37.39 1.75
2245 2269 4.042809 TCTCGCCCATATGGACCATTTATT 59.957 41.667 24.00 0.00 37.39 1.40
2246 2270 3.587061 TCTCGCCCATATGGACCATTTAT 59.413 43.478 24.00 0.00 37.39 1.40
2247 2271 2.976185 TCTCGCCCATATGGACCATTTA 59.024 45.455 24.00 0.00 37.39 1.40
2248 2272 1.774254 TCTCGCCCATATGGACCATTT 59.226 47.619 24.00 1.13 37.39 2.32
2249 2273 1.434188 TCTCGCCCATATGGACCATT 58.566 50.000 24.00 0.00 37.39 3.16
2250 2274 1.434188 TTCTCGCCCATATGGACCAT 58.566 50.000 24.00 12.67 37.39 3.55
2251 2275 1.434188 ATTCTCGCCCATATGGACCA 58.566 50.000 24.00 0.00 37.39 4.02
2252 2276 2.093447 CCTATTCTCGCCCATATGGACC 60.093 54.545 24.00 12.27 37.39 4.46
2253 2277 2.678190 GCCTATTCTCGCCCATATGGAC 60.678 54.545 24.00 11.10 37.39 4.02
2254 2278 1.555075 GCCTATTCTCGCCCATATGGA 59.445 52.381 24.00 1.76 37.39 3.41
2255 2279 1.407437 GGCCTATTCTCGCCCATATGG 60.407 57.143 15.41 15.41 39.39 2.74
2256 2280 2.029838 GGCCTATTCTCGCCCATATG 57.970 55.000 0.00 0.00 39.39 1.78
2262 2286 2.561478 TTTATGGGCCTATTCTCGCC 57.439 50.000 7.02 0.00 44.92 5.54
2263 2287 2.673368 CGATTTATGGGCCTATTCTCGC 59.327 50.000 7.02 0.00 0.00 5.03
2264 2288 3.262420 CCGATTTATGGGCCTATTCTCG 58.738 50.000 7.02 12.96 0.00 4.04
2265 2289 3.010420 GCCGATTTATGGGCCTATTCTC 58.990 50.000 7.02 1.09 44.76 2.87
2266 2290 3.073274 GCCGATTTATGGGCCTATTCT 57.927 47.619 7.02 0.00 44.76 2.40
2273 2297 1.381165 AACCACGCCGATTTATGGGC 61.381 55.000 5.75 5.75 46.68 5.36
2274 2298 1.064952 GAAACCACGCCGATTTATGGG 59.935 52.381 0.00 0.00 36.47 4.00
2275 2299 1.267832 CGAAACCACGCCGATTTATGG 60.268 52.381 0.00 0.00 38.26 2.74
2276 2300 2.085532 CGAAACCACGCCGATTTATG 57.914 50.000 0.00 0.00 0.00 1.90
2286 2310 2.654912 GAGACACGGCGAAACCACG 61.655 63.158 16.62 0.00 39.03 4.94
2287 2311 2.654912 CGAGACACGGCGAAACCAC 61.655 63.158 16.62 0.00 39.03 4.16
2288 2312 2.355363 CGAGACACGGCGAAACCA 60.355 61.111 16.62 0.00 39.03 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.